new file: b/Biopython/Biopython-1.76-Py-3.7.eb

new file: b/bzip2/bzip2-1.0.8.eb new file: c/Cython/Cython-0.29.14-Py-3.7.eb new file: c/cairo/cairo-1.17.2.eb modified: e/Eigen/Eigen-3.3.7.eb new file: g/GLib/GLib-2.62.4.eb new file: l/libffi/libffi-3.3.eb new file: "l/libpng/\\" new file: l/libpng/libpng-1.6.37.eb new file: m/Meson/Meson-0.51.2-Py-3.7.eb new file: m/Meson/Meson-0.53.0-Py-3.7.eb new file: n/Ninja/Ninja-1.9.0-Py-3.7.eb modified: n/numpy/numpy-1.18.1-Py-3.6.eb new file: n/numpy/numpy-1.18.1-Py-3.7.eb modified: o/OpenBabel/OpenBabel-2.4.9-GCCcore-6.3.0-Python-3.7.3.eb new file: o/OpenBabel/OpenBabel-3.0.0-Py-3.7.eb new file: p/PCRE/PCRE-8.43.eb modified: p/Py/Py-3.7.eb new file: p/Python/Python-3.7.5-GCC-8.3.0-2.32-base.eb new file: p/phono3py/phono3py-1.18.2-conda.eb new file: p/phonopy/phono3py-1.18.2-conda.eb new file: p/phonopy/phonopy-2.4.2-conda.eb new file: p/pixman/pixman-0.38.4.eb new file: s/SQLite/SQLite-3.30.1.eb new file: s/SWIG/SWIG-3.0.12-Py-3.7.eb new file: s/SWIG/SWIG-4.0.1-Py-3.7.eb new file: t/Tcl/Tcl-8.6.10.eb new file: u/util-linux/util-linux-2.34.eb deleted: p/phono3py/phono3py-1.18.2-Py-3.6.eb
2025-04-04 06:11:36 +01:00 · 2020-01-09 11:14:33 +01:00 · 2020-01-09 11:14:33 +01:00 · d3cb8adf17
commit d3cb8adf17
parent f93ed09db1
29 changed files with 774 additions and 33 deletions
--- a/b/Biopython/Biopython-1.76-Py-3.7.eb
+++ b/b/Biopython/Biopython-1.76-Py-3.7.eb
@ -0,0 +1,32 @@
+# IT4Innovations 2019
+
+easyblock = "PythonPackage"
+name = 'Biopython'
+version = '1.76'
+
+homepage = 'http://www.biopython.org'
+description = """Biopython is a set of freely available tools for biological
+ local_computation written in Python by an international team of developers. It is
+ a distributed collaborative effort to develop Python libraries and
+ applications which address the needs of current and future work in
+ bioinformatics. """
+
+toolchain = {'name': 'Py', 'version': '3.7'}
+
+source_urls = ['http://biopython.org/DIST']
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [
+    ('numpy', '1.18.1'),
+]
+
+sanity_check_paths = {
+    'files': [],
+    'dirs': ['lib/python3.7/site-packages/%(namelower)s-%(version)s-py3.7.egg-info'],
+}
+
+sanity_check_commands = ["python -c 'import Bio.MarkovModel'"]
+
+options = {'modulename': 'Bio'}
+
+moduleclass = 'python'
--- a/b/bzip2/bzip2-1.0.8.eb
+++ b/b/bzip2/bzip2-1.0.8.eb
@ -0,0 +1,33 @@
+# IT4Innovations 2019
+name = 'bzip2'
+version = '1.0.8'
+
+homepage = 'https://sourceware.org/bzip2'
+
+description = """
+ bzip2 is a freely available, patent free, high-quality data compressor. It
+ typically compresses files to within 10% to 15% of the best available
+ techniques (the PPM family of statistical compressors), whilst being around
+ twice as fast at compression and six times faster at decompression.
+"""
+
+toolchain = SYSTEM
+toolchainopts = {'pic': True}
+
+source_urls = ['https://sourceware.org/pub/bzip2/']
+sources = [SOURCE_TAR_GZ]
+patches = ['bzip2-1.0.6-pkgconfig.patch']
+checksums = [
+    'ab5a03176ee106d3f0fa90e381da478ddae405918153cca248e682cd0c4a2269',  # bzip2-1.0.8.tar.gz
