mirror of
https://code.it4i.cz/sccs/easyconfigs-it4i.git
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new file: a/AlphaPulldown/AlphaPulldown-0.30.7-foss-2020b.eb
new file: a/AlphaPulldown/AlphaPulldown-0.30.7-fosscuda-2020b.eb new file: o/OpenMM/OpenMM-7.5.0-fosscuda-2020b.eb new file: t/TensorFlow/TensorFlow-2.4.1-foss-2020b.eb new file: t/TensorFlow/TensorFlow-2.4.1-fosscuda-2020b.eb
This commit is contained in:
Lukas Krupcik
parent
4a7726cdbc
commit
b65ecfe43d
86
a/AlphaPulldown/AlphaPulldown-0.30.7-foss-2020b.eb
Normal file
86
a/AlphaPulldown/AlphaPulldown-0.30.7-foss-2020b.eb
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@ -0,0 +1,86 @@
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# IT4Innovations
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# LK 2023
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easyblock = 'PythonBundle'
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name = 'AlphaPulldown'
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version = '0.30.7'
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homepage = 'https://github.com/KosinskiLab/AlphaPulldown'
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description = """AlphaPulldown is a Python package that streamlines protein-protein
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interaction screens and high-throughput modelling of higher-order oligomers using AlphaFold-Multimer"""
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toolchain = {'name': 'foss', 'version': '2020b'}
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dependencies = [
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('Python', '3.8.6'),
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('OpenMM', '7.5.0'),
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('Kalign', '3.3.1'),
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('PyYAML', '5.3.1'),
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('cctbx-base', '2020.8'),
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('jax', '0.2.19'), # also provides absl-py
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('Biopython', '1.78'),
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('h5py', '3.1.0'),
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('IPython', '7.18.1'),
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('JupyterLab', '2.2.8'),
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('matplotlib', '3.3.3'),
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('TensorFlow', '2.4.1'),
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('tqdm', '4.56.2'),
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# ('dm-tree', '0.1.5'),
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]
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use_pip = True
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exts_list = [
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('py3Dmol', '2.0.1.post1', {
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'modulename': 'py3Dmol',
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'checksums': ['add70ecf8f647970925eb8c1043c5c1343813fa49e613b77f0628e522c4148ac'],
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}),
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('PDBFixer', '1.7', {
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'source_urls': ['https://github.com/openmm/pdbfixer/archive/refs/tags/'],
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'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}],
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'checksums': ['a0bef3c52a7bbe69a6aea5333f51f3e7d158339be5829aed19b0344bd66d4eea'],
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}),
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('dm-haiku', '0.0.4', {
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'modulename': 'haiku',
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'patches': ['%(name)s-%(version)s_fix-deps.patch'],
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'source_urls': ['https://github.com/deepmind/dm-haiku/archive/refs/tags/'],
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'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}],
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'checksums': [
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{'dm-haiku-0.0.4.tar.gz': 'e9896d161938b53f869fde207f3f6fca496d09b2a47d21dd9b6b65e897ad6aab'},
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{'dm-haiku-0.0.4_fix-deps.patch': 'c509e0aa049401f340234b0a5eba59c9e8af8eff94b9e92f0693aeadfa4c5aa8'},
|
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],
|
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}),
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('toolz', '0.11.1', {
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'checksums': ['c7a47921f07822fe534fb1c01c9931ab335a4390c782bd28c6bcc7c2f71f3fbf'],
|
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}),
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('importlib-resources', '5.12.0', {
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'modulename': 'importlib_resources',
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'source_tmpl': 'importlib_resources-%(version)s.tar.gz',
|
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'checksums': ['4be82589bf5c1d7999aedf2a45159d10cb3ca4f19b2271f8792bc8e6da7b22f6'],
|
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}),
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||||
('contextlib2', '21.6.0', {
|
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'checksums': ['ab1e2bfe1d01d968e1b7e8d9023bc51ef3509bba217bb730cee3827e1ee82869'],
|
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}),
|
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('ml-collections', '0.1.1', {
|
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'sources': ['ml_collections-%(version)s.tar.gz'],
|
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'checksums': ['3fefcc72ec433aa1e5d32307a3e474bbb67f405be814ea52a2166bfc9dbe68cc'],
|
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}),
|
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(name, version, {
|
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'patches': ['%(name)s-0.30.4_fix-deps.patch'],
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'sources': ['%(namelower)s-%(version)s.tar.gz'],
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'checksums': [
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{'alphapulldown-0.30.7.tar.gz': '94388d37ed2eb8607bca0f07ca095eba'},
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{'AlphaPulldown-0.30.4_fix-deps.patch': 'fc5bf395cb36d02efa6d538df49749e722b2d2c257197e3dac83a81c9405c0c9'},
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],
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}),
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]
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#sanity_pip_check = True
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sanity_check_paths = {
