mirror of
https://code.it4i.cz/sccs/easyconfigs-it4i.git
synced 2025-04-04 06:11:36 +01:00
new file: duplicate.sh
deleted: a/ABAQUS/ABAQUS-2017-hotfix-1721.eb deleted: a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb deleted: a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb deleted: a/ARB/ARB-5.5-goolf-1.4.10.eb deleted: c/CUDA/CUDA-7.5.18.eb deleted: g/GSL/GSL-2.3-intel-2017a.eb deleted: h/HPL/HPL-2.2-intel-2017b.eb deleted: m/Mesa/Mesa-12.0.2-intel-2016b.eb deleted: remove_list deleted: s/ScientificPython/ScientificPython-2.9.4-intel-2016a-Python-2.7.11.eb deleted: s/SuiteSparse/SuiteSparse-4.5.5-intel-2017a-METIS-5.1.0.eb deleted: test.sh deleted: x/XML-Parser/XML-Parser-2.44-foss-2016a-Perl-5.22.1.eb deleted: x/xcb-proto/xcb-proto-1.11.eb
This commit is contained in:
Lukáš Krupčík
parent
839e449684
commit
a65b1f730a
@ -1,24 +0,0 @@
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name = 'ABAQUS'
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version = '2017'
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hotfix = '1721'
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versionsuffix = '-hotfix-%s' % hotfix
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homepage = 'http://www.simulia.com/products/abaqus_fea.html'
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description = """Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit
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dynamics FEA."""
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toolchain = {'name': 'dummy', 'version': ''}
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sources = [
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'%(version)s.AM_SIM_Abaqus_Extend.AllOS.1-6.tar',
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'%(version)s.AM_SIM_Abaqus_Extend.AllOS.2-6.tar',
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'%(version)s.AM_SIM_Abaqus_Extend.AllOS.3-6.tar',
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'%(version)s.AM_SIM_Abaqus_Extend.AllOS.4-6.tar',
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'%(version)s.AM_SIM_Abaqus_Extend.AllOS.5-6.tar',
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'%(version)s.AM_SIM_Abaqus_Extend.AllOS.6-6.tar',
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# hotfixes
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'%%(version)s.FP.CFA.%s.Part_3DEXP_SimulationServices.Linux64.tar' % hotfix,
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'%%(version)s.FP.CFA.%s.Part_SIMULIA_Abaqus_CAE.Linux64.tar' % hotfix,
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]
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moduleclass = 'cae'
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@ -1,41 +0,0 @@
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##
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# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
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#
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# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA
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# Authors:: Cedric Laczny <cedric.laczny@uni.lu>, Fotis Georgatos <fotis@cern.ch>
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# License:: MIT/GPL
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# $Id$
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#
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# This work implements a part of the HPCBIOS project and is a component of the policy:
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# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html
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##
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easyblock = 'ConfigureMake'
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name = 'AMOS'
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version = '3.1.0'
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homepage = 'http://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOS'
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description = """The AMOS consortium is committed to the development of open-source whole genome assembly software"""
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toolchain = {'name': 'goolf', 'version': '1.4.10'}
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toolchainopts = {'optarch': True, 'pic': True}
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sources = [SOURCELOWER_TAR_GZ]
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source_urls = [('http://sourceforge.net/projects/amos/files/%s/%s' % (name.lower(), version), 'download')]
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patches = ['AMOS-3.1.0_GCC-4.7.patch']
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dependencies = [
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('expat', '2.1.0'),
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('MUMmer', '3.23'),
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]
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sanity_check_paths = {
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'files': ['bin/AMOScmp', 'bin/AMOScmp-shortReads', 'bin/AMOScmp-shortReads-alignmentTrimmed'],
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'dirs': []
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}
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parallel = 1 # make crashes otherwise
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moduleclass = 'bio'
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@ -1,40 +0,0 @@
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##
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# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
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#
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# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA
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# Authors:: Cedric Laczny <cedric.laczny@uni.lu>, Fotis Georgatos <fotis@cern.ch>
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# License:: MIT/GPL
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# $Id$
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#
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# This work implements a part of the HPCBIOS project and is a component of the policy:
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# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html
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##
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easyblock = 'ConfigureMake'
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name = 'AMOS'
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version = '3.1.0'
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homepage = 'http://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOS'
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description = """The AMOS consortium is committed to the development of open-source whole genome assembly software"""
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toolchain = {'name': 'ictce', 'version': '5.3.0'}
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toolchainopts = {'optarch': True, 'pic': True}
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sources = [SOURCELOWER_TAR_GZ]
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source_urls = [('http://sourceforge.net/projects/amos/files/%s/%s' % (name.lower(), version), 'download')]
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dependencies = [
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('expat', '2.1.0'),
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('MUMmer', '3.23'),
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]
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sanity_check_paths = {
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'files': ['bin/AMOScmp', 'bin/AMOScmp-shortReads', 'bin/AMOScmp-shortReads-alignmentTrimmed'],
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'dirs': []
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}
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parallel = 1 # make crashes otherwise
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moduleclass = 'bio'
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@ -1,37 +0,0 @@
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name = 'ARB'
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version = '5.5'
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homepage = 'http://www.arb-home.de/'
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description = """The ARB software is a graphically oriented package comprising various tools for sequence database
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handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked
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to the respective sequence entries is structured according to phylogeny or other user defined criteria."""
