Merge branch 'it4i-barbora'

This commit is contained in:
Lukas Krupcik 2022-06-13 10:47:30 +02:00
commit a86af154cb
587 changed files with 5975 additions and 6013 deletions

View File

@ -22,11 +22,11 @@ dependencies = [
('numpy', '1.13.0-Python-2.7.13-base', '', True),
]
commands = "cd alm && mv Makefile.linux Makefile && make && cd .. && "
commands += "cd anphon && mv Makefile.linux Makefile && make && cd .. && "
commands += "cd tools && make "
local_commands = "cd alm && mv Makefile.linux Makefile && make && cd .. && "
local_commands += "cd anphon && mv Makefile.linux Makefile && make && cd .. && "
local_commands += "cd tools && make "
cmds_map = [('.*', commands)]
cmds_map = [('.*', local_commands)]
files_to_copy = [
(['alm/alm', 'anphon/anphon'], 'bin'),

View File

@ -15,9 +15,9 @@ toolchain = SYSTEM
source_urls = [FTPGNOME_SOURCE]
sources = [SOURCELOWER_TAR_XZ]
glibver = '2.52.0'
local_glibver = '2.52.0'
dependencies = [
('GLib', glibver),
('GLib', local_glibver),
('GObject-Introspection', '1.47.1')
]

View File

@ -10,8 +10,8 @@ description = """ATLAS (Automatically Tuned Linear Algebra Software) is the appl
toolchain = {'name': 'GCC', 'version': '5.4.0-2.26'}
toolchainopts = {'pic': True}
lapackver = '3.6.1'
versionsuffix = '-LAPACK-%s' % lapackver
local_lapackver = '3.6.1'
versionsuffix = '-LAPACK-%s' % local_lapackver
source_urls = [
('http://sourceforge.net/projects/math-atlas/files/Stable/%(version)s',
@ -20,7 +20,7 @@ source_urls = [
]
sources = [
'%(namelower)s%(version)s.tar.bz2',
'lapack-%s.tgz' % lapackver,
'lapack-%s.tgz' % local_lapackver,
]
# build full LAPACK library with supplied netlib LAPACK

View File

@ -10,8 +10,8 @@ description = """ATLAS (Automatically Tuned Linear Algebra Software) is the appl
toolchain = {'name': 'GCC', 'version': '5.4.0-2.26'}
toolchainopts = {'pic': True}
lapackver = '3.6.1'
versionsuffix = '-LAPACK-%s' % lapackver
local_lapackver = '3.6.1'
versionsuffix = '-LAPACK-%s' % local_lapackver
source_urls = [
('http://sourceforge.net/projects/math-atlas/files/Stable/%(version)s',
@ -20,7 +20,7 @@ source_urls = [
]
sources = [
'%(namelower)s%(version)s.tar.bz2',
'lapack-%s.tgz' % lapackver,
'lapack-%s.tgz' % local_lapackver,
]
# build full LAPACK library with supplied netlib LAPACK

View File

@ -12,8 +12,8 @@ description = """ATLAS (Automatically Tuned Linear Algebra Software) is the appl
toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'}
toolchainopts = {'pic': True}
lapackver = '3.6.1'
versionsuffix = '-LAPACK-%s' % lapackver
local_lapackver = '3.6.1'
versionsuffix = '-LAPACK-%s' % local_lapackver
source_urls = [
('http://sourceforge.net/projects/math-atlas/files/Stable/%(version)s',
@ -22,7 +22,7 @@ source_urls = [
]
sources = [
'%(namelower)s%(version)s.tar.bz2',
'lapack-%s.tgz' % lapackver,
'lapack-%s.tgz' % local_lapackver,
]
preconfigopts = 'export CXXFLAGS="-O3 -fPIC" && '
@ -35,7 +35,7 @@ configopts = "-Ss f77lib '-L$(EBROOTGCC)/lib64 -lgfortran' "
#configopts += '-b 64 -D c -DPentiumCPS=2500 '
# anselm
configopts += '-b 64 -D c -DPentiumCPS=2300 '
configopts += '--with-netlib-lapack-tarfile=/apps/easybuild/sources/a/ATLAS/lapack-%s.tgz ' % lapackver
configopts += '--with-netlib-lapack-tarfile=/apps/easybuild/sources/a/ATLAS/lapack-%s.tgz ' % local_lapackver
configopts += '-Fa alg -fPIC'
prebuildopts = 'cd build && '
preinstallopts = 'cd build && '

View File

@ -1,11 +1,11 @@
name = 'Amber'
version = '16'
ambertools_ver = '16'
local_ambertools_ver = '16'
# Patch levels from http://ambermd.org/bugfixes16.html and
# http://ambermd.org/bugfixesat.html
patchlevels = (5, 14) # (AmberTools, Amber)
versionsuffix = '-AmberTools-%s-patchlevel-%s-%s-serial' % (
ambertools_ver, patchlevels[0], patchlevels[1])
local_ambertools_ver, patchlevels[0], patchlevels[1])
homepage = 'http://ambermd.org/amber.html'
description = """Amber (originally Assisted Model Building with Energy
@ -17,7 +17,7 @@ toolchainopts = {'usempi': False}
sources = [
'Amber%(version)s.tar.bz2',
'AmberTools%s.tar.bz2' % ambertools_ver,
'AmberTools%s.tar.bz2' % local_ambertools_ver,
]
patches = ['Amber-%(version)s_fix-hardcoding.patch']

View File

@ -1,11 +1,11 @@
name = 'Amber'
version = '16'
ambertools_ver = '16'
local_ambertools_ver = '16'
# Patch levels from http://ambermd.org/bugfixes16.html and
# http://ambermd.org/bugfixesat.html
patchlevels = (5, 14) # (AmberTools, Amber)
versionsuffix = '-AmberTools-%s-patchlevel-%s-%s' % (
ambertools_ver, patchlevels[0], patchlevels[1])
local_ambertools_ver, patchlevels[0], patchlevels[1])
homepage = 'http://ambermd.org/amber.html'
description = """Amber (originally Assisted Model Building with Energy
@ -17,7 +17,7 @@ toolchainopts = {'usempi': True}
sources = [
'Amber%(version)s.tar.bz2',
'AmberTools%s.tar.bz2' % ambertools_ver,
'AmberTools%s.tar.bz2' % local_ambertools_ver,
]
patches = ['Amber-%(version)s_fix-hardcoding.patch']

View File

@ -1,11 +1,11 @@
name = 'Amber'
version = '16'
ambertools_ver = '16'
local_ambertools_ver = '16'
# Patch levels from http://ambermd.org/bugfixes16.html and
# http://ambermd.org/bugfixesat.html
patchlevels = (5, 14) # (AmberTools, Amber)
versionsuffix = '-AmberTools-%s-patchlevel-%s-%s-CUDA' % (
ambertools_ver, patchlevels[0], patchlevels[1])
local_ambertools_ver, patchlevels[0], patchlevels[1])
homepage = 'http://ambermd.org/amber.html'
description = """Amber (originally Assisted Model Building with Energy
@ -17,7 +17,7 @@ toolchainopts = {'usempi': True}
sources = [
'Amber%(version)s.tar.bz2',
'AmberTools%s.tar.bz2' % ambertools_ver,
'AmberTools%s.tar.bz2' % local_ambertools_ver,
]
patches = ['Amber-%(version)s_fix-hardcoding.patch',

View File

@ -18,17 +18,17 @@ description = """Amber (originally Assisted Model Building with Energy
toolchain = {'name': 'intel', 'version': '2016a'}
toolchainopts = {'openmp': False, 'usempi': True}
ambertools_ver = '15'
local_ambertools_ver = '15'
sources = [
# 'Amber%(version)s.tar.bz2',
'AmberTools%s.tar.bz2' % ambertools_ver,
'AmberTools%s.tar.bz2' % local_ambertools_ver,
]
configopts = '--no-updates'
# patches = [
# 'Amber-%(version)s_fix-hardcoding.patch',
# 'AmberTools-%s_fix-mdgx-print-bug.patch' % ambertools_ver,
# 'AmberTools-%s_fix-mdgx-print-bug.patch' % local_ambertools_ver,
#]
dependencies = [
@ -38,8 +38,8 @@ dependencies = [
('Python', '2.7.11'),
]
patchlevels = (13, 13)
patchruns = 1
local_patchlevels = (13, 13)
local_patchruns = 1
versionsuffix = '-Python-2.7.11)'

View File

@ -11,14 +11,14 @@ description = """Amber (originally Assisted Model Building with Energy
toolchain = {'name': 'intel', 'version': '2015b'}
toolchainopts = {'openmp': False, 'usempi': True}
ambertools_ver = '16'
local_ambertools_ver = '16'
sources = [
# 'Amber%(version)s.tar.bz2',
'AmberTools%s.tar.bz2' % ambertools_ver,
'AmberTools%s.tar.bz2' % local_ambertools_ver,
]
patches = [
# 'Amber-%(version)s_fix-hardcoding.patch',
'AmberTools-%s_fix-mdgx-print-bug.patch' % ambertools_ver,
'AmberTools-%s_fix-mdgx-print-bug.patch' % local_ambertools_ver,
]
dependencies = [
@ -28,10 +28,10 @@ dependencies = [
('Python', '2.7.11'),
]
patchlevels = (13, 13)
patchruns = 1
local_patchlevels = (13, 13)
local_patchruns = 1
versionsuffix = '-AmberTools-%s-patchlevel-%d-%d' % (
ambertools_ver, patchlevels[0], patchlevels[1])
local_ambertools_ver, local_patchlevels[0], local_patchlevels[1])
moduleclass = 'chem'

View File

@ -11,10 +11,10 @@ toolchain = {'name': 'foss', 'version': '2015b'}
source_urls = [SOURCEFORGE_SOURCE]
sources = ['%(name)s_%(version)s.tar.gz']
java = 'Java'
javaver = '1.8.0_66'
versionsuffix = '-%s-%s' % (java, javaver)
dependencies = [(java, javaver, '', True)]
local_java = 'Java'
local_javaver = '1.8.0_66'
versionsuffix = '-%s-%s' % (local_java, local_javaver)
dependencies = [(local_java, local_javaver, '', True)]
prebuildopts = 'cd jni && '

View File

@ -11,10 +11,10 @@ toolchain = {'name': 'foss', 'version': '2015b'}
source_urls = [SOURCEFORGE_SOURCE]
sources = ['%(name)s_%(version)s.tar.gz']
java = 'Java'
javaver = '1.8.0_74'
versionsuffix = '-%s-%s' % (java, javaver)
dependencies = [(java, javaver, '', True)]
local_java = 'Java'
local_javaver = '1.8.0_74'
versionsuffix = '-%s-%s' % (local_java, local_javaver)
dependencies = [(local_java, local_javaver, '', True)]
prebuildopts = 'cd jni && '

View File

@ -22,22 +22,22 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'}
source_urls = ['http://biopython.org/DIST']
sources = ['%(namelower)s-%(version)s.tar.gz']
python = 'Python'
local_python = 'Python'
local_pyver = '2.7.3'
local_pyshortver = '.'.join(local_pyver.split('.')[:2])
versionsuffix = "-%s-%s" % (python, local_pyver)
versionsuffix = "-%s-%s" % (local_python, local_pyver)
dependencies = [
(python, local_pyver),
(local_python, local_pyver),
('numpy', '1.6.2', versionsuffix)
]
sanity_check_paths = {
'files': [], 'dirs': [
'lib/python%s/site-packages/Bio' %
local_pyshortver, 'lib/python%s/site-packages/biopython-%s-py%s.egg-info' %
(local_pyshortver, version, local_pyshortver), 'lib/python%s/site-packages/BioSQL' %
'lib/local_python%s/site-packages/Bio' %
local_pyshortver, 'lib/local_python%s/site-packages/biopython-%s-py%s.egg-info' %
(local_pyshortver, version, local_pyshortver), 'lib/local_python%s/site-packages/BioSQL' %
local_pyshortver]}
options = {'modulename': 'Bio'}