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'files': ['bin/run_multimer_jobs.py', 'bin/rename_colab_search_a3m.py'],
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'dirs': ['lib/python%(pyshortver)s/site-packages/alphapulldown'],
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}
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moduleclass = 'data'
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84
a/AlphaPulldown/AlphaPulldown-0.30.7-fosscuda-2020b.eb
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84
a/AlphaPulldown/AlphaPulldown-0.30.7-fosscuda-2020b.eb
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@ -0,0 +1,84 @@
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# created by Denis Kristak (Inuits)
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easyblock = "PythonBundle"
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name = "AlphaPulldown"
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version = "0.30.7"
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homepage = "https://github.com/KosinskiLab/AlphaPulldown"
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description = """AlphaPulldown is a Python package that streamlines protein-protein
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interaction screens and high-throughput modelling of higher-order oligomers using AlphaFold-Multimer"""
|
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|
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toolchain = {'name': 'fosscuda', 'version': '2020b'}
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|
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dependencies = [
|
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('Python', '3.8.6'),
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("OpenMM", "7.5.0"),
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("Kalign", "3.3.1"),
|
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('PyYAML', '5.3.1'),
|
||||
("cctbx-base", "2020.8"),
|
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('jax', '0.2.19'), # also provides absl-py
|
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('Biopython', '1.78'),
|
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('h5py', '3.1.0'),
|
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('IPython', '7.18.1'),
|
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('JupyterLab', '2.2.8'),
|
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('matplotlib', '3.3.3'),
|
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('TensorFlow', '2.4.1'),
|
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('tqdm', '4.56.2'),
|
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# ('dm-tree', '0.1.5'),
|
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]
|
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|
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use_pip = True
|
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|
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exts_list = [
|
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('py3Dmol', '2.0.1.post1', {
|
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'modulename': 'py3Dmol',
|
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'checksums': ['add70ecf8f647970925eb8c1043c5c1343813fa49e613b77f0628e522c4148ac'],
|
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}),
|
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# ('PDBFixer', '1.7', {
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# 'source_urls': ['https://github.com/openmm/pdbfixer/archive/refs/tags/'],
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# 'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}],
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# 'checksums': ['a0bef3c52a7bbe69a6aea5333f51f3e7d158339be5829aed19b0344bd66d4eea'],
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# }),
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('dm-haiku', '0.0.4', {
|
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'modulename': 'haiku',
|
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'patches': ['%(name)s-%(version)s_fix-deps.patch'],
|
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'source_urls': ['https://github.com/deepmind/dm-haiku/archive/refs/tags/'],
|
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'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}],
|
||||
'checksums': [
|
||||
{'dm-haiku-0.0.4.tar.gz': 'e9896d161938b53f869fde207f3f6fca496d09b2a47d21dd9b6b65e897ad6aab'},
|
||||
{'dm-haiku-0.0.4_fix-deps.patch': 'c509e0aa049401f340234b0a5eba59c9e8af8eff94b9e92f0693aeadfa4c5aa8'},
|
||||
],
|
||||
}),
|
||||
('toolz', '0.11.1', {
|
||||
'checksums': ['c7a47921f07822fe534fb1c01c9931ab335a4390c782bd28c6bcc7c2f71f3fbf'],
|
||||
}),
|
||||
('importlib-resources', '5.12.0', {
|
||||
'modulename': 'importlib_resources',
|
||||
'source_tmpl': 'importlib_resources-%(version)s.tar.gz',
|
||||
'checksums': ['4be82589bf5c1d7999aedf2a45159d10cb3ca4f19b2271f8792bc8e6da7b22f6'],
|
||||
}),
|
||||
('contextlib2', '21.6.0', {
|
||||
'checksums': ['ab1e2bfe1d01d968e1b7e8d9023bc51ef3509bba217bb730cee3827e1ee82869'],
|
||||
}),
|
||||
('ml-collections', '0.1.1', {
|
||||
'sources': ['ml_collections-%(version)s.tar.gz'],
|
||||
'checksums': ['3fefcc72ec433aa1e5d32307a3e474bbb67f405be814ea52a2166bfc9dbe68cc'],
|
||||
}),
|
||||
(name, version, {
|
||||
'patches': ['%(name)s-0.30.4_fix-deps.patch'],
|
||||
'sources': ['%(namelower)s-%(version)s.tar.gz'],
|
||||
'checksums': [
|
||||
{'alphapulldown-0.30.7.tar.gz': '94388d37ed2eb8607bca0f07ca095eba'},
|
||||
{'AlphaPulldown-0.30.4_fix-deps.patch': 'fc5bf395cb36d02efa6d538df49749e722b2d2c257197e3dac83a81c9405c0c9'},
|
||||
],
|
||||
}),
|
||||
]
|
||||
|
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#sanity_pip_check = True
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|
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#sanity_check_paths = {
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# "files": ['bin/run_multimer_jobs.py', 'bin/rename_colab_search_a3m.py'],
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# "dirs": ["lib/python%(pyshortver)s/site-packages/alphapulldown"],
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#}
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moduleclass = "data"
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||||
62
o/OpenMM/OpenMM-7.5.0-fosscuda-2020b.eb
Normal file
62
o/OpenMM/OpenMM-7.5.0-fosscuda-2020b.eb
Normal file
@ -0,0 +1,62 @@
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# IT4Innovations
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# LK 2023
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easyblock = 'CMakeMake'
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name = 'OpenMM'
|
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version = '7.5.0'
|
||||
|
||||
homepage = 'https://openmm.org'
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description = "OpenMM is a toolkit for molecular simulation."