+    '5a823e820b332eca3684416894f58edc125ac3dace9f46e62f98e45362aa8a6d',  # bzip2-1.0.6-pkgconfig.patch
+]
+
+builddependencies = [
+    ('CMake', '3.16.2'),
+]
+
+buildopts = 'CC="gcc" CFLAGS="-fpic -fPIC -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64"'
+
+parallel = 1
+
+moduleclass = 'tools'
--- a/c/Cython/Cython-0.29.14-Py-3.7.eb
+++ b/c/Cython/Cython-0.29.14-Py-3.7.eb
@ -0,0 +1,22 @@
+# IT4Innovations 2020
+
+easyblock = 'PythonPackage'
+
+name = 'Cython'
+version = '0.29.14'
+
+homepage = 'https://pypi.python.org/pypi/Cython/'
+description = """The Cython language makes writing C extensions for the Python language as easy as Python itself.
+Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations."""
+
+toolchain = {'name': 'Py', 'version': '3.7'}
+
+source_urls = [PYPI_SOURCE]
+sources = [SOURCE_TAR_GZ]
+
+sanity_check_paths = {
+    'files': ['bin/cygdb', 'bin/cython', 'bin/cythonize'],
+    'dirs': ['bin', 'lib']
+}
+
+moduleclass = 'lang'
--- a/c/cairo/cairo-1.17.2.eb
+++ b/c/cairo/cairo-1.17.2.eb
@ -0,0 +1,68 @@
+# IT4Innovations 2020
+
+easyblock = 'ConfigureMake'
+
+name = 'cairo'
+version = '1.17.2'
+
+homepage = 'http://cairographics.org'
+description = """Cairo is a 2D graphics library with support for multiple output devices.
+ Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers,
+ PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB"""
+
+toolchain = SYSTEM
+
+source_urls = ['https://cairographics.org/snapshots/']
+sources = [SOURCE_TAR_XZ]
+
+dependencies = [
+    ('bzip2', '1.0.8'),
+    ('zlib', '1.2.11'),
+    ('libpng', '1.6.37'),
+#    ('freetype', '2.7.1', '-libpng-1.6.29'),
+    ('pixman', '0.38.4'),
+#    ('expat', '2.2.0'),
+    ('GLib', '2.62.4'),
+    ('X11', '20190717'),
+]
+
+# disable symbol lookup, which requires -lbfd, to avoid link issues with
+# (non-PIC) libiberty.a provided by GCC
+configopts = "--enable-symbol-lookup=no --enable-gobject=yes --enable-svg=yes --enable-tee=yes --enable-xlib-xcb "
+
+# workaround for "hidden symbol .* in .* is referenced by DSO" and "ld:
+# final link failed: Bad value"
+buildopts = 'LD="$CC" LDFLAGS="$LDFLAGS"'
+
+sanity_check_paths = {
+    'files': [
+        'bin/cairo-trace',
+        'lib/cairo/libcairo-trace.so',
+        'lib/cairo/libcairo-trace.a',
+        'lib/libcairo.a',
+        'lib/libcairo-gobject.a',
+        'lib/libcairo-script-interpreter.a',
+        'lib/libcairo-gobject.so',
+        'lib/libcairo-script-interpreter.so',
+        'lib/libcairo.so'] +
+    [
+        'include/cairo/cairo%s.h' %
+        x for x in [
+            '',
+            '-deprecated',
+            '-features',
+            '-ft',
+            '-gobject',
+            '-pdf',
+            '-ps',
+            '-script',
+            '-script-interpreter',
+            '-svg',
+            '-version',
+            '-xcb',
+            '-xlib',
+            '-xlib-xrender']],
+    'dirs': ['lib/pkgconfig'],
+}
+
+moduleclass = 'vis'
--- a/e/Eigen/Eigen-3.3.7.eb
+++ b/e/Eigen/Eigen-3.3.7.eb
@ -13,7 +13,7 @@ source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get']
 sources = ['%(version)s.tar.bz2']