View File

@ -22,22 +22,22 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'}
source_urls = ['http://biopython.org/DIST']
sources = ['%(namelower)s-%(version)s.tar.gz']
python = 'Python'
local_python = 'Python'
local_pyver = '2.7.3'
local_pyshortver = '.'.join(local_pyver.split('.')[:2])
versionsuffix = "-%s-%s" % (python, local_pyver)
versionsuffix = "-%s-%s" % (local_python, local_pyver)
dependencies = [
(python, local_pyver),
(local_python, local_pyver),
('numpy', '1.6.2', versionsuffix)
]
sanity_check_paths = {
'files': [], 'dirs': [
'lib/python%s/site-packages/Bio' %
local_pyshortver, 'lib/python%s/site-packages/biopython-%s-py%s.egg-info' %
(local_pyshortver, version, local_pyshortver), 'lib/python%s/site-packages/BioSQL' %
'lib/local_python%s/site-packages/Bio' %
local_pyshortver, 'lib/local_python%s/site-packages/biopython-%s-py%s.egg-info' %
(local_pyshortver, version, local_pyshortver), 'lib/local_python%s/site-packages/BioSQL' %
local_pyshortver]}
options = {'modulename': 'Bio'}

View File

@ -10,12 +10,12 @@ toolchainopts = {'pic': True, 'usempi': True}
source_urls = [SOURCEFORGE_SOURCE]
sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))]
pythonversion = '2.7.3'
versionsuffix = '-Python-%s' % pythonversion
local_pythonversion = '2.7.3'
versionsuffix = '-Python-%s' % local_pythonversion
dependencies = [
('bzip2', '1.0.6'),
('Python', pythonversion),
('Python', local_pythonversion),
]
# also build boost_mpi

View File

@ -11,13 +11,13 @@ toolchainopts = {'pic': True, 'usempi': True}
source_urls = [SOURCEFORGE_SOURCE]
sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))]
pythonversion = '2.7.9'
versionsuffix = '-Python-%s' % pythonversion
local_pythonversion = '2.7.9'
versionsuffix = '-Python-%s' % local_pythonversion
dependencies = [
('bzip2', '1.0.6'),
('zlib', '1.2.8'),
('Python', pythonversion),
('Python', local_pythonversion),
]
# also build boost_mpi

View File

@ -11,13 +11,13 @@ toolchainopts = {'pic': True, 'usempi': True}
source_urls = [SOURCEFORGE_SOURCE]
sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))]
pythonversion = '2.7.9'
versionsuffix = '-Python-%s' % pythonversion
local_pythonversion = '2.7.9'
versionsuffix = '-Python-%s' % local_pythonversion
dependencies = [
('bzip2', '1.0.6'),
('zlib', '1.2.8'),
('Python', pythonversion),
('Python', local_pythonversion),
]
# also build boost_mpi

View File

@ -10,13 +10,13 @@ toolchainopts = {'pic': True, 'usempi': True}
source_urls = [SOURCEFORGE_SOURCE]
sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))]
pythonversion = '2.7.9'
versionsuffix = '-Python-%s' % pythonversion
local_pythonversion = '2.7.9'
versionsuffix = '-Python-%s' % local_pythonversion
dependencies = [
('bzip2', '1.0.6'),
('zlib', '1.2.8'),
('Python', pythonversion),
('Python', local_pythonversion),
]
# also build boost_mpi

View File

@ -14,12 +14,12 @@ toolchainopts = {'pic': True, 'usempi': True}
source_urls = [SOURCEFORGE_SOURCE]
sources = ['%%(namelower)s_%s.tar.bz2' % '_'.join(version.split('.'))]
pythonversion = '2.7.11'
versionsuffix = '-Python-%s' % pythonversion
local_pythonversion = '2.7.11'
versionsuffix = '-Python-%s' % local_pythonversion
dependencies = [
('bzip2', '1.0.6'),
('Python', pythonversion),
('Python', local_pythonversion),
]
# also build boost_mpi

View File

@ -11,13 +11,13 @@ toolchainopts = {'pic': True, 'usempi': True}
source_urls = [SOURCEFORGE_SOURCE]
sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))]
pythonversion = '2.7.9'
versionsuffix = '-Python-%s' % pythonversion
local_pythonversion = '2.7.9'
versionsuffix = '-Python-%s' % local_pythonversion
dependencies = [
('bzip2', '1.0.6'),
('zlib', '1.2.8'),
('Python', pythonversion),
('Python', local_pythonversion),
]
# also build boost_mpi

View File

@ -10,13 +10,13 @@ toolchainopts = {'pic': True, 'usempi': True}
source_urls = [SOURCEFORGE_SOURCE]
sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))]
pythonversion = '2.7.13'
versionsuffix = '-Python-%s' % pythonversion
local_pythonversion = '2.7.13'
versionsuffix = '-Python-%s' % local_pythonversion
dependencies = [
('bzip2', '1.0.6', '', True),
('zlib', '1.2.11', '', True),
('Python', pythonversion, '', True)
('Python', local_pythonversion, '', True)
]
configopts = '--with-python=$EBROOTPYTHON/bin/python'

View File

@ -10,13 +10,13 @@ toolchainopts = {'pic': True, 'usempi': True}
source_urls = [SOURCEFORGE_SOURCE]
sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))]
pythonversion = '2.7.13'
versionsuffix = '-Python-%s' % pythonversion
local_pythonversion = '2.7.13'
versionsuffix = '-Python-%s' % local_pythonversion
dependencies = [
('bzip2', '1.0.6', '', True),
('zlib', '1.2.11', '', True),
('Python', pythonversion, '', True)
('Python', local_pythonversion, '', True)
]
configopts = '--with-python=$EBROOTPYTHON/bin/python'

View File

@ -10,13 +10,13 @@ toolchainopts = {'pic': True, 'usempi': True}
source_urls = [SOURCEFORGE_SOURCE]
sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))]
pythonversion = '2.7.13'
versionsuffix = '-Python-%s' % pythonversion
local_pythonversion = '2.7.13'
versionsuffix = '-Python-%s' % local_pythonversion
dependencies = [
('bzip2', '1.0.6', '', True),
('zlib', '1.2.11', '', True),
('Python', pythonversion, '', True)
('Python', local_pythonversion, '', True)
]
configopts = '--with-python=$EBROOTPYTHON/bin/python '

View File

@ -10,9 +10,9 @@ FITS (Flexible Image Transport System) data format."""
toolchain = {'name': 'intel', 'version': '2015a'}
toolchainopts = {'optarch': True, 'pic': True}
srcversion = '%s0' % version.replace('.', '')
local_srcversion = '%s0' % version.replace('.', '')
source_urls = ['ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/']
sources = ['%%(namelower)s%s.tar.gz' % srcversion]
sources = ['%%(namelower)s%s.tar.gz' % local_srcversion]
sanity_check_paths = {
'files': ["lib/libcfitsio.a"],

View File

@ -10,9 +10,9 @@ FITS (Flexible Image Transport System) data format."""
toolchain = {'name': 'foss', 'version': '2016a'}
toolchainopts = {'optarch': True, 'pic': True}
srcversion = '%s0' % version.replace('.', '')
local_srcversion = '%s0' % version.replace('.', '')
source_urls = ['ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/']
sources = ['%%(namelower)s%s.tar.gz' % srcversion]
sources = ['%%(namelower)s%s.tar.gz' % local_srcversion]
sanity_check_paths = {
'files': ["lib/libcfitsio.a"],

View File

@ -10,9 +10,9 @@ FITS (Flexible Image Transport System) data format."""
toolchain = {'name': 'intel', 'version': '2016a'}
toolchainopts = {'optarch': True, 'pic': True}
srcversion = '%s0' % version.replace('.', '')
local_srcversion = '%s0' % version.replace('.', '')
source_urls = ['ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/']
sources = ['%%(namelower)s%s.tar.gz' % srcversion]
sources = ['%%(namelower)s%s.tar.gz' % local_srcversion]
sanity_check_paths = {
'files': ["lib/libcfitsio.a"],

View File

@ -15,20 +15,20 @@ sources = [SOURCELOWER_TAR_GZ]
patches = ['CVXOPT-blas-lapack.patch']
python = 'Python'
pythonver = '2.7.3'
pythonshortver = '.'.join(pythonver.split('.')[0:2])
versionsuffix = '-%s-%s' % (python, pythonver)
local_python = 'Python'
local_pythonver = '2.7.3'
local_pythonshortver = '.'.join(local_pythonver.split('.')[0:2])
versionsuffix = '-%s-%s' % (local_python, local_pythonver)
dependencies = [
(python, pythonver),
(local_python, local_pythonver),
]
start_dir = 'src'
sanity_check_paths = {
'files': [],
'dirs': ['lib/python%s/site-packages/%%(namelower)s' % pythonshortver],
'dirs': ['lib/local_python%s/site-packages/%%(namelower)s' % local_pythonshortver],
}
moduleclass = 'math'

View File

@ -16,20 +16,20 @@ sources = [SOURCELOWER_TAR_GZ]
patches = ['CVXOPT-blas-lapack.patch']
python = 'Python'
pythonver = '2.7.3'
pythonshortver = '.'.join(pythonver.split('.')[0:2])
versionsuffix = '-%s-%s' % (python, pythonver)
local_python = 'Python'
local_pythonver = '2.7.3'
local_pythonshortver = '.'.join(local_pythonver.split('.')[0:2])
versionsuffix = '-%s-%s' % (local_python, local_pythonver)
dependencies = [
(python, pythonver),
(local_python, local_pythonver),
]
start_dir = 'src'
sanity_check_paths = {
'files': [],
'dirs': ['lib/python%s/site-packages/%%(namelower)s' % pythonshortver],
'dirs': ['lib/local_python%s/site-packages/%%(namelower)s' % local_pythonshortver],
}
moduleclass = 'math'

View File

@ -3,8 +3,8 @@ easyblock = 'CMakeMake'
name = 'Caffe'
version = '1.0'
cudaversion = '8.0.44'
versionsuffix = '-CUDA-%s-Python-%%(local_pyver)s' % cudaversion
local_cudaversion = '8.0.44'
versionsuffix = '-CUDA-%s-Python-%%(local_pyver)s' % local_cudaversion
homepage = 'https://github.com/BVLC/caffe'
description = """
@ -23,19 +23,19 @@ builddependencies = [
('CMake', '3.8.1', '', True),
]
protobuf_ver = '3.2.0'
local_protobuf_ver = '3.2.0'
dependencies = [
('glog', '0.3.4', '', True),
('gflags', '2.1.2', '', True),
('OpenCV', '3.1.0', '', True),
('CUDA', cudaversion, '', True),
('cuDNN', '5.1', '-CUDA-%s' % cudaversion, True),
('CUDA', local_cudaversion, '', True),
('cuDNN', '5.1', '-CUDA-%s' % local_cudaversion, True),
('LMDB', '0.9.18', '', True),
('LevelDB', '1.18', '', True),
('snappy', '1.1.3', '', True),
('protobuf', protobuf_ver),
# ('protobuf-python', protobuf_ver, '-Python-%(local_pyver)s'),
('protobuf', local_protobuf_ver),
# ('protobuf-python', local_protobuf_ver, '-Python-%(local_pyver)s'),
('HDF5', '1.8.16', '-serial'),
('Boost', '1.63.0', '-Python-%(local_pyver)s'),
('Python', '2.7.13', '', True),