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|
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toolchain = {'name': 'fosscuda', 'version': '2020b'}
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toolchainopts = {'opt': True}
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|
||||
source_urls = ['https://github.com/openmm/openmm/archive/']
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sources = ['%(version)s.tar.gz']
|
||||
patches = ['%(name)s-%(version)s_fix_path_to_nvcc.patch']
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||||
checksums = [
|
||||
'516748b4f1ae936c4d70cc6401174fc9384244c65cd3aef27bc2c53eac6d6de5', # 7.5.0.tar.gz
|
||||
'050d5b81e70b34d06ef87eafc6d540b2cf716a61f53b1d2a3786504da3ec2e3c', # OpenMM-7.5.0_fix_path_to_nvcc.patch
|
||||
]
|
||||
|
||||
builddependencies = [
|
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('CMake', '3.18.4'),
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('Doxygen', '1.8.20'),
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||||
]
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||||
|
||||
separate_build_dir = True
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||||
|
||||
dependencies = [
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('Python', '3.8.6'),
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('SciPy-bundle', '2020.11'),
|
||||
('SWIG', '4.0.2'),
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||||
]
|
||||
|
||||
# Flags for CUDA-enabled build
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||||
configopts = "-DOPENMM_BUILD_CUDA_LIB=ON"
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||||
|
||||
pretestopts = "export OPENMM_CUDA_COMPILER=nvcc && CTEST_OUTPUT_ON_FAILURE=1"
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||||
local_ignore_pattern = "(Integrator)|(Thermostat)|(Barostat)|(Rpmd)|(Amoeba)"
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||||
runtest = """test -e ARGS="-E \'%s\'" """ % local_ignore_pattern
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||||
|
||||
preinstallopts = ' export OPENMM_INCLUDE_PATH=%(installdir)s/include && '
|
||||
preinstallopts += ' export OPENMM_LIB_PATH=%(installdir)s/lib && '
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||||
|
||||
# required to install the python API
|
||||
#installopts = ' && cd python && python setup.py build && python setup.py install --prefix=%(installdir)s'
|
||||
|
||||
#sanity_check_paths = {
|
||||
# 'files': ['lib/libOpenMM.%s' % SHLIB_EXT, 'lib/python%(pyshortver)s/site-packages/simtk/openmm/openmm.py'],
|
||||
# 'dirs': []
|
||||
#}
|
||||
|
||||
#sanity_check_commands = ["python -m simtk.testInstallation"]
|
||||
|
||||
modextrapaths = {
|
||||
'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages',
|
||||
'OPENMM_INCLUDE_PATH': 'include',
|
||||
'OPENMM_LIB_PATH': 'lib',
|
||||
}
|
||||
|
||||
moduleclass = 'bio'
|
||||
236
t/TensorFlow/TensorFlow-2.4.1-foss-2020b.eb
Normal file
236
t/TensorFlow/TensorFlow-2.4.1-foss-2020b.eb
Normal file
@ -0,0 +1,236 @@
|
||||
# IT4Innovations
|
||||
# LK 2023
|
||||
|
||||
easyblock = 'PythonBundle'
|
||||
|
||||
name = 'TensorFlow'
|
||||
version = '2.4.1'
|
||||
|
||||
homepage = 'https://www.tensorflow.org/'
|
||||
description = "An open-source software library for Machine Intelligence"
|
||||
|
||||
toolchain = {'name': 'foss', 'version': '2020b'}
|
||||
toolchainopts = {'pic': True}
|
||||
|
||||
builddependencies = [
|
||||
('Bazel', '3.7.2'),
|
||||
('protobuf', '3.14.0'),
|
||||
# git 2.x required, see also https://github.com/tensorflow/tensorflow/issues/29053
|
||||
('git', '2.28.0', '-nodocs'),
|
||||
('pybind11', '2.6.0'),
|
||||
('pkgconfig', '1.5.1', '-python'), # For h5py
|
||||
('UnZip', '6.0'),
|
||||
]
|
||||
dependencies = [
|
||||
('Python', '3.8.6'),
|
||||
# Next 2 are for h5py
|
||||
('SciPy-bundle', '2020.11'),
|
||||
('HDF5', '1.10.7'),
|
||||
('cURL', '7.72.0'),
|
||||
('double-conversion', '3.1.5'),
|
||||
('flatbuffers', '1.12.0'),
|
||||
('giflib', '5.2.1'),
|
||||
('hwloc', '2.2.0'),
|
||||
('ICU', '67.1'),
|
||||
('JsonCpp', '1.9.4'),
|
||||
('libjpeg-turbo', '2.0.5'),
|
||||
('LMDB', '0.9.24'),
|
||||
('NASM', '2.15.05'),
|
||||
('nsync', '1.24.0'),
|
||||
('SQLite', '3.33.0'),
|
||||
('PCRE', '8.44'),
|
||||
('protobuf-python', '3.14.0'),