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toolchain = {'name': 'goolf', 'version': '1.4.10'}
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# download from http://download.arb-home.de/release/arb_5.5, and rename to include version
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sources = ['%(namelower)s-%(version)s-src.tgz']
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patches = [
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'%(name)s-%(version)s_xmkmf.patch',
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'%(name)s-%(version)s_xflags.patch',
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]
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dependencies = [
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('libpng', '1.6.6'),
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('LibTIFF', '4.0.3'),
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('Java', '1.7.0_15', '', True),
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('lynx', '2.8.7'),
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('makedepend', '1.0.4'),
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('imake', '1.0.5'),
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('libXt', '1.1.4'),
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('motif', '2.3.4'), # libXm
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('libXpm', '3.5.11'),
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('libXaw', '1.0.12'),
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('Perl', '5.16.3'),
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('libxslt', '1.1.28'),
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('freeglut', '2.8.1'),
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('Sablotron', '1.0.3'),
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('libxml2', '2.9.1'),
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]
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moduleclass = 'bio'
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@ -1,16 +0,0 @@
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name = 'CUDA'
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version = '7.5.18'
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homepage = 'https://developer.nvidia.com/cuda-toolkit'
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description = """CUDA (formerly Compute Unified Device Architecture) is a parallel
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computing platform and programming model created by NVIDIA and implemented by the
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graphics processing units (GPUs) that they produce. CUDA gives developers access
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to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs."""
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toolchain = {'name': 'dummy', 'version': 'dummy'}
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source_urls = ['http://developer.download.nvidia.com/compute/cuda/%(version_major_minor)s/Prod/local_installers/']
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sources = ['%(namelower)s_%(version)s_linux.run']
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moduleclass = 'system'
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@ -37,4 +37,6 @@ done
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echo ""
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for read in `cat duplicate`; do grep "$read" it4i; done | sort -u > remove_list
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rm duplicate it4i develop
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for rm in `cat remove_list | cut -d ';' -f 2`; do find . -name $rm -exec rm {} \;; done
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rm duplicate it4i develop remove_list
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@ -1,19 +0,0 @@
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easyblock = 'ConfigureMake'
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name = 'GSL'
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version = '2.3'
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homepage = 'http://www.gnu.org/software/gsl/'
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description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers.
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The library provides a wide range of mathematical routines such as random number generators, special functions
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and least-squares fitting."""
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toolchain = {'name': 'intel', 'version': '2017a'}
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toolchainopts = {'unroll': True, 'pic': True}
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source_urls = [GNU_SOURCE]
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sources = [SOURCELOWER_TAR_GZ]
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configopts = "--with-pic"
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moduleclass = 'numlib'
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@ -1,19 +0,0 @@
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name = 'HPL'
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version = '2.2'
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homepage = 'http://www.netlib.org/benchmark/hpl/'
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description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits)
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arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available
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implementation of the High Performance Computing Linpack Benchmark."""