View File

@ -22,11 +22,11 @@ builddependencies = [
('3to2', '1.1.1', versionsuffix),
]
common_opts = 'env_vars=all CC="$CC" CXX="$CXX" blas_lapack_libs=mkl_rt blas_lapack_dir=$BLAS_LAPACK_LIB_DIR'
common_opts += ' sundials_include=$EBROOTSUNDIALS/include sundials_libdir=$EBROOTSUNDIALS/lib'
buildopts = 'build ' + common_opts
runtest = 'test ' + common_opts
buildopts = 'install ' + common_opts
local_common_opts = 'env_vars=all CC="$CC" CXX="$CXX" blas_lapack_libs=mkl_rt blas_lapack_dir=$BLAS_LAPACK_LIB_DIR'
local_common_opts += ' sundials_include=$EBROOTSUNDIALS/include sundials_libdir=$EBROOTSUNDIALS/lib'
buildopts = 'build ' + local_common_opts
runtest = 'test ' + local_common_opts
buildopts = 'install ' + local_common_opts
prefix_arg = 'prefix='
modextrapaths = {'PYTHONPATH': ['lib/python%(local_pyshortver)s/site-packages']}

View File

@ -2,7 +2,7 @@ easyblock = 'MakeCp'
name = 'Commet'
version = '20150415'
commit = '4ef0705'
local_commit = '4ef0705'
versionsuffix = '-Python-%(local_pyver)s'
homepage = 'https://colibread.inria.fr/software/commet/'
@ -13,7 +13,7 @@ description = """ COMMET ("COmpare Multiple METagenomes") provides a global simi
toolchain = {'name': 'foss', 'version': '2016a'}
source_urls = ['https://github.com/pierrepeterlongo/commet/archive']
sources = ['%s.tar.gz' % commit]
sources = ['%s.tar.gz' % local_commit]
checksums = ['19cba09ca7a92eaed75ed6af820d9451']

View File

@ -3,7 +3,7 @@ easyblock = "PythonPackage"
name = 'Cython'
version = '0.16'
homepage = 'https://pypi.python.org/pypi/Cython/'
homepage = 'https://pypi.local_python.org/pypi/Cython/'
description = """The Cython language makes writing C extensions for the Python language as easy as Python itself.
Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations."""
@ -12,17 +12,17 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'}
source_urls = [PYPI_SOURCE]
sources = [SOURCE_TAR_GZ]
python = 'Python'
pythonver = '2.7.3'
pythonshortver = '.'.join(pythonver.split('.')[0:2])
pylibdir = 'lib/python%s/site-packages' % pythonshortver
versionsuffix = '-%s-%s' % (python, pythonver)
local_python = 'Python'
local_pythonver = '2.7.3'
local_pythonshortver = '.'.join(local_pythonver.split('.')[0:2])
local_pylibdir = 'lib/local_python%s/site-packages' % local_pythonshortver
versionsuffix = '-%s-%s' % (local_python, local_pythonver)
dependencies = [(python, pythonver)]
dependencies = [(local_python, local_pythonver)]
sanity_check_paths = {
'files': ['bin/cygdb', 'bin/cython', '%s/%%(namelower)s.py' % pylibdir],
'dirs': ['%s/%%(name)s' % pylibdir],
'files': ['bin/cygdb', 'bin/cython', '%s/%%(namelower)s.py' % local_pylibdir],
'dirs': ['%s/%%(name)s' % local_pylibdir],
}
moduleclass = 'lang'

View File

@ -3,7 +3,7 @@ easyblock = "PythonPackage"
name = 'Cython'
version = '0.16'
homepage = 'https://pypi.python.org/pypi/Cython/'
homepage = 'https://pypi.local_python.org/pypi/Cython/'
description = """The Cython language makes writing C extensions for the Python language as easy as Python itself.
Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations."""
@ -12,17 +12,17 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'}
source_urls = [PYPI_SOURCE]
sources = [SOURCE_TAR_GZ]
python = 'Python'
pythonver = '2.7.3'
pythonshortver = '.'.join(pythonver.split('.')[0:2])
pylibdir = 'lib/python%s/site-packages' % pythonshortver
versionsuffix = '-%s-%s' % (python, pythonver)
local_python = 'Python'
local_pythonver = '2.7.3'
local_pythonshortver = '.'.join(local_pythonver.split('.')[0:2])
local_pylibdir = 'lib/local_python%s/site-packages' % local_pythonshortver
versionsuffix = '-%s-%s' % (local_python, local_pythonver)
dependencies = [(python, pythonver)]
dependencies = [(local_python, local_pythonver)]
sanity_check_paths = {
'files': ['bin/cygdb', 'bin/cython', '%s/%%(namelower)s.py' % pylibdir],
'dirs': ['%s/%%(name)s' % pylibdir],
'files': ['bin/cygdb', 'bin/cython', '%s/%%(namelower)s.py' % local_pylibdir],
'dirs': ['%s/%%(name)s' % local_pylibdir],
}
moduleclass = 'lang'

View File

@ -3,7 +3,7 @@ easyblock = "PythonPackage"
name = 'Cython'
version = '0.19.1'
homepage = 'https://pypi.python.org/pypi/Cython/'
homepage = 'https://pypi.local_python.org/pypi/Cython/'
description = """The Cython language makes writing C extensions for the Python language as easy as Python itself.
Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations."""
@ -12,17 +12,17 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'}
source_urls = [PYPI_SOURCE]
sources = [SOURCE_TAR_GZ]
python = 'Python'
pythonver = '2.7.3'
pythonshortver = '.'.join(pythonver.split('.')[0:2])
pylibdir = 'lib/python%s/site-packages' % pythonshortver
versionsuffix = '-%s-%s' % (python, pythonver)
local_python = 'Python'
local_pythonver = '2.7.3'
local_pythonshortver = '.'.join(local_pythonver.split('.')[0:2])
local_pylibdir = 'lib/local_python%s/site-packages' % local_pythonshortver
versionsuffix = '-%s-%s' % (local_python, local_pythonver)
dependencies = [(python, pythonver)]
dependencies = [(local_python, local_pythonver)]
sanity_check_paths = {
'files': ['bin/cygdb', 'bin/cython', '%s/%%(namelower)s.py' % pylibdir],
'dirs': ['%s/%%(name)s' % pylibdir],
'files': ['bin/cygdb', 'bin/cython', '%s/%%(namelower)s.py' % local_pylibdir],
'dirs': ['%s/%%(name)s' % local_pylibdir],
}
moduleclass = 'lang'

View File

@ -3,7 +3,7 @@ easyblock = "PythonPackage"
name = 'Cython'
version = '0.19.1'
homepage = 'https://pypi.python.org/pypi/Cython/'
homepage = 'https://pypi.local_python.org/pypi/Cython/'
description = """The Cython language makes writing C extensions for the Python language as easy as Python itself.
Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations."""
@ -12,17 +12,17 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'}
source_urls = [PYPI_SOURCE]
sources = [SOURCE_TAR_GZ]
python = 'Python'
pythonver = '2.7.3'
pythonshortver = '.'.join(pythonver.split('.')[0:2])
pylibdir = 'lib/python%s/site-packages' % pythonshortver
versionsuffix = '-%s-%s' % (python, pythonver)
local_python = 'Python'
local_pythonver = '2.7.3'
local_pythonshortver = '.'.join(local_pythonver.split('.')[0:2])
local_pylibdir = 'lib/local_python%s/site-packages' % local_pythonshortver
versionsuffix = '-%s-%s' % (local_python, local_pythonver)
dependencies = [(python, pythonver)]
dependencies = [(local_python, local_pythonver)]
sanity_check_paths = {
'files': ['bin/cygdb', 'bin/cython', '%s/%%(namelower)s.py' % pylibdir],
'dirs': ['%s/%%(name)s' % pylibdir],
'files': ['bin/cygdb', 'bin/cython', '%s/%%(namelower)s.py' % local_pylibdir],
'dirs': ['%s/%%(name)s' % local_pylibdir],
}
moduleclass = 'lang'

View File

@ -3,7 +3,7 @@ easyblock = "PythonPackage"
name = 'Cython'
version = '0.19.2'
homepage = 'https://pypi.python.org/pypi/Cython/'
homepage = 'https://pypi.local_python.org/pypi/Cython/'
description = """The Cython language makes writing C extensions for the Python language as easy as Python itself.
Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations."""
@ -12,17 +12,17 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'}
source_urls = [PYPI_SOURCE]
sources = [SOURCE_TAR_GZ]
python = 'Python'
pythonver = '2.7.6'
pythonshortver = '.'.join(pythonver.split('.')[0:2])
pylibdir = 'lib/python%s/site-packages' % pythonshortver
versionsuffix = '-%s-%s' % (python, pythonver)
local_python = 'Python'
local_pythonver = '2.7.6'
local_pythonshortver = '.'.join(local_pythonver.split('.')[0:2])
local_pylibdir = 'lib/local_python%s/site-packages' % local_pythonshortver
versionsuffix = '-%s-%s' % (local_python, local_pythonver)
dependencies = [(python, pythonver)]
dependencies = [(local_python, local_pythonver)]
sanity_check_paths = {
'files': ['bin/cygdb', 'bin/cython', '%s/%%(namelower)s.py' % pylibdir],
'dirs': ['%s/%%(name)s' % pylibdir],
'files': ['bin/cygdb', 'bin/cython', '%s/%%(namelower)s.py' % local_pylibdir],
'dirs': ['%s/%%(name)s' % local_pylibdir],
}
moduleclass = 'lang'

View File

@ -3,7 +3,7 @@ easyblock = "PythonPackage"
name = 'Cython'
version = '0.22'
homepage = 'https://pypi.python.org/pypi/Cython/'
homepage = 'https://pypi.local_python.org/pypi/Cython/'
description = """The Cython language makes writing C extensions for the Python language as easy as Python itself.
Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations."""
@ -12,24 +12,24 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'}
source_urls = [PYPI_SOURCE]
sources = [SOURCELOWER_TAR_GZ]
python = 'Python'
pythonver = '2.7.3'
versionsuffix = '-%s-%s' % (python, pythonver)
local_pyshortver = '.'.join(pythonver.split('.')[0:2])
cythonlibdir = 'lib/python' + local_pyshortver + \
local_python = 'Python'
local_pythonver = '2.7.3'
versionsuffix = '-%s-%s' % (local_python, local_pythonver)
local_pyshortver = '.'.join(local_pythonver.split('.')[0:2])
local_cythonlibdir = 'lib/local_python' + local_pyshortver + \
'/site-packages/Cython-%(version)s-py' + local_pyshortver + '-linux-x86_64.egg'
dependencies = [(python, pythonver)]
dependencies = [(local_python, local_pythonver)]
sanity_check_paths = {
'files': [
'bin/cygdb',
'bin/cython',
'%s/%%(namelower)s.py' %
cythonlibdir],
local_cythonlibdir],
'dirs': [
'%s/%%(name)s' %
cythonlibdir],
local_cythonlibdir],
}
moduleclass = 'lang'

