name = 'R'
version = '3.2.0'
homepage = 'http://www.r-project.org/'
description = """R is a free software environment for statistical local_computing and graphics."""
toolchain = {'name': 'goolf', 'version': '1.7.20'}
sources = [SOURCE_TAR_GZ]
source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s']
preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"'
configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib"
# some recommended packages may fail in a parallel build (e.g. Matrix),
# and we're installing them anyway below
configopts += " --with-recommended-packages=no"
dependencies = [
('libreadline', '6.3'),
('ncurses', '5.9'),
('libpng', '1.6.17'), # for plotting in R
('libjpeg-turbo', '1.4.0'), # for plottting in R
# Java bindings are built if Java is found, might as well provide it
('Java', '1.7.0_80', '', True),
('Tcl', '8.6.4'), # for tcltk
('Tk', '8.6.4', '-no-X11'), # for tcltk
('cURL', '7.43.0'), # for RCurl
('libxml2', '2.9.2'), # for XML
]
local_name_tmpl = '%(name)s_%(version)s.tar.gz'
local_ext_options = {
'source_urls': [
# package archive
'http://cran.r-project.org/src/contrib/Archive/%(name)s',
'http://cran.r-project.org/src/contrib/', # current version of packages
# mirror alternative for current packages
'http://cran.freestatistics.org/src/contrib',
],
'source_tmpl': local_name_tmpl,
}
# !! order of packages is important !!
# packages updated on January 8th 2015
exts_list = [
# default libraries, only here to sanity check their presence
'base',
'datasets',
'graphics',
'grDevices',
'grid',
'methods',
'splines',
'stats',
'stats4',
'tools',
'utils',
# non-standard libraries, should be specified with fixed versions!
# Rmpi segfaults (on some systems) when built with goolf/1.7.20?
#('Rmpi', '0.6-5', dict(local_ext_options.items() + [('patches', ['Rmpi-0.6-5_impi5.patch'])])),
('abind', '1.4-3', local_ext_options),
('magic', '1.5-6', local_ext_options),
('geometry', '0.3-5', local_ext_options),
('bit', '1.1-12', local_ext_options),
('filehash', '2.2-2', local_ext_options),
('ff', '2.2-13', local_ext_options),
('bnlearn', '3.7.1', local_ext_options),
('bootstrap', '2015.2', local_ext_options),
('combinat', '0.0-8', local_ext_options),
('deal', '1.2-37', local_ext_options),
('fdrtool', '1.2.14', local_ext_options),
('formatR', '1.2', local_ext_options),
('gtools', '3.4.2', local_ext_options),
('gdata', '2.13.3', local_ext_options),
('GSA', '1.03', local_ext_options),
('highr', '0.5', local_ext_options),
('infotheo', '1.2.0', local_ext_options),
('lars', '1.2', local_ext_options),
('lazy', '1.2-15', local_ext_options),
('kernlab', '0.9-20', local_ext_options),
('mime', '0.3', local_ext_options),
('markdown', '0.7.7', local_ext_options),
('mlbench', '2.1-1', local_ext_options),
('NLP', '0.1-6', local_ext_options),
('mclust', '5.0.1', local_ext_options),
('RANN', '2.5', local_ext_options),
('rmeta', '2.16', local_ext_options),
('segmented', '0.5-1.1', local_ext_options),
('som', '0.3-5', local_ext_options),
('SuppDists', '1.1-9.1', local_ext_options),
('stabledist', '0.6-6', local_ext_options),
('survivalROC', '1.0.3', local_ext_options),
('pspline', '1.0-16', local_ext_options),
('timeDate', '3012.100', local_ext_options),
('longmemo', '1.0-0', local_ext_options),
('ADGofTest', '0.3', local_ext_options),
('ade4', '1.7-2', local_ext_options),
('AlgDesign', '1.1-7.3', local_ext_options),
('base64enc', '0.1-2', local_ext_options),
('BH', '1.55.0-3', local_ext_options),
('brew', '1.0-6', local_ext_options),
('Brobdingnag', '1.2-4', local_ext_options),
