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Added OpenFOAM 4.1 and dependencies

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This commit is contained in:
Josef Hrabal 2017-04-12 11:05:56 +02:00
parent 670b5d8386
commit a16a091bf3
17 changed files with 771 additions and 17 deletions

4
b/Boost/Boost-1.63.0-intel-2017a.eb

@ -11,8 +11,8 @@ source_urls = [SOURCEFORGE_SOURCE]
sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))]
dependencies = [
('bzip2', '1.0.6'),
('zlib', '1.2.11'),
('bzip2', '1.0.6', '', True),
('zlib', '1.2.11', '', True),
]
configopts = '--without-libraries=python'

7
c/CGAL/CGAL-4.8.1-intel-2017a.eb

@ -15,9 +15,10 @@ dependencies = [
('zlib', '1.2.11', '', True),
('Boost', '1.63.0'),
('MPFR', '3.1.4'),
('GMP', '6.1.1'),
('libGLU', '9.0.0'),
('Qt5', '5.7.0'),
('GMP', '6.1.1', '', True),
('Mesa', '12.0.2'),
('libGLU', '9.0.0', '', True),
('Qt5', '5.8.0', '', ('GCC', '6.3.0-2.27')),
]
builddependencies = [

42
l/LLVM/LLVM-3.8.1-intel-2017a.eb Normal file

@ -0,0 +1,42 @@
easyblock = 'CMakeMake'
name = 'LLVM'
version = '3.8.1'
homepage = "http://llvm.org/"
description = """The LLVM Core libraries provide a modern source- and target-independent
optimizer, along with code generation support for many popular CPUs
(as well as some less common ones!) These libraries are built around a well
specified code representation known as the LLVM intermediate representation
("LLVM IR"). The LLVM Core libraries are well documented, and it is
particularly easy to invent your own language (or port an existing compiler)
to use LLVM as an optimizer and code generator."""
toolchain = {'name': 'intel', 'version': '2017a'}
toolchainopts = {'cstd': 'gnu++11'}
source_urls = ["http://llvm.org/releases/%(version)s"]
sources = ["llvm-%(version)s.src.tar.xz"]
builddependencies = [
('CMake', '3.7.2', '', True),
('Python', '2.7.13', '', True),
]
dependencies = [
('ncurses', '6.0', '', True),
('zlib', '1.2.11', '', True),
]
configopts = '-DBUILD_SHARED_LIBS=ON -DCMAKE_EXE_LINKER_FLAGS="$LDFLAGS -shared-intel" '
# required to install extra tools in bin/
configopts += "-DLLVM_INSTALL_UTILS=ON -DLLVM_TARGETS_TO_BUILD=X86 -DLLVM_ENABLE_ZLIB=ON"
sanity_check_paths = {
'files': ['bin/llvm-ar', 'bin/FileCheck'],
'dirs': ['include/llvm', 'include/llvm-c'],
}
separate_build_dir = True
moduleclass = 'compiler'

21
l/libGLU/libGLU-9.0.0.eb Normal file

@ -0,0 +1,21 @@
easyblock = 'ConfigureMake'
name = 'libGLU'
version = '9.0.0'
homepage = 'ftp://ftp.freedesktop.org/pub/mesa/glu/'
description = """The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. """
toolchain = {'name': 'dummy', 'version': ''}
toolchainopts = {'pic': True}
source_urls = ['ftp://ftp.freedesktop.org/pub/mesa/glu/']
sources = ['glu-%(version)s.tar.bz2']
sanity_check_paths = {
'files': ['lib/libGLU.so.1'],
'dirs': [],
}
moduleclass = 'vis'

