new file: a/ABySS/ABySS-2.0.3-foss-2018a-Py-2.7.eb

new file:   n/numpy/numpy-1.14.2-Py-2.7-test.eb
	new file:   p/phono3py/phono3py-1.11.13.35-Py-2.7-test.eb
	new file:   p/phono3py/phono3py-1.11.13.35-Py-2.7.eb
	new file:   p/phono3py/phono3py-1.12.9.5-Py-2.7.eb
	new file:   p/phonopy/phonopy-1.12.6.66-Py-2.7.eb
	new file:   z/zsh/zsh-5.2-foss-2018b.eb
	deleted:    p/phono3py/phono3py-1.12.7.46-Py-2.7.eb

a/ABySS/ABySS-2.0.3-foss-2018a-Py-2.7.eb

@@ -0,0 +1,31 @@
+easyblock = 'ConfigureMake'
+
+name = 'ABySS'
+version = '2.0.3'
+
+homepage = 'http://www.bcgsc.ca/platform/bioinfo/software/abyss'
+description = """Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"""
+
+toolchain = {'name': 'foss', 'version': '2018a'}
+toolchainopts = {'usempi': True}
+
+source_urls = ['https://github.com/bcgsc/abyss/releases/download/%(version)s/']
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [
+    ('Boost', '1.66.0', '-Py-2.7'),
+    ('sparsehash', '2.0.3'),
+    ('SQLite', '3.21.0', '', True),
+    ('pigz', '2.4', '', ('GCC', '6.3.0-2.27')),
+    ('zsh', '5.2'),
+]
+
+configopts = '--enable-maxk=256 --with-boost=$EBROOTBOOST/include '
+configopts += '--with-mpi=$EBROOTOPENMPI --with-sqlite=$EBROOTSQLITE3'
+
+sanity_check_paths = {
+    'files': ["bin/ABYSS", "bin/ABYSS-P"],
+    'dirs': []
+}
+
+moduleclass = 'bio'

n/numpy/numpy-1.14.2-Py-2.7-test.eb

@@ -0,0 +1,33 @@
+# IT4Innovations 2018
+
+easyblock = 'PythonPackage'
+
+name = 'numpy'
+version = '1.14.2'
+versionsuffix = '-test'
+
+homepage = 'http://www.numpy.org'
+description = """NumPy is the fundamental package needed for scientific computing with Python."""
+
+toolchain = {'name': 'Py', 'version': '2.7'}
+
+source_urls = ['https://github.com/numpy/numpy/releases/download/v%(version)s']
+sources = [SOURCE_TAR_GZ]
+
+patch = [
+    'numpy-1.8.1-mkl.patch',
+    'numpy-1.11.0-sse42.patch'
+]
+
+dependencies = [
+    ('mkl', '2017.4.239', '', True),
+]
+
+sanity_check_paths = {
+    'files': [],
+    'dirs': ['lib/python2.7/site-packages/%(name)s-%(version)s-py2.7-linux-x86_64.egg/numpy'],
+}
+
+sanity_check_commands = [('python', '-c "import numpy; assert(numpy.__version__ == \'%(version)s\')"')]
+
+moduleclass = 'python'

p/phono3py/phono3py-1.11.13.35-Py-2.7-test.eb

@@ -3,15 +3,16 @@
 easyblock = "PythonPackage"
 
 name = 'phono3py'
-version = '1.12.7.46'
+version = '1.11.13.35'
+versionsuffix = '-test'
 
 homepage = 'http://phonopy.sourceforge.net/phono3py/index.html'
 description = """This software calculates phonon-phonon interaction related properties"""
 
 toolchain = {'name': 'Py', 'version': '2.7'}
 
-source_urls = ['https://pypi.python.org/packages/a5/93/3a9cc9f134ba1f7aa246a27c8a02137e7f9a7311df87ae656bba9051c6df/']
-sources = ['%(name)s-%(version)s.tar.gz']
+sources = [SOURCELOWER_TAR_GZ]
+source_urls = ['http://sourceforge.net/projects/phonopy/files/phono3py/']
 
 prebuildopts = 'python setup.py build #' # notice the hash hack to override setup.py
 preinstallopts = 'python setup.py install --prefix=%(installdir)s #' # another hack

