diff --git a/b/bzip2/bzip2-1.0.6.eb b/b/bzip2/bzip2-1.0.6.eb index 9af575e1..7f9e002b 100644 --- a/b/bzip2/bzip2-1.0.6.eb +++ b/b/bzip2/bzip2-1.0.6.eb @@ -1,7 +1,7 @@ name = 'bzip2' version = '1.0.6' -homepage = 'http://www.bzip.org/' +homepage = 'http://departments.icmab.es/leem/siesta' description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.""" diff --git a/d/Doxygen/Doxygen-1.8.11-intel-2017a.eb b/d/Doxygen/Doxygen-1.8.11-intel-2017a.eb index 3c0fdf85..4bae27ce 100644 --- a/d/Doxygen/Doxygen-1.8.11-intel-2017a.eb +++ b/d/Doxygen/Doxygen-1.8.11-intel-2017a.eb @@ -11,9 +11,9 @@ sources = ['%(namelower)s-%(version)s.src.tar.gz'] source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] builddependencies = [ - ('CMake', '3.7.2'), - ('flex', '2.6.0'), - ('Bison', '3.0.4'), + ('CMake', '3.8.1', '', True), + ('flex', '2.6.0', '', True), + ('Bison', '3.0.4', '', True), ] parallel = 1 diff --git a/f/foss/foss-2017a.eb b/f/foss/foss-2017a.eb new file mode 100644 index 00000000..ae32897c --- /dev/null +++ b/f/foss/foss-2017a.eb @@ -0,0 +1,35 @@ +easyblock = 'Toolchain' + +name = 'foss' +version = '2017a' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +gccver = '6.3.0-2.27' + +blaslib = 'OpenBLAS' +blasver = '0.2.19' +blas = '%s-%s' % (blaslib, blasver) +blassuff = '-LAPACK-3.7.0' + +# toolchain used to build foss dependencies +comp_mpi_tc_name = 'gompi' +comp_mpi_tc = (comp_mpi_tc_name, version) + +# compiler toolchain depencies +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preperation functions +# For binutils, stick to http://wiki.osdev.org/Cross-Compiler_Successful_Builds +dependencies = [ + ('GCC', gccver), + ('OpenMPI', '1.10.7', '', ('GCC', gccver)), + (blaslib, blasver, blassuff, ('GCC', gccver)), + ('FFTW', '3.3.6', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), +] + +moduleclass = 'toolchain' diff --git a/g/gompi/gompi-2017a.eb b/g/gompi/gompi-2017a.eb new file mode 100644 index 00000000..a29ccb09 --- /dev/null +++ b/g/gompi/gompi-2017a.eb @@ -0,0 +1,20 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = '2017a' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +gccver = '6.3.0-2.27' + +# compiler toolchain dependencies +dependencies = [ + ('GCC', gccver), # includes both GCC 6.3.0 and binutils 2.27 + ('OpenMPI', '1.10.7', '', ('GCC', gccver)), +] + +moduleclass = 'toolchain' diff --git a/h/hwloc/hwloc-1.11.7-GCC-6.3.0-2.27.eb b/h/hwloc/hwloc-1.11.7-GCC-6.3.0-2.27.eb new file mode 100644 index 00000000..8f0b8dee --- /dev/null +++ b/h/hwloc/hwloc-1.11.7-GCC-6.3.0-2.27.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.11.7' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction +(across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including +NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various +system attributes such as cache and memory information as well as the locality of I/O devices such as +network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering +information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [('numactl', '2.0.11')] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +moduleclass = 'system' diff --git a/h/hwloc/hwloc-1.11.7-GCC-7.1.0-2.28.eb b/h/hwloc/hwloc-1.11.7-GCC-7.1.0-2.28.eb new file mode 100644 index 00000000..eb5c7561 --- /dev/null +++ b/h/hwloc/hwloc-1.11.7-GCC-7.1.0-2.28.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.11.7' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction +(across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including +NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various +system attributes such as cache and memory information as well as the locality of I/O devices such as +network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering +information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GCC', 'version': '7.1.0-2.28'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [('numactl', '2.0.11')] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +moduleclass = 'system' diff --git a/l/libtool/libtool-2.4.6-GCC-7.1.0-2.28.eb b/l/libtool/libtool-2.4.6-GCC-7.1.0-2.28.eb new file mode 100644 index 00000000..b51deb8c --- /dev/null +++ b/l/libtool/libtool-2.4.6-GCC-7.1.0-2.28.