26
l/libdrm/libdrm-2.4.75.eb Normal file

@ -0,0 +1,26 @@
easyblock = 'ConfigureMake'
name = 'libdrm'
version = '2.4.75'
homepage = 'http://dri.freedesktop.org'
description = """Direct Rendering Manager runtime library."""
source_urls = ['http://dri.freedesktop.org/libdrm/']
sources = [SOURCELOWER_TAR_GZ]
toolchain = {'name': 'dummy', 'version': ''}
dependencies = [
('X11', '20160819'),
('libpthread-stubs', '0.4'),
('libpciaccess', '0.13.1'),
]
sanity_check_paths = {
'files': ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.%s' % SHLIB_EXT,
'lib/libdrm_radeon.%s' % SHLIB_EXT, 'lib/libdrm.%s' % SHLIB_EXT, 'lib/libkms.%s' % SHLIB_EXT],
'dirs': ['include/libdrm', 'include/libkms', 'lib/pkgconfig'],
}
moduleclass = 'lib'

20
l/libpthread-stubs/libpthread-stubs-0.4.eb Normal file

@ -0,0 +1,20 @@
easyblock = 'ConfigureMake'
name = 'libpthread-stubs'
version = '0.4'
homepage = 'http://xcb.freedesktop.org/'
description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint,
latency hiding, direct access to the protocol, improved threading support, and extensibility."""
source_urls = ['http://xcb.freedesktop.org/dist/']
sources = [SOURCELOWER_TAR_GZ]
toolchain = {'name': 'dummy', 'version': ''}
sanity_check_paths = {
'files': ['lib/pkgconfig/pthread-stubs.pc'],
'dirs': [],
}
moduleclass = 'lib'

25
l/libxml2/libxml2-2.9.4.eb Normal file

@ -0,0 +1,25 @@
easyblock = 'ConfigureMake'
name = 'libxml2'
version = '2.9.4'
homepage = 'http://xmlsoft.org/'
description = """Libxml2 is the XML C parser and
toolchain developed for the Gnome project
(but usable outside of the Gnome platform)."""
toolchain = {'name': 'dummy', 'version': ''}
source_urls = [
'http://xmlsoft.org/sources/',
'http://xmlsoft.org/sources/old/'
]
sources = [SOURCELOWER_TAR_GZ]
preconfigopts = 'export LDFLAGS="-L$EBROOTZLIB/lib" && '
configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python'
dependencies = [('zlib', '1.2.11')]
moduleclass = 'lib'

25
m/METIS/METIS-5.1.0-intel-2017a.eb Normal file

@ -0,0 +1,25 @@
name = 'METIS'
version = '5.1.0'
homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/metis/overview'
description = """METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes,
and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the
multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes."""
toolchain = {'name': 'intel', 'version': '2017a'}
toolchainopts = {'pic': True}
sources = [SOURCELOWER_TAR_GZ]
source_urls = [
'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis',
'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD',
]
# We use 32bit for indices and 64bit for content
patches = ['METIS-5.1.0-use-doubles.patch']
builddependencies = [('CMake', '3.7.2', '', True)]
configopts = ['', 'shared=1']
moduleclass = 'math'

22
m/Mako/Mako-1.0.4-Python-2.7.13.eb Normal file

@ -0,0 +1,22 @@
easyblock = 'PythonPackage'
name = 'Mako'
version = '1.0.4'
versionsuffix = '-Python-%(pyver)s'
homepage = 'http://www.makotemplates.org'
description = """A super-fast templating language that borrows the best ideas from the existing templating languages"""
toolchain = {'name': 'dummy', 'version': ''}
source_urls = [PYPI_SOURCE]
sources = [SOURCE_TAR_GZ]
dependencies = [('Python', '2.7.13')]
sanity_check_paths = {
'files': ['bin/mako-render'],
'dirs': ['lib/python%(pyshortver)s/site-packages/%(name)s-%(version)s-py%(pyshortver)s.egg'],
}
moduleclass = 'devel'