|
||||
('flatbuffers-python', '1.12'),
|
||||
('typing-extensions', '3.7.4.3'),
|
||||
('libpng', '1.6.37'),
|
||||
('snappy', '1.1.8'),
|
||||
('zlib', '1.2.11'),
|
||||
]
|
||||
|
||||
sanity_pip_check = True
|
||||
use_pip = True
|
||||
|
||||
|
||||
# Dependencies created and updated using findPythonDeps.sh:
|
||||
# https://gist.github.com/Flamefire/49426e502cd8983757bd01a08a10ae0d
|
||||
exts_list = [
|
||||
# TF 2.4 needs h5py 2.10, later versions allow 3.x
|
||||
('h5py', '2.10.0', {
|
||||
'patches': ['h5py-2.10.0_avoid-mpi-init.patch'],
|
||||
'checksums': [
|
||||
'84412798925dc870ffd7107f045d7659e60f5d46d1c70c700375248bf6bf512d', # h5py-2.10.0.tar.gz
|
||||
'6bacb71f5d9fbd7bd9a01018d7fe21b067a2317f33c4a7c21fde9cd404c1603f', # h5py-2.10.0_avoid-mpi-init.patch
|
||||
],
|
||||
'preinstallopts': 'HDF5_MPI=ON HDF5_DIR="$EBROOTHDF5" ',
|
||||
}),
|
||||
('Markdown', '3.3.3', {
|
||||
'checksums': ['5d9f2b5ca24bc4c7a390d22323ca4bad200368612b5aaa7796babf971d2b2f18'],
|
||||
}),
|
||||
('pyasn1-modules', '0.2.8', {
|
||||
'checksums': ['905f84c712230b2c592c19470d3ca8d552de726050d1d1716282a1f6146be65e'],
|
||||
}),
|
||||
('rsa', '4.7', {
|
||||
'checksums': ['69805d6b69f56eb05b62daea3a7dbd7aa44324ad1306445e05da8060232d00f4'],
|
||||
}),
|
||||
('cachetools', '4.2.0', {
|
||||
'checksums': ['3796e1de094f0eaca982441c92ce96c68c89cced4cd97721ab297ea4b16db90e'],
|
||||
}),
|
||||
('google-auth', '1.24.0', {
|
||||
'modulename': 'google.auth',
|
||||
'checksums': ['0b0e026b412a0ad096e753907559e4bdb180d9ba9f68dd9036164db4fdc4ad2e'],
|
||||
}),
|
||||
('oauthlib', '3.1.0', {
|
||||
'checksums': ['bee41cc35fcca6e988463cacc3bcb8a96224f470ca547e697b604cc697b2f889'],
|
||||
}),
|
||||
('requests-oauthlib', '1.3.0', {
|
||||
'checksums': ['b4261601a71fd721a8bd6d7aa1cc1d6a8a93b4a9f5e96626f8e4d91e8beeaa6a'],
|
||||
}),
|
||||
('google-auth-oauthlib', '0.4.2', {
|
||||
'checksums': ['65b65bc39ad8cab15039b35e5898455d3d66296d0584d96fe0e79d67d04c51d9'],
|
||||
}),
|
||||
('Werkzeug', '1.0.1', {
|
||||
'checksums': ['6c80b1e5ad3665290ea39320b91e1be1e0d5f60652b964a3070216de83d2e47c'],
|
||||
}),
|
||||
('absl-py', '0.10.0', {
|
||||
'modulename': 'absl',
|
||||
'checksums': ['b20f504a7871a580be5268a18fbad48af4203df5d33dbc9272426cb806245a45'],
|
||||
}),
|
||||
('astunparse', '1.6.3', {
|
||||
'checksums': ['5ad93a8456f0d084c3456d059fd9a92cce667963232cbf763eac3bc5b7940872'],
|
||||
}),
|
||||
('grpcio', '1.32.0', {
|
||||
'modulename': 'grpc',
|
||||
'checksums': ['01d3046fe980be25796d368f8fc5ff34b7cf5e1444f3789a017a7fe794465639'],
|
||||
'preinstallopts': "export GRPC_PYTHON_BUILD_EXT_COMPILER_JOBS=%(parallel)s && ",
|
||||
}),
|
||||
('gviz-api', '1.9.0', {
|
||||
'source_tmpl': 'gviz_api-%(version)s.tar.gz',
|
||||
'checksums': ['43d13ccc21834d0501b33a291ef3265e933dbb4bbdca3d34b1ed0a048c0ef640'],
|
||||
}),
|
||||
('tensorboard', version, {
|
||||
'source_tmpl': 'tensorboard-%(version)s-py3-none-any.whl',
|
||||
'unpack_sources': False,
|
||||
'checksums': ['7b8c53c396069b618f6f276ec94fc45d17e3282d668979216e5d30be472115e4'],
|
||||
}),
|
||||
('tensorboard-plugin-wit', '1.8.0', {
|
||||
'source_tmpl': 'tensorboard_plugin_wit-%(version)s-py3-none-any.whl',
|
||||
'unpack_sources': False,
|
||||
'checksums': ['2a80d1c551d741e99b2f197bb915d8a133e24adb8da1732b840041860f91183a'],
|
||||
}),
|
||||
('tensorboard-plugin-profile', '2.4.0', {
|
||||
'source_tmpl': 'tensorboard_plugin_profile-%(version)s.tar.gz',
|
||||
'checksums': ['dfbf254ee960440e3b2518324f876a6d6704c60b936887d99214fa36988a206a'],
|
||||
}),
|
||||
('google-pasta', '0.2.0', {
|
||||
'modulename': 'pasta',
|
||||
'checksums': ['c9f2c8dfc8f96d0d5808299920721be30c9eec37f2389f28904f454565c8a16e'],
|
||||
}),
|
||||
('termcolor', '1.1.0', {
|
||||
'checksums': ['1d6d69ce66211143803fbc56652b41d73b4a400a2891d7bf7a1cdf4c02de613b'],
|
||||
}),
|
||||
('tensorflow-estimator', '2.4.0', {
|
||||
'source_tmpl': 'tensorflow_estimator-%(version)s-py2.py3-none-any.whl',
|
||||
'unpack_sources': False,
|
||||
'checksums': ['5b7b7bf2debe19a8794adacc43e8ba6459daa4efaf54d3302623994a359b17f0'],
|
||||
}),
|
||||
('astor', '0.8.1', {
|
||||
'checksums': ['6a6effda93f4e1ce9f618779b2dd1d9d84f1e32812c23a29b3fff6fd7f63fa5e'],
|
||||
}),
|
||||
('gast', '0.3.3', {
|
||||
'checksums': ['b881ef288a49aa81440d2c5eb8aeefd4c2bb8993d5f50edae7413a85bfdb3b57'],