View File

@ -15,15 +15,15 @@ sources = [SOURCE_TAR_GZ]
dependencies = [('Python', '2.7.10')]
cythonlibdir = 'lib/python%(local_pyshortver)s/site-packages/Cython-%(version)s-py%(local_pyshortver)s-linux-x86_64.egg'
local_cythonlibdir = 'lib/python%(local_pyshortver)s/site-packages/Cython-%(version)s-py%(local_pyshortver)s-linux-x86_64.egg'
sanity_check_paths = {
'files': [
'bin/cygdb',
'bin/cython',
'%s/%%(namelower)s.py' %
cythonlibdir],
local_cythonlibdir],
'dirs': [
cythonlibdir +
local_cythonlibdir +
'/%(name)s']}
moduleclass = 'lang'

View File

@ -15,15 +15,15 @@ sources = [SOURCE_TAR_GZ]
dependencies = [('Python', '2.7.11')]
cythonlibdir = 'lib/python%(local_pyshortver)s/site-packages/Cython-%(version)s-py%(local_pyshortver)s-linux-x86_64.egg'
local_cythonlibdir = 'lib/python%(local_pyshortver)s/site-packages/Cython-%(version)s-py%(local_pyshortver)s-linux-x86_64.egg'
sanity_check_paths = {
'files': [
'bin/cygdb',
'bin/cython',
'%s/%%(namelower)s.py' %
cythonlibdir],
local_cythonlibdir],
'dirs': [
cythonlibdir +
local_cythonlibdir +
'/%(name)s']}
moduleclass = 'lang'

View File

@ -15,19 +15,19 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'}
source_urls = ['http://cutadapt.googlecode.com/files/']
sources = [SOURCELOWER_TAR_GZ]
python = 'Python'
local_python = 'Python'
local_pyver = '2.7.10'
local_pyshortver = '.'.join(local_pyver.split('.')[:2])
versionsuffix = "-%s-%s" % (python, local_pyver)
versionsuffix = "-%s-%s" % (local_python, local_pyver)
dependencies = [
(python, local_pyver),
(local_python, local_pyver),
]
sanity_check_paths = {
'files': [
'lib/python%s/site-packages/cutadapt/_align.%s' %
'lib/local_python%s/site-packages/cutadapt/_align.%s' %
(local_pyshortver, SHLIB_EXT)], 'dirs': [], }
moduleclass = 'bio'

View File

@ -20,7 +20,7 @@ dependencies = [
('LASTZ', '1.02.00'),
]
binaries = [
local_binaries = [
'assemble',
'assemble1',
'assemble_illumina',
@ -42,7 +42,7 @@ binaries = [
]
sanity_check_paths = {
'files': ['bin/%s' % binfile for binfile in binaries],
'files': ['bin/%s' % binfile for binfile in local_binaries],
'dirs': ['bin']
}

View File

@ -37,13 +37,13 @@ sources = [
'http://ftp.mcs.anl.gov/pub/darshan/releases/darshan-%s.tar.gz' %
version]
subpath = 'darshan-runtime'
preconfigopts = 'cd %s;' % subpath
local_subpath = 'darshan-runtime'
preconfigopts = 'cd %s;' % local_subpath
configopts = '--with-mem-align=8 --with-log-path-by-env=DARSHAN_LOG_PATH --with-jobid-env=SLURM_JOBID CC=mpicc'
prebuildopts = 'cd %s;' % subpath
prebuildopts = 'cd %s;' % local_subpath
preinstallopts = 'cd %s;' % subpath
preinstallopts = 'cd %s;' % local_subpath
sanity_check_paths = {
'files': ["lib/libdarshan.so"],

View File

@ -37,13 +37,13 @@ sources = [
'http://ftp.mcs.anl.gov/pub/darshan/releases/darshan-%s.tar.gz' %
version]
subpath = 'darshan-runtime'
preconfigopts = 'cd %s;' % subpath
local_subpath = 'darshan-runtime'
preconfigopts = 'cd %s;' % local_subpath
configopts = '--with-mem-align=8 --with-log-path-by-env=DARSHAN_LOG_PATH --with-jobid-env=SLURM_JOBID CC=mpicc'
prebuildopts = 'cd %s;' % subpath
prebuildopts = 'cd %s;' % local_subpath
preinstallopts = 'cd %s;' % subpath
preinstallopts = 'cd %s;' % local_subpath
sanity_check_paths = {
'files': ["lib/libdarshan.so"],

View File

@ -36,13 +36,13 @@ sources = [
'http://ftp.mcs.anl.gov/pub/darshan/releases/darshan-%s.tar.gz' %
version]
subpath = 'darshan-util'
local_subpath = 'darshan-util'
preconfigopts = 'cd %s;' % subpath
preconfigopts = 'cd %s;' % local_subpath
prebuildopts = 'cd %s;' % subpath
prebuildopts = 'cd %s;' % local_subpath
preinstallopts = 'cd %s;' % subpath
preinstallopts = 'cd %s;' % local_subpath
sanity_check_paths = {
'files': ["bin/darshan-job-summary.pl"],

View File

@ -36,13 +36,13 @@ sources = [
'http://ftp.mcs.anl.gov/pub/darshan/releases/darshan-%s.tar.gz' %
version]
subpath = 'darshan-util'
local_subpath = 'darshan-util'
preconfigopts = 'cd %s;' % subpath
preconfigopts = 'cd %s;' % local_subpath
prebuildopts = 'cd %s;' % subpath
prebuildopts = 'cd %s;' % local_subpath
preinstallopts = 'cd %s;' % subpath
preinstallopts = 'cd %s;' % local_subpath
sanity_check_paths = {
'files': ["bin/darshan-job-summary.pl"],

View File

@ -28,12 +28,12 @@ builddependencies = [
preconfigopts = 'autoreconf && '
common_configopts = 'FCFLAGS="-I$EBROOTIMKL/mkl/include/intel64/lp64 -nofor_main $FCFLAGS" '
common_configopts += 'LIBS="$LIBSCALAPACK" '
local_common_configopts = 'FCFLAGS="-I$EBROOTIMKL/mkl/include/intel64/lp64 -nofor_main $FCFLAGS" '
local_common_configopts += 'LIBS="$LIBSCALAPACK" '
configopts = [
common_configopts + '--enable-openmp ',
common_configopts, # Default version last, so we can get the normal config.h/config-f90.h installed afterwards.
local_common_configopts + '--enable-openmp ',
local_common_configopts, # Default version last, so we can get the normal config.h/config-f90.h installed afterwards.
]
buildopts = ' V=1 '

View File

@ -37,12 +37,12 @@ builddependencies = [
preconfigopts = 'autoreconf && '
common_configopts = 'FCFLAGS="-I$EBROOTIMKL/mkl/include/intel64/lp64 $FCFLAGS" '
common_configopts += 'LIBS="$LIBSCALAPACK" '
local_common_configopts = 'FCFLAGS="-I$EBROOTIMKL/mkl/include/intel64/lp64 $FCFLAGS" '
local_common_configopts += 'LIBS="$LIBSCALAPACK" '
configopts = [
common_configopts + '--enable-openmp ',
common_configopts, # Default version last, so we can get the normal config.h/config-f90.h installed afterwards.
local_common_configopts + '--enable-openmp ',
local_common_configopts, # Default version last, so we can get the normal config.h/config-f90.h installed afterwards.
]
# Autotools 20180311 makes configure create some files that causes problem

View File

@ -27,12 +27,12 @@ builddependencies = [
preconfigopts = 'autoreconf && '
common_configopts = 'FCFLAGS="-I$EBROOTIMKL/mkl/include/intel64/lp64 $FCFLAGS" '
common_configopts += 'LIBS="$LIBSCALAPACK" '
local_common_configopts = 'FCFLAGS="-I$EBROOTIMKL/mkl/include/intel64/lp64 $FCFLAGS" '
local_common_configopts += 'LIBS="$LIBSCALAPACK" '
configopts = [
common_configopts + '--enable-openmp ',
common_configopts, # Default version last, so we can get the normal config.h/config-f90.h installed afterwards.
local_common_configopts + '--enable-openmp ',
local_common_configopts, # Default version last, so we can get the normal config.h/config-f90.h installed afterwards.
]
buildopts = ' V=1 '

View File

@ -27,12 +27,12 @@ builddependencies = [
preconfigopts = 'autoreconf && '
common_configopts = 'FCFLAGS="-I$EBROOTIMKL/mkl/include/intel64/lp64 $FCFLAGS" '
common_configopts += 'LIBS="$LIBSCALAPACK" '
local_common_configopts = 'FCFLAGS="-I$EBROOTIMKL/mkl/include/intel64/lp64 $FCFLAGS" '
local_common_configopts += 'LIBS="$LIBSCALAPACK" '
configopts = [
common_configopts + '--enable-openmp ',
common_configopts, # Default version last, so we can get the normal config.h/config-f90.h installed afterwards.
local_common_configopts + '--enable-openmp ',
local_common_configopts, # Default version last, so we can get the normal config.h/config-f90.h installed afterwards.
]
buildopts = ' V=1 '

View File

@ -14,13 +14,13 @@ toolchainopts = {'optarch': True, 'pic': True}
sources = [SOURCELOWER_TAR_GZ]
source_urls = [homepage]
common_configopts = "--enable-threads --enable-openmp --with-pic"
local_common_configopts = "--enable-threads --enable-openmp --with-pic"
# no quad precision, requires GCC v4.6 or higher
configopts = [
common_configopts + " --enable-single --enable-sse2 --enable-mpi",
common_configopts + " --enable-long-double --enable-mpi",
common_configopts + " --enable-sse2 --enable-mpi", # default as last
local_common_configopts + " --enable-single --enable-sse2 --enable-mpi",
local_common_configopts + " --enable-long-double --enable-mpi",
local_common_configopts + " --enable-sse2 --enable-mpi", # default as last
]
sanity_check_paths = {

View File

@ -13,15 +13,15 @@ toolchainopts = {'pic': True}
sources = [SOURCELOWER_TAR_GZ]
source_urls = [homepage]
common_configopts = "--enable-threads --enable-openmp --with-pic"
local_common_configopts = "--enable-threads --enable-openmp --with-pic"
# no quad precision, requires GCC v4.6 or higher
# see also
# http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html
configopts = [
common_configopts + " --enable-single --enable-sse2 --enable-mpi",
common_configopts + " --enable-long-double --enable-mpi",
common_configopts + " --enable-sse2 --enable-mpi", # default as last
local_common_configopts + " --enable-single --enable-sse2 --enable-mpi",
local_common_configopts + " --enable-long-double --enable-mpi",
local_common_configopts + " --enable-sse2 --enable-mpi", # default as last
]
sanity_check_paths = {

View File

@ -13,15 +13,15 @@ toolchainopts = {'pic': True}
sources = [SOURCELOWER_TAR_GZ]
source_urls = [homepage]
common_configopts = "--enable-threads --enable-openmp --with-pic"
local_common_configopts = "--enable-threads --enable-openmp --with-pic"
# no quad precision, requires GCC v4.6 or higher
# see also
# http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html
configopts = [
common_configopts + " --enable-single --enable-sse2 --enable-mpi",
common_configopts + " --enable-long-double --enable-mpi",
common_configopts + " --enable-sse2 --enable-mpi", # default as last
local_common_configopts + " --enable-single --enable-sse2 --enable-mpi",
local_common_configopts + " --enable-long-double --enable-mpi",
local_common_configopts + " --enable-sse2 --enable-mpi", # default as last
]
sanity_check_paths = {

