name = 'Amber' local_amber_ver = 20 local_ambertools_ver = 21 # Patch levels from http://ambermd.org/AmberPatches.php and http://ambermd.org/ATPatches.php patchlevels = (3, 11) # (AmberTools, Amber) version = '%s.%s' % (local_amber_ver, patchlevels[1]) versionsuffix = '-AmberTools-%s.%s' % (local_ambertools_ver, patchlevels[0]) homepage = 'http://ambermd.org/amber.html' description = """Amber (originally Assisted Model Building with Energy Refinement) is software for performing molecular dynamics and structure prediction.""" toolchain = {'name': 'foss', 'version': '2020b'} toolchainopts = {'usempi': True, 'openmp': True} sources = [ '%%(name)s%s.tar.bz2' % local_amber_ver, 'AmberTools%s.tar.bz2' % local_ambertools_ver, ] patches = [ 'AmberTools-20_cmake-locate-netcdf.patch', 'AmberTools-20_fix_missing_MPI_LIBRARY_error.patch', 'AmberTools-20_fix_xblas_missing_make_dependency.patch', ] checksums = [ '559d5b7b872344c268a62ebd5d33f71d', # Amber20.tar.bz2 '81bd97be0aa9d3e728f2db5f63987e04', # AmberTools21.tar.bz2 '473e07c53b6f641d96d333974a6af2e03413fecef79f879d3fdecf7fecaab4d0', # AmberTools-20_cmake-locate-netcdf.patch '185040c79c8799d4f2d75139b7c648a1863f3484c4e1baab3470d2cf8d660b65', # AmberTools-20_fix_missing_MPI_LIBRARY_error.patch 'ff25e91fdc72347a778c3837b581e174d6a8c71efa5b46e11391b18bca84fd65', #AmberTools-20_fix_xblas_missing_make_dependency.patch ] builddependencies = [ ('Bison', '3.7.1'), ('CMake', '3.18.4'), ('flex', '2.6.4'), ('make', '4.3'), ] dependencies = [ ('zlib', '1.2.11'), ('bzip2', '1.0.8'), ('Python', '3.8.6'), ('SciPy-bundle', '2020.11'), # mpi4py required for MMPBSA ('Perl', '5.32.0'), ('Boost', '1.74.0'), ('libreadline', '8.0'), ('matplotlib', '3.3.3'), ('netCDF', '4.7.4'), ('netCDF-Fortran', '4.5.3'), ('PnetCDF', '1.12.2'), ('Tkinter', '3.8.6'), ('X11', '20201008'), ] # All tests are expected to pass or be skipped runtest = True static = False moduleclass = 'chem'