|
||||
}),
|
||||
('opt-einsum', '3.3.0', {
|
||||
'source_tmpl': 'opt_einsum-%(version)s.tar.gz',
|
||||
'checksums': ['59f6475f77bbc37dcf7cd748519c0ec60722e91e63ca114e68821c0c54a46549'],
|
||||
}),
|
||||
('wrapt', '1.12.1', {
|
||||
'checksums': ['b62ffa81fb85f4332a4f609cab4ac40709470da05643a082ec1eb88e6d9b97d7'],
|
||||
}),
|
||||
('Keras-Preprocessing', '1.1.2', {
|
||||
'source_tmpl': 'Keras_Preprocessing-%(version)s.tar.gz',
|
||||
'checksums': ['add82567c50c8bc648c14195bf544a5ce7c1f76761536956c3d2978970179ef3'],
|
||||
}),
|
||||
('dill', '0.3.4', {
|
||||
'source_tmpl': '%(name)s-%(version)s.zip',
|
||||
'checksums': ['4ad2e60f025526219df9ac151b19760a'],
|
||||
}),
|
||||
('tblib', '1.7.0', {
|
||||
'checksums': ['059bd77306ea7b419d4f76016aef6d7027cc8a0785579b5aad198803435f882c'],
|
||||
}),
|
||||
('portpicker', '1.3.1', {
|
||||
'checksums': ['d2cdc776873635ed421315c4d22e63280042456bbfa07397817e687b142b9667'],
|
||||
}),
|
||||
(name, version, {
|
||||
'patches': [
|
||||
'TensorFlow-2.1.0_fix-cuda-build.patch',
|
||||
'TensorFlow-2.3.1_disable-float128-on-power.patch',
|
||||
'TensorFlow-2.4.0_add-default-shell-env.patch',
|
||||
'TensorFlow-2.4.0_fix-eigen-on-power.patch',
|
||||
'TensorFlow-2.4.0_downgrade-required-versions.patch',
|
||||
'TensorFlow-2.4.0_add-protobuf-deps.patch',
|
||||
'TensorFlow-2.4.0_add-missing-llvm-deps.patch',
|
||||
'TensorFlow-2.4.0_fix-absl-on-power.patch',
|
||||
'TensorFlow-2.4.0_dont-use-var-lock.patch',
|
||||
'TensorFlow-2.4.1_add-ldl.patch',
|
||||
'TensorFlow-2.4.1_remove-duplicate-gpu-tests.patch',
|
||||
],
|
||||
'source_tmpl': 'v%(version)s.tar.gz',
|
||||
'source_urls': ['https://github.com/tensorflow/tensorflow/archive/'],
|
||||
'test_script': 'TensorFlow-2.x_mnist-test.py',
|
||||
'test_tag_filters_cpu': '-gpu,-tpu,-no_cuda_on_cpu_tap,-no_pip,-no_oss,-oss_serial,-benchmark-test,-v1only',
|
||||
'test_targets': [
|
||||
'//tensorflow/core/...',
|
||||
'-//tensorflow/core:example_java_proto',
|
||||
'-//tensorflow/core/example:example_protos_closure',
|
||||
'//tensorflow/cc/...',
|
||||
'//tensorflow/c/...',
|
||||
'//tensorflow/python/...',
|
||||
# Requires access to CUPTI (privileged!)
|
||||
'-//tensorflow/core/profiler/internal/gpu:device_tracer_test',
|
||||
# Fails on some nodes but C API isn't installed anyway
|
||||
'-//tensorflow/c/eager:c_api_test_gpu',
|
||||
'-//tensorflow/c/eager:c_api_distributed_test',
|
||||
'-//tensorflow/c/eager:c_api_distributed_test_gpu',
|
||||
# Race condition with port picker: https://github.com/tensorflow/tensorflow/issues/46602
|
||||
'-//tensorflow/c/eager:c_api_cluster_test_gpu',
|
||||
'-//tensorflow/c/eager:c_api_remote_function_test',
|
||||
'-//tensorflow/c/eager:c_api_remote_function_test_gpu',
|
||||
'-//tensorflow/c/eager:c_api_remote_test_gpu',
|
||||
# Invalid alignment: https://github.com/tensorflow/tensorflow/issues/46460
|
||||
'-//tensorflow/core/kernels:sparse_matmul_op_test',
|
||||
'-//tensorflow/core/kernels:sparse_matmul_op_test_gpu',
|
||||
# Fails to open its own test.xml(?)
|
||||
'-//tensorflow/core/common_runtime:collective_param_resolver_local_test',
|
||||
# Fails on non-AVX-512 systems: https://github.com/tensorflow/tensorflow/issues/46532
|
||||
'-//tensorflow/core/common_runtime:mkl_layout_pass_test',
|
||||
'-//tensorflow/core/kernels/mkl:mkl_fused_ops_test',
|
||||
],
|
||||
'testopts': "--test_timeout=3600 --test_size_filters=small",
|
||||
'with_xla': True,
|
||||
'checksums': [
|
||||
'f681331f8fc0800883761c7709d13cda11942d4ad5ff9f44ad855e9dc78387e0', # v2.4.1.tar.gz
|
||||
'78c20aeaa7784b8ceb46238a81e8c2461137d28e0b576deeba8357d23fbe1f5a', # TensorFlow-2.1.0_fix-cuda-build.patch
|
||||
# TensorFlow-2.3.1_disable-float128-on-power.patch
|
||||
'a8369e92559cce4566ff831e615420fd98b83106c73ee3af7fbd5335c5fcd569',
|
||||
# TensorFlow-2.4.0_add-default-shell-env.patch
|
||||
'033a870b458406f4cabab878c4183cdf54cd7627648f24c8cc9f1964ff24d292',
|
||||
# TensorFlow-2.4.0_fix-eigen-on-power.patch
|
||||
'761303a9d5a0e78b833610891194e497a45f1218cfcb0ac4854a0d31d3156c2b',
|
||||
# TensorFlow-2.4.0_downgrade-required-versions.patch
|
||||
'ac8f53662ad0bb660089c17bb433faf1ce3c2238234a2c3be7d92c8e02c1a8d6',
|
||||
# TensorFlow-2.4.0_add-protobuf-deps.patch
|
||||