59
m/Mesa/Mesa-12.0.2-intel-2017a.eb Normal file

@ -0,0 +1,59 @@
# the purpose of the easyconfig is to build a Mesa for software rendering,
# not hardware rendering. This means you want at least SSE4.2. We build:
# - llvmpipe: the high-performance Gallium LLVM driver
# - swr: Intel's OpenSWR
# it will try to use the llvmpipe by default. It you want swr, do:
# GALLIUM_DRIVER=swr
easyblock = 'ConfigureMake'
name = 'Mesa'
version = '12.0.2'
homepage = 'http://www.mesa3d.org/'
description = """Mesa is an open-source implementation of the OpenGL specification -
a system for rendering interactive 3D graphics."""
toolchain = {'name': 'intel', 'version': '2017a'}
# swr detects and builds parts specific for AVX and AVX2. If we use
# -xHost, this always gets overwritten and will fail.
toolchainopts = {'optarch': False}
sources = [SOURCELOWER_TAR_XZ]
source_urls = [
'https://mesa.freedesktop.org/archive/%(version)s',
'ftp://ftp.freedesktop.org/pub/mesa/%(version)s',
'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s',
]
builddependencies = [
('flex', '2.6.0', '', True),
('Bison', '3.0.4', '', True),
('Autotools', '20150215', '', True),
('pkg-config', '0.29.2', '', True),
('Mako', '1.0.4', '-Python-2.7.13', True),
('libxml2', '2.9.4', '', True),
]
dependencies = [
('zlib', '1.2.11', '', True),
('nettle', '3.2'),
('libdrm', '2.4.75', '', True),
('LLVM', '3.8.1'),
('X11', '20160819', '', True),
]
# GLU is not part anymore of Mesa package!
configopts = " --disable-osmesa --enable-gallium-osmesa --enable-gallium-llvm --enable-glx --disable-dri"
configopts += " --disable-driglx-direct --with-gallium-drivers='swrast,swr' --disable-egl"
configopts += " --with-osmesa-bits=32 --enable-texture-float --enable-llvm-shared-libs "
sanity_check_paths = {
'files': ['lib/libGL.%s' % SHLIB_EXT, 'lib/libOSMesa.%s' % SHLIB_EXT, 'lib/libGLESv1_CM.%s' % SHLIB_EXT,
'lib/libGLESv2.%s' %SHLIB_EXT, 'include/GL/glext.h', 'include/GL/gl_mangle.h', 'include/GL/glx.h',
'include/GL/osmesa.h', 'include/GL/wglext.h', 'include/GL/gl.h', 'include/GL/glxext.h',
'include/GL/glx_mangle.h', 'include/GLES/gl.h', 'include/GLES2/gl2.h', 'include/GLES3/gl3.h'],
'dirs': []
}
moduleclass = 'vis'

28
n/nettle/nettle-3.2-intel-2017a.eb Normal file

@ -0,0 +1,28 @@
easyblock = 'ConfigureMake'
name = 'nettle'
version = '3.2'
homepage = 'http://www.lysator.liu.se/~nisse/nettle/'
description = """Nettle is a cryptographic library that is designed to fit easily
in more or less any context: In crypto toolkits for object-oriented
languages (C++, Python, Pike, ...), in applications like LSH or GNUPG,
or even in kernel space."""
toolchain = {'name': 'intel', 'version': '2017a'}
source_urls = [GNU_SOURCE]
sources = [SOURCE_TAR_GZ]
dependencies = [
('GMP', '6.1.1', '', True),
]
sanity_check_paths = {
'files': ['bin/%s' % x for x in ['nettle-hash', 'nettle-lfib-stream', 'pkcs1-conv', 'sexp-conv']] +
['lib64/libhogweed.a', 'lib64/libhogweed.%s' % SHLIB_EXT,
'lib64/libnettle.a', 'lib64/libnettle.%s' % SHLIB_EXT],
'dirs': ['include/nettle'],
}
moduleclass = 'lib'

