mirror of
https://code.it4i.cz/sccs/easyconfigs-it4i.git
synced 2025-04-07 15:32:11 +01:00
new file: a/attrs/attrs-19.3.0-Py-3.7.eb
new file: b/BAGEL/BAGEL-1.2.2-intel-2020a.eb new file: b/Boost/Boost-1.72.0-intel-2020a.eb new file: c/Cython/Cython-0.29.14-Py-system.eb new file: l/libxc/libxc-4.3.4-intel-2020a.eb new file: n/numpy/numpy-1.15.4-Py-system.eb new file: o/ORCA/ORCA-4.1.1-OpenMPI-3.1.3.eb new file: o/OpenMPI/OpenMPI-3.1.3-GCCcore-8.3.0.eb new file: p/Py/Py-system.eb new file: p/pandas/pandas-1.0.0-Py-3.7.eb new file: p/pluggy/pluggy-0.13.1-Py-3.7.eb new file: p/pytest/pytest-5.3.5-Py-3.7.eb new file: p/python-dateutil/python-dateutil-2.8.1-Py-3.7.eb new file: p/pytz/pytz-2019.3-Py-3.7.eb new file: r/ReFrame/ReFrame-2.21-Py-3.7.eb new file: s/six/six-1.14.0-Py-3.7.eb
This commit is contained in:
parent
6fbd79af08
commit
c1fff69173
23
a/attrs/attrs-19.3.0-Py-3.7.eb
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a/attrs/attrs-19.3.0-Py-3.7.eb
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# IT4Innovations 2020
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easyblock = 'PythonPackage'
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name = 'attrs'
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version = '19.3.0'
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homepage = 'http://www.attrs.org/'
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description = 'Classes Without Boilerplate'
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toolchain = {'name': 'Py', 'version': '3.7'}
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source_urls = [PYPI_SOURCE]
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sources = [SOURCE_TAR_GZ]
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options = {'modulename': 'attr'}
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sanity_check_paths = {
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'files': [],
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'dirs': ['lib/python3.7/site-packages/%(name)s-%(version)s-py3.7.egg'],
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}
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moduleclass = 'python'
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38
b/BAGEL/BAGEL-1.2.2-intel-2020a.eb
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b/BAGEL/BAGEL-1.2.2-intel-2020a.eb
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# IT4Innovations 2020
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easyblock = 'ConfigureMake'
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name = 'BAGEL'
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version = '1.2.2'
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homepage = "http://www.nubakery.org"
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description = """BAGEL (Brilliantly Advanced General Electronic-structure Library)
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is a parallel electronic-structure program."""
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# Note: A compiler bug(?) in template deduction prevents newer versions of icpc to compile this software.
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toolchain = {'name': 'intel', 'version': '2020a'}
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source_urls = ['https://github.com/nubakery/bagel/archive/']
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sources = ['v%(version)s.tar.gz']
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builddependencies = [
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('Autotools', '20180311'),
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]
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dependencies = [
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('Boost', '1.72.0'),
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('libxc', '4.3.4'),
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]
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# Hack, because bagel-v1.1.1 uses outdated filenames:
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preconfigopts = 'sed -i "s|-gcc-mt||g" configure.ac && '
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preconfigopts += './autogen.sh && '
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preconfigopts += 'CXXFLAGS="$CXXFLAGS -DNDEBUG" '
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configopts = ' --with-boost=$BOOST_ROOT --with-mpi=intel --enable-mkl --with-libxc '
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sanity_check_paths = {
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'files': ['bin/BAGEL', 'lib/libbagel.%s' % SHLIB_EXT],
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'dirs': []
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}
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moduleclass = 'phys'
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26
b/Boost/Boost-1.72.0-intel-2020a.eb
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b/Boost/Boost-1.72.0-intel-2020a.eb
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# IT4Innovations 2020
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name = 'Boost'
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version = '1.72.0'
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homepage = 'http://www.boost.org/'
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description = """Boost provides free peer-reviewed portable C++ source libraries."""