p/phono3py/phono3py-1.11.13.35-Py-2.7.eb

@@ -0,0 +1,30 @@
+# IT4Innovations 2018
+
+easyblock = "PythonPackage"
+
+name = 'phono3py'
+version = '1.11.13.35'
+
+homepage = 'http://phonopy.sourceforge.net/phono3py/index.html'
+description = """This software calculates phonon-phonon interaction related properties"""
+
+toolchain = {'name': 'Py', 'version': '2.7'}
+
+sources = [SOURCELOWER_TAR_GZ]
+source_urls = ['http://sourceforge.net/projects/phonopy/files/phono3py/']
+
+prebuildopts = 'python setup.py build #' # notice the hash hack to override setup.py
+preinstallopts = 'python setup.py install --prefix=%(installdir)s #' # another hack
+skipsteps = ['test']
+options = {'modulename': 'phonopy'}
+
+dependencies = [
+    ('OpenBLAS', '0.2.19', '-GCC-6.3.0-2.27-LAPACK-3.7.0', True),
+    ('numpy', '1.13.3'),
+    ('h5py', '2.7.1'),
+    ('matplotlib', '2.1.1'),
+    ('PyYAML', '3.12'),
+    ('phonopy', '1.12.4.11'),
+]
+
+moduleclass = 'phys'

p/phono3py/phono3py-1.12.9.5-Py-2.7.eb

@@ -0,0 +1,30 @@
+# IT4Innovations 2018
+
+easyblock = "PythonPackage"
+
+name = 'phono3py'
+version = '1.12.9.5'
+
+homepage = 'http://phonopy.sourceforge.net/phono3py/index.html'
+description = """This software calculates phonon-phonon interaction related properties"""
+
+toolchain = {'name': 'Py', 'version': '2.7'}
+
+sources = [SOURCELOWER_TAR_GZ]
+source_urls = ['https://pypi.python.org/packages/81/fd/b2a3be820ff70af7ea88039e0ef36ed4e9c1df7d85e1b91c69339a503cf5/']
+
+prebuildopts = 'python setup.py build #' # notice the hash hack to override setup.py
+preinstallopts = 'python setup.py install --prefix=%(installdir)s #' # another hack
+skipsteps = ['test']
+options = {'modulename': 'phonopy'}
+
+dependencies = [
+    ('OpenBLAS', '0.2.19', '-GCC-6.3.0-2.27-LAPACK-3.7.0', True),
+    ('numpy', '1.14.2', '-test'),
+    ('h5py', '2.7.1'),
+    ('matplotlib', '2.1.1'),
+    ('PyYAML', '3.12'),
+    ('phonopy', '1.12.6.66'),
+]
+
+moduleclass = 'phys'

p/phonopy/phonopy-1.12.6.66-Py-2.7.eb

@@ -0,0 +1,25 @@
+# IT4Innovations 2018
+
+easyblock = 'PythonPackage'
+
+name = 'phonopy'
+version = '1.12.6.66'
+
+homepage = 'https://atztogo.github.io/phonopy'
+description = """Phonopy is an open source package of phonon calculations based on the supercell approach."""
+
+toolchain = {'name': 'Py', 'version': '2.7'}
+
+source_urls = [PYPI_SOURCE]
+sources = [SOURCE_TAR_GZ]
+
+dependencies = [
+    ('matplotlib', '2.1.1'),
+    ('lxml', '4.1.1'),
+    ('PyYAML', '3.12'),
+    ('numpy', '1.13.3'),
+    ('h5py', '2.7.1'),
+    ('scipy', '1.0.0')
+]
+
+moduleclass = 'python'

z/zsh/zsh-5.2-foss-2018b.eb

@@ -0,0 +1,20 @@
+# IT4Innovations 2018
+
+easyblock = 'ConfigureMake'
+
+name = 'zsh'
+version = '5.2'
+
+homepage = 'http://www.zsh.org/'
+description = "Zsh is a shell designed for interactive use, although it is also a powerful scripting language."
+
+toolchain = {'name': 'foss', 'version': '2018a'}
+
+sources = [SOURCELOWER_TAR_XZ]
+source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s']
+
+dependencies = [
+    ('ncurses', '6.0', '', True),
+]
+
+moduleclass = 'tools'