291
o/OpenFOAM/OpenFOAM-4.1-cleanup.patch Normal file

@ -0,0 +1,291 @@
# This patch removes all need for the ThirdParty files of OpenFOAM:
# we use EB dependencies for everything. It adjusts the paths, variables, etc
# We also let the install dir, compiler, etc be set by EB.
# Lastly, we also fix a small compile issue in 'ptscotchDecomp.C'
# Ward Poelmans <wpoely86@gmail.com>
diff -ur OpenFOAM-4.1.orig/applications/utilities/mesh/manipulation/setSet/Allwmake OpenFOAM-4.1/applications/utilities/mesh/manipulation/setSet/Allwmake
--- OpenFOAM-4.1.orig/applications/utilities/mesh/manipulation/setSet/Allwmake 2016-06-24 23:33:52.000000000 +0200
+++ OpenFOAM-4.1/applications/utilities/mesh/manipulation/setSet/Allwmake 2016-09-02 15:44:36.305512075 +0200
@@ -9,11 +9,11 @@
#
# use readline if available
#
-if [ -f /usr/include/readline/readline.h ]
+if [ -f $EBROOTLIBREADLINE/include/readline/readline.h ]
then
echo "Found <readline/readline.h> -- enabling readline support."
export COMP_FLAGS="-DHAS_READLINE"
- export LINK_FLAGS="-lreadline"
+ export LINK_FLAGS="-L$EBROOTLIBREADLINE/lib -lreadline -L$EBROOTNCURSES -lncurses"
fi
wmake
diff -ur OpenFOAM-4.1.orig/applications/utilities/postProcessing/graphics/PVReaders/Allwmake OpenFOAM-4.1/applications/utilities/postProcessing/graphics/PVReaders/Allwmake
--- OpenFOAM-4.1.orig/applications/utilities/postProcessing/graphics/PVReaders/Allwmake 2016-06-24 23:33:52.000000000 +0200
+++ OpenFOAM-4.1/applications/utilities/postProcessing/graphics/PVReaders/Allwmake 2016-09-02 15:44:36.305512075 +0200
@@ -16,7 +16,7 @@
}
# ensure CMake gets the correct C++ compiler
- [ -n "$WM_CXX" ] && export CXX="$WM_CXX"
+# [ -n "$WM_CXX" ] && export CXX="$WM_CXX"
wmake $targetType vtkPVReaders
PVblockMeshReader/Allwmake $*
diff -ur OpenFOAM-4.1.orig/etc/bashrc OpenFOAM-4.1/etc/bashrc
--- OpenFOAM-4.1.orig/etc/bashrc 2016-06-24 23:33:52.000000000 +0200
+++ OpenFOAM-4.1/etc/bashrc 2016-09-02 15:43:37.773220097 +0200
@@ -42,9 +42,8 @@
#
# Please set to the appropriate path if the default is not correct.
#
-[ $BASH_SOURCE ] && \
-export FOAM_INST_DIR=$(cd ${BASH_SOURCE%/*/*/*} && pwd -P) || \
-export FOAM_INST_DIR=$HOME/$WM_PROJECT
+# For Easybuild: set by the module
+#
# export FOAM_INST_DIR=~$WM_PROJECT
# export FOAM_INST_DIR=/opt/$WM_PROJECT
# export FOAM_INST_DIR=/usr/local/$WM_PROJECT
diff -ur OpenFOAM-4.1.orig/etc/config.sh/CGAL OpenFOAM-4.1/etc/config.sh/CGAL
--- OpenFOAM-4.1.orig/etc/config.sh/CGAL 2016-06-24 23:33:52.000000000 +0200
+++ OpenFOAM-4.1/etc/config.sh/CGAL 2016-09-02 15:43:37.773220097 +0200
@@ -36,37 +36,7 @@
#
#------------------------------------------------------------------------------
-boost_version=boost-system