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GCC', 'version': '7.1.0-2.28'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.18', '', True)] + +moduleclass = 'lib' diff --git a/n/netCDF/netCDF-4.4.1-intel-2017a.eb b/n/netCDF/netCDF-4.4.1-intel-2017a.eb index af2e996e..99d2d51a 100644 --- a/n/netCDF/netCDF-4.4.1-intel-2017a.eb +++ b/n/netCDF/netCDF-4.4.1-intel-2017a.eb @@ -16,12 +16,12 @@ source_urls = [ dependencies = [ ('HDF5', '1.8.17'), - ('cURL', '7.49.1'), - ('Szip', '2.1'), + ('cURL', '7.53.1', '', True), + ('Szip', '2.1', '', True), ] builddependencies = [ - ('CMake', '3.7.2'), + ('CMake', '3.8.1', '', True), ('Doxygen', '1.8.11'), ] diff --git a/n/numactl/numactl-2.0.11-GCC-7.1.0-2.28.eb b/n/numactl/numactl-2.0.11-GCC-7.1.0-2.28.eb new file mode 100644 index 00000000..a4bb6fa6 --- /dev/null +++ b/n/numactl/numactl-2.0.11-GCC-7.1.0-2.28.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'numactl' +version = '2.0.11' + +homepage = 'http://oss.sgi.com/projects/libnuma/' +description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. +It does this by supplying a NUMA memory policy to the operating system before running your program. +The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" + +toolchain = {'name': 'GCC', 'version': '7.1.0-2.28'} + +source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] +sources = [SOURCE_TAR_GZ] + +checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] + +sanity_check_paths = { + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} + +moduleclass = 'tools' diff --git a/o/OpenMPI/OpenMPI-1.10.7-GCC-6.3.0-2.27.eb b/o/OpenMPI/OpenMPI-1.10.7-GCC-6.3.0-2.27.eb new file mode 100644 index 00000000..1382fe9f --- /dev/null +++ b/o/OpenMPI/OpenMPI-1.10.7-GCC-6.3.0-2.27.eb @@ -0,0 +1,45 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.10.7' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +dependencies = [('hwloc', '1.11.7')] + +builddependencies = [ + ('Java', '1.8.0_121', '', True) +] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading +configopts += '--with-tm=/opt/pbs/default ' # Enable PBS +configopts += '--enable-mpi-java ' # Java support RT#4090 + +# for PBS Pro 13 +preconfigopts = 'export LIBS="-ldl" && ' + +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] + +libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in libs] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx4_0', + 'OMPI_MCA_oob_tcp_if_include': '10.0.0.0/8', +} + +moduleclass = 'mpi' diff --git a/o/OpenMPI/OpenMPI-1.10.7-GCC-7.1.0-2.28.eb b/o/OpenMPI/OpenMPI-1.10.7-GCC-7.1.0-2.28.eb new file mode 100644 index 00000000..5bde577f --- /dev/null +++ b/o/OpenMPI/OpenMPI-1.10.7-GCC-7.1.0-2.28.eb @@ -0,0 +1,45 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.10.7' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '7.1.0-2.28'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +dependencies = [('hwloc', '1.11.7')] + +builddependencies = [ + ('Java', '1.8.0_121', '', True) +] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading +configopts += '--with-tm=/opt/pbs/default ' # Enable PBS +configopts += '--enable-mpi-java ' # Java support RT#4090 + +# for PBS Pro 13 +preconfigopts = 'export LIBS="-ldl" && ' + +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] + +libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in libs] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx4_0', + 'OMPI_MCA_oob_tcp_if_include': '10.0.0.0/8', +} + +moduleclass = 'mpi' diff --git a/o/OpenMPI/OpenMPI-2.1.1-GCC-7.1.0-2.28.eb b/o/OpenMPI/OpenMPI-2.1.1-GCC-7.1.0-2.28.eb new file mode 100644 index 00000000..a8cd1ae8 --- /dev/null +++ b/o/OpenMPI/OpenMPI-2.1.1-GCC-7.1.0-2.28.eb @@ -0,0 +1,45 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '2.1.1' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '7.1.0-2.28'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +dependencies = [('hwloc', '1.11.7')] + +builddependencies = [ + ('Java', '1.8.0_121', '', True) +] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading +configopts += '--with-tm=/opt/pbs/default ' # Enable PBS +configopts += '--enable-mpi-java ' # Java support RT#4090 + +# for PBS Pro 13 +preconfigopts = 'export LIBS="-ldl" && ' + +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] + +libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in libs] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx4_0', + 'OMPI_MCA_oob_tcp_if_include': '10.0.0.0/8', +} + +moduleclass = 'mpi' diff --git a/x/X11/X11-20160819.eb b/x/X11/X11-20160819.eb index 5c4b34da..88dd1ba9 100644 --- a/x/X11/X11-20160819.eb +++ b/x/X11/X11-20160819.eb @@ -91,7 +91,6 @@ components = [ ('libXdamage', '1.1.4', common_specs), ('libfontenc', '1.1.3', common_specs), ('libXfont', '1.5.1', common_specs), - ('libXft', '2.3.2', common_specs), ('libXi', '1.7.6', common_specs), ('libXinerama', '1.1.3', common_specs), ('libXrandr', '1.5.0', common_specs),