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toolchain = {'name': 'intel', 'version': '2020a'}
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toolchainopts = {'pic': True, 'usempi': True}
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source_urls = [SOURCEFORGE_SOURCE]
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sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))]
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dependencies = [
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('bzip2', '1.0.8', '', True),
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('zlib', '1.2.11', '', True),
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]
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configopts = '--without-libraries=python'
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# also build boost_mpi
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boost_mpi = True
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moduleclass = 'devel'
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22
c/Cython/Cython-0.29.14-Py-system.eb
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c/Cython/Cython-0.29.14-Py-system.eb
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# IT4Innovations 2020
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easyblock = 'PythonPackage'
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name = 'Cython'
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version = '0.29.14'
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homepage = 'https://pypi.python.org/pypi/Cython/'
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description = """The Cython language makes writing C extensions for the Python language as easy as Python itself.
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Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations."""
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toolchain = {'name': 'Py', 'version': 'system'}
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source_urls = [PYPI_SOURCE]
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sources = [SOURCE_TAR_GZ]
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sanity_check_paths = {
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'files': ['bin/cygdb', 'bin/cython', 'bin/cythonize'],
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'dirs': ['bin', 'lib']
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}
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moduleclass = 'lang'
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50
l/libxc/libxc-4.3.4-intel-2020a.eb
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l/libxc/libxc-4.3.4-intel-2020a.eb
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# IT4Innovations 2020
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easyblock = 'CMakeMake'
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name = 'libxc'
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version = '4.3.4'
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homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc'
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description = """Libxc is a library of exchange-correlation functionals for density-functional theory.
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The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals."""
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toolchain = {'name': 'intel', 'version': '2020a'}
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source_urls = ['http://www.tddft.org/programs/libxc/down.php?file=4.3.4/']
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sources = ['libxc-4.3.4.tar.gz']
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patches = [
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#'libxc-%(version)s_rename-F03.patch',
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'libxc-%(version)s.patch'
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]
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builddependencies = [
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('CMake', '3.16.2', '', True),
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('Perl', '5.30.0', '', ('GCCcore', '8.3.0')),
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]
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separate_build_dir = True
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# rename *.F03 source file since Intel Fortran local_compiler doesn't like that extension
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# also requires patch file to rename file in CMakeLists.txt and src/Makefile.in
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preconfigopts = "mv ../libxc-%(version)s/src/libxc_master.F03 ../libxc-%(version)s/src/libxc_master_F03.F90 && "
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local_common_configopts = "-DENABLE_FORTRAN=ON -DENABLE_FORTRAN03=ON -DENABLE_XHOST=OFF"
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# perform iterative build to get both static and shared libraries
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configopts = [
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local_common_configopts + ' -DBUILD_SHARED_LIBS=OFF',
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local_common_configopts + ' -DBUILD_SHARED_LIBS=ON',
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]
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parallel = 1
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runtest = 'test'
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sanity_check_paths = {
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'files': ['bin/xc-info', 'bin/xc-threshold'] +
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['lib/libxc%s.%s' % (x, y) for x in ['', 'f03', 'f90'] for y in ['a', SHLIB_EXT]],
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'dirs': ['include', 'lib/pkgconfig', 'share/cmake/Libxc'],
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}
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moduleclass = 'chem'
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n/numpy/numpy-1.15.4-Py-system.eb
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n/numpy/numpy-1.15.4-Py-system.eb
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# IT4Innovations 2020
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easyblock = 'PythonPackage'
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name = 'numpy'
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version = '1.15.4'
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homepage = 'http://www.numpy.org'
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description = """NumPy is the fundamental package needed for scientific local_computing with Python."""