 dependencies = [
-   ('CMake', '3.13.1'),
+   ('CMake', '3.16.2'),
 ]

 moduleclass = 'math'
--- a/g/GLib/GLib-2.62.4.eb
+++ b/g/GLib/GLib-2.62.4.eb
@ -0,0 +1,44 @@
+# IT4Innovations 2020
+
+easyblock = 'MesonNinja'
+
+name = 'GLib'
+version = '2.62.4'
+
+homepage = 'http://www.gtk.org/'
+description = """GLib is one of the base libraries of the GTK+ project"""
+
+toolchain = SYSTEM
+toolchainopts = {'pic': True}
+
+source_urls = ['http://ftp.gnome.org/pub/gnome/sources/glib/%(version_major_minor)s/']
+sources = ['glib-%(version)s.tar.xz']
+
+builddependencies = [
+    ('Meson', '0.53.0', '', ('Py', '3.7')),
+    ('Ninja', '1.9.0', '', ('Py', '3.7')),
+    ('binutils', '2.32'),
+    ('pkg-config', '0.29.2'),
+]
+
+dependencies = [
+    ('libffi', '3.2.1'),
+    ('gettext', '0.20.1'),
+    ('libxml2', '2.9.9'),
+    ('PCRE', '8.43'),
+    ('util-linux', '2.34'),
+]
+
+# avoid using hardcoded path to Python binary in build step
+preconfigopts = "export PYTHON=python && "
+
+configopts = "--buildtype=release --default-library=both "
+
+fix_python_shebang_for = ['bin/*']
+
+sanity_check_paths = {
+    'files': ['lib/libglib-%(version_major)s.0.a', 'lib/libglib-%%(version_major)s.0.%s' % SHLIB_EXT],
+    'dirs': ['bin', 'include'],
+}
+
+moduleclass = 'vis'
--- a/l/libffi/libffi-3.3.eb
+++ b/l/libffi/libffi-3.3.eb
@ -0,0 +1,31 @@
+# IT4Innovations 2020
+
+easyblock = 'ConfigureMake'
+
+name = 'libffi'
+version = '3.3'
+
+homepage = 'http://sourceware.org/libffi/'
+description = """The libffi library provides a portable, high level programming interface to various calling
+conventions. This allows a programmer to call any function specified by a call interface description at run-time."""
+
+toolchain = SYSTEM
+
+source_urls = [
+    'ftp://sourceware.org/pub/libffi/',
+    'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/',
+]
+sources = [SOURCELOWER_TAR_GZ]
+
+sanity_check_paths = {
+    'files': [
+        ('lib/libffi.%s' %
+         SHLIB_EXT,
+         'lib64/libffi.%s' %
+         SHLIB_EXT),
+        ('lib/libffi.a',
+         'lib64/libffi.a')],
+    'dirs': [],
+}
+
+moduleclass = 'lib'
--- a/l/libpng/\
+++ b/l/libpng/\
@ -0,0 +1,23 @@
+# IT4Innovations 2020
+
+easyblock = 'ConfigureMake'
+
+name = 'libpng'
+version = '1.6.37'
+
+homepage = 'http://www.libpng.org/pub/png/libpng.html'
+description = "libpng is the official PNG reference library"
+
+toolchain = SYSTEM
+toolchainopts = {'pic': True}
+
+source_urls = [SOURCEFORGE_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [('zlib', '1.2.11')]
+
+preconfigopts = 'export LDFLAGS="-L/apps/all/zlib/1.2.11/lib" CPPFLAGS="-I/apps/all/zlib/1.2.11/include" &&'
+
+configopts = "--with-pic"
+
+moduleclass = 'lib'
--- a/l/libpng/libpng-1.6.37.eb
+++ b/l/libpng/libpng-1.6.37.eb
@ -0,0 +1,23 @@
+# IT4Innovations 2020
+
+easyblock = 'ConfigureMake'
+