('corpcor', '1.6.7', local_ext_options),
('longitudinal', '1.1.11', local_ext_options),
('checkmate', '1.5.2', local_ext_options),
('cubature', '1.1-2', local_ext_options),
('DEoptimR', '1.0-2', local_ext_options),
('digest', '0.6.8', local_ext_options),
('fastmatch', '1.0-4', local_ext_options),
('ffbase', '0.11.3', local_ext_options),
('iterators', '1.0.7', local_ext_options),
('maps', '2.3-9', local_ext_options),
('nnls', '1.4', local_ext_options),
('sendmailR', '1.2-1', local_ext_options),
('spam', '1.0-1', local_ext_options),
('subplex', '1.1-4', local_ext_options),
('stringr', '0.6.2', local_ext_options),
('evaluate', '0.7', local_ext_options),
('logspline', '2.1.5', local_ext_options),
('ncbit', '2013.03.29', local_ext_options),
('permute', '0.8-3', local_ext_options),
('plotrix', '3.5-11', local_ext_options),
('randomForest', '4.6-10', local_ext_options),
('scatterplot3d', '0.3-35', local_ext_options),
('SparseM', '1.6', local_ext_options),
('tripack', '1.3-6', local_ext_options),
('irace', '1.06', local_ext_options),
('rJava', '0.9-6', local_ext_options),
('lattice', '0.20-31', local_ext_options),
('RColorBrewer', '1.1-2', local_ext_options),
('latticeExtra', '0.6-26', local_ext_options),
('Matrix', '1.2-0', local_ext_options),
('png', '0.1-7', local_ext_options),
('Rcpp', '0.11.5', local_ext_options),
('RcppArmadillo', '0.5.000.0', local_ext_options),
('plyr', '1.8.2', local_ext_options),
('pROC', '1.7.3', local_ext_options),
('quadprog', '1.5-5', local_ext_options),
('BB', '2014.10-1', local_ext_options),
('BBmisc', '1.9', local_ext_options),
('fail', '1.2', local_ext_options),
('rlecuyer', '0.3-3', local_ext_options),
('snow', '0.3-13', local_ext_options),
('MASS', '7.3-40', local_ext_options),
('tree', '1.0-35', local_ext_options),
('pls', '2.4-3', local_ext_options),
('class', '7.3-12', local_ext_options),
('e1071', '1.6-4', local_ext_options),
('nnet', '7.3-9', local_ext_options),
('nlme', '3.1-120', local_ext_options),
('minqa', '1.2.4', local_ext_options),
('RcppEigen', '0.3.2.4.0', local_ext_options),
('quantreg', '5.11', local_ext_options),
('mgcv', '1.8-6', local_ext_options),
('colorspace', '1.2-6', local_ext_options),
('robustbase', '0.92-3', local_ext_options),
('sp', '1.1-0', local_ext_options),
('vcd', '1.3-2', local_ext_options),
('snowfall', '1.84-6', local_ext_options),
('rpart', '4.1-9', local_ext_options),
('mice', '2.22', local_ext_options),
('urca', '1.2-8', local_ext_options),
('fracdiff', '1.4-2', local_ext_options),
('logistf', '1.21', local_ext_options),
('akima', '0.5-11', local_ext_options),
('bitops', '1.0-6', local_ext_options),
('boot', '1.3-15', local_ext_options),
('mixtools', '1.0.3', local_ext_options),
('cluster', '2.0.1', local_ext_options),
('gclus', '1.3.1', local_ext_options),
('coda', '0.17-1', local_ext_options),
('codetools', '0.2-11', local_ext_options),
('foreach', '1.4.2', local_ext_options),
('doMC', '1.3.3', local_ext_options),
('DBI', '0.3.1', local_ext_options),
('foreign', '0.8-63', local_ext_options),
('survival', '2.38-1', local_ext_options),
('gam', '1.09.1', local_ext_options),
('gamlss.data', '4.2-7', local_ext_options),
('gamlss.dist', '4.3-4', local_ext_options),
('hwriter', '1.3.2', local_ext_options),
('KernSmooth', '2.23-14', local_ext_options),
('zoo', '1.7-12', local_ext_options),
('xts', '0.9-7', local_ext_options),
('TTR', '0.22-0', local_ext_options),
('quantmod', '0.4-4', local_ext_options),
('lmtest', '0.9-33', local_ext_options),
('mnormt', '1.5-2', local_ext_options),