-cgal_version=cgal-system
-#cgal_version=CGAL-4.8
-
-if [ -z "$SOURCE_CGAL_VERSIONS_ONLY" ]
-then
-
- common_path=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER
-
- export BOOST_ARCH_PATH=$common_path/$boost_version
- export CGAL_ARCH_PATH=$common_path/$cgal_version
-
- if [ "$FOAM_VERBOSE" -a "$PS1" ]
- then
- echo "Using CGAL and boost" 1>&2
- echo " $cgal_version at $CGAL_ARCH_PATH" 1>&2
- echo " $boost_version at $BOOST_ARCH_PATH" 1>&2
- fi
-
- if [ -d "$CGAL_ARCH_PATH" -a "$cgal_version" != "cgal-system" ]
- then
- _foamAddLib $CGAL_ARCH_PATH/lib
- fi
-
- if [ -d "$BOOST_ARCH_PATH" -a "$boost_version" != "boost-system" ]
- then
- _foamAddLib $BOOST_ARCH_PATH/lib
- fi
-
- unset boost_version cgal_version common_path
-
-fi
+export CGAL_ARCH_PATH=$EBROOTCGAL
+export BOOST_ARCH_PATH=$EBROOTBOOST
#------------------------------------------------------------------------------
diff -ur OpenFOAM-4.1.orig/etc/config.sh/gperftools OpenFOAM-4.1/etc/config.sh/gperftools
--- OpenFOAM-4.1.orig/etc/config.sh/gperftools 2016-06-24 23:33:52.000000000 +0200
+++ OpenFOAM-4.1/etc/config.sh/gperftools 2016-09-02 15:43:37.773220097 +0200
@@ -29,13 +29,7 @@
#
#------------------------------------------------------------------------------
-version=svn
-gperftools_install=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER
-
-GPERFTOOLS_VERSION=gperftools-$version
-GPERFTOOLS_ARCH_PATH=$gperftools_install/$GPERFTOOLS_VERSION
-
-export PATH=$GPERFTOOLS_ARCH_PATH/bin:$PATH
-export LD_LIBRARY_PATH=$GPERFTOOLS_ARCH_PATH/lib:$LD_LIBRARY_PATH
+GPERFTOOLS_VERSION=gperftools-$EBVERSIONGPERFTOOLS
+GPERFTOOLS_ARCH_PATH=$EBROOTGPERFTOOLS
#------------------------------------------------------------------------------
diff -ur OpenFOAM-4.1.orig/etc/config.sh/metis OpenFOAM-4.1/etc/config.sh/metis
--- OpenFOAM-4.1.orig/etc/config.sh/metis 2016-06-24 23:33:52.000000000 +0200
+++ OpenFOAM-4.1/etc/config.sh/metis 2016-09-02 15:43:37.773220097 +0200
@@ -34,7 +34,7 @@
#
#------------------------------------------------------------------------------
-export METIS_VERSION=metis-5.1.0
-export METIS_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$METIS_VERSION
+export METIS_VERSION=metis-$EBVERSIONMETIS
+export METIS_ARCH_PATH=$EBROOTMETIS
#------------------------------------------------------------------------------
diff -ur OpenFOAM-4.1.orig/etc/config.sh/mpi OpenFOAM-4.1/etc/config.sh/mpi
--- OpenFOAM-4.1.orig/etc/config.sh/mpi 2016-06-24 23:33:52.000000000 +0200
+++ OpenFOAM-4.1/etc/config.sh/mpi 2016-09-02 15:43:37.773220097 +0200
@@ -243,6 +243,9 @@
_foamAddPath $MPI_ARCH_PATH/bin64
_foamAddLib $MPI_ARCH_PATH/lib64
;;
+EASYBUILDMPI)
+ export FOAM_MPI=mpi
+ ;;
*)