+name = 'libpng'
+version = '1.6.37'
+
+homepage = 'http://www.libpng.org/pub/png/libpng.html'
+description = "libpng is the official PNG reference library"
+
+toolchain = SYSTEM
+toolchainopts = {'pic': True}
+
+source_urls = [SOURCEFORGE_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [('zlib', '1.2.11')]
+
+preconfigopts = 'export LDFLAGS="-L/apps/all/zlib/1.2.11/lib" CPPFLAGS="-I/apps/all/zlib/1.2.11/include" &&'
+
+configopts = "--with-pic"
+
+moduleclass = 'lib'
--- a/m/Meson/Meson-0.51.2-Py-3.7.eb
+++ b/m/Meson/Meson-0.51.2-Py-3.7.eb
@ -0,0 +1,30 @@
+# IT4Innovations 2019
+
+easyblock = 'PythonPackage'
+
+name = 'Meson'
+version = '0.51.2'
+
+homepage = 'https://mesonbuild.com'
+description = "Meson is a cross-platform build system designed to be both as fast and as user friendly as possible."
+
+toolchain = {'name': 'Py', 'version': '3.7'}
+
+source_urls = [PYPI_LOWER_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [
+    ('Ninja', '1.9.0'),
+]
+
+download_dep_fail = True
+use_pip = True
+
+options = {'modulename': 'mesonbuild'}
+
+sanity_check_paths = {
+    'files': ['bin/meson'],
+    'dirs': ['lib/python3.7/site-packages'],
+}
+
+moduleclass = 'tools'
--- a/m/Meson/Meson-0.53.0-Py-3.7.eb
+++ b/m/Meson/Meson-0.53.0-Py-3.7.eb
@ -0,0 +1,30 @@
+# IT4Innovations 2019
+
+easyblock = 'PythonPackage'
+
+name = 'Meson'
+version = '0.53.0'
+
+homepage = 'https://mesonbuild.com'
+description = "Meson is a cross-platform build system designed to be both as fast and as user friendly as possible."
+
+toolchain = {'name': 'Py', 'version': '3.7'}
+
+source_urls = [PYPI_LOWER_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [
+    ('Ninja', '1.9.0'),
+]
+
+download_dep_fail = True
+use_pip = True
+
+options = {'modulename': 'mesonbuild'}
+
+sanity_check_paths = {
+    'files': ['bin/meson'],
+    'dirs': ['lib/python3.7/site-packages'],
+}
+
+moduleclass = 'tools'
--- a/n/Ninja/Ninja-1.9.0-Py-3.7.eb
+++ b/n/Ninja/Ninja-1.9.0-Py-3.7.eb
@ -0,0 +1,26 @@
+# IT4Innovations 2020
+
+easyblock = 'CmdCp'
+
+name = 'Ninja'
+version = '1.9.0'
+
+homepage = 'https://ninja-build.org/'
+description = "Ninja is a small build system with a focus on speed."
+
+toolchain = {'name': 'Py', 'version': '3.7'}
+
+source_urls = ['https://github.com/ninja-build/ninja/archive/']
+sources = ['v%(version)s.tar.gz']
+checksums = ['5d7ec75828f8d3fd1a0c2f31b5b0cea780cdfe1031359228c428c1a48bfcd5b9']
+
+cmds_map = [('.*', "./configure.py --bootstrap")]
+
+files_to_copy = [(['ninja'], 'bin')]
+
+sanity_check_paths = {
+    'files': ['bin/ninja'],
+    'dirs': [],
+}
+
+moduleclass = 'tools'
--- a/n/numpy/numpy-1.18.1-Py-3.6.eb
+++ b/n/numpy/numpy-1.18.1-Py-3.6.eb
@ -8,7 +8,7 @@ version = '1.18.1'
 homepage = 'http://www.numpy.org'
 description = """NumPy is the fundamental package needed for scientific local_computing with Python."""