View File

@ -13,15 +13,15 @@ toolchainopts = {'pic': True}
sources = [SOURCELOWER_TAR_GZ]
source_urls = [homepage]
common_configopts = "--enable-threads --enable-openmp --with-pic"
local_common_configopts = "--enable-threads --enable-openmp --with-pic"
# no quad precision, requires GCC v4.6 or higher
# see also
# http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html
configopts = [
common_configopts + " --enable-single --enable-sse2 --enable-mpi",
common_configopts + " --enable-long-double --enable-mpi",
common_configopts + " --enable-sse2 --enable-mpi --enable-avx2", # default as last
local_common_configopts + " --enable-single --enable-sse2 --enable-mpi",
local_common_configopts + " --enable-long-double --enable-mpi",
local_common_configopts + " --enable-sse2 --enable-mpi --enable-avx2", # default as last
]
sanity_check_paths = {

View File

@ -13,15 +13,15 @@ toolchainopts = {'pic': True}
sources = [SOURCELOWER_TAR_GZ]
source_urls = [homepage]
common_configopts = "--enable-threads --enable-openmp --with-pic"
local_common_configopts = "--enable-threads --enable-openmp --with-pic"
# no quad precision, requires GCC v4.6 or higher
# see also
# http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html
configopts = [
common_configopts + " --enable-single --enable-sse2 --enable-mpi",
common_configopts + " --enable-long-double --enable-mpi",
common_configopts + " --enable-sse2 --enable-mpi --enable-avx2", # default as last
local_common_configopts + " --enable-single --enable-sse2 --enable-mpi",
local_common_configopts + " --enable-long-double --enable-mpi",
local_common_configopts + " --enable-sse2 --enable-mpi --enable-avx2", # default as last
]
sanity_check_paths = {

View File

@ -14,13 +14,13 @@ source_urls = [homepage]
sources = ['fftw-%(version)s-pl1.tar.gz']
checksums = ['682a0e78d6966ca37c7446d4ab4cc2a1']
common_configopts = "--enable-threads --enable-openmp --with-pic"
local_common_configopts = "--enable-threads --enable-openmp --with-pic"
configopts = [
common_configopts + " --enable-single --enable-sse2 --enable-mpi",
common_configopts + " --enable-long-double --enable-mpi",
common_configopts + " --enable-quad-precision",
common_configopts + " --enable-sse2 --enable-mpi", # default as last
local_common_configopts + " --enable-single --enable-sse2 --enable-mpi",
local_common_configopts + " --enable-long-double --enable-mpi",
local_common_configopts + " --enable-quad-precision",
local_common_configopts + " --enable-sse2 --enable-mpi", # default as last
]
sanity_check_paths = {

View File

@ -13,14 +13,14 @@ toolchain = {'name': 'intel', 'version': '2015b'}
source_urls = ['https://bitbucket.org/fenics-project/fiat/downloads']
sources = [SOURCELOWER_TAR_GZ]
python = "Python"
pythonversion = '2.7.9'
pythonshortversion = ".".join(pythonversion.split('.')[:-1])
local_python = "Python"
local_pythonversion = '2.7.9'
local_pythonshortversion = ".".join(local_pythonversion.split('.')[:-1])
versionsuffix = "-%s-%s" % (python, pythonversion)
versionsuffix = "-%s-%s" % (local_python, local_pythonversion)
dependencies = [
(python, pythonversion),
(local_python, local_pythonversion),
('ScientificPython', '2.9.4', versionsuffix),
('sympy', '0.7.6', versionsuffix),
]
@ -29,7 +29,7 @@ options = {'modulename': name}
sanity_check_paths = {
'files': [''],
#'dirs': ['lib/python%s/site-packages/FIAT' % pythonshortversion],
#'dirs': ['lib/local_python%s/site-packages/FIAT' % local_pythonshortversion],
'dirs': [''],
}

View File

@ -13,14 +13,14 @@ toolchain = {'name': 'intel', 'version': '2016.01'}
source_urls = ['https://bitbucket.org/fenics-project/fiat/downloads']
sources = [SOURCELOWER_TAR_GZ]
python = "Python"
pythonversion = '2.7.9'
pythonshortversion = ".".join(pythonversion.split('.')[:-1])
local_python = "Python"
local_pythonversion = '2.7.9'
local_pythonshortversion = ".".join(local_pythonversion.split('.')[:-1])
versionsuffix = "-%s-%s" % (python, pythonversion)
versionsuffix = "-%s-%s" % (local_python, local_pythonversion)
dependencies = [
(python, pythonversion),
(local_python, local_pythonversion),
('ScientificPython', '2.9.4', versionsuffix),
('sympy', '0.7.6', versionsuffix),
]

View File

@ -15,8 +15,8 @@ local_tcver = '%s-local_binutils-%s' % (local_gccver, local_local_binutilsver)
local_blaslib = 'OpenBLAS'
local_blasver = '0.2.14'
blas = '%s-%s' % (local_blaslib, local_blasver)
blaslocal_suff = '-LAPACK-3.5.0'
local_blas = '%s-%s' % (local_blaslib, local_blasver)
local_blaslocal_suff = '-LAPACK-3.5.0'
# toolchain used to build foss dependencies
local_comp_mpi_tc_name = 'gompi'
@ -31,9 +31,9 @@ dependencies = [
('GCC', local_gccver, '-local_binutils-%s' % local_local_binutilsver),
('binutils', local_local_binutilsver, '', ('GCC', local_tcver)),
('OpenMPI', '1.8.8', '', ('GNU', '%s-%s' % (local_gccver, local_local_binutilsver))),
(local_blaslib, local_blasver, blaslocal_suff, ('GNU', '%s-%s' % (local_gccver, local_local_binutilsver))),
(local_blaslib, local_blasver, local_blaslocal_suff, ('GNU', '%s-%s' % (local_gccver, local_local_binutilsver))),
('FFTW', '3.3.4', '', local_comp_mpi_tc),
('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blaslocal_suff), local_comp_mpi_tc),
('ScaLAPACK', '2.0.2', '-%s%s' % (local_blas, local_blaslocal_suff), local_comp_mpi_tc),
]
moduleclass = 'toolchain'

View File

@ -15,8 +15,8 @@ local_comp = (local_local_comp_name, local_local_comp_version)
local_blaslib = 'OpenBLAS'
local_blasver = '0.2.14'
blas = '%s-%s' % (local_blaslib, local_blasver)
blas_local_suff = '-LAPACK-3.5.0'
local_blas = '%s-%s' % (local_blaslib, local_blasver)
local_blas_local_suff = '-LAPACK-3.5.0'
# toolchain used to build foss dependencies
local_comp_mpi_tc_name = 'gompi'
@ -29,9 +29,9 @@ local_comp_mpi_tc = (local_comp_mpi_tc_name, local_comp_mpi_tc_ver)
dependencies = [
local_comp,
('OpenMPI', '1.8.6', '', local_comp), # part of gompi-2015e
(local_blaslib, local_blasver, blas_local_suff, local_comp_mpi_tc),
(local_blaslib, local_blasver, local_blas_local_suff, local_comp_mpi_tc),
('FFTW', '3.3.4', '', local_comp_mpi_tc),
('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blas_local_suff), local_comp_mpi_tc)
('ScaLAPACK', '2.0.2', '-%s%s' % (local_blas, local_blas_local_suff), local_comp_mpi_tc)
]
moduleclass = 'toolchain'

View File

@ -15,8 +15,8 @@ local_tcver = '%s-local_binutils-%s' % (local_gccver, local_local_binutilsver)
local_blaslib = 'OpenBLAS'
local_blasver = '0.2.14'
blas = '%s-%s' % (local_blaslib, local_blasver)
blaslocal_suff = '-LAPACK-3.5.0'
local_blas = '%s-%s' % (local_blaslib, local_blasver)
local_blaslocal_suff = '-LAPACK-3.5.0'
# toolchain used to build foss dependencies
local_comp_mpi_tc_name = 'gompi'
@ -31,9 +31,9 @@ dependencies = [
('GCC', local_gccver, '-local_binutils-%s' % local_local_binutilsver),
('binutils', local_local_binutilsver, '', ('GCC', local_tcver)),
('OpenMPI', '1.8.8', '', ('GNU', '%s-%s' % (local_gccver, local_local_binutilsver))),
(local_blaslib, local_blasver, blaslocal_suff, ('GNU', '%s-%s' % (local_gccver, local_local_binutilsver))),
(local_blaslib, local_blasver, local_blaslocal_suff, ('GNU', '%s-%s' % (local_gccver, local_local_binutilsver))),
('FFTW', '3.3.4', '', local_comp_mpi_tc),
('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blaslocal_suff), local_comp_mpi_tc),
('ScaLAPACK', '2.0.2', '-%s%s' % (local_blas, local_blaslocal_suff), local_comp_mpi_tc),
]
moduleclass = 'toolchain'

View File

@ -15,8 +15,8 @@ local_gccver = '4.9.3-2.25'
local_blaslib = 'OpenBLAS'
local_blasver = '0.2.15'
blas = '%s-%s' % (local_blaslib, local_blasver)
blaslocal_suff = '-LAPACK-3.6.0'
local_blas = '%s-%s' % (local_blaslib, local_blasver)
local_blaslocal_suff = '-LAPACK-3.6.0'
# toolchain used to build foss dependencies
local_comp_mpi_tc_name = 'gompi'
@ -29,9 +29,9 @@ local_comp_mpi_tc = (local_comp_mpi_tc_name, version)
dependencies = [
('GCC', local_gccver),
('OpenMPI', '1.10.7', '', ('GCC', local_gccver)),
(local_blaslib, local_blasver, blaslocal_suff, ('GCC', local_gccver)),
(local_blaslib, local_blasver, local_blaslocal_suff, ('GCC', local_gccver)),
('FFTW', '3.3.5', '', local_comp_mpi_tc),
('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blaslocal_suff), local_comp_mpi_tc),
('ScaLAPACK', '2.0.2', '-%s%s' % (local_blas, local_blaslocal_suff), local_comp_mpi_tc),
]
moduleclass = 'toolchain'

View File

@ -15,7 +15,7 @@ local_gccver = '6.3.0-2.27'
local_blaslib = 'OpenBLAS'
local_blasver = '0.2.20'
blas = '%s-%s' % (local_blaslib, local_blasver)
local_blas = '%s-%s' % (local_blaslib, local_blasver)
# toolchain used to build foss dependencies
local_comp_mpi_tc_name = 'gompi'
@ -29,7 +29,7 @@ dependencies = [
('OpenMPI', '2.1.5', '', ('GCC', local_gccver)),
(local_blaslib, local_blasver, '', ('GCC', local_gccver)),
('FFTW', '3.3.6', '', local_comp_mpi_tc),
('ScaLAPACK', '2.0.2', '-%s' % blas, local_comp_mpi_tc),
('ScaLAPACK', '2.0.2', '-%s' % local_blas, local_comp_mpi_tc),
]
moduleclass = 'toolchain'

