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new file: o/OCaml/OCaml-4.09.0-GCC-6.3.0-2.27.eb
new file: o/OCaml/OCaml-4.09.0.eb modified: s/Singularity/Singularity-3.5.2.eb new file: u/Unison/Unison-2.51.2-GCC-6.3.0-2.27.eb new file: v/VASP/VASP-5.4.4-intel-2017c-mkl=cluster-Wannier.eb new file: w/Wannier90/Wannier90-3.0.0-intel-2017c.eb new files yourself (see 'git help status').
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o/OCaml/OCaml-4.09.0-GCC-6.3.0-2.27.eb
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46
o/OCaml/OCaml-4.09.0-GCC-6.3.0-2.27.eb
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# IT4Innovations 2019
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name = 'OCaml'
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version = '4.09.0'
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homepage = 'http://ocaml.org/'
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description = """OCaml is a general purpose industrial-strength programming language
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with an emphasis on expressiveness and safety. Developed for more than 20 years at Inria
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it benefits from one of the most advanced type systems and supports functional,
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imperative and object-oriented styles of programming."""
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toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'}
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local_opam_ver = '2.0.3'
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source_urls = [
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'http://caml.inria.fr/pub/distrib/ocaml-%s' % '.'.join(version.split('.')[:2]),
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'https://github.com/ocaml/opam/releases/download/%s' % local_opam_ver,
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]
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sources = [
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SOURCELOWER_TAR_GZ,
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'opam-full-%s.tar.gz' % local_opam_ver,
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]
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builddependencies = [
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('Autotools', '20180311', '', True)
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]
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dependencies = [
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('ncurses', '6.1', '', True),
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('libreadline', '7.0', '', True),
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('GSL', '2.5', '', True),
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]
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# parallel build tends to break
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parallel = 1
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# handled by OPAM, order matters!
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# see https://opam.ocaml.org/packages
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exts_list = [
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('ocamlfind', '1.8.0',),
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('batteries', '2.9.0',),
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('ocaml-twt', '0.94.0',),
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('gsl', '1.24.0',),
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]
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moduleclass = 'lang'
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46
o/OCaml/OCaml-4.09.0.eb
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o/OCaml/OCaml-4.09.0.eb
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# IT4Innovations 2019
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name = 'OCaml'
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version = '4.09.0'
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homepage = 'http://ocaml.org/'
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description = """OCaml is a general purpose industrial-strength programming language
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with an emphasis on expressiveness and safety. Developed for more than 20 years at Inria
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it benefits from one of the most advanced type systems and supports functional,
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imperative and object-oriented styles of programming."""
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toolchain = SYSTEM
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local_opam_ver = '2.0.3'
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source_urls = [
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'http://caml.inria.fr/pub/distrib/ocaml-%s' % '.'.join(version.split('.')[:2]),
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'https://github.com/ocaml/opam/releases/download/%s' % local_opam_ver,
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]
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sources = [
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SOURCELOWER_TAR_GZ,
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'opam-full-%s.tar.gz' % local_opam_ver,
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]
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builddependencies = [
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('Autotools', '20180311', '', True)
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]
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dependencies = [
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('ncurses', '6.1', '', True),
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('libreadline', '7.0', '', True),
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('GSL', '2.5', '', True),
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]
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# parallel build tends to break
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parallel = 1
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# handled by OPAM, order matters!
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# see https://opam.ocaml.org/packages
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exts_list = [
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('ocamlfind', '1.8.0',),
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('batteries', '2.9.0',),
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('ocaml-twt', '0.94.0',),
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('gsl', '1.24.0',),
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]
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moduleclass = 'lang'
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@ -6,7 +6,6 @@ easyblock = 'ConfigureMake'
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name = 'Singularity'
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version = '3.5.2'
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versionsuffix = 'test'
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homepage = 'https://github.com/sylabs/singularity'
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description = "Singularity is an open source container platform designed to be simple, fast, and secure. Singularity is optimized for EPC and HPC workloads, allowing untrusted users to run untrusted containers in a trusted way."
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@ -37,15 +36,6 @@ postinstallcmds = [
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'echo "mksquashfs path = /apps/all/squashfs-tools/4.3/bin" >> %(installdir)s/etc/singularity/singularity.conf',
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]
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# next steps after installation
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# INSTALLATION_PATH=/apps/all
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# chown root:root $INSTALLATION_PATH/Singularity/*/etc/singularity/singularity.conf
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# chown root:root $INSTALLATION_PATH/Singularity/*/etc/singularity/capability.json
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# chown root:root $INSTALLATION_PATH/Singularity/*/etc/singularity/ecl.toml
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# chown root:root $INSTALLATION_PATH/Singularity/*/libexec/singularity/bin/*-suid
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# chmod 4755 $INSTALLATION_PATH/Singularity/*/libexec/singularity/bin/*-suid
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# chmod +s $INSTALLATION_PATH/Singularity/*/libexec/singularity/bin/*-suid
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sanity_check_paths = {
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'files': ['bin/singularity'],
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'dirs': ['bin', 'etc', 'libexec', 'var'],
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35
u/Unison/Unison-2.51.2-GCC-6.3.0-2.27.eb
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u/Unison/Unison-2.51.2-GCC-6.3.0-2.27.eb
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# IT4Innovations 2019
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easyblock = 'MakeCp'
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name = "Unison"
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version = "2.51.2"
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homepage = 'http://www.cis.upenn.edu/~bcpierce/unison'
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description = """Unison is a file-synchronization tool for Unix and Windows.
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It allows two replicas of a collection of files and directories
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to be stored on different hosts (or different disks on the same host),
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modified separately, and then brought up to date
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by propagating the changes in each replica to the other."""