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toolchain = {'name': 'Py', 'version': 'system'}
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source_urls = ['https://github.com/numpy/numpy/releases/download/v%(version)s']
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sources = [SOURCE_TAR_GZ]
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local_patch = [
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'numpy-1.8.1-mkl.local_patch',
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'numpy-1.11.0-sse42.local_patch'
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]
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dependencies = [
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('mkl', '2019.5.281', '', True),
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('Cython', '0.29.14'),
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]
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sanity_check_paths = {'files': [], 'dirs': [
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'lib/python2.7/site-packages/%(name)s-%(version)s-py2.7-linux-x86_64.egg/numpy'], }
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sanity_check_commands = [
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('python', '-c "import numpy; assert(numpy.__version__ == \'%(version)s\')"')]
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moduleclass = 'python'
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35
o/ORCA/ORCA-4.1.1-OpenMPI-3.1.3.eb
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o/ORCA/ORCA-4.1.1-OpenMPI-3.1.3.eb
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# IT4Innovations 2020
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easyblock = "PackedBinary"
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name = "ORCA"
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version = '4.1.1'
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versionsuffix = '-OpenMPI-3.1.3'
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homepage = 'http://cec.mpg.de/forum/'
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description = """ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry
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with specific emphasis on spectroscopic properties of open-shell molecules.
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It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single-
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and multireference correlated ab initio methods.
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It can also treat environmental and relativistic effects."""
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toolchain = SYSTEM
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# Download from https://orcaforum.kofo.mpg.de
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sources = ['orca_4_1_1_linux_x86-64_openmpi313.tar.xz']
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dependencies = [('OpenMPI', '3.1.3', '-GCCcore-8.3.0')]
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sanity_check_paths = {
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'files': ['orca_%s%s' % (x, y) for x in ['anoint', 'casscf', 'cis', 'cpscf',
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'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc',
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'rocis', 'scf', 'scfgrad', 'soc'] for y in ['', '_mpi']] +
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['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib',
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'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc',
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'md', 'mergefrag', 'ndoint', 'numfreq', 'plot',
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'pltvib', 'pop', 'rel', 'vib', 'vpot']] +
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['orca'],
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'dirs': [],
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}
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moduleclass = 'chem'
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46
o/OpenMPI/OpenMPI-3.1.3-GCCcore-8.3.0.eb
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46
o/OpenMPI/OpenMPI-3.1.3-GCCcore-8.3.0.eb
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# IT4Innovations 2019
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easyblock = 'ConfigureMake'
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name = 'OpenMPI'
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version = '3.1.3'
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homepage = 'http://www.open-mpi.org/'
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description = """The Open MPI Project is an open source MPI-2 implementation."""
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toolchain = {'name': 'GCCcore', 'version': '8.3.0'}
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source_urls = [
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'http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads']
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sources = [SOURCELOWER_TAR_GZ]
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dependencies = [
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('hwloc', '1.11.12'),
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('zlib', '1.2.11'),
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('binutils', '2.32'),
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('UCX', '1.6.1'),
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]
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configopts = '--with-tm=/opt/pbs ' # Enable PBS
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configopts += '--with-ucx=$EBROOTUCX '
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osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')]
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libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"]
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sanity_check_paths = {
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'files': [
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"bin/%s" %
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binfile for binfile in [
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"ompi_info", "opal_wrapper", "orterun"]] + [
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"lib/lib%s.%s" %
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(libfile, SHLIB_EXT) for libfile in libs] + [
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||||
"include/%s.h" %
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||||
x for x in [
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||||
"mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], 'dirs': [], }
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|
||||
modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx5_0',
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'OMPI_MCA_btl_tcp_if_include': '10.33.4.0/24',
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||||
'OMPI_MCA_orte_base_help_aggregate': '0',
|
||||
}
|
||||
|
||||
moduleclass = 'mpi'
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17
p/Py/Py-system.eb
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17
p/Py/Py-system.eb
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# IT4Innovations 2019
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||||
|
||||
easyblock = "Toolchain"
|
||||
|
||||
name = 'Py'
|
||||
version = 'system'
|
||||
|
||||
homepage = 'https://www.python.org'
|
||||
description = """Python 2.7 toolchain"""
|
||||
|
||||
toolchain = SYSTEM
|
||||
|
||||
dependencies = [
|
||||
('GCC', '8.3.0-2.32'),
|
||||
]
|
||||
|
||||
moduleclass = 'toolchain'
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24
p/pandas/pandas-1.0.0-Py-3.7.eb
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24
p/pandas/pandas-1.0.0-Py-3.7.eb
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# IT4Innovations 2018
|
||||
|
||||
easyblock = "PythonPackage"
|
||||
name = 'pandas'
|
||||
version = '1.0.0'
|
||||
|
||||
homepage = 'https://pypi.python.org/pypi/pandas'
|
||||
description = 'Powerful data structures for data analysis, time series,and statistics.'