View File

@ -15,7 +15,7 @@ local_gccver = '6.3.0-2.27'
local_blaslib = 'OpenBLAS'
local_blasver = '0.2.20'
blas = '%s-%s' % (local_blaslib, local_blasver)
local_blas = '%s-%s' % (local_blaslib, local_blasver)
# toolchain used to build foss dependencies
local_comp_mpi_tc_name = 'gompi'
@ -29,7 +29,7 @@ dependencies = [
('OpenMPI', '3.1.4', '', ('GCC', local_gccver)),
(local_blaslib, local_blasver, '', ('GCC', local_gccver)),
('FFTW', '3.3.7', '', local_comp_mpi_tc),
('ScaLAPACK', '2.0.2', '-%s' % blas, local_comp_mpi_tc),
('ScaLAPACK', '2.0.2', '-%s' % local_blas, local_comp_mpi_tc),
]
moduleclass = 'toolchain'

View File

@ -16,7 +16,7 @@ local_gccver = '8.3.0-2.32'
local_blaslib = 'OpenBLAS'
local_blasver = '0.2.20'
blas = '%s-%s' % (local_blaslib, local_blasver)
local_blas = '%s-%s' % (local_blaslib, local_blasver)
# toolchain used to build foss dependencies
local_comp_mpi_tc_name = 'gompi'
@ -30,7 +30,7 @@ dependencies = [
('OpenMPI', '4.0.4', '-CUDA', ('GCC', local_gccver)),
(local_blaslib, local_blasver, '', ('GCC', local_gccver)),
('FFTW', '3.3.8'),
('ScaLAPACK', '2.0.2', '-%s' % blas, local_comp_mpi_tc),
('ScaLAPACK', '2.0.2', '-%s' % local_blas, local_comp_mpi_tc),
]
moduleclass = 'toolchain'

View File

@ -11,8 +11,8 @@ toolchain = {'name': 'foss', 'version': '2016a'}
sources = [SOURCE_TAR_GZ]
source_urls = ['http://prdownloads.sourceforge.net/%(name)s']
mesa_ver = '11.2.1'
versionsuffix = '-Mesa-%s' % mesa_ver
local_mesa_ver = '11.2.1'
versionsuffix = '-Mesa-%s' % local_mesa_ver
builddependencies = [('CMake', '3.4.3')]
@ -21,7 +21,7 @@ dependencies = [
('libXext', '1.3.3'),
('libXrandr', '1.5.0'),
('libXi', '1.7.6'),
('Mesa', mesa_ver),
('Mesa', local_mesa_ver),
]
configopts = ' -DX11_X11_LIB="$EBROOTLIBX11/lib/libX11.so" '

View File

@ -11,8 +11,8 @@ toolchain = {'name': 'intel', 'version': '2016a'}
sources = [SOURCE_TAR_GZ]
source_urls = ['http://prdownloads.sourceforge.net/%(name)s']
mesa_ver = '11.2.1'
versionsuffix = '-Mesa-%s' % mesa_ver
local_mesa_ver = '11.2.1'
versionsuffix = '-Mesa-%s' % local_mesa_ver
builddependencies = [('CMake', '3.4.3')]
@ -21,7 +21,7 @@ dependencies = [
('libXext', '1.3.3'),
('libXrandr', '1.5.0'),
('libXi', '1.7.6'),
('Mesa', mesa_ver),
('Mesa', local_mesa_ver),
]
configopts = ' -DX11_X11_LIB="$EBROOTLIBX11/lib/libX11.so" '

View File

@ -12,14 +12,14 @@ description = """GMT is an open source collection of about 80 command-line tools
toolchain = {'name': 'foss', 'version': '2015g'}
gshhg_ver = '2.3.4'
dcw_ver = '1.1.2'
local_gshhg_ver = '2.3.4'
local_dcw_ver = '1.1.2'
sources = [
'gmt-%(version)s-src.tar.gz',
# coastlines, rivers, and political boundaries
'gshhg-gmt-%s.tar.gz' % gshhg_ver,
'gshhg-gmt-%s.tar.gz' % local_gshhg_ver,
# country polygons
'dcw-gmt-%s.tar.gz' % dcw_ver,
'dcw-gmt-%s.tar.gz' % local_dcw_ver,
]
# 'http://gmt.soest.hawaii.edu/files/download?name=' needs flash enabled browser
@ -46,8 +46,8 @@ dependencies = [
preconfigopts = "export CMAKE_LIBRARY_PATH=$LD_LIBRARY_PATH && "
configopts = '-DCOPY_GSHHG=TRUE -DGSHHG_ROOT=%%(builddir)s/gshhg-gmt-%s ' % gshhg_ver
configopts += '-DCOPY_DCW=TRUE -DDCW_ROOT=%%(builddir)s/dcw-gmt-%s ' % dcw_ver
configopts = '-DCOPY_GSHHG=TRUE -DGSHHG_ROOT=%%(builddir)s/gshhg-gmt-%s ' % local_gshhg_ver
configopts += '-DCOPY_DCW=TRUE -DDCW_ROOT=%%(builddir)s/dcw-gmt-%s ' % local_dcw_ver
configopts += '-DHAVE_NETCDF4=1 '
separate_build_dir = True

View File

@ -15,8 +15,8 @@ toolchain = {'name': 'intel', 'version': '2014b'}
source_urls = ['http://www.graphviz.org/pub/graphviz/stable/SOURCES/']
sources = [SOURCELOWER_TAR_GZ]
python = "Python"
pythonversion = '2.7.8'
local_python = "Python"
local_pythonversion = '2.7.8'
dependencies = [
('cairo', '1.12.18'),
@ -30,9 +30,9 @@ dependencies = [
('libpng', '1.6.12'),
('Pango', '1.36.7'),
('Perl', '5.20.0'),
(python, pythonversion),
(local_python, local_pythonversion),
('Qt', '4.8.6'),
('SWIG', '3.0.2', '-%s-%s' % (python, pythonversion)),
('SWIG', '3.0.2', '-%s-%s' % (local_python, local_pythonversion)),
('Tcl', '8.6.2'),
('zlib', '1.2.8'),
]
@ -65,7 +65,7 @@ sanity_check_paths = {
'dirs': ['include']}
modextrapaths = {
'PYTHONPATH': 'lib/graphviz/python',
'PYTHONPATH': 'lib/graphviz/local_python',
'CLASSPATH': 'lib/graphviz/java/org/graphviz',
'LD_LIBRARY_PATH': 'lib/graphviz/java',
'TCLLIBPATH': 'lib/graphviz/tcl',

View File

@ -15,11 +15,11 @@ toolchain = {'name': 'intel', 'version': '2015a'}
source_urls = ['http://www.graphviz.org/pub/graphviz/stable/SOURCES/']
sources = [SOURCELOWER_TAR_GZ]
python = 'Python'
local_python = 'Python'
local_pyver = '2.7.10'
versionsuffix = '-%s-%s' % (python, local_pyver)
versionsuffix = '-%s-%s' % (local_python, local_pyver)
gliblocal_suff = '-GLib-2.44.1'
local_gliblocal_suff = '-GLib-2.44.1'
dependencies = [
('cairo', '1.14.2'),
@ -27,13 +27,13 @@ dependencies = [
('freetype', '2.6'),
('fontconfig', '2.11.94'),
('Ghostscript', '9.16'),
('GTS', '0.7.6', gliblocal_suff),
('GTS', '0.7.6', local_gliblocal_suff),
('Java', '1.7.0_80', '', True),
('libpng', '1.6.17'),
('Pango', '1.37.2'),
('Perl', '5.20.0'),
(python, local_pyver),
('Qt', '4.8.6', gliblocal_suff),
(local_python, local_pyver),
('Qt', '4.8.6', local_gliblocal_suff),
('SWIG', '3.0.7', versionsuffix),
('Tcl', '8.6.4'),
('zlib', '1.2.8'),
@ -67,7 +67,7 @@ sanity_check_paths = {
'dirs': ['include']}
modextrapaths = {
'PYTHONPATH': 'lib/graphviz/python',
'PYTHONPATH': 'lib/graphviz/local_python',
'CLASSPATH': 'lib/graphviz/java/org/graphviz',
'LD_LIBRARY_PATH': 'lib/graphviz/java',
'TCLLIBPATH': 'lib/graphviz/tcl',

View File

@ -38,7 +38,7 @@ exts_list = [
# specify that Bundle easyblock should run a full sanity check, rather
# than just trying to load the module
full_sanity_check = True
local_full_sanity_check = True
sanity_check_paths = {
'files': [],

View File

@ -16,12 +16,12 @@ toolchain = {'name': 'intel', 'version': '2016a'}
source_urls = ['ftp://ftp.gnutls.org/gcrypt/gnutls/v%(version_major_minor)s']
sources = [SOURCE_TAR_XZ]
guilever = '1.8.8'
guileshortver = '.'.join(guilever.split('.')[:2])
local_guilever = '1.8.8'
local_guileshortver = '.'.join(local_guilever.split('.')[:2])
dependencies = [
('GMP', '6.1.0'),
('nettle', '3.1.1'),
('guile', guilever),
('guile', local_guilever),
('libtasn1', '4.7'),
('libidn', '1.32'),
('p11-kit', '0.23.2'),
@ -52,7 +52,7 @@ sanity_check_paths = {
SHLIB_EXT]] +
[
'lib/guile/%s/guile-gnutls-v-2.so' %
guileshortver],
local_guileshortver],
'dirs': ['include/gnutls'],
}

View File

@ -16,12 +16,12 @@ toolchain = {'name': 'foss', 'version': '2016a'}
source_urls = ['ftp://ftp.gnutls.org/gcrypt/gnutls/v%(version_major_minor)s']
sources = [SOURCE_TAR_XZ]
guilever = '1.8.8'
guileshortver = '.'.join(guilever.split('.')[:2])
local_guilever = '1.8.8'
local_guileshortver = '.'.join(local_guilever.split('.')[:2])
dependencies = [
('GMP', '6.1.0'),
('nettle', '3.1.1'),
('guile', guilever),
('guile', local_guilever),
('libtasn1', '4.7'),
('libidn', '1.32'),
('p11-kit', '0.23.2'),
@ -52,7 +52,7 @@ sanity_check_paths = {
SHLIB_EXT]] +
[
'lib/guile/%s/guile-gnutls-v-2.so' %
guileshortver],
local_guileshortver],
'dirs': ['include/gnutls'],
}

View File

@ -13,11 +13,11 @@ sources = [SOURCE_TAR_GZ]
patches = ['gtkglext-%(version)s_fix-gtk-local_compat.patch']
pangover = '1.37.1'
local_pangover = '1.37.1'
dependencies = [
('GTK+', '2.24.28'),
('Pango', pangover),
('pangox-local_compat', '0.0.2', '-Pango-%s' % pangover),
('Pango', local_pangover),
('pangox-local_compat', '0.0.2', '-Pango-%s' % local_pangover),
]
sanity_check_paths = {

View File

@ -12,14 +12,14 @@ local_local_comp_name = 'iccifort'
local_comp_ver = '2016.3.210'
local_gccver = '5.4.0'
local_local_binutilsver = '2.26'
gcclocal_suff = '-GCC-%s-%s' % (local_gccver, local_local_binutilsver)
local_comp = (local_local_comp_name, '%s%s' % (local_comp_ver, gcclocal_suff))
local_gcclocal_suff = '-GCC-%s-%s' % (local_gccver, local_local_binutilsver)
local_comp = (local_local_comp_name, '%s%s' % (local_comp_ver, local_gcclocal_suff))
dependencies = [
local_comp, # part of iimpic
('CUDA', '8.0.44', '', local_comp),
('icc', local_comp_ver, gcclocal_suff),
('ifort', local_comp_ver, gcclocal_suff),
('icc', local_comp_ver, local_gcclocal_suff),
('ifort', local_comp_ver, local_gcclocal_suff),
('impi', '5.1.3.181', '', ('iccifortcuda', version)),
('imkl', '11.3.3.210', '', ('iimpic', version)),
]

