# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
# Author: Pablo Escobar Lopez
# sciCORE - University of Basel
# SIB Swiss Institute of Bioinformatics

easyblock = 'ConfigureMake'

name = 'ChIP-Seq'
version = '1.5-1'

homepage = 'http://chip-seq.sourceforge.net/'
description = """The ChIP-Seq software provides methods for the analysis of ChIP-seq data and
 other types of mass genome annotation data. The most common analysis tasks include positional
 correlation analysis, peak detection, and genome partitioning into signal-rich and signal-depleted regions."""

toolchain = {'name': 'goolf', 'version': '1.7.20'}

source_urls = [
    'http://downloads.sourceforge.net/project/chip-seq/chip-seq/%(version)s/']
sources = ['%(namelower)s.%(version)s.tar.gz']

skipsteps = ['configure']

buildopts = ' CC=$CC'

preinstallopts = 'mkdir -p %(installdir)s/bin && '

installopts = ' binDir=%(installdir)s/bin && '
installopts += 'mkdir -p %(installdir)s/man/man1 && '
installopts += 'make man manDir=%(installdir)s/man/man1/ && '
installopts += 'cp -a tools/ %(installdir)s && '
installopts += 'cp -a README doc/ %(installdir)s'

sanity_check_paths = {
    'files': [
        "bin/%s" %
        x for x in [
            "chipcenter",
            "chipcor",
            "chipextract",
            "chippart",
            "chippeak",
            "chipscore",
            "local_compactsga",
            "counts_filter",
            "countsga",
            "featreplace"]],
    'dirs': []}

# add tools dir to PATH
modextrapaths = {
    'PATH': "tools",
}

# fix shebang line in all provided perl scripts in tools folder
postinstallcmds = [
    "sed -i -e 's|/usr/bin/perl|/usr/bin/env\ perl|' %(installdir)s/tools/*.pl",
    "sed -i -e 's|/usr/local/bin/perl|/usr/bin/env\ perl|' %(installdir)s/tools/*.pl"]

moduleclass = 'bio'