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modified: h/HTSlib/HTSlib-1.9-intel-2020a.eb
deleted: s/SciPy-bundle/SciPy-bundle-2020.03-intel-2020a-Python-3.8.2-LK.eb deleted: s/SciPy-bundle/SciPy-bundle-2020.03-intel-2020a-Python-3.8.2.eb
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# IT4Innovations 2020
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# JH 2020
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easyblock = 'ConfigureMake'
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easyblock = 'ConfigureMake'
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@ -15,9 +15,9 @@ source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(ve
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sources = [SOURCELOWER_TAR_BZ2]
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sources = [SOURCELOWER_TAR_BZ2]
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dependencies = [
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dependencies = [
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('zlib', '1.2.11', '', True),
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('zlib', '1.2.11'),
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('bzip2', '1.0.6', '', True),
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('bzip2', '1.0.8'),
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('XZ', '5.2.4', '', True),
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('XZ', '5.2.5'),
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]
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]
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sanity_check_paths = {
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sanity_check_paths = {
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# JH 2020
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easyblock = 'PythonBundle'
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name = 'SciPy-bundle'
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version = '2020.03'
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versionsuffix = '-Python-3.8.2-LK'
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homepage = 'https://python.org/'
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description = "Bundle of Python packages for scientific software"
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toolchain = {'name': 'intel', 'version': '2020a'}
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toolchainopts = {'pic': True, 'lowopt': True}
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dependencies = [
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('Python', '3.8.2'),
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('pybind11', '2.4.3', '-Python-3.8.2'), # required by scipy
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]
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use_pip = True
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exts_default_options = {'source_urls': [PYPI_SOURCE]}
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# order is important!
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exts_list = [
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('numpy', '1.18.5', {
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'patches': ['numpy-1.18.2-mkl.patch'],
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'source_tmpl': '%(name)s-%(version)s.zip',
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# 'checksums': [
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# 'e46e2384209c91996d5ec16744234d1c906ab79a701ce1a26155c9ec890b8dc8', # numpy-1.18.2.zip
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# 'ea25ad5c0148c1398d282f0424e642fb9815a1a80f4512659b018e2adc378bcf', # numpy-1.18.2-mkl.patch
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# ],
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}),
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('scipy', '1.4.1', {
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'patches': ['scipy-1.4.1-fix-pthread.patch'],
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'checksums': [
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'dee1bbf3a6c8f73b6b218cb28eed8dd13347ea2f87d572ce19b289d6fd3fbc59', # scipy-1.4.1.tar.gz
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'4e2162a93caddce63a1aa2dfb6c181774a4f6615950e1d60c54bb4308fee3bb3', # scipy-1.4.1-fix-pthread.patch
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],
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}),
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('mpi4py', '3.0.3', {
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'checksums': ['012d716c8b9ed1e513fcc4b18e5af16a8791f51e6d1716baccf988ad355c5a1f'],
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}),
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('pandas', '1.0.3', {
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'checksums': ['32f42e322fb903d0e189a4c10b75ba70d90958cc4f66a1781ed027f1a1d14586'],
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}),
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('mpmath', '1.1.0', {
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'checksums': ['fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6'],
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}),
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('deap', '1.3.1', {
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'checksums': ['11f54493ceb54aae10dde676577ef59fc52d52f82729d5a12c90b0813c857a2f'],
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}),
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]
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sanity_pip_check = True
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moduleclass = 'lang'
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@ -1,58 +0,0 @@
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# JH 2020
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easyblock = 'PythonBundle'
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name = 'SciPy-bundle'
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version = '2020.03'
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versionsuffix = '-Python-%(pyver)s'
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homepage = 'https://python.org/'
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description = "Bundle of Python packages for scientific software"
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toolchain = {'name': 'intel', 'version': '2020a'}
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toolchainopts = {'pic': True, 'lowopt': True}
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dependencies = [
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('Python', '3.8.2'),
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('pybind11', '2.4.3', versionsuffix), # required by scipy
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]
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use_pip = True
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exts_default_options = {'source_urls': [PYPI_SOURCE]}
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default_easyblock = 'PythonPackage'
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# order is important!
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exts_list = [
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('numpy', '1.18.3', {
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'patches': ['numpy-1.18.2-mkl.patch'],
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'source_tmpl': '%(name)s-%(version)s.zip',
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'checksums': [
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'e46e2384209c91996d5ec16744234d1c906ab79a701ce1a26155c9ec890b8dc8', # numpy-1.18.2.zip
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'ea25ad5c0148c1398d282f0424e642fb9815a1a80f4512659b018e2adc378bcf', # numpy-1.18.2-mkl.patch
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],
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}),
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('scipy', '1.4.1', {
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'patches': ['scipy-1.4.1-fix-pthread.patch'],
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'checksums': [
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'dee1bbf3a6c8f73b6b218cb28eed8dd13347ea2f87d572ce19b289d6fd3fbc59', # scipy-1.4.1.tar.gz
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'4e2162a93caddce63a1aa2dfb6c181774a4f6615950e1d60c54bb4308fee3bb3', # scipy-1.4.1-fix-pthread.patch
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],
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}),
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('mpi4py', '3.0.3', {
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'checksums': ['012d716c8b9ed1e513fcc4b18e5af16a8791f51e6d1716baccf988ad355c5a1f'],
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}),
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('pandas', '1.0.3', {
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'checksums': ['32f42e322fb903d0e189a4c10b75ba70d90958cc4f66a1781ed027f1a1d14586'],
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}),
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('mpmath', '1.1.0', {
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'checksums': ['fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6'],
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}),
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('deap', '1.3.1', {
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'checksums': ['11f54493ceb54aae10dde676577ef59fc52d52f82729d5a12c90b0813c857a2f'],
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}),
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]
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sanity_pip_check = True
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moduleclass = 'lang'
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