# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
# Author: Pablo Escobar Lopez
# Swiss Institute of Bioinformatics
# Biozentrum - University of Basel

easyblock = 'Tarball'

name = 'MuTect'
version = '1.1.4'

homepage = 'http://www.broadinstitute.org/cancer/cga/mutect'
description = """ MuTect is a method developed at the Broad Institute for the reliable
 and accurate identification of somatic point mutations in next generation sequencing
 data of cancer genomes. """

toolchain = {'name': 'dummy', 'version': ''}

source_urls = ['http://www.broadinstitute.org/cancer/cga/sites/default/files/data/tools/mutect/']
sources = ['muTect-%(version)s-bin.zip']

java = 'Java'
javaver = '1.7.0_76'
versionsuffix = '-%s-%s' % (java, javaver)

dependencies = [(java, javaver)]

sanity_check_paths = {
    'files': ["muTect-%(version)s.jar"],
    'dirs': [],
}

modloadmsg = """
to execute: java -jar \\$EBROOTMUTECT/muTect-%(version)s.jar
"""

moduleclass = 'bio'