|
||||
|
||||
toolchain = {'name': 'Py', 'version': '3.7'}
|
||||
|
||||
source_urls = [PYPI_SOURCE]
|
||||
sources = [SOURCE_TAR_GZ]
|
||||
|
||||
dependencies = [
|
||||
('numpy', '1.18.1'),
|
||||
('pytz', '2019.3'),
|
||||
('python-dateutil', '2.8.1'),
|
||||
]
|
||||
|
||||
sanity_check_paths = {'files': [], 'dirs': [
|
||||
'lib/python3.7/site-packages/%(name)s-%(version)s-py3.7-linux-x86_64.egg'], }
|
||||
|
||||
moduleclass = 'python'
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21
p/pluggy/pluggy-0.13.1-Py-3.7.eb
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21
p/pluggy/pluggy-0.13.1-Py-3.7.eb
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||||
# IT4Innovations 2020
|
||||
|
||||
easyblock = 'PythonPackage'
|
||||
|
||||
name = 'pluggy'
|
||||
version = '0.13.1'
|
||||
|
||||
homepage = 'https://github.com/pytest-dev/pluggy'
|
||||
description = 'Plugin and hook calling mechanisms for python.'
|
||||
|
||||
toolchain = {'name': 'Py', 'version': '3.7'}
|
||||
|
||||
source_urls = [PYPI_SOURCE]
|
||||
sources = [SOURCE_TAR_GZ]
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': [],
|
||||
'dirs': ['lib/python3.7/site-packages/%(name)s-%(version)s-py3.7.egg'],
|
||||
}
|
||||
|
||||
moduleclass = 'python'
|
30
p/pytest/pytest-5.3.5-Py-3.7.eb
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30
p/pytest/pytest-5.3.5-Py-3.7.eb
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|
||||
# IT4Innovations 2020
|
||||
|
||||
easyblock = 'PythonPackage'
|
||||
|
||||
name = 'pytest'
|
||||
version = '5.3.5'
|
||||
|
||||
homepage = 'http://pytest.org'
|
||||
description = 'Simple powerful testing with Python'
|
||||
|
||||
toolchain = {'name': 'Py', 'version': '3.7'}
|
||||
|
||||
source_urls = [PYPI_SOURCE]
|
||||
sources = [SOURCE_TAR_GZ]
|
||||
|
||||
#download_dep_fail = True
|
||||
use_pip = False
|
||||
|
||||
dependencies = [
|
||||
('six', '1.14.0'),
|
||||
('pluggy', '0.13.1'),
|
||||
('attrs', '19.3.0'),
|
||||
]
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': [],
|
||||
'dirs': ['lib/python3.7/site-packages/%(name)s-%(version)s-py3.7.egg'],
|
||||
}
|
||||
|
||||
moduleclass = 'python'
|
27
p/python-dateutil/python-dateutil-2.8.1-Py-3.7.eb
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27
p/python-dateutil/python-dateutil-2.8.1-Py-3.7.eb
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|
||||
# IT4Innovations 2020
|
||||
|
||||
easyblock = "PythonPackage"
|
||||
name = 'python-dateutil'
|
||||
version = '2.8.1'
|
||||
|
||||
homepage = 'https://github.com/dateutil/dateutil'
|
||||
description = 'Useful extensions to the standard Python datetime features.'
