# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
# Author: Pablo Escobar Lopez
# sciCORE - University of Basel
# SIB Swiss Institute of Bioinformatics

easyblock = 'Bundle'

name = 'Pysam'
version = '0.9.0'
versionsuffix = '-Python-%(local_pyver)s'

homepage = 'https://github.com/pysam-developers/pysam'
description = """Pysam is a python module for reading and manipulating Samfiles.
 It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix."""

toolchain = {'name': 'goolf', 'version': '1.7.20'}

parallel = 1

dependencies = [
    ('Python', '2.7.11'),
    ('ncurses', '5.9'),
    ('zlib', '1.2.8'),
    ('cURL', '7.44.0'),
]

# this is a bundle of Python packages
exts_defaultclass = 'PythonPackage'
exts_filter = ("python -c 'import %(ext_name)s'", '')

exts_list = [
    ('Cython', '0.23.4', {
        'source_urls': ['http://cython.org/release/'],
    }),
    ('pysam', version, {
        'source_tmpl': 'v%(version)s.tar.gz',
        'source_urls': ['https://github.com/pysam-developers/pysam/archive/'],
    }),
]

modextrapaths = {
    'PYTHONPATH': ['lib/python%(local_pyshortver)s/site-packages'],
}

sanity_check_paths = {'files': [], 'dirs': [
    'lib/python%(local_pyshortver)s/site-packages/pysam-%(version)s-py%(local_pyshortver)s-linux-x86_64.egg'], }

moduleclass = 'bio'