export FOAM_MPI=dummy
;;
diff -ur OpenFOAM-4.1.orig/etc/config.sh/paraview OpenFOAM-4.1/etc/config.sh/paraview
--- OpenFOAM-4.1.orig/etc/config.sh/paraview 2016-06-24 23:33:52.000000000 +0200
+++ OpenFOAM-4.1/etc/config.sh/paraview 2016-09-02 15:43:37.773220097 +0200
@@ -41,21 +41,6 @@
) \
&& PATH="$cleaned"
-# Determine the cmake to be used
-unset CMAKE_HOME
-for cmake in cmake-3.2.1 cmake-2.8.12.1 cmake-2.8.8 cmake-2.8.4 cmake-2.8.3 \
- cmake-2.8.1
-do
- cmake=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$cmake
- if [ -r $cmake ]
- then
- export CMAKE_HOME=$cmake
- export CMAKE_ROOT=$cmake
- export PATH=$CMAKE_HOME/bin:$PATH
- break
- fi
-done
-
#- ParaView version, automatically determine major version
#export ParaView_VERSION=3.12.0
@@ -64,7 +49,7 @@
#export ParaView_VERSION=4.3.1
#export ParaView_VERSION=4.4.0
#export ParaView_VERSION=5.0.0
-export ParaView_VERSION=5.0.1
+export ParaView_VERSION=$EBVERSIONPARAVIEW
export ParaView_MAJOR=detect
@@ -105,21 +90,15 @@
paraviewInstDir=$WM_THIRD_PARTY_DIR/ParaView-$ParaView_VERSION
paraviewArchName=ParaView-$ParaView_VERSION
-export ParaView_DIR=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$paraviewArchName
+export ParaView_DIR=$EBROOTPARAVIEW
# Set paths if binaries or source are present
if [ -r $ParaView_DIR -o -r $paraviewInstDir ]
then
export ParaView_INCLUDE_DIR=$ParaView_DIR/include/paraview-$ParaView_MAJOR
- if [ ! -d $ParaView_INCLUDE_DIR -a -d $ParaView_DIR/include/paraview-3.0 ]
- then
- export ParaView_INCLUDE_DIR=$ParaView_DIR/include/paraview-3.0
- fi
ParaView_LIB_DIR=$ParaView_DIR/lib/paraview-$ParaView_MAJOR
- export PATH=$ParaView_DIR/bin:$PATH
- export LD_LIBRARY_PATH=$ParaView_LIB_DIR:$LD_LIBRARY_PATH
export PV_PLUGIN_PATH=$FOAM_LIBBIN/paraview-$ParaView_MAJOR
if [ "$FOAM_VERBOSE" -a "$PS1" ]
@@ -131,17 +110,6 @@
echo " PV_PLUGIN_PATH : $PV_PLUGIN_PATH"
fi
- # Add in python libraries if required
- paraviewPython=$ParaView_DIR/Utilities/VTKPythonWrapping
- if [ -r $paraviewPython ]
- then
- if [ "$PYTHONPATH" ]
- then
- export PYTHONPATH=$PYTHONPATH:$paraviewPython:$ParaView_LIB_DIR
- else
- export PYTHONPATH=$paraviewPython:$ParaView_LIB_DIR
- fi
- fi
else
unset PV_PLUGIN_PATH
fi
diff -ur OpenFOAM-4.1.orig/etc/config.sh/scotch OpenFOAM-4.1/etc/config.sh/scotch
--- OpenFOAM-4.1.orig/etc/config.sh/scotch 2016-06-24 23:33:52.000000000 +0200
+++ OpenFOAM-4.1/etc/config.sh/scotch 2016-09-02 15:43:37.773220097 +0200
@@ -37,7 +37,7 @@
#
#------------------------------------------------------------------------------
-export SCOTCH_VERSION=scotch_6.0.3
-export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$SCOTCH_VERSION
+export SCOTCH_VERSION=scotch_$EBVERSIONSCOTCH
