From c9acbe8a179e6b70f6701dcb8b434fa824515cf9 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Luk=C3=A1=C5=A1=20Krup=C4=8D=C3=ADk?= Date: Thu, 2 Apr 2020 09:55:08 +0200 Subject: [PATCH] new file: b/BLAST/BLAST-2.10.0-Linux_x86_64.eb modified: o/OpenCV/OpenCV-4.2.0-intel-2020a-Py-3.7.eb new file: s/ShiftX2/ShiftX2-1.13.eb --- b/BLAST/BLAST-2.10.0-Linux_x86_64.eb | 24 ++++++++++++++++++++ o/OpenCV/OpenCV-4.2.0-intel-2020a-Py-3.7.eb | 2 +- s/ShiftX2/ShiftX2-1.13.eb | 25 +++++++++++++++++++++ 3 files changed, 50 insertions(+), 1 deletion(-) create mode 100644 b/BLAST/BLAST-2.10.0-Linux_x86_64.eb create mode 100644 s/ShiftX2/ShiftX2-1.13.eb diff --git a/b/BLAST/BLAST-2.10.0-Linux_x86_64.eb b/b/BLAST/BLAST-2.10.0-Linux_x86_64.eb new file mode 100644 index 00000000..ea8e0f27 --- /dev/null +++ b/b/BLAST/BLAST-2.10.0-Linux_x86_64.eb @@ -0,0 +1,24 @@ +# JH 2020 + +easyblock = "Tarball" + +name = 'BLAST' +version = '2.10.0' +versionsuffix = "-Linux_x86_64" + +homepage = 'http://blast.ncbi.nlm.nih.gov/' +description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm + for local_comparing primary biological sequence information, such as the amino-acid + sequences of different proteins or the nucleotides of DNA sequences.""" + +toolchain = SYSTEM + +source_urls = ['https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.10.0/'] +sources = ['ncbi-blast-2.10.0+-x64-linux.tar.gz'] + +sanity_check_paths = { + 'files': ["bin/blastn"], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/o/OpenCV/OpenCV-4.2.0-intel-2020a-Py-3.7.eb b/o/OpenCV/OpenCV-4.2.0-intel-2020a-Py-3.7.eb index 79d1305b..f94c2701 100644 --- a/o/OpenCV/OpenCV-4.2.0-intel-2020a-Py-3.7.eb +++ b/o/OpenCV/OpenCV-4.2.0-intel-2020a-Py-3.7.eb @@ -1,7 +1,7 @@ # JH 2020 name = 'OpenCV' -version = '4.20' +version = '4.2.0' versionsuffix = '-Py-3.7' homepage = 'https://opencv.org/' diff --git a/s/ShiftX2/ShiftX2-1.13.eb b/s/ShiftX2/ShiftX2-1.13.eb new file mode 100644 index 00000000..366166c9 --- /dev/null +++ b/s/ShiftX2/ShiftX2-1.13.eb @@ -0,0 +1,25 @@ +# JH 2020 + +# make manually after copying + +easyblock = 'Tarball' + +name = 'ShiftX2' +version = '1.13' + +homepage = 'http://www.shiftx2.ca/index.html' +description = """SHIFTX2 predicts both the backbone and side chain 1H, 13C and 15N + chemical shifts for proteins using their structural (PDB) coordinates as input.""" + +toolchain = SYSTEM + +source_urls = ['http://www.shiftx2.ca/download'] +sources = ['shiftx2-v113-linux-20180808.tgz'] + +dependencies = [ + ('Java', '1.8.0_221', '', True), +] + +modextrapaths = {'PATH': ''} + +moduleclass = 'chem'