-toolchain = {'name': 'Py', 'version': '3.7'}
+toolchain = {'name': 'Py', 'version': '3.6'}

 source_urls = ['https://github.com/numpy/numpy/releases/download/v%(version)s']
 sources = [SOURCE_TAR_GZ]
@ -23,7 +23,7 @@ dependencies = [
 ]

 sanity_check_paths = {'files': [], 'dirs': [
-    'lib/python3.7/site-packages/%(name)s-%(version)s-py3.7-linux-x86_64.egg/numpy'], }
+    'lib/python3.6/site-packages/%(name)s-%(version)s-py3.6-linux-x86_64.egg/numpy'], }

 sanity_check_commands = [
    ('python', '-c "import numpy; assert(numpy.__version__ == \'%(version)s\')"')]
--- a/n/numpy/numpy-1.18.1-Py-3.7.eb
+++ b/n/numpy/numpy-1.18.1-Py-3.7.eb
@ -0,0 +1,32 @@
+# IT4Innovations 2020
+
+easyblock = 'PythonPackage'
+
+name = 'numpy'
+version = '1.18.1'
+
+homepage = 'http://www.numpy.org'
+description = """NumPy is the fundamental package needed for scientific local_computing with Python."""
+
+toolchain = {'name': 'Py', 'version': '3.7'}
+
+source_urls = ['https://github.com/numpy/numpy/releases/download/v%(version)s']
+sources = [SOURCE_TAR_GZ]
+
+local_patch = [
+    'numpy-1.8.1-mkl.local_patch',
+    'numpy-1.11.0-sse42.local_patch'
+]
+
+dependencies = [
+    ('mkl', '2019.5.281', '', True),
+    ('Cython', '0.29.14'),
+]
+
+sanity_check_paths = {'files': [], 'dirs': [
+    'lib/python3.7/site-packages/%(name)s-%(version)s-py3.7-linux-x86_64.egg/numpy'], }
+
+sanity_check_commands = [
+    ('python', '-c "import numpy; assert(numpy.__version__ == \'%(version)s\')"')]
+
+moduleclass = 'python'
--- a/o/OpenBabel/OpenBabel-2.4.9-GCCcore-6.3.0-Python-3.7.3.eb
+++ b/o/OpenBabel/OpenBabel-2.4.9-GCCcore-6.3.0-Python-3.7.3.eb
@ -2,7 +2,7 @@

 name = 'OpenBabel'
 version = '2.4.9'
-versionsuffix = '-Python-%(local_pyver)s'
+versionsuffix = '-Python-3.7.3'

 homepage = 'http://openbabel.org'
 description = """Open Babel is a chemical toolbox designed to speak the many
--- a/o/OpenBabel/OpenBabel-3.0.0-Py-3.7.eb
+++ b/o/OpenBabel/OpenBabel-3.0.0-Py-3.7.eb
@ -0,0 +1,39 @@
+# IT4Innovations 2019
+
+name = 'OpenBabel'
+version = '3.0.0'
+
+homepage = 'http://openbabel.org'
+description = """Open Babel is a chemical toolbox designed to speak the many
+ languages of chemical data. It's an open, collaborative project allowing anyone
+ to search, convert, analyze, or store data from molecular modeling, chemistry,
+ solid-state materials, biochemistry, or related areas."""
+
+toolchain = {'name': 'Py', 'version': '3.7'}
+toolchainopts = {'optarch': True}
+
+source_urls = ['https://github.com/openbabel/openbabel/archive']
+sources = ['openbabel-3-0-0.tar.gz']
+
+configopts = "-DPYTHON_BINDINGS=ON -DRUN_SWIG=ON"
+
+builddependencies = [
+    ('CMake', '3.16.2', '', True)
+]
+
+dependencies = [
+    ('zlib', '1.2.11', '', True),
+    ('libxml2', '2.9.9', '', True),
+    ('Eigen', '3.3.7', '', True),
+    ('cairo', '1.17.2', '', True),
+    ('SWIG', '3.0.12'),
+]
+
+#runtest = 'test'
+
+sanity_check_paths = {
+    'files': ['bin/obabel', 'lib/python3.7/site-packages/openbabel/openbabel.py'],
+    'dirs': ['bin', 'include', 'lib'],
+}
+
+moduleclass = 'chem'
--- a/p/PCRE/PCRE-8.43.eb
+++ b/p/PCRE/PCRE-8.43.eb
@ -0,0 +1,20 @@
+# IT4Innovations 2020
+
+easyblock = 'ConfigureMake'
+
+name = 'PCRE'
+version = '8.43'
+
+homepage = 'http://www.pcre.org/'
+description = """The PCRE library is a set of functions that implement regular expression pattern matching using
+ the same syntax and semantics as Perl 5."""
+
+toolchain = SYSTEM
+toolchainopts = {'pic': True}
+
+source_urls = [SOURCEFORGE_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+
+configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties"
+
+moduleclass = 'devel'
--- a/p/Py/Py-3.7.eb
+++ b/p/Py/Py-3.7.eb
@ -1,4 +1,4 @@
-# IT4Innovations 2019
+# IT4Innovations 2020

 easyblock = "Toolchain"