+export SCOTCH_ARCH_PATH=$EBROOTSCOTCH
#------------------------------------------------------------------------------
diff -ur OpenFOAM-4.1.orig/etc/config.sh/settings OpenFOAM-4.1/etc/config.sh/settings
--- OpenFOAM-4.1.orig/etc/config.sh/settings 2016-06-24 23:33:52.000000000 +0200
+++ OpenFOAM-4.1/etc/config.sh/settings 2016-09-02 15:43:37.773220097 +0200
@@ -56,11 +56,11 @@
64)
WM_ARCH=linux64
export WM_COMPILER_LIB_ARCH=64
- export WM_CC='gcc'
- export WM_CXX='g++'
- export WM_CFLAGS='-m64 -fPIC'
- export WM_CXXFLAGS='-m64 -fPIC -std=c++0x'
- export WM_LDFLAGS='-m64'
+ export WM_CC=$CC
+ export WM_CXX=$CXX
+ export WM_CFLAGS=$CFLAGS
+ export WM_CXXFLAGS=$CXXFLAGS
+ export WM_LDFLAGS=$LDFLAGS
;;
*)
echo "Unknown WM_ARCH_OPTION '$WM_ARCH_OPTION', should be 32 or 64"\
diff -ur OpenFOAM-4.1.orig/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-4.1/src/parallel/decompose/ptscotchDecomp/Make/options
--- OpenFOAM-4.1.orig/src/parallel/decompose/ptscotchDecomp/Make/options 2016-06-24 23:33:52.000000000 +0200
+++ OpenFOAM-4.1/src/parallel/decompose/ptscotchDecomp/Make/options 2016-09-02 15:44:36.305512075 +0200
@@ -3,10 +3,8 @@
EXE_INC = \
$(PFLAGS) $(PINC) \
- -I$(SCOTCH_ROOT)/include \
-I$(SCOTCH_ARCH_PATH)/include/$(FOAM_MPI) \
- -I/usr/include/scotch \
-I../decompositionMethods/lnInclude
LIB_LIBS = \
- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit -lscotch ${LINK_FLAGS} -lrt
+ -L$(SCOTCH_ARCH_PATH)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit -lscotch ${LINK_FLAGS} -lrt
diff -ur OpenFOAM-4.1.orig/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C OpenFOAM-4.1/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C
--- OpenFOAM-4.1.orig/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2016-06-24 23:33:52.000000000 +0200
+++ OpenFOAM-4.1/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2016-09-02 15:45:13.376950242 +0200
@@ -30,10 +30,11 @@
#include "globalIndex.H"
#include "SubField.H"
+#include <mpi.h>
+
extern "C"
{
#include <stdio.h>
- #include <mpi.h>
#include "ptscotch.h"
}
diff -ur OpenFOAM-4.1.orig/src/parallel/decompose/scotchDecomp/Make/options OpenFOAM-4.1/src/parallel/decompose/scotchDecomp/Make/options
--- OpenFOAM-4.1.orig/src/parallel/decompose/scotchDecomp/Make/options 2016-06-24 23:33:52.000000000 +0200
+++ OpenFOAM-4.1/src/parallel/decompose/scotchDecomp/Make/options 2016-09-02 15:44:36.305512075 +0200
@@ -7,10 +7,8 @@
EXE_INC = \
$(PFLAGS) $(PINC) \
- -I$(SCOTCH_ROOT)/include \
-I$(SCOTCH_ARCH_PATH)/include \
- -I/usr/include/scotch \
-I../decompositionMethods/lnInclude
LIB_LIBS = \
- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt
+ -L$(SCOTCH_ARCH_PATH)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt

