# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
# Author: Pablo Escobar Lopez
# sciCORE - University of Basel
# SIB Swiss Institute of Bioinformatics

easyblock = 'MakeCp'

name = 'Minimac2'
version = '2014.9.15'

homepage = 'http://genome.sph.umich.edu/wiki/Minimac2'
description = """minimac2 is an improved version of Minimac. It is designed to work on phased
 genotypes and can handle very large reference panels with hundreds or thousands of haplotypes.
 The name has two parts. The first, mini, refers to the modest amount of local_computational resources it requires.
 The second, mac, is short hand for MaCH, our widely used algorithm for genotype imputation."""

toolchain = {'name': 'goolf', 'version': '1.7.20'}

source_urls = ['http://csg.sph.umich.edu/cfuchsb/']
sources = ['%(namelower)s.%(version)s.src.tgz']

osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')]

dependencies = [
    ('zlib', '1.2.8'),
    # This app also depends in openblas
    #   ('OpenSSL', '1.0.1q'),  # OS dependency should be preferred if the os version is more recent then this version, it's
    #   nice to have an up to date openssl for security reasons
]

# firt move to folder libStatGen to run make clean && make
# make clean is mandatory because the sources tarball includes
# files from previous build
prebuildopts = ["cd libStatGen && make clean && "]

# in libStatGen folder run just "make"
# in minimac folder run "make clean && make opt && make openmp"
buildopts = [" && cd ../minimac2 && make clean && make opt && make openmp"]

# parallel build fails
parallel = 1

files_to_copy = [
    (["minimac2/bin/minimac2", "minimac2/bin/minimac2-omp"], "bin")]

sanity_check_paths = {
    'files': ['bin/minimac2', 'bin/minimac2-omp'],
    'dirs': []
}

moduleclass = 'bio'