'0ae2f4f1f1dc5b85f61edbe8a4a91dcffd5cf7588fa46c6a143455e4bc41a64e',
|
||||
# TensorFlow-2.4.0_add-missing-llvm-deps.patch
|
||||
'ce8c41e75f9854e547d03de99ae72cf41afa967b20439e864bc4af3dd4f565c7',
|
||||
# TensorFlow-2.4.0_fix-absl-on-power.patch
|
||||
'cd0e1181cfc56c259cb57b7f9590816db5f5cde3fab39b3386c001359ca6e9fa',
|
||||
# TensorFlow-2.4.0_dont-use-var-lock.patch
|
||||
'b14f2493fd2edf79abd1c4f2dde6c98a3e7d5cb9c25ab9386df874d5f072d6b5',
|
||||
'ab57637e3e64a5ff8345573effed2b229c33579b9ac3c8ceb7e554d236890d4a', # TensorFlow-2.4.1_add-ldl.patch
|
||||
# TensorFlow-2.4.1_remove-duplicate-gpu-tests.patch
|
||||
'f384cd97e004673ae530b6e5cc826f8fddb46646991f1a228fc07b2aac87ee80',
|
||||
],
|
||||
}),
|
||||
]
|
||||
|
||||
moduleclass = 'lib'
|
||||
243
t/TensorFlow/TensorFlow-2.4.1-fosscuda-2020b.eb
Normal file
243
t/TensorFlow/TensorFlow-2.4.1-fosscuda-2020b.eb
Normal file
@ -0,0 +1,243 @@
|
||||
# IT4Innovations
|
||||
# LK 2023
|
||||
|
||||
easyblock = 'PythonBundle'
|
||||
|
||||
name = 'TensorFlow'
|
||||
version = '2.4.1'
|
||||
|
||||
homepage = 'https://www.tensorflow.org/'
|
||||
description = "An open-source software library for Machine Intelligence"
|
||||
|
||||
toolchain = {'name': 'fosscuda', 'version': '2020b'}
|
||||
toolchainopts = {'pic': True}
|
||||
|
||||
builddependencies = [
|
||||
('Bazel', '3.7.2'),
|
||||
('protobuf', '3.14.0'),
|
||||
# git 2.x required, see also https://github.com/tensorflow/tensorflow/issues/29053
|
||||
('git', '2.28.0', '-nodocs'),
|
||||
('pybind11', '2.6.0'),
|
||||
('pkgconfig', '1.5.1', '-python'), # For h5py
|
||||
('UnZip', '6.0'),
|
||||
]
|
||||
dependencies = [
|
||||
('cuDNN', '8.0.4.30', '-CUDA-%(cudaver)s', SYSTEM),
|
||||
('NCCL', '2.8.3', '-CUDA-%(cudaver)s'),
|
||||
('Python', '3.8.6'),
|
||||
# Next 2 are for h5py
|
||||
('SciPy-bundle', '2020.11'),
|
||||
('HDF5', '1.10.7'),
|
||||
('cURL', '7.72.0'),
|
||||
('double-conversion', '3.1.5'),
|
||||
('flatbuffers', '1.12.0'),
|
||||
('giflib', '5.2.1'),
|
||||
('hwloc', '2.2.0'),
|
||||
('ICU', '67.1'),
|
||||
('JsonCpp', '1.9.4'),
|
||||
('libjpeg-turbo', '2.0.5'),
|
||||
('LMDB', '0.9.24'),
|
||||
('NASM', '2.15.05'),
|
||||
('nsync', '1.24.0'),
|
||||
('SQLite', '3.33.0'),
|
||||
('PCRE', '8.44'),
|
||||
('protobuf-python', '3.14.0'),
|
||||
('flatbuffers-python', '1.12'),
|
||||
('typing-extensions', '3.7.4.3'),
|
||||
('libpng', '1.6.37'),
|
||||
('snappy', '1.1.8'),
|
||||
('zlib', '1.2.11'),
|
||||
]
|
||||
|
||||
use_pip = True
|
||||
sanity_pip_check = True
|
||||
|
||||
# Dependencies created and updated using findPythonDeps.sh:
|
||||
# https://gist.github.com/Flamefire/49426e502cd8983757bd01a08a10ae0d
|
||||
exts_list = [
|
||||
# TF 2.4 needs h5py 2.10, later versions allow 3.x
|
||||
('h5py', '2.10.0', {
|
||||
'patches': ['h5py-2.10.0_avoid-mpi-init.patch'],
|
||||
'checksums': [
|
||||
'84412798925dc870ffd7107f045d7659e60f5d46d1c70c700375248bf6bf512d', # h5py-2.10.0.tar.gz
|
||||
'6bacb71f5d9fbd7bd9a01018d7fe21b067a2317f33c4a7c21fde9cd404c1603f', # h5py-2.10.0_avoid-mpi-init.patch
|
||||
],
|
||||
'preinstallopts': 'HDF5_MPI=ON HDF5_DIR="$EBROOTHDF5" ',
|
||||
}),
|
||||
('Markdown', '3.3.3', {
|
||||
'checksums': ['5d9f2b5ca24bc4c7a390d22323ca4bad200368612b5aaa7796babf971d2b2f18'],
|
||||
}),
|
||||
('pyasn1-modules', '0.2.8', {
|
||||
'checksums': ['905f84c712230b2c592c19470d3ca8d552de726050d1d1716282a1f6146be65e'],
|
||||
}),
|
||||
('rsa', '4.7', {
|
||||
'checksums': ['69805d6b69f56eb05b62daea3a7dbd7aa44324ad1306445e05da8060232d00f4'],
|
||||
}),
|
||||
('cachetools', '4.2.0', {
|
||||
'checksums': ['3796e1de094f0eaca982441c92ce96c68c89cced4cd97721ab297ea4b16db90e'],
|
||||
}),
|
||||
('google-auth', '1.24.0', {
|
||||
'modulename': 'google.auth',
|
||||
'checksums': ['0b0e026b412a0ad096e753907559e4bdb180d9ba9f68dd9036164db4fdc4ad2e'],
|
||||
}),
|
||||
('oauthlib', '3.1.0', {
|
||||
'checksums': ['bee41cc35fcca6e988463cacc3bcb8a96224f470ca547e697b604cc697b2f889'],
|
||||
}),
|
||||
('requests-oauthlib', '1.3.0', {
|
||||
'checksums': ['b4261601a71fd721a8bd6d7aa1cc1d6a8a93b4a9f5e96626f8e4d91e8beeaa6a'],
|
||||
}),
|
||||
('google-auth-oauthlib', '0.4.2', {
|
||||
'checksums': ['65b65bc39ad8cab15039b35e5898455d3d66296d0584d96fe0e79d67d04c51d9'],
|
||||
}),
|
||||
('Werkzeug', '1.0.1', {
|
||||
'checksums': ['6c80b1e5ad3665290ea39320b91e1be1e0d5f60652b964a3070216de83d2e47c'],