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toolchain = {'name': 'intel', 'version': '2017b'}
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toolchainopts = {'usempi': True}
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sources = [SOURCELOWER_TAR_GZ]
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source_urls = ['http://www.netlib.org/benchmark/%(namelower)s']
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checksums = ['ac7534163a09e21a5fa763e4e16dfc119bc84043f6e6a807aba666518f8df440']
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# fix Make dependencies, so parallel build also works
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patches = ['HPL_parallel-make.patch']
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moduleclass = 'tools'
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@ -1,62 +0,0 @@
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# the purpose of the easyconfig is to build a Mesa for software rendering,
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# not hardware rendering. This means you want at least SSE4.2. We build:
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# - llvmpipe: the high-performance Gallium LLVM driver
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# - swr: Intel's OpenSWR
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# it will try to use the llvmpipe by default. It you want swr, do:
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# GALLIUM_DRIVER=swr
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easyblock = 'ConfigureMake'
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name = 'Mesa'
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version = '12.0.2'
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homepage = 'http://www.mesa3d.org/'
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description = """Mesa is an open-source implementation of the OpenGL specification -
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a system for rendering interactive 3D graphics."""
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toolchain = {'name': 'intel', 'version': '2016b'}
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# swr detects and builds parts specific for AVX and AVX2. If we use
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# -xHost, this always gets overwritten and will fail.
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toolchainopts = {'optarch': False}
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sources = [SOURCELOWER_TAR_XZ]
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source_urls = [
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'https://mesa.freedesktop.org/archive/%(version)s',
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'ftp://ftp.freedesktop.org/pub/mesa/%(version)s',
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'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s',
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]
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builddependencies = [
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('flex', '2.6.0'),
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('Bison', '3.0.4'),
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('Autotools', '20150215'),
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('pkg-config', '0.29.1'),
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('Mako', '1.0.4', '-Python-2.7.12'),
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('libxml2', '2.9.4', '-Python-2.7.12'),
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]
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dependencies = [
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('zlib', '1.2.8'),
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('nettle', '3.2'),
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('libdrm', '2.4.70'),
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('LLVM', '3.8.1'),
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('X11', '20160819'),
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]
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# GLU is not part anymore of Mesa package!
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configopts = " --disable-osmesa --enable-gallium-osmesa --enable-gallium-llvm --enable-glx --disable-dri"
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configopts += " --disable-driglx-direct --with-gallium-drivers='swrast,swr' --disable-egl"
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configopts += " --with-osmesa-bits=32 --enable-texture-float --enable-llvm-shared-libs "
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sanity_check_paths = {
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||||
'files': ['lib/libGL.%s' % SHLIB_EXT, 'lib/libOSMesa.%s' % SHLIB_EXT,
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'lib/libGLESv1_CM.%s' % SHLIB_EXT, 'lib/libGLESv2.%s' % SHLIB_EXT,
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||||
'include/GL/glext.h', 'include/GL/gl_mangle.h',
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'include/GL/glx.h', 'include/GL/osmesa.h',
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'include/GL/gl.h', 'include/GL/glxext.h',
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'include/GL/glx_mangle.h', 'include/GLES/gl.h',
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'include/GLES2/gl2.h', 'include/GLES3/gl3.h'],
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'dirs': []
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}
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moduleclass = 'vis'
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12
remove_list
12
remove_list
@ -1,12 +0,0 @@
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0515e2cba0b6b96e9a955ad98a991119;SuiteSparse-4.5.5-intel-2017a-METIS-5.1.0.eb
|
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11f2dc760748e6e004378c8e2b277b70;XML-Parser-2.44-foss-2016a-Perl-5.22.1.eb
|
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1af592f5c53593710e9a65d4aecaa8f6;ABAQUS-2017-hotfix-1721.eb
|
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22df523f7cc85cc59ef94b864ba42cb8;HPL-2.2-intel-2017b.eb
|
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37a67325bd697ba16456d47f96a809e9;GSL-2.3-intel-2017a.eb
|
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42c0a56911761bebefa424a6580e80fe;ARB-5.5-goolf-1.4.10.eb
|
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454e580a5ededc4fc3ef984aac28bfe9;Mesa-12.0.2-intel-2016b.eb
|
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4f649bd51dadf7c43d0b5118db54d915;AMOS-3.1.0-goolf-1.4.10.eb
|
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515233dc386f6b025bc6c88ec8377c65;xcb-proto-1.11.eb
|
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a47f78ce229d82b7818feb0d9e2e9480;CUDA-7.5.18.eb
|
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d5a4360bcafc8486b843c83767044a7d;ScientificPython-2.9.4-intel-2016a-Python-2.7.11.eb
|
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e8b947919b8aeb4a6a394d6831f5d6a4;AMOS-3.1.0-ictce-5.3.0.eb
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@ -1,31 +0,0 @@
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easyblock = 'PythonPackage'
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name = 'ScientificPython'
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version = '2.9.4'
|
||||
versionsuffix = '-Python-%(pyver)s'
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||||
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||||
homepage = 'https://sourcesup.cru.fr/projects/scientific-py/'
|
||||
description = """ScientificPython is a collection of Python modules for scientific computing.
|
||||
It contains support for geometry, mathematical functions, statistics, physical units, IO, visualization,
|
||||
and parallelization."""