@ -6,13 +6,13 @@ name = 'Py'
 version = '3.7'

 homepage = 'https://www.python.org'
-description = """Python 3.6 toolchain"""
+description = """Python 3.7 toolchain"""

 toolchain = SYSTEM

 dependencies = [
-    ('Python', '3.7.3', '-base', ('GCCcore', '6.3.0')),
-    ('GCC', '6.3.0-2.27'),
+    ('Python', '3.7.5', '-base', ('GCC', '8.3.0-2.32')),
+    ('GCC', '8.3.0-2.32'),
 ]

 moduleclass = 'toolchain'
--- a/p/Python/Python-3.7.5-GCC-8.3.0-2.32-base.eb
+++ b/p/Python/Python-3.7.5-GCC-8.3.0-2.32-base.eb
@ -0,0 +1,62 @@
+# IT4Innovations 2020
+
+name = 'Python'
+version = '3.7.5'
+versionsuffix = '-base'
+
+homepage = 'http://python.org/'
+description = """Python is a programming language that lets you work more quickly and integrate your systems
+ more effectively."""
+
+toolchain = {'name': 'GCC', 'version': '8.3.0-2.32'}
+toolchainopts = {'pic': True}
+
+source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/']
+sources = [SOURCE_TGZ]
+
+dependencies = [
+    ('bzip2', '1.0.8', '', True),  # required for bz2 package in Python stdlib
+    ('zlib', '1.2.11', '', True),
+    ('libreadline', '8.0', '', True),
+    ('ncurses', '6.1', '', True),
+    ('SQLite', '3.30.1', '', True),
+    ('XZ', '5.2.4', '', True),
+    ('GMP', '6.1.2', '', True),  # required for pycrypto
+    ('libffi', '3.3', '', True),  # required for cryptography
+    # OS dependency should be preferred if the os version is more recent then this version,
+    # it's nice to have an up to date openssl for security reasons
+    # Python 3.7 requires OpenSSL >= 1.0.2, uncomment line below if OS version is too old (e.g. CentOS 6)
+    # ('OpenSSL', '1.1.0j'),
+]
+
+#osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')]
+
+# symlink 'pip' command to 'pip3' that is included with Python installation
+# required so we can update pip to version included in extensions, using pip
+installopts = " && ln -s %(installdir)s/bin/pip3 %(installdir)s/bin/pip"
+
+#exts_default_options = {
+#    'download_dep_fail': True,
+#    'use_pip': True,
+#}
+
+# order is important!
+# package versions updated Mar 15th 2019
+exts_list = [
+    ('pip', '19.3.1', {
+        'source_urls': ['https://pypi.python.org/packages/source/p/pip/'],
+        # don't use --ignore-installed, i.e. let pip remove older pip version included with Python
+        'pip_ignore_installed': False,
+    }),
+    ('setuptools', '44.0.0', {
+        'source_urls': ['https://pypi.python.org/packages/source/s/setuptools'],
+        'source_tmpl': '%(name)s-%(version)s.zip',
+        # don't use --ignore-installed, i.e. let pip remove older setuptools version included with Python
+        'pip_ignore_installed': False,
+    }),
+    ('wheel', '0.33.6', {
+        'source_urls': ['https://pypi.python.org/packages/source/w/wheel'],
+    })
+]
+
+moduleclass = 'lang'
--- a/p/phono3py/phono3py-1.18.2-Py-3.6.eb
+++ b/p/phono3py/phono3py-1.18.2-Py-3.6.eb
@ -1,25 +0,0 @@
-# IT4Innovations 2020
-
-easyblock = "Conda"
-
-name = 'phono3py'
-version = '1.18.2'
-
-homepage = 'http://phonopy.sourceforge.net/phono3py/index.html'
-description = """This software calculates phonon-phonon interaction related properties"""
-
-toolchain = {'name': 'Py', 'version': '3.6'}
-
-requirements = "%(name)s=%(version)s"
-channels = ['atztogo ']
-
-builddependencies = [
-     ('Anaconda3', '2019.10', '', True),
-]
-
-dependencies = [
-    ('phonopy', '2.4.2'),
-    ('intel', '2019a', '', True),
-]
-
-moduleclass = 'phys'