|
||||
}),
|
||||
('absl-py', '0.10.0', {
|
||||
'modulename': 'absl',
|
||||
'checksums': ['b20f504a7871a580be5268a18fbad48af4203df5d33dbc9272426cb806245a45'],
|
||||
}),
|
||||
('astunparse', '1.6.3', {
|
||||
'checksums': ['5ad93a8456f0d084c3456d059fd9a92cce667963232cbf763eac3bc5b7940872'],
|
||||
}),
|
||||
('grpcio', '1.32.0', {
|
||||
'modulename': 'grpc',
|
||||
'checksums': ['01d3046fe980be25796d368f8fc5ff34b7cf5e1444f3789a017a7fe794465639'],
|
||||
'preinstallopts': "export GRPC_PYTHON_BUILD_EXT_COMPILER_JOBS=%(parallel)s && ",
|
||||
}),
|
||||
('gviz-api', '1.9.0', {
|
||||
'source_tmpl': 'gviz_api-%(version)s.tar.gz',
|
||||
'checksums': ['43d13ccc21834d0501b33a291ef3265e933dbb4bbdca3d34b1ed0a048c0ef640'],
|
||||
}),
|
||||
('tensorboard', version, {
|
||||
'source_tmpl': 'tensorboard-%(version)s-py3-none-any.whl',
|
||||
'unpack_sources': False,
|
||||
'checksums': ['7b8c53c396069b618f6f276ec94fc45d17e3282d668979216e5d30be472115e4'],
|
||||
}),
|
||||
('tensorboard-plugin-wit', '1.8.0', {
|
||||
'source_tmpl': 'tensorboard_plugin_wit-%(version)s-py3-none-any.whl',
|
||||
'unpack_sources': False,
|
||||
'checksums': ['2a80d1c551d741e99b2f197bb915d8a133e24adb8da1732b840041860f91183a'],
|
||||
}),
|
||||
('tensorboard-plugin-profile', '2.4.0', {
|
||||
'source_tmpl': 'tensorboard_plugin_profile-%(version)s.tar.gz',
|
||||
'checksums': ['dfbf254ee960440e3b2518324f876a6d6704c60b936887d99214fa36988a206a'],
|
||||
}),
|
||||
('google-pasta', '0.2.0', {
|
||||
'modulename': 'pasta',
|
||||
'checksums': ['c9f2c8dfc8f96d0d5808299920721be30c9eec37f2389f28904f454565c8a16e'],
|
||||
}),
|
||||
('termcolor', '1.1.0', {
|
||||
'checksums': ['1d6d69ce66211143803fbc56652b41d73b4a400a2891d7bf7a1cdf4c02de613b'],
|
||||
}),
|
||||
('tensorflow-estimator', '2.4.0', {
|
||||
'source_tmpl': 'tensorflow_estimator-%(version)s-py2.py3-none-any.whl',
|
||||
'unpack_sources': False,
|
||||
'checksums': ['5b7b7bf2debe19a8794adacc43e8ba6459daa4efaf54d3302623994a359b17f0'],
|
||||
}),
|
||||
('astor', '0.8.1', {
|
||||
'checksums': ['6a6effda93f4e1ce9f618779b2dd1d9d84f1e32812c23a29b3fff6fd7f63fa5e'],
|
||||
}),
|
||||
('gast', '0.3.3', {
|
||||
'checksums': ['b881ef288a49aa81440d2c5eb8aeefd4c2bb8993d5f50edae7413a85bfdb3b57'],
|
||||
}),
|
||||
('opt-einsum', '3.3.0', {
|
||||
'source_tmpl': 'opt_einsum-%(version)s.tar.gz',
|
||||
'checksums': ['59f6475f77bbc37dcf7cd748519c0ec60722e91e63ca114e68821c0c54a46549'],
|
||||
}),
|
||||
('wrapt', '1.12.1', {
|
||||
'checksums': ['b62ffa81fb85f4332a4f609cab4ac40709470da05643a082ec1eb88e6d9b97d7'],
|
||||
}),
|
||||
('Keras-Preprocessing', '1.1.2', {
|
||||
'source_tmpl': 'Keras_Preprocessing-%(version)s.tar.gz',
|
||||
'checksums': ['add82567c50c8bc648c14195bf544a5ce7c1f76761536956c3d2978970179ef3'],
|
||||
}),
|
||||
('dill', '0.3.4', {
|
||||
'source_tmpl': '%(name)s-%(version)s.zip',
|
||||
'checksums': ['4ad2e60f025526219df9ac151b19760a'],
|
||||
}),
|
||||
('tblib', '1.7.0', {
|
||||
'checksums': ['059bd77306ea7b419d4f76016aef6d7027cc8a0785579b5aad198803435f882c'],
|
||||
}),
|
||||
('portpicker', '1.3.1', {
|
||||
'checksums': ['d2cdc776873635ed421315c4d22e63280042456bbfa07397817e687b142b9667'],
|
||||
}),
|
||||
(name, version, {
|
||||
'patches': [
|
||||
'TensorFlow-2.1.0_fix-cuda-build.patch',
|
||||
'TensorFlow-2.3.1_disable-float128-on-power.patch',
|
||||
'TensorFlow-2.4.0_add-default-shell-env.patch',
|
||||
'TensorFlow-2.4.0_fix-eigen-on-power.patch',
|
||||
'TensorFlow-2.4.0_downgrade-required-versions.patch',
|
||||
'TensorFlow-2.4.0_add-protobuf-deps.patch',
|
||||
'TensorFlow-2.4.0_add-missing-llvm-deps.patch',
|
||||
'TensorFlow-2.4.0_fix-absl-on-power.patch',
|
||||
'TensorFlow-2.4.0_dont-use-var-lock.patch',
|
||||
'TensorFlow-2.4.1_add-ldl.patch',
|
||||
'TensorFlow-2.4.1_fix-min-priority-test.patch',
|
||||
'TensorFlow-2.4.1_remove-duplicate-gpu-tests.patch',
|
||||
],
|
||||
'source_tmpl': 'v%(version)s.tar.gz',
|
||||
'source_urls': ['https://github.com/tensorflow/tensorflow/archive/'],
|
||||
'test_script': 'TensorFlow-2.x_mnist-test.py',
|
||||
'test_tag_filters_cpu': '-gpu,-tpu,-no_cuda_on_cpu_tap,-no_pip,-no_oss,-oss_serial,-benchmark-test,-v1only',
|
||||
'test_tag_filters_gpu': 'gpu,-no_gpu,-nogpu,-no_pip,-no_oss,-oss_serial,-benchmark-test,-v1only',
