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modified: h/HTSlib/HTSlib-1.9-intel-2020a.eb

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deleted:    s/SciPy-bundle/SciPy-bundle-2020.03-intel-2020a-Python-3.8.2-LK.eb
	deleted:    s/SciPy-bundle/SciPy-bundle-2020.03-intel-2020a-Python-3.8.2.eb
This commit is contained in:
Lukáš Krupčík 2020-08-27 13:23:14 +02:00
parent efb02f26fb
commit fcc2abba71
3 changed files with 4 additions and 119 deletions

8
h/HTSlib/HTSlib-1.9-intel-2020a.eb

@ -1,4 +1,4 @@
# IT4Innovations 2020
# JH 2020
easyblock = 'ConfigureMake'
@ -15,9 +15,9 @@ source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(ve
sources = [SOURCELOWER_TAR_BZ2]
dependencies = [
('zlib', '1.2.11', '', True),
('bzip2', '1.0.6', '', True),
('XZ', '5.2.4', '', True),
('zlib', '1.2.11'),
('bzip2', '1.0.8'),
('XZ', '5.2.5'),
]
sanity_check_paths = {

57
s/SciPy-bundle/SciPy-bundle-2020.03-intel-2020a-Python-3.8.2-LK.eb

@ -1,57 +0,0 @@
# JH 2020
easyblock = 'PythonBundle'
name = 'SciPy-bundle'
version = '2020.03'
versionsuffix = '-Python-3.8.2-LK'
homepage = 'https://python.org/'
description = "Bundle of Python packages for scientific software"
toolchain = {'name': 'intel', 'version': '2020a'}
toolchainopts = {'pic': True, 'lowopt': True}
dependencies = [
('Python', '3.8.2'),
('pybind11', '2.4.3', '-Python-3.8.2'), # required by scipy
]
use_pip = True
exts_default_options = {'source_urls': [PYPI_SOURCE]}
# order is important!
exts_list = [
('numpy', '1.18.5', {
'patches': ['numpy-1.18.2-mkl.patch'],
'source_tmpl': '%(name)s-%(version)s.zip',
# 'checksums': [
# 'e46e2384209c91996d5ec16744234d1c906ab79a701ce1a26155c9ec890b8dc8', # numpy-1.18.2.zip
# 'ea25ad5c0148c1398d282f0424e642fb9815a1a80f4512659b018e2adc378bcf', # numpy-1.18.2-mkl.patch
# ],
}),
('scipy', '1.4.1', {
'patches': ['scipy-1.4.1-fix-pthread.patch'],
'checksums': [
'dee1bbf3a6c8f73b6b218cb28eed8dd13347ea2f87d572ce19b289d6fd3fbc59', # scipy-1.4.1.tar.gz
'4e2162a93caddce63a1aa2dfb6c181774a4f6615950e1d60c54bb4308fee3bb3', # scipy-1.4.1-fix-pthread.patch
],
}),
('mpi4py', '3.0.3', {
'checksums': ['012d716c8b9ed1e513fcc4b18e5af16a8791f51e6d1716baccf988ad355c5a1f'],
}),
('pandas', '1.0.3', {
'checksums': ['32f42e322fb903d0e189a4c10b75ba70d90958cc4f66a1781ed027f1a1d14586'],
}),
('mpmath', '1.1.0', {
'checksums': ['fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6'],
}),
('deap', '1.3.1', {
'checksums': ['11f54493ceb54aae10dde676577ef59fc52d52f82729d5a12c90b0813c857a2f'],
}),
]
sanity_pip_check = True
moduleclass = 'lang'

58
s/SciPy-bundle/SciPy-bundle-2020.03-intel-2020a-Python-3.8.2.eb

@ -1,58 +0,0 @@
# JH 2020
easyblock = 'PythonBundle'
name = 'SciPy-bundle'
version = '2020.03'
versionsuffix = '-Python-%(pyver)s'
homepage = 'https://python.org/'
description = "Bundle of Python packages for scientific software"
toolchain = {'name': 'intel', 'version': '2020a'}
toolchainopts = {'pic': True, 'lowopt': True}
dependencies = [
('Python', '3.8.2'),
('pybind11', '2.4.3', versionsuffix), # required by scipy
]
use_pip = True
exts_default_options = {'source_urls': [PYPI_SOURCE]}
default_easyblock = 'PythonPackage'
# order is important!
exts_list = [
('numpy', '1.18.3', {
'patches': ['numpy-1.18.2-mkl.patch'],
'source_tmpl': '%(name)s-%(version)s.zip',
'checksums': [
'e46e2384209c91996d5ec16744234d1c906ab79a701ce1a26155c9ec890b8dc8', # numpy-1.18.2.zip
'ea25ad5c0148c1398d282f0424e642fb9815a1a80f4512659b018e2adc378bcf', # numpy-1.18.2-mkl.patch
],
}),
('scipy', '1.4.1', {
'patches': ['scipy-1.4.1-fix-pthread.patch'],
'checksums': [
'dee1bbf3a6c8f73b6b218cb28eed8dd13347ea2f87d572ce19b289d6fd3fbc59', # scipy-1.4.1.tar.gz
'4e2162a93caddce63a1aa2dfb6c181774a4f6615950e1d60c54bb4308fee3bb3', # scipy-1.4.1-fix-pthread.patch
],
}),
('mpi4py', '3.0.3', {
'checksums': ['012d716c8b9ed1e513fcc4b18e5af16a8791f51e6d1716baccf988ad355c5a1f'],
}),
('pandas', '1.0.3', {
'checksums': ['32f42e322fb903d0e189a4c10b75ba70d90958cc4f66a1781ed027f1a1d14586'],
}),
('mpmath', '1.1.0', {
'checksums': ['fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6'],
}),
('deap', '1.3.1', {
'checksums': ['11f54493ceb54aae10dde676577ef59fc52d52f82729d5a12c90b0813c857a2f'],
}),
]
sanity_pip_check = True
moduleclass = 'lang'