--- a/p/phono3py/phono3py-1.18.2-conda.eb
+++ b/p/phono3py/phono3py-1.18.2-conda.eb
@ -0,0 +1,26 @@
+# IT4Innovations 2020
+
+easyblock = "Conda"
+
+name = 'phono3py'
+version = '1.18.2+1'
+versionsuffix = '-conda'
+
+homepage = 'http://phonopy.sourceforge.net/phono3py/index.html'
+description = """This software calculates phonon-phonon interaction related properties"""
+
+toolchain = SYSTEM
+
+dependencies = [
+    ('Anaconda3', '2019.10'),
+]
+
+requirements = "%(namelower)s=%(version)s python=3.7"
+channels = ['atztogo']
+
+sanity_check_paths = {
+    'files': ['bin/phono3py', 'bin/phonopy'],
+    'dirs': ['bin', 'lib']
+}
+
+moduleclass = 'phys'
--- a/p/phonopy/phono3py-1.18.2-conda.eb
+++ b/p/phonopy/phono3py-1.18.2-conda.eb
@ -0,0 +1,26 @@
+# IT4Innovations 2020
+
+easyblock = "Conda"
+
+name = 'phono3py'
+version = '1.18.2+1'
+versionsuffix = '-conda'
+
+homepage = 'http://phonopy.sourceforge.net/phono3py/index.html'
+description = """This software calculates phonon-phonon interaction related properties"""
+
+toolchain = SYSTEM
+
+dependencies = [
+    ('Anaconda3', '2019.10'),
+]
+
+requirements = "%(namelower)s=%(version)s python=3.7"
+channels = ['atztogo']
+
+sanity_check_paths = {
+    'files': ['bin/phono3py', 'bin/phonopy'],
+    'dirs': ['bin', 'lib']
+}
+
+moduleclass = 'phys'
--- a/p/phonopy/phonopy-2.4.2-conda.eb
+++ b/p/phonopy/phonopy-2.4.2-conda.eb
@ -0,0 +1,26 @@
+# IT4Innovations 2020
+
+easyblock = "Conda"
+
+name = 'phonopy'
+version = '2.4.2'
+versionsuffix = '-conda'
+
+homepage = 'http://phonopy.sourceforge.net/phono3py/index.html'
+description = """This software calculates phonon-phonon interaction related properties"""
+
+toolchain = SYSTEM
+
+dependencies = [
+    ('Anaconda3', '2019.10'),
+]
+
+requirements = "%(namelower)s=%(version)s python=3.7"
+channels = ['atztogo']
+
+sanity_check_paths = {
+    'files': [],
+    'dirs': ['bin', 'lib']
+}
+
+moduleclass = 'phys'
--- a/p/pixman/pixman-0.38.4.eb
+++ b/p/pixman/pixman-0.38.4.eb
@ -0,0 +1,22 @@
+# IT4Innovations 2020
+
+easyblock = 'ConfigureMake'
+
+name = 'pixman'
+version = '0.38.4'
+
+homepage = 'http://www.pixman.org/'
+description = """Pixman is a low-level software library for pixel manipulation, providing features such as image
+local_compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server."""
+
+toolchain = SYSTEM
+
+source_urls = ['http://cairographics.org/releases/']
+sources = [SOURCE_TAR_GZ]
+
+sanity_check_paths = {
+    'files': ['lib/libpixman-1.%s' % SHLIB_EXT],
+    'dirs': []
+}
+
+moduleclass = 'vis'
--- a/s/SQLite/SQLite-3.30.1.eb
+++ b/s/SQLite/SQLite-3.30.1.eb
@ -0,0 +1,39 @@
+# IT4Innovations 2020
+
+easyblock = 'ConfigureMake'
+
+name = 'SQLite'
+version = '3.30.1'
+
+homepage = 'http://www.sqlite.org/'
+description = 'SQLite: SQL Database Engine in a C Library'
+
+toolchain = SYSTEM
+
+source_urls = ['http://www.sqlite.org/2019/']
+local_version_minor_etc = version.split('.')[1:]
+local_version_minor_etc += '0' * (3 - len(local_version_minor_etc))
+local_version_str = '%(version_major)s' + ''.join('%02d' % int(x)
+                                            for x in local_version_minor_etc)
+sources = [
+    'sqlite-autoconf-%s.tar.gz' % local_version_str,
+    'sqlite-amalgamation-%s.zip' % local_version_str,
+]
+
+dependencies = [
+    ('libreadline', '8.0'),
+    ('Tcl', '8.6.10'),
+]
+
+sanity_check_paths = {
+    'files': [
+        'bin/sqlite3',
+        'include/sqlite3ext.h',
+        'include/sqlite3.h',