('mvtnorm', '1.0-2', local_ext_options),
('pcaPP', '1.9-60', local_ext_options),
('numDeriv', '2012.9-1', local_ext_options),
('lava', '1.4.0', local_ext_options),
('prodlim', '1.5.1', local_ext_options),
('pscl', '1.4.9', local_ext_options),
('RSQLite', '1.0.0', local_ext_options),
('BatchJobs', '1.6', local_ext_options),
('sandwich', '2.3-3', local_ext_options),
('sfsmisc', '1.0-27', local_ext_options),
('spatial', '7.3-9', local_ext_options),
('VGAM', '0.9-7', local_ext_options),
('waveslim', '1.7.5', local_ext_options),
('xtable', '1.7-4', local_ext_options),
('profileModel', '0.5-9', local_ext_options),
('brglm', '0.5-9', local_ext_options),
('deSolve', '1.11', local_ext_options),
('tseriesChaos', '0.1-13', local_ext_options),
('tseries', '0.10-34', local_ext_options),
('fastICA', '1.2-0', local_ext_options),
('R.methodsS3', '1.7.0', local_ext_options),
('R.oo', '1.19.0', local_ext_options),
('cgdsr', '1.1.33', local_ext_options),
('R.utils', '2.0.1', local_ext_options),
('R.matlab', '3.2.0', local_ext_options),
('gbm', '2.1.1', local_ext_options),
('dichromat', '2.0-0', local_ext_options),
('Formula', '1.2-1', local_ext_options),
('acepack', '1.3-3.3', local_ext_options),
('reshape2', '1.4.1', local_ext_options),
('gtable', '0.1.2', local_ext_options),
('munsell', '0.4.2', local_ext_options),
('labeling', '0.3', local_ext_options),
('scales', '0.2.4', local_ext_options),
('proto', '0.3-10', local_ext_options),
('ggplot2', '1.0.1', local_ext_options),
('Hmisc', '3.15-0', local_ext_options),
('fastcluster', '1.1.16', local_ext_options),
('chron', '2.3-45', local_ext_options),
('data.table', '1.9.4', local_ext_options),
('igraph', '0.7.1', local_ext_options),
('GeneNet', '1.2.12', local_ext_options),
('ape', '3.2', local_ext_options),
('htmltools', '0.2.6', local_ext_options),
('RJSONIO', '1.3-0', local_ext_options),
('caTools', '1.17.1', local_ext_options),
('gplots', '2.16.0', local_ext_options),
('ROCR', '1.0-7', local_ext_options),
('httpuv', '1.3.2', local_ext_options),
('R6', '2.0.1', local_ext_options),
('shiny', '0.11.1', local_ext_options),
('adegenet', '1.4-2', local_ext_options),
('phylobase', '0.6.8', local_ext_options),
('adephylo', '1.1-6', local_ext_options),
('animation', '2.3', local_ext_options),
('bigmemory.sri', '0.1.3', local_ext_options),
('bigmemory', '4.4.6', local_ext_options),
('calibrate', '1.7.2', local_ext_options),
('clusterGeneration', '1.3.4', local_ext_options),
('raster', '2.3-40', local_ext_options),
('dismo', '1.0-12', local_ext_options),
('expm', '0.99-1.1', local_ext_options),
('extrafontdb', '1.0', local_ext_options),
('Rttf2pt1', '1.3.3', local_ext_options),
('extrafont', '0.17', local_ext_options),
('fields', '8.2-1', local_ext_options),
('shapefiles', '0.7', local_ext_options),
('fossil', '0.3.7', local_ext_options),
('geiger', '2.0.3', local_ext_options),
('glmnet', '2.0-2', local_ext_options),
('labdsv', '1.6-1', local_ext_options),
('MatrixModels', '0.4-0', local_ext_options),
('stabs', '0.5-1', local_ext_options),
('mboost', '2.4-2', local_ext_options),
('msm', '1.5', local_ext_options),
('nor1mix', '1.2-0', local_ext_options),
('np', '0.60-2', local_ext_options),
('polynom', '1.3-8', local_ext_options),
('quantreg', '5.11', local_ext_options),
('polspline', '1.1.9', local_ext_options),
('TH.data', '1.0-6', local_ext_options),
('multlocal_comp', '1.4-0', local_ext_options),
('gridExtra', '0.9.1', local_ext_options),
('rms', '4.3-0', local_ext_options),
('RWekajars', '3.7.12-1', local_ext_options),