|
||||
|
||||
toolchain = {'name': 'Py', 'version': '3.7'}
|
||||
|
||||
source_urls = [
|
||||
'https://github.com/dateutil/dateutil/releases/download/%(version)s']
|
||||
sources = [SOURCE_TAR_GZ]
|
||||
|
||||
dependencies = [
|
||||
('six', '1.14.0'),
|
||||
]
|
||||
|
||||
options = {'modulename': 'dateutil'}
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['lib/python3.7/site-packages/python_dateutil-%(version)s-py3.7.egg'],
|
||||
'dirs': [],
|
||||
}
|
||||
|
||||
moduleclass = 'python'
|
22
p/pytz/pytz-2019.3-Py-3.7.eb
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22
p/pytz/pytz-2019.3-Py-3.7.eb
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|
||||
# IT4Innovations 2020
|
||||
|
||||
easyblock = "PythonPackage"
|
||||
name = 'pytz'
|
||||
version = '2019.3'
|
||||
|
||||
homepage = 'http://pytz.sourceforge.net/'
|
||||
description = """pytz brings the Olson tz database into Python. This library allows
|
||||
accurate and cross platform timezone calculations using Python 2.4 or higher."""
|
||||
|
||||
toolchain = {'name': 'Py', 'version': '3.7'}
|
||||
|
||||
source_urls = [
|
||||
'https://files.pythonhosted.org/packages/82/c3/534ddba230bd4fbbd3b7a3d35f3341d014cca213f369a9940925e7e5f691/']
|
||||
sources = [SOURCE_TAR_GZ]
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['lib/python3.7/site-packages/%(name)s-%(version)s-py3.7.egg'],
|
||||
'dirs': [],
|
||||
}
|
||||
|
||||
moduleclass = 'python'
|
30
r/ReFrame/ReFrame-2.21-Py-3.7.eb
Normal file
30
r/ReFrame/ReFrame-2.21-Py-3.7.eb
Normal file
@ -0,0 +1,30 @@
|
||||
# IT4Innovations 2020
|
||||
|
||||
easyblock = 'PythonPackage'
|
||||
|
||||
name = 'ReFrame'
|
||||
version = '2.21'
|
||||
|
||||
homepage = 'https://github.com/eth-cscs/reframe'
|
||||
description = '''ReFrame is a framework for writing regression tests for HPC systems.'''
|
||||
|
||||
toolchain = {'name': 'Py', 'version': '3.7'}
|
||||
|
||||
source_urls = ['https://pypi.python.org/packages/source/R/ReFrame-HPC']
|
||||
sources = ['ReFrame-HPC-%(version)s.tar.gz']
|
||||
|
||||
download_dep_fail = True
|
||||
use_pip = False
|
||||
|
||||
dependencies = [
|
||||
('pytest', '5.3.5'),
|
||||
]
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/reframe'],
|
||||
'dirs': []
|
||||
}
|
||||
|
||||
sanity_check_commands = ['reframe -V']
|
||||
|
||||
moduleclass = 'devel'
|
20
s/six/six-1.14.0-Py-3.7.eb
Normal file
20
s/six/six-1.14.0-Py-3.7.eb
Normal file
@ -0,0 +1,20 @@
|
||||
# IT4Innovations 2020
|
||||
|
||||
easyblock = "PythonPackage"
|
||||
name = 'six'
|
||||
version = '1.14.0'
|
||||
|
||||
homepage = 'https://github.com/benjaminp/six'
|
||||
description = 'Python 2 and 3 local_compatibility library.'
|
||||
|
||||
toolchain = {'name': 'Py', 'version': '3.7'}
|
||||
|
||||
source_urls = ['https://github.com/benjaminp/six/archive/']
|
||||
sources = ['%(version)s.tar.gz']
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': [],
|
||||
'dirs': ['lib/python3.7/site-packages/%(name)s-%(version)s-py3.7.egg'],
|
||||
}
|
||||
|
||||
moduleclass = 'python'
|
Loading…
x
Reference in New Issue
Block a user