View File

@ -9,12 +9,12 @@ description = """Intel Cluster Toolchain Compiler Edition provides Intel C/C++ a
toolchain = SYSTEM
local_local_compver = '2015.3.187'
gcclocal_suff = '-GNU-4.9.3-2.25'
local_gcclocal_suff = '-GNU-4.9.3-2.25'
dependencies = [
('icc', local_local_compver, gcclocal_suff),
('ifort', local_local_compver, gcclocal_suff),
('OpenMPI', '1.8.8', '', ('iccifort', '%s%s' % (local_local_compver, gcclocal_suff))),
('icc', local_local_compver, local_gcclocal_suff),
('ifort', local_local_compver, local_gcclocal_suff),
('OpenMPI', '1.8.8', '', ('iccifort', '%s%s' % (local_local_compver, local_gcclocal_suff))),
('imkl', '11.2.3.187', '', ('iompi', version)),
]

View File

@ -28,15 +28,15 @@ builddependencies = [
('CMake', '3.5.2', '', True)
]
commands = "cd src && make yes-kokkos && "
commands += "make yes-user-phonon && make yes-misc && "
commands += "make lib-reax args='-m ifort' && make yes-reax && "
commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
commands += "make yes-user-reaxc && make yes-user-omp && "
commands += "make -j 16 intel_cpu_intelmpi && mv lmp_intel_cpu_intelmpi lammps"
local_commands = "cd src && make yes-kokkos && "
local_commands += "make yes-user-phonon && make yes-misc && "
local_commands += "make lib-reax args='-m ifort' && make yes-reax && "
local_commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
local_commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
local_commands += "make yes-user-reaxc && make yes-user-omp && "
local_commands += "make -j 16 intel_cpu_intelmpi && mv lmp_intel_cpu_intelmpi lammps"
cmds_map = [('.*', commands)]
cmds_map = [('.*', local_commands)]
files_to_copy = [
(['src/lammps'], 'bin'),

View File

@ -35,16 +35,16 @@ builddependencies = [
('CMake', '3.5.2', '', True)
]
commands = "cd src && make lib-gpu args='-b' && make yes-gpu && "
commands += "make yes-kokkos && "
commands += "make yes-user-phonon && make yes-misc && "
commands += "make lib-reax args='-m mpi' && make yes-reax && "
commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
commands += "make yes-user-reaxc && make yes-user-omp && "
commands += "make -j 16 kokkos_cuda_mpi && mv lmp_kokkos_cuda_mpi lammps"
local_commands = "cd src && make lib-gpu args='-b' && make yes-gpu && "
local_commands += "make yes-kokkos && "
local_commands += "make yes-user-phonon && make yes-misc && "
local_commands += "make lib-reax args='-m mpi' && make yes-reax && "
local_commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
local_commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
local_commands += "make yes-user-reaxc && make yes-user-omp && "
local_commands += "make -j 16 kokkos_cuda_mpi && mv lmp_kokkos_cuda_mpi lammps"
cmds_map = [('.*', commands)]
cmds_map = [('.*', local_commands)]
files_to_copy = [
(['src/lammps'], 'bin'),

View File

@ -37,15 +37,15 @@ builddependencies = [
maxparallel = 1
commands = "cd src && "
commands += "make lib-reax args='-m ifort' && make yes-reax && "
commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
commands += "make yes-user-reaxc && make yes-user-omp && make yes-user-intel && "
commands += "make yes-user-phonon && make yes-kokkos && "
commands += "make -j 16 intel_coprocessor && mv lmp_intel_coprocessor lammps"
local_commands = "cd src && "
local_commands += "make lib-reax args='-m ifort' && make yes-reax && "
local_commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
local_commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
local_commands += "make yes-user-reaxc && make yes-user-omp && make yes-user-intel && "
local_commands += "make yes-user-phonon && make yes-kokkos && "
local_commands += "make -j 16 intel_coprocessor && mv lmp_intel_coprocessor lammps"
cmds_map = [('.*', commands)]
cmds_map = [('.*', local_commands)]
files_to_copy = [
(['src/lammps'], 'bin'),

View File

@ -37,15 +37,15 @@ builddependencies = [
maxparallel = 1
commands = "cd src && "
commands += "make lib-reax args='-m ifort' && make yes-reax && "
commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
commands += "make yes-user-reaxc && make yes-user-omp && make yes-user-intel && "
commands += "make yes-user-phonon && make yes-kokkos && "
commands += "make -j 16 intel_coprocessor && mv lmp_intel_coprocessor lammps"
local_commands = "cd src && "
local_commands += "make lib-reax args='-m ifort' && make yes-reax && "
local_commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
local_commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
local_commands += "make yes-user-reaxc && make yes-user-omp && make yes-user-intel && "
local_commands += "make yes-user-phonon && make yes-kokkos && "
local_commands += "make -j 16 intel_coprocessor && mv lmp_intel_coprocessor lammps"
cmds_map = [('.*', commands)]
cmds_map = [('.*', local_commands)]
files_to_copy = [
(['src/lammps'], 'bin'),

View File

@ -28,15 +28,15 @@ builddependencies = [
('CMake', '3.5.2', '', True)
]
commands = "cd src && make yes-kokkos && "
commands += "make yes-user-phonon && make yes-misc && "
commands += "make lib-reax args='-m ifort' && make yes-reax && "
commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
commands += "make yes-user-reaxc && make yes-user-omp && "
commands += "make -j 16 intel_cpu_intelmpi && mv lmp_intel_cpu_intelmpi lammps"
local_commands = "cd src && make yes-kokkos && "
local_commands += "make yes-user-phonon && make yes-misc && "
local_commands += "make lib-reax args='-m ifort' && make yes-reax && "
local_commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
local_commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
local_commands += "make yes-user-reaxc && make yes-user-omp && "
local_commands += "make -j 16 intel_cpu_intelmpi && mv lmp_intel_cpu_intelmpi lammps"
cmds_map = [('.*', commands)]
cmds_map = [('.*', local_commands)]
files_to_copy = [
(['src/lammps'], 'bin'),

View File

@ -32,18 +32,18 @@ builddependencies = [
('CMake', '3.13.1', '', True),
]
commands = "cd src && export LC_ALL='en_US.utf8' && "
commands += "make lib-reax args='-m ifort' && "
commands += "make lib-meam args='-m ifort' && "
commands += "make yes-reax && make yes-meam && "
commands += "make yes-kokkos && "
commands += "make yes-user-phonon && make yes-misc && make yes-user-meamc && "
commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
commands += "make yes-user-reaxc && make yes-user-omp && "
commands += "make -j 16 intel_cpu_intelmpi && mv lmp_intel_cpu_intelmpi lammps"
local_commands = "cd src && export LC_ALL='en_US.utf8' && "
local_commands += "make lib-reax args='-m ifort' && "
local_commands += "make lib-meam args='-m ifort' && "
local_commands += "make yes-reax && make yes-meam && "
local_commands += "make yes-kokkos && "
local_commands += "make yes-user-phonon && make yes-misc && make yes-user-meamc && "
local_commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
local_commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
local_commands += "make yes-user-reaxc && make yes-user-omp && "
local_commands += "make -j 16 intel_cpu_intelmpi && mv lmp_intel_cpu_intelmpi lammps"
cmds_map = [('.*', commands)]
cmds_map = [('.*', local_commands)]
files_to_copy = [
(['src/lammps'], 'bin'),

View File

@ -31,16 +31,16 @@ builddependencies = [
# deprecated MEAM, REAX
commands = "cd src && "
commands += "make yes-kokkos && make yes-user-meamc && "
commands += "make yes-user-phonon && make yes-misc && "
commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
commands += "make yes-user-reaxc && make yes-user-omp && "
commands += "make yes-spin && "
commands += "make -j 16 intel_cpu_intelmpi && mv lmp_intel_cpu_intelmpi lammps"
local_commands = "cd src && "
local_commands += "make yes-kokkos && make yes-user-meamc && "
local_commands += "make yes-user-phonon && make yes-misc && "
local_commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
local_commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
local_commands += "make yes-user-reaxc && make yes-user-omp && "
local_commands += "make yes-spin && "
local_commands += "make -j 16 intel_cpu_intelmpi && mv lmp_intel_cpu_intelmpi lammps"
cmds_map = [('.*', commands)]
cmds_map = [('.*', local_commands)]
files_to_copy = [
(['src/lammps'], 'bin'),

View File

@ -32,15 +32,15 @@ builddependencies = [
('CMake', '3.5.2', '', True)
]
commands = "cd src && make yes-kokkos && "
commands += "make yes-user-phonon && make yes-misc && "
commands += "make lib-reax args='-m mpi' && make yes-reax && "
commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
commands += "make yes-user-reaxc && make yes-user-omp && "
commands += "make -j 16 omp && mv lmp_omp lammps"
local_commands = "cd src && make yes-kokkos && "
local_commands += "make yes-user-phonon && make yes-misc && "
local_commands += "make lib-reax args='-m mpi' && make yes-reax && "
local_commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
local_commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
local_commands += "make yes-user-reaxc && make yes-user-omp && "
local_commands += "make -j 16 omp && mv lmp_omp lammps"
cmds_map = [('.*', commands)]
cmds_map = [('.*', local_commands)]
files_to_copy = [
(['src/lammps'], 'bin'),

View File

@ -29,15 +29,15 @@ builddependencies = [
('CMake', '3.5.2', '', True),
]
commands = "cd src && make yes-kokkos && "
commands += "make yes-user-phonon && make yes-misc && "
commands += "make lib-reax args='-m ifort' && make yes-reax && "
commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
commands += "make yes-user-reaxc && make yes-user-omp && "
commands += "make -j 16 intel_cpu_intelmpi && mv lmp_intel_cpu_intelmpi lammps"
local_commands = "cd src && make yes-kokkos && "
local_commands += "make yes-user-phonon && make yes-misc && "
local_commands += "make lib-reax args='-m ifort' && make yes-reax && "
local_commands += "make yes-kspace && make yes-manybody && make yes-molecule && "
local_commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
local_commands += "make yes-user-reaxc && make yes-user-omp && "
local_commands += "make -j 16 intel_cpu_intelmpi && mv lmp_intel_cpu_intelmpi lammps"
cmds_map = [('.*', commands)]
cmds_map = [('.*', local_commands)]
files_to_copy = [
(['src/lammps'], 'bin'),

View File

@ -25,13 +25,13 @@ dependencies = [
]
commands = "cd src && make yes-kspace && make yes-manybody && make yes-molecule && "
commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
commands += "make yes-user-reaxc && make yes-user-omp && make yes-user-intel && "
commands += "sed -i -e 's/-no-offload/-qno-offload/g' MAKE/OPTIONS/Makefile.intel_cpu_intelmpi && "
commands += "make -j 16 intel_cpu_intelmpi && mv lmp_intel_cpu_intelmpi lammps"
local_commands = "cd src && make yes-kspace && make yes-manybody && make yes-molecule && "
local_commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
local_commands += "make yes-user-reaxc && make yes-user-omp && make yes-user-intel && "
local_commands += "sed -i -e 's/-no-offload/-qno-offload/g' MAKE/OPTIONS/Makefile.intel_cpu_intelmpi && "
local_commands += "make -j 16 intel_cpu_intelmpi && mv lmp_intel_cpu_intelmpi lammps"
cmds_map = [('.*', commands)]
cmds_map = [('.*', local_commands)]
files_to_copy = [
(['src/lammps'], 'bin'),