('RWeka', '0.4-24', local_ext_options),
('slam', '0.1-32', local_ext_options),
('tm', '0.6', local_ext_options),
('TraMineR', '1.8-9', local_ext_options),
('chemometrics', '1.3.9', local_ext_options),
('FNN', '1.1', local_ext_options),
('ipred', '0.9-4', local_ext_options),
('yaml', '2.1.13', local_ext_options),
('knitr', '1.10', local_ext_options),
('statmod', '1.4.21', local_ext_options),
('miscTools', '0.6-16', local_ext_options),
('maxLik', '1.2-4', local_ext_options),
('mlogit', '0.2-4', local_ext_options),
('getopt', '1.20.0', local_ext_options),
('gsalib', '2.1', local_ext_options),
('reshape', '0.8.5', local_ext_options),
('optparse', '1.3.0', local_ext_options),
('klaR', '0.6-12', local_ext_options),
('neuRosim', '0.2-12', local_ext_options),
('locfit', '1.5-9.1', local_ext_options),
('GGally', '0.5.0', local_ext_options),
('beanplot', '1.2', local_ext_options),
('clValid', '0.6-6', local_ext_options),
('matrixStats', '0.14.0', local_ext_options),
('DiscriMiner', '0.1-29', local_ext_options),
('ellipse', '0.3-8', local_ext_options),
('leaps', '2.9', local_ext_options),
('nloptr', '1.0.4', local_ext_options),
('lme4', '1.1-8', local_ext_options),
('pbkrtest', '0.4-2', local_ext_options),
('car', '2.0-25', local_ext_options),
('flashClust', '1.01-2', local_ext_options),
('FactoMineR', '1.29', local_ext_options),
('modeltools', '0.2-21', local_ext_options),
('flexclust', '1.3-4', local_ext_options),
('flexmix', '2.3-13', local_ext_options),
('prabclus', '2.2-6', local_ext_options),
('diptest', '0.75-6', local_ext_options),
('trimcluster', '0.1-2', local_ext_options),
('fpc', '2.1-9', local_ext_options),
('BiasedUrn', '1.06.1', local_ext_options),
('TeachingDemos', '2.9', local_ext_options),
('jsonlite', '0.9.16', local_ext_options),
('kohonen', '2.0.18', local_ext_options),
('base64', '1.1', local_ext_options),
('registry', '0.2', local_ext_options),
('pkgmaker', '0.22', local_ext_options),
('rngtools', '1.2.4', local_ext_options),
('doRNG', '1.6', local_ext_options),
('nleqslv', '2.7', local_ext_options),
('RGCCA', '2.0', local_ext_options),
('pheatmap', '1.0.2', local_ext_options),
('openxlsx', '2.4.0', local_ext_options),
('pvclust', '1.3-2', local_ext_options),
('RCircos', '1.1.2', local_ext_options),
('VennDiagram', '1.6.9', local_ext_options),
('xlsxjars', '0.6.1', local_ext_options),
('xlsx', '0.5.7', local_ext_options),
('vegan', '2.3-0', local_ext_options),
('forecast', '6.1', local_ext_options),
('fma', '2.01', local_ext_options),
('expsmooth', '2.3', local_ext_options),
('fpp', '0.5', local_ext_options),
('XML', '3.98-1.1', local_ext_options),
('memoise', '0.2.1', local_ext_options),
('crayon', '1.3.1', local_ext_options),
('testthat', '0.10.0', local_ext_options),
('rmarkdown', '0.7', local_ext_options),
('curl', '0.9.1', local_ext_options),
('RCurl', '1.95-4.7', local_ext_options),
('httr', '0.6.1', local_ext_options),
('maptools', '0.8-36', local_ext_options),
('deldir', '0.1-9', local_ext_options),
('tensor', '1.5', local_ext_options),
('polyclip', '1.3-0', local_ext_options),
('goftest', '1.0-2', local_ext_options),
('spatstat', '1.41-1', local_ext_options),
('gdalUtils', '0.3.1', local_ext_options),
('pracma', '1.8.3', local_ext_options),
('bio3d', '2.2-2', local_ext_options),
('penalized', '0.9-45', local_ext_options),
('coin', '1.0-24', local_ext_options),
('clusterRepro', '0.5-1.1', local_ext_options),
('randomForestSRC', '2.0.7', local_ext_options),
('sm', '2.2-5.4', local_ext_options),
]
moduleclass = 'lang'