diff --git a/d/dos2unix/dos2unix-7.4.2.eb b/d/dos2unix/dos2unix-7.4.2.eb new file mode 100644 index 00000000..b9acc7d9 --- /dev/null +++ b/d/dos2unix/dos2unix-7.4.2.eb @@ -0,0 +1,29 @@ +# IT4Innovations 2021 +# LK + +easyblock = 'ConfigureMake' + +name = 'dos2unix' +version = '7.4.2' + +homepage = 'https://sourceforge.net/projects/dos2unix' +description = "dos2unix includes utilities to convert text files with DOS or MAC line breaks to Unix line breaks and vice versa. It also includes conversion of UTF-16 to UTF-8." + +toolchain = SYSTEM +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['https://sourceforge.net/projects/dos2unix/files/dos2unix/-%(version)s/'] +sources = ['dos2unix-%(version)s.tar.gz'] + +skipsteps = ['configure'] + +dependencies = [ ('gettext', '0.21', '', True) ] + +installopts = "prefix=%(installdir)s" + +sanity_check_paths = { + 'files': ['bin/dos2unix', 'bin/unix2dos'], + 'dirs': ['bin', 'share'], +} + +moduleclass = 'tools' diff --git a/j/Julia/Julia-1.5.3-linux-x86_64.eb b/j/Julia/Julia-1.5.3-linux-x86_64.eb new file mode 100644 index 00000000..d3ce0aeb --- /dev/null +++ b/j/Julia/Julia-1.5.3-linux-x86_64.eb @@ -0,0 +1,23 @@ +# IT4Innovations 2021 +# LK + +easyblock = 'Tarball' + +name = 'Julia' +version = '1.5.3' +versionsuffix = '-linux-x86_64' + +homepage = 'https://julialang.org' +description = "Julia is a high-level, high-performance dynamic programming language for numerical computing" + +toolchain = SYSTEM + +source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/'] +sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz'] + +sanity_check_paths = { + 'files': ['bin/julia', 'include/julia/julia.h', 'lib/libjulia.so'], + 'dirs': ['bin', 'etc', 'include', 'lib', 'share'] +} + +moduleclass = 'lang' diff --git a/o/OpenMPI/OpenMPI-4.0.5-gcccuda-2020b.eb b/o/OpenMPI/OpenMPI-4.0.5-gcccuda-2020b.eb new file mode 100644 index 00000000..04b27d58 --- /dev/null +++ b/o/OpenMPI/OpenMPI-4.0.5-gcccuda-2020b.eb @@ -0,0 +1,43 @@ +# IT4Innovations 2021 +# LK + +name = 'OpenMPI' +version = '4.0.5' + +homepage = 'https://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-3 implementation.""" + +toolchain = {'name': 'gcccuda', 'version': '2020b'} + +source_urls = ['https://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['572e777441fd47d7f06f1b8a166e7f44b8ea01b8b2e79d1e299d509725d1bd05'] + +builddependencies = [ + ('pkg-config', '0.29.2'), +] + +dependencies = [ + ('zlib', '1.2.11'), + ('hwloc', '2.2.0'), + ('libevent', '2.1.12'), + ('UCX', '1.9.0', '-CUDA-11.1.1'), + ('libfabric', '1.11.0'), + ('PMIx', '3.1.5'), +] + +configopts = '--enable-shared --enable-mpi-thread-multiple --with-verbs ' +configopts += '--enable-mpirun-prefix-by-default ' +#configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--with-tm=/opt/pbs ' # Enable PBS +configopts += '--enable-mpi-cxx ' # Enable building the C++ MPI bindings +#configopts += '--with-ucx=$EBROOTUCX ' +#configopts += '--with-cuda=$EBROOTCUDA ' + +# disable MPI1 compatibility for now, see what breaks... +# configopts = '--enable-mpi1-compatibility ' + +# to enable SLURM integration (site-specific) +# configopts += '--with-slurm --with-pmi=/usr/include/slurm --with-pmi-libdir=/usr' + +moduleclass = 'mpi' diff --git a/v/Valgrind/Valgrind-3.16.1-gompi-2020b.eb b/v/Valgrind/Valgrind-3.16.1-gompi-2020b.eb new file mode 100644 index 00000000..af984b95 --- /dev/null +++ b/v/Valgrind/Valgrind-3.16.1-gompi-2020b.eb @@ -0,0 +1,39 @@ +# IT4Innovations 2021 +# LK + +easyblock = 'ConfigureMake' + +name = 'Valgrind' +version = '3.16.1' + +homepage = 'https://valgrind.org' +description = "Valgrind: Debugging and profiling tools" + +toolchain = {'name': 'gompi', 'version': '2020b'} +toolchainopts = {'optarch': True} + +source_urls = [ + 'ftp://sourceware.org/pub/valgrind/', + 'https://www.mirrorservice.org/sites/sourceware.org/pub/valgrind/', +] +sources = [SOURCELOWER_TAR_BZ2] +patches = ['Valgrind-3.15.0-no-MPI-1.patch'] +checksums = [ + 'c91f3a2f7b02db0f3bc99479861656154d241d2fdb265614ba918cc6720a33ca', # valgrind-3.16.1.tar.bz2 + 'e99464ad9f2d2e74c5c50d2fa1bcf8637295b11cd841102035f8601b01afd85f', # Valgrind-3.15.0-no-MPI-1.patch +] + +configopts = ' --with-mpicc="$MPICC"' + +local_binaries = [ + 'callgrind_annotate', 'callgrind_control', 'cg_annotate', 'cg_diff', + 'cg_merge', 'ms_print', 'valgrind', 'valgrind-listener', 'vgdb' +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in local_binaries] + + ['lib/valgrind/libmpiwrap-amd64-linux.%s' % SHLIB_EXT], + 'dirs': [] +} + +moduleclass = 'debugger' diff --git a/v/Valgrind/Valgrind-3.16.1-intel-2020b.eb b/v/Valgrind/Valgrind-3.16.1-intel-2020b.eb new file mode 100644 index 00000000..5f19c115 --- /dev/null +++ b/v/Valgrind/Valgrind-3.16.1-intel-2020b.eb @@ -0,0 +1,30 @@ +# IT4Innovations 2021 +# LK + +easyblock = 'ConfigureMake' + +name = 'Valgrind' +version = "3.16.1" + +homepage = 'http://valgrind.org/downloads/' +description = "Valgrind: Debugging and profiling tools" + +toolchain = {'name': 'intel', 'version': '2020b'} +toolchainopts = {'optarch': False} + +source_urls = ['https://sourceware.org/pub/valgrind/'] +sources = [SOURCELOWER_TAR_BZ2] + +configopts = ' --with-mpicc="$MPICC"' + +binaries = [ + 'callgrind_annotate', 'callgrind_control', 'cg_annotate', 'cg_diff', + 'cg_merge', 'ms_print', 'valgrind', 'valgrind-listener', 'vgdb' +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in binaries], + 'dirs': [] +} + +moduleclass = 'debugger'