+        'lib/libsqlite3.a',
+        'lib/libsqlite3.%s' %
+        SHLIB_EXT],
+    'dirs': ['lib/pkgconfig'],
+}
+
+moduleclass = 'devel'
--- a/s/SWIG/SWIG-3.0.12-Py-3.7.eb
+++ b/s/SWIG/SWIG-3.0.12-Py-3.7.eb
@ -0,0 +1,20 @@
+# IT4Innovations 2020
+
+name = 'SWIG'
+version = '3.0.12'
+
+homepage = 'http://www.swig.org/'
+description = """SWIG is a software development tool that connects programs written in C and C++ with
+ a variety of high-level programming languages."""
+
+toolchain = {'name': 'Py', 'version': '3.7'}
+toolchainopts = {'pic': True, 'opt': True, 'optarch': True}
+
+source_urls = [SOURCEFORGE_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [
+    ('PCRE', '8.43', '', True),
+]
+
+moduleclass = 'devel'
--- a/s/SWIG/SWIG-4.0.1-Py-3.7.eb
+++ b/s/SWIG/SWIG-4.0.1-Py-3.7.eb
@ -0,0 +1,20 @@
+# IT4Innovations 2020
+
+name = 'SWIG'
+version = '4.0.1'
+
+homepage = 'http://www.swig.org/'
+description = """SWIG is a software development tool that connects programs written in C and C++ with
+ a variety of high-level programming languages."""
+
+toolchain = {'name': 'Py', 'version': '3.7'}
+toolchainopts = {'pic': True, 'opt': True, 'optarch': True}
+
+source_urls = [SOURCEFORGE_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [
+    ('PCRE', '8.43', '', True),
+]
+
+moduleclass = 'devel'
--- a/t/Tcl/Tcl-8.6.10.eb
+++ b/t/Tcl/Tcl-8.6.10.eb
@ -0,0 +1,27 @@
+# IT4Innovations 2019
+easyblock = 'ConfigureMake'
+
+name = 'Tcl'
+version = '8.6.10'
+
+homepage = 'http://www.tcl.tk/'
+description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language,
+suitable for a very wide range of uses, including web and desktop applications, networking, administration,
+testing and many more."""
+
+toolchain = SYSTEM
+
+source_urls = ["http://prdownloads.sourceforge.net/tcl"]
+sources = ['%(namelower)s%(version)s-src.tar.gz']
+
+dependencies = [
+    ('zlib', '1.2.11'),
+]
+
+configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"'
+
+runtest = 'test'
+
+start_dir = 'unix'
+
+moduleclass = 'lang'
--- a/u/util-linux/util-linux-2.34.eb
+++ b/u/util-linux/util-linux-2.34.eb
@ -0,0 +1,45 @@
+# IT4Innovations 2020
+
+easyblock = 'ConfigureMake'
+
+name = 'util-linux'
+version = '2.34'
+
+homepage = 'http://www.kernel.org/pub/linux/utils/util-linux'
+
+description = "Set of Linux utilities"
+
+toolchain = SYSTEM
+toolchainopts = {'pic': True}
+
+source_urls = ['%s/v%%(version_major_minor)s' % homepage]
+sources = [SOURCELOWER_TAR_GZ]
+
+# disable account related utilities (they need OS dependent pam-devel files)
+# disable wall and friends (requires group changing permissions for install user)
+# install systemd service files in install dir
+# install bash completion files in install dir
+configopts = "--disable-chfn-chsh --disable-login --disable-su --disable-rfkill "
+configopts += "--disable-wall --disable-use-tty-group "
+configopts += "--disable-makeinstall-chown --disable-makeinstall-setuid "
+configopts += "--with-systemdsystemunitdir='${prefix}/systemd' "
+configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/completions' "
+# disable building Python bindings (since we don't include Python as a dep)
+configopts += "--without-python "
+
+
+builddependencies = [
+    ('binutils', '2.27'),
+]
+
+dependencies = [
+    ('ncurses', '6.1'),
+    ('zlib', '1.2.11'),
+]
+
+sanity_check_paths = {
+    'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']],
+    'dirs': ['include', 'bin', 'share', 'sbin'],
+}
+
+moduleclass = 'tools'