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toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'}
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source_urls = ['https://github.com/bcpierce00/unison/archive/']
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sources = ['v%(version)s.tar.gz']
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#buildopts = 'UISTYLE=text '
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dependencies = [
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('OCaml', '4.09.0'),
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]
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files_to_copy = [(['unison'], 'bin')]
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parallel = 1
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sanity_check_paths = {
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'files': ['bin/unison'],
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'dirs': []
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}
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moduleclass = 'tools'
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69
v/VASP/VASP-5.4.4-intel-2017c-mkl=cluster-Wannier.eb
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v/VASP/VASP-5.4.4-intel-2017c-mkl=cluster-Wannier.eb
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# IT4Innovations 2020
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easyblock = 'MakeCp'
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name = 'VASP'
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version = '5.4.4'
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versionsuffix = '-mkl=cluster-Wannier'
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homepage = 'http://www.vasp.at'
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description = """The Vienna Ab initio Simulation Package (VASP) is a local_computer program for atomic scale
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materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics,
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from first principles.
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To use VASP, You need academic licenses from University of Wiena. Follow the instructions https://www.vasp.at/index.php/faqs.
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Then send us please a list of authorized users and their ID for which you need this access. Please use only http://support.it4i.cz/rt. We are responsible to verify your licenses. After succesfull verification You will be granted to use VASP in our enviroment."""
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toolchain = {'name': 'intel', 'version': '2017c'}
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toolchainopts = {'pic': True, 'usempi': True}
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# Vasp is proprietary software, see http://www.vasp.at/index.php/faqs on
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# how to get access to the code
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sources = ['%(namelower)s.%(version)s.tar.gz']
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#checksums = ['8ac646b108f974371eef398973373bf6']
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dependencies = [
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('zlib', '1.2.11', '', True),
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('Wannier90', '3.0.0'),
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]
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prebuildopts = 'cp arch/makefile.include.linux_intel ./makefile.include && '
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# path to libfftw3xf_intel.a is hardcoded in makefile.include
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prebuildopts += 'sed -i "s|\$(MKLROOT)/interfaces/fftw3xf|\$(FFTW_LIB_DIR)|" makefile.include && '
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# remove mkl flag to prevent mixing dynamic libs with the static libs in
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# LIBBLACS/SCALAPACK
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prebuildopts += 'sed -i "s|-mkl=sequential|-mkl=cluster|" makefile.include && '
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# OFLAG = -O2 -xAVX
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prebuildopts += 'sed -i "s|OFLAG = -O2|OFLAG = -O3 -xAVX|" makefile.include && '
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# objects add MKLROOT
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prebuildopts += 'sed -i "s|OBJECTS = fftmpiw.o fftmpi_map.o fft3dlib.o fftw3d.o|OBJECTS = fftmpiw.o fftmpi_map.o fft3dlib.o fftw3d.o \$\(MKLROOT\)/lib/intel64_lin/libfftw3xf_intel.a|" makefile.include && '
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# Wannier90 support
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prebuildopts += 'sed -i "s|LLIBS = |LLIBS = /apps/all/Wannier90/3.0.0-intel-2017c/lib/libwannier.a |" makefile.include && '
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prebuildopts += 'sed -i "s|-DscaLAPACK|-DscaLAPACK -DVASP2WANNIER90|" makefile.include && '
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# VASP uses LIBS as a list of folders
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prebuildopts += 'unset LIBS && '
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#prebuildopts += 'exit 1'
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buildopts = 'all BLACS="$LIBBLACS" SCALAPACK="$LIBSCALAPACK"'
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parallel = 1
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files_to_copy = [(['bin/vasp_std', 'bin/vasp_gam', 'bin/vasp_ncl'], 'bin')]
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sanity_check_paths = {
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'files': ['bin/vasp_std', 'bin/vasp_gam', 'bin/vasp_ncl'],
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'dirs': []
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}
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modluafooter = 'add_property("state","license")'
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moduleclass = 'phys'
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w/Wannier90/Wannier90-3.0.0-intel-2017c.eb
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w/Wannier90/Wannier90-3.0.0-intel-2017c.eb
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# IT4Innovations 2020
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easyblock = 'MakeCp'
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name = 'Wannier90'
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version = '3.0.0'
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homepage = 'http://www.wannier.org'
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description = """A tool for obtaining maximally-localised Wannier functions"""
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toolchain = {'name': 'intel', 'version': '2017c'}
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toolchainopts = {'usempi': True}
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github_account = 'wannier-developers'
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source_urls = [GITHUB_LOWER_SOURCE]
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sources = [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCELOWER_TAR_GZ}]
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patches = ['Wannier90_3x_ignore_makeinc.patch']
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checksums = [
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'f196e441dcd7b67159a1d09d2d7de2893b011a9f03aab6b30c4703ecbf20fe5b', # v3.0.0.tar.gz
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'561c0d296e0e30b8bb303702cd6e41ded54c153d9b9e6cd9cab73858e5e2945e', # Wannier90_3x_ignore_makeinc.patch
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]
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buildopts = 'all F90=$F90 MPIF90=$MPIF90 FCOPTS="$FFLAGS" LDOPTS="$FFLAGS" '
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buildopts += 'LIBDIR="$LAPACK_LIB_DIR" LIBS="$LIBLAPACK" '
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buildopts += 'COMMS=mpi'
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files_to_copy = [(['wannier90.x', 'postw90.x'], 'bin'), (['libwannier.a'], 'lib')]
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sanity_check_paths = {
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'files': ['bin/wannier90.x', 'bin/postw90.x', 'lib/libwannier.a'],
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'dirs': []
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}
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moduleclass = 'chem'
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