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||||
|
||||
toolchain = {'name': 'intel', 'version': '2016a'}
|
||||
|
||||
source_urls = ['https://sourcesup.cru.fr/frs/download.php/file/4570']
|
||||
sources = [SOURCE_TAR_GZ]
|
||||
|
||||
dependencies = [
|
||||
('Python', '2.7.11'),
|
||||
# older version of numpy than the one included in Python module required
|
||||
# cfr. https://bitbucket.org/khinsen/scientificpython/issue/13/numpy-19-has-dropped-support-for
|
||||
('numpy', '1.8.2', versionsuffix),
|
||||
]
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||||
|
||||
options = {'modulename': 'Scientific'}
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': [],
|
||||
'dirs': ['lib/python%(pyshortver)s/site-packages/Scientific'],
|
||||
}
|
||||
|
||||
moduleclass = 'math'
|
||||
@ -1,19 +0,0 @@
|
||||
name = 'SuiteSparse'
|
||||
version = '4.5.5'
|
||||
metis_ver = '5.1.0'
|
||||
versionsuffix = '-METIS-%s' % metis_ver
|
||||
|
||||
homepage = 'http://faculty.cse.tamu.edu/davis/suitesparse.html'
|
||||
description = """SuiteSparse is a collection of libraries manipulate sparse matrices."""
|
||||
|
||||
toolchain = {'name': 'intel', 'version': '2017a'}
|
||||
toolchainopts = {'unroll': True, 'pic': True}
|
||||
|
||||
source_urls = ['http://faculty.cse.tamu.edu/davis/SuiteSparse/']
|
||||
sources = [SOURCE_TAR_GZ]
|
||||
|
||||
dependencies = [('METIS', metis_ver)]
|
||||
|
||||
parallel = 1
|
||||
|
||||
moduleclass = 'numlib'
|
||||
@ -1,27 +0,0 @@
|
||||
easyblock = 'PerlModule'
|
||||
|
||||
name = 'XML-Parser'
|
||||
version = '2.44'
|
||||
versionsuffix = '-Perl-%(perlver)s'
|
||||
|
||||
homepage = 'http://search.cpan.org/~toddr/XML-Parser-2.41/'
|
||||
description = """This is a Perl extension interface to James Clark's XML parser, expat."""
|
||||
|
||||
toolchain = {'name': 'foss', 'version': '2016a'}
|
||||
|
||||
source_urls = ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/']
|
||||
sources = [SOURCE_TAR_GZ]
|
||||
|
||||
dependencies = [
|
||||
('Perl', '5.22.1'),
|
||||
('expat', '2.1.1')
|
||||
]
|
||||
|
||||
options = {'modulename': 'XML::Parser'}
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': [],
|
||||
'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/XML'],
|
||||
}
|
||||
|
||||
moduleclass = 'data'
|
||||
@ -1,26 +0,0 @@
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'xcb-proto'
|
||||
version = '1.11'
|
||||
|
||||
homepage = 'http://xcb.freedesktop.org/'
|
||||
description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint,
|
||||
latency hiding, direct access to the protocol, improved threading support, and extensibility."""
|
||||
|
||||
# even though xcb-proto is installed with configure-make-make install, nothing is actually built;
|
||||
# only .py files are installed using Python, and some .xlm flies copied, so OK to use dummy toolchain
|
||||
toolchain = {'name': 'dummy', 'version': 'dummy'}
|
||||
|
||||
source_urls = ['http://xcb.freedesktop.org/dist/']
|
||||
sources = [SOURCELOWER_TAR_GZ]
|
||||
|
||||
allow_system_deps = [('Python', SYS_PYTHON_VERSION)]
|
||||
|
||||
pyshortver = '.'.join(SYS_PYTHON_VERSION.split('.')[0:2])
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['lib/pkgconfig/xcb-proto.pc'],
|
||||
'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver]
|
||||
}
|
||||
|
||||
moduleclass = 'devel'
|
||||
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Reference in New Issue
Block a user