|
||||
'test_targets': [
|
||||
'//tensorflow/core/...',
|
||||
'-//tensorflow/core:example_java_proto',
|
||||
'-//tensorflow/core/example:example_protos_closure',
|
||||
'//tensorflow/cc/...',
|
||||
'//tensorflow/c/...',
|
||||
'//tensorflow/python/...',
|
||||
# Requires access to CUPTI (privileged!)
|
||||
'-//tensorflow/core/profiler/internal/gpu:device_tracer_test',
|
||||
# Fails on some nodes but C API isn't installed anyway
|
||||
'-//tensorflow/c/eager:c_api_test_gpu',
|
||||
'-//tensorflow/c/eager:c_api_distributed_test',
|
||||
'-//tensorflow/c/eager:c_api_distributed_test_gpu',
|
||||
# Race condition with port picker: https://github.com/tensorflow/tensorflow/issues/46602
|
||||
'-//tensorflow/c/eager:c_api_cluster_test_gpu',
|
||||
'-//tensorflow/c/eager:c_api_remote_function_test',
|
||||
'-//tensorflow/c/eager:c_api_remote_function_test_gpu',
|
||||
'-//tensorflow/c/eager:c_api_remote_test_gpu',
|
||||
# Invalid alignment: https://github.com/tensorflow/tensorflow/issues/46460
|
||||
'-//tensorflow/core/kernels:sparse_matmul_op_test',
|
||||
'-//tensorflow/core/kernels:sparse_matmul_op_test_gpu',
|
||||
# Fails to open its own test.xml(?)
|
||||
'-//tensorflow/core/common_runtime:collective_param_resolver_local_test',
|
||||
# Fails on non-AVX-512 systems: https://github.com/tensorflow/tensorflow/issues/46532
|
||||
'-//tensorflow/core/common_runtime:mkl_layout_pass_test',
|
||||
'-//tensorflow/core/kernels/mkl:mkl_fused_ops_test',
|
||||
],
|
||||
'testopts': "--test_timeout=3600 --test_size_filters=small",
|
||||
'testopts_gpu': "--test_timeout=3600 --test_size_filters=small " +
|
||||
"--run_under=//tensorflow/tools/ci_build/gpu_build:parallel_gpu_execute",
|
||||
'with_xla': True,
|
||||
'checksums': [
|
||||
'f681331f8fc0800883761c7709d13cda11942d4ad5ff9f44ad855e9dc78387e0', # v2.4.1.tar.gz
|
||||
'78c20aeaa7784b8ceb46238a81e8c2461137d28e0b576deeba8357d23fbe1f5a', # TensorFlow-2.1.0_fix-cuda-build.patch
|
||||
# TensorFlow-2.3.1_disable-float128-on-power.patch
|
||||
'a8369e92559cce4566ff831e615420fd98b83106c73ee3af7fbd5335c5fcd569',
|
||||
# TensorFlow-2.4.0_add-default-shell-env.patch
|
||||
'033a870b458406f4cabab878c4183cdf54cd7627648f24c8cc9f1964ff24d292',
|
||||
# TensorFlow-2.4.0_fix-eigen-on-power.patch
|
||||
'761303a9d5a0e78b833610891194e497a45f1218cfcb0ac4854a0d31d3156c2b',
|
||||
# TensorFlow-2.4.0_downgrade-required-versions.patch
|
||||
'ac8f53662ad0bb660089c17bb433faf1ce3c2238234a2c3be7d92c8e02c1a8d6',
|
||||
# TensorFlow-2.4.0_add-protobuf-deps.patch
|
||||
'0ae2f4f1f1dc5b85f61edbe8a4a91dcffd5cf7588fa46c6a143455e4bc41a64e',
|
||||
# TensorFlow-2.4.0_add-missing-llvm-deps.patch
|
||||
'ce8c41e75f9854e547d03de99ae72cf41afa967b20439e864bc4af3dd4f565c7',
|
||||
# TensorFlow-2.4.0_fix-absl-on-power.patch
|
||||
'cd0e1181cfc56c259cb57b7f9590816db5f5cde3fab39b3386c001359ca6e9fa',
|
||||
# TensorFlow-2.4.0_dont-use-var-lock.patch
|
||||
'b14f2493fd2edf79abd1c4f2dde6c98a3e7d5cb9c25ab9386df874d5f072d6b5',
|
||||
'ab57637e3e64a5ff8345573effed2b229c33579b9ac3c8ceb7e554d236890d4a', # TensorFlow-2.4.1_add-ldl.patch
|
||||
# TensorFlow-2.4.1_fix-min-priority-test.patch
|
||||
'389febce9a0612fd457daf4cb18c02f77fc7311bacae0963602a3198d9f2737f',
|
||||
# TensorFlow-2.4.1_remove-duplicate-gpu-tests.patch
|
||||
'f384cd97e004673ae530b6e5cc826f8fddb46646991f1a228fc07b2aac87ee80',
|
||||
],
|
||||
}),
|
||||
]
|
||||
|
||||
moduleclass = 'lib'
|
||||
Loading…
x
Reference in New Issue
Block a user