15
o/OpenFOAM/OpenFOAM-4.1-intel-2017a.eb

@ -18,19 +18,22 @@ checksums = ['318a446c4ae6366c7296b61184acd37c']
patches = ['OpenFOAM-%(version)s-cleanup.patch']
dependencies = [
('libreadline', '6.3'),
('ncurses', '6.0'),
('libreadline', '6.3', '', True),
('ncurses', '6.0', '', True),
# OpenFOAM requires 64 bit METIS using 32 bit indexes (array indexes)
('METIS', '5.1.0', '', True),
('METIS', '5.1.0'),
('SCOTCH', '6.0.4'),
('CGAL', '4.8.1'),
# Maximum ParaView version 5.2! (ADD_PARAVIEW_OBJECT_PANEL is no longer supported)
('ParaView', '5.1.2', '-mpi'),
]
builddependencies = [
('Bison', '3.0.4'),
('CMake', '3.7.2'),
('flex', '2.6.3', '', ('GCCcore', '6.3.0')),
('Bison', '3.0.4', '', True),
('CMake', '3.7.2', '', True),
('flex', '2.6.0', '', True),
]
modextrapaths = {'PATH': 'OpenFOAM-%(version)s/bin'}
moduleclass = 'cae'

12
p/ParaView/ParaView-5.1.2-intel-2017a-mpi.eb

@ -15,13 +15,13 @@ source_urls = ['http://www.paraview.org/paraview-downloads/%s' % download_suffix
sources = ["ParaView-v%(version)s.tar.gz"]
dependencies = [
('X11', '20160819'),
('X11', '20160819', '', True),
('Mesa', '12.0.2'),
('libGLU', '9.0.0'),
('Qt', '4.8.7'),
('libGLU', '9.0.0', '', True),
('Qt', '4.8.6', '', True),
('zlib', '1.2.11', '', True),
('HDF5', '1.8.17'),
('Python', '2.7.12'),
('Python', '2.7.13', '', True),
]
builddependencies = [('CMake', '3.7.2', '', True)]
@ -41,10 +41,10 @@ configopts += '-DBUILD_TESTING=OFF '
# Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md
# and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly
# Without internet connection, comment the following two lines (configopts and prebuildopts)
configopts += '-DExternalData_OBJECT_STORES=%(builddir)s/ExternalData '
#configopts += '-DExternalData_OBJECT_STORES=%(builddir)s/ExternalData '
# The ParaView server can be cranky, test downloads are quite often failing, especially in the case
# of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the
# first serial attempt would fail.
prebuildopts = 'make VTKData ;'
#prebuildopts = 'make VTKData ;'
moduleclass = 'vis'

27
p/pkg-config/pkg-config-0.29.2.eb Normal file

@ -0,0 +1,27 @@
easyblock = 'ConfigureMake'
name = 'pkg-config'
version = '0.29.2'
homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/'
description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the
correct compiler options on the command line so an application can use
gcc -o test test.c `pkg-config --libs --cflags glib-2.0`
for instance, rather than hard-coding values on where to find glib (or other libraries)."""
# don't use PAX, it might break.
tar_config_opts = True
toolchain = {'name': 'dummy', 'version': ''}
sources = [SOURCELOWER_TAR_GZ]
source_urls = ['http://pkgconfig.freedesktop.org/releases/']
configopts = " --with-internal-glib"
sanity_check_paths = {
'files': ['bin/pkg-config'],
'dirs': [],
}
moduleclass = 'devel'

33
q/Qt5/Qt5-5.8.0-GCC-6.3.0-2.27.eb Normal file

@ -0,0 +1,33 @@
easyblock = 'EB_Qt'
name = 'Qt5'
version = '5.8.0'
homepage = 'http://qt.io/'
description = "Qt is a comprehensive cross-platform C++ application framework."
toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'}
source_urls = [
'http://download.qt.io/official_releases/qt/%(version_major_minor)s/%(version)s/single/',
'http://download.qt.io/archive/qt/%(version_major_minor)s/%(version)s/single/'
]
sources = ['qt-everywhere-opensource-src-%(version)s.tar.xz']
patches = ['Qt5-5.7.1_fix-nan-inf.patch']
builddependencies = [
('pkg-config', '0.29.2', '', True),
]
# qtgamepad needs recent kernel/libevdev (fails on RHEL 6.x)
configopts = '-skip qtgamepad'
dependencies = [
('GLib', '2.40.0', '', True),
('libpng', '1.6.12', '', True),
('X11', '20160819', '', True),
('libGLU', '9.0.0', '', True),
]
moduleclass = 'devel'

131
x/X11/X11-20160819.eb Normal file

@ -0,0 +1,131 @@
easyblock = 'Bundle'
name = 'X11'
version = '20160819'
homepage = 'https://www.x.org'
description = "The X Window System (X11) is a windowing system for bitmap displays"
toolchain = {'name': 'dummy', 'version': ''}
source_urls = [
XORG_LIB_SOURCE,
XORG_PROTO_SOURCE,
'http://xcb.freedesktop.org/dist/',
'http://xkbcommon.org/download/',
'http://cgit.freedesktop.org/xorg/util/macros/snapshot',
]
builddependencies = [
('Autotools', '20150215'),
('pkg-config', '0.29.2'),
]
