##
# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
#
# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA
# Authors::   Robert Schmidt <roschmidt@ohri.ca>, Cedric Laczny <cedric.laczny@uni.lu>, Fotis Georgatos <fotis@cern.ch>
# License::   MIT/GPL
# $Id$
#
##
name = 'SAMtools'
version = '1.3'

homepage = 'http://www.htslib.org/'
description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, 
 including sorting, merging, indexing and generating alignments in a per-position format."""

toolchain = {'name': 'foss', 'version': '2015g'}
toolchainopts = {'optarch': True, 'pic': True}

source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s']
sources = [SOURCELOWER_TAR_BZ2]

# Patch Makefile to link against zlib provided by EB
patches = ['SAMtools-1.3_Makefile.patch']

dependencies = [
    ('ncurses', '5.9'),
    ('zlib', '1.2.8'),
]

moduleclass = 'bio'