View File

@ -31,13 +31,13 @@ builddependencies = [
]
#commands = "cd lib/reax && make -f Makefile.ifort && cd ../.. && "
commands = "cd src && make yes-user-reaxc && make yes-user-omp && make yes-user-intel && "
commands += "make yes-kokkos && make yes-user-phonon && make lib-reax args='-m ifort' && make yes-reax && "
#commands += "sed -i -e 's/-no-offload/-qno-offload/g' MAKE/OPTIONS/Makefile.intel_cpu_intelmpi && "
commands += "make -j 16 intel_cpu_intelmpi && mv lmp_intel_cpu_intelmpi lammps"
#local_commands = "cd lib/reax && make -f Makefile.ifort && cd ../.. && "
local_commands = "cd src && make yes-user-reaxc && make yes-user-omp && make yes-user-intel && "
local_commands += "make yes-kokkos && make yes-user-phonon && make lib-reax args='-m ifort' && make yes-reax && "
#local_commands += "sed -i -e 's/-no-offload/-qno-offload/g' MAKE/OPTIONS/Makefile.intel_cpu_intelmpi && "
local_commands += "make -j 16 intel_cpu_intelmpi && mv lmp_intel_cpu_intelmpi lammps"
cmds_map = [('.*', commands)]
cmds_map = [('.*', local_commands)]
files_to_copy = [
(['src/lammps'], 'bin'),

View File

@ -25,13 +25,13 @@ dependencies = [
]
commands = "cd src && make yes-kspace && make yes-manybody && make yes-molecule && "
commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
commands += "make yes-user-reaxc && make yes-user-omp && make yes-user-intel && "
commands += "sed -i -e 's/-no-offload/-qno-offload/g' MAKE/OPTIONS/Makefile.intel_cpu_intelmpi && "
commands += "make -j 16 intel_cpu_intelmpi && mv lmp_intel_cpu_intelmpi lammps"
local_commands = "cd src && make yes-kspace && make yes-manybody && make yes-molecule && "
local_commands += "make yes-qeq && make yes-rigid && make yes-user-misc && "
local_commands += "make yes-user-reaxc && make yes-user-omp && make yes-user-intel && "
local_commands += "sed -i -e 's/-no-offload/-qno-offload/g' MAKE/OPTIONS/Makefile.intel_cpu_intelmpi && "
local_commands += "make -j 16 intel_cpu_intelmpi && mv lmp_intel_cpu_intelmpi lammps"
cmds_map = [('.*', commands)]
cmds_map = [('.*', local_commands)]
files_to_copy = [
(['src/lammps'], 'bin'),

View File

@ -13,12 +13,12 @@ toolchainopts = {'optarch': True}
sources = [SOURCE_TAR_GZ]
source_urls = [XORG_LIB_SOURCE]
libx11ver = '1.6.2'
versionsuffix = '-libX11-%s' % libx11ver
local_libx11ver = '1.6.2'
versionsuffix = '-libX11-%s' % local_libx11ver
dependencies = [
('libSM', '1.2.2'),
('libICE', '1.0.9'),
('libX11', libx11ver, '-Python-2.7.9'),
('libX11', local_libx11ver, '-Python-2.7.9'),
]
builddependencies = [

View File

@ -13,12 +13,12 @@ toolchainopts = {'optarch': True}
sources = [SOURCE_TAR_GZ]
source_urls = [XORG_LIB_SOURCE]
libx11ver = '1.6.5'
versionsuffix = '-libX11-%s' % libx11ver
local_libx11ver = '1.6.5'
versionsuffix = '-libX11-%s' % local_libx11ver
dependencies = [
('libSM', '1.2.2', '', True),
('libICE', '1.0.9', '', True),
('libX11', libx11ver),
('libX11', local_libx11ver),
]
builddependencies = [

View File

@ -16,7 +16,7 @@ dependencies = [('zlib', '1.2.8')]
configopts = "--with-pic"
majminver = ''.join(version.split('.')[:2])
local_majminver = ''.join(version.split('.')[:2])
sanity_check_paths = {
'files': [
'include/pngconf.h',
@ -26,14 +26,14 @@ sanity_check_paths = {
'lib/libpng.%s' %
SHLIB_EXT,
'lib/libpng%s.a' %
majminver,
local_majminver,
'lib/libpng%s.%s' %
(majminver,
(local_majminver,
SHLIB_EXT)],
'dirs': [
'bin',
'include/libpng%s' %
majminver,
local_majminver,
'share/man'],
}

View File

@ -26,12 +26,12 @@ separate_build_dir = True
# also requires patch file to rename file in CMakeLists.txt and src/Makefile.in
preconfigopts = "mv ../libxc-%(version)s/src/libxc_master.F03 ../libxc-%(version)s/src/libxc_master_F03.F90 && "
common_configopts = "-DENABLE_FORTRAN=ON -DENABLE_FORTRAN03=ON -DENABLE_XHOST=OFF"
local_common_configopts = "-DENABLE_FORTRAN=ON -DENABLE_FORTRAN03=ON -DENABLE_XHOST=OFF"
# perform iterative build to get both static and shared libraries
configopts = [
common_configopts + ' -DBUILD_SHARED_LIBS=OFF',
common_configopts + ' -DBUILD_SHARED_LIBS=ON',
local_common_configopts + ' -DBUILD_SHARED_LIBS=OFF',
local_common_configopts + ' -DBUILD_SHARED_LIBS=ON',
]
parallel = 1

View File

@ -12,12 +12,12 @@ toolchain = {'name': 'foss', 'version': '2014b'}
source_urls = ['http://xcb.freedesktop.org/dist/']
sources = [SOURCELOWER_TAR_GZ]
python = 'Python'
local_python = 'Python'
local_pyver = '2.7.8'
versionsuffix = '-%s-%s' % (python, local_pyver)
versionsuffix = '-%s-%s' % (local_python, local_pyver)
dependencies = [
(python, local_pyver),
(local_python, local_pyver),
('xcb-proto', '1.10', versionsuffix),
('libXau', '1.0.8'),
('libpthread-stubs', '0.3'),

View File

@ -12,12 +12,12 @@ toolchain = SYSTEM
source_urls = ['http://xcb.freedesktop.org/dist/']
sources = [SOURCELOWER_TAR_GZ]
python = 'Python'
local_python = 'Python'
local_pyver = '2.7.9'
versionsuffix = '-%s-%s' % (python, local_pyver)
versionsuffix = '-%s-%s' % (local_python, local_pyver)
dependencies = [
(python, local_pyver),
(local_python, local_pyver),
('xcb-proto', '1.11', versionsuffix),
('libXau', '1.0.8'),
('libpthread-stubs', '0.3'),

View File

@ -12,12 +12,12 @@ toolchain = {'name': 'intel', 'version': '2015b'}
source_urls = ['http://xcb.freedesktop.org/dist/']
sources = [SOURCELOWER_TAR_GZ]
python = 'Python'
local_python = 'Python'
local_pyver = '2.7.9'
versionsuffix = '-%s-%s' % (python, local_pyver)
versionsuffix = '-%s-%s' % (local_python, local_pyver)
dependencies = [
(python, local_pyver),
(local_python, local_pyver),
('xcb-proto', '1.11', versionsuffix),
('libXau', '1.0.8'),
('libpthread-stubs', '0.3'),

View File

@ -16,13 +16,13 @@ sources = [SOURCELOWER_TAR_GZ]
configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB'
pythonver = '2.7.3'
pythonshortver = '.'.join(pythonver.split('.')[0:2])
versionsuffix = '-%s-%s' % ('Python', pythonver)
local_pythonver = '2.7.3'
local_pythonshortver = '.'.join(local_pythonver.split('.')[0:2])
versionsuffix = '-%s-%s' % ('Python', local_pythonver)
dependencies = [
('zlib', '1.2.7'),
('Python', pythonver),
('Python', local_pythonver),
]
sanity_check_paths = {

View File

@ -15,13 +15,13 @@ sources = [SOURCELOWER_TAR_GZ]
configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB'
pythonver = '2.7.3'
pythonshortver = '.'.join(pythonver.split('.')[0:2])
versionsuffix = '-%s-%s' % ('Python', pythonver)
local_pythonver = '2.7.3'
local_pythonshortver = '.'.join(local_pythonver.split('.')[0:2])
versionsuffix = '-%s-%s' % ('Python', local_pythonver)
dependencies = [
('zlib', '1.2.7'),
('Python', pythonver),
('Python', local_pythonver),
]
sanity_check_paths = {

View File

@ -16,13 +16,13 @@ sources = [SOURCELOWER_TAR_GZ]
configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB'
pythonver = '2.7.3'
pythonshortver = '.'.join(pythonver.split('.')[0:2])
versionsuffix = '-%s-%s' % ('Python', pythonver)
local_pythonver = '2.7.3'
local_pythonshortver = '.'.join(local_pythonver.split('.')[0:2])
versionsuffix = '-%s-%s' % ('Python', local_pythonver)
dependencies = [
('zlib', '1.2.7'),
('Python', pythonver),
('Python', local_pythonver),
]
sanity_check_paths = {

View File

@ -16,13 +16,13 @@ sources = [SOURCELOWER_TAR_GZ]
configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB'
pythonver = '2.7.3'
pythonshortver = '.'.join(pythonver.split('.')[0:2])
versionsuffix = '-%s-%s' % ('Python', pythonver)
local_pythonver = '2.7.3'
local_pythonshortver = '.'.join(local_pythonver.split('.')[0:2])
versionsuffix = '-%s-%s' % ('Python', local_pythonver)
dependencies = [
('zlib', '1.2.7'),
('Python', pythonver),
('Python', local_pythonver),
]
sanity_check_paths = {

View File

@ -16,13 +16,13 @@ sources = [SOURCELOWER_TAR_GZ]
configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB'
pythonver = '2.7.3'
pythonshortver = '.'.join(pythonver.split('.')[0:2])
versionsuffix = '-%s-%s' % ('Python', pythonver)
local_pythonver = '2.7.3'
local_pythonshortver = '.'.join(local_pythonver.split('.')[0:2])
versionsuffix = '-%s-%s' % ('Python', local_pythonver)
dependencies = [
('zlib', '1.2.7'),
('Python', pythonver),
('Python', local_pythonver),
]
sanity_check_paths = {

View File

@ -16,13 +16,13 @@ sources = [SOURCELOWER_TAR_GZ]
configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB'
pythonver = '2.7.3'
pythonshortver = '.'.join(pythonver.split('.')[0:2])
versionsuffix = '-%s-%s' % ('Python', pythonver)
local_pythonver = '2.7.3'
local_pythonshortver = '.'.join(local_pythonver.split('.')[0:2])
versionsuffix = '-%s-%s' % ('Python', local_pythonver)
dependencies = [
('zlib', '1.2.8'),
('Python', pythonver),
('Python', local_pythonver),
]
sanity_check_paths = {

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