diff --git a/r/R/R-4.0.0-foss-2020a.eb b/r/R/R-4.0.0-foss-2020a.eb index b1844f42..2e490bbe 100644 --- a/r/R/R-4.0.0-foss-2020a.eb +++ b/r/R/R-4.0.0-foss-2020a.eb @@ -2431,32 +2431,45 @@ exts_list = [ #RT#23875 ('BiocGenerics','0.34.0'), ('BiocParallel','1.22.0'), - ('Rsamtools','2.4.0'), - ('GenomicAlignments','1.24.0'), - ('Biobase','2.48.0'), ('S4Vectors','0.26.1'), ('IRanges','2.22.2'), + ('GenomeInfoDbData','1.2.3'), ('GenomeInfoDb','1.24.2'), - ('GenomicRanges','1.40.0'), ('zlibbioc','1.34.0'), ('XVector','0.28.0'), ('Biostrings','2.56.0'), - ('ShortRead', '1.46.0', { - }), - ('DESeq', '1.39.0', { - }), - ('aroma.light', '3.18.0', { - }), - ('EDASeq', '2.22.0', { - }), - ('ggthemes', '4.2.0', { - }), - ('sva', '3.36.0', { - }), - ('matlab', '1.0.2', { - }), - ('TCGAbiolinks', '2.16.1', { - }), + ('GenomicRanges','1.40.0'), + ('Rhtslib','1.20.0'), + ('Rsamtools','2.4.0'), + ('DelayedArray','0.14.1'), + ('Biobase','2.48.0'), + ('SummarizedExperiment','1.18.2'), + ('GenomicAlignments','1.24.0'), + ('ShortRead', '1.46.0'), + ('AnnotationDbi', '1.50.1'), + ('annotate', '1.66.0'), + ('genefilter', '1.70.0'), + ('geneplotter', '1.66.0'), + ('DESeq', '1.39.0'), + ('aroma.light', '3.18.0'), + ('BiocFileCache', '1.12.0'), + ('biomaRt', '2.44.1'), + ('rtracklayer', '1.48.0'), + ('GenomicFeatures', '1.40.1'), + ('BiocManager', '1.30.10'), + ('EDASeq', '2.22.0'), + ('ggthemes', '4.2.0'), + ('limma', '3.44.3'), + ('edgeR', '3.30.3'), + ('sva', '3.36.0'), + ('matlab', '1.0.2'), + ('exactRankTests', '0.8-31'), + ('maxstat', '0.7-25'), + ('KMsurv', '0.1-5'), + ('km.ci', '0.5-2'), + ('survMisc', '0.5.5'), + ('survminer', '0.4.7'), + ('TCGAbiolinks', '2.16.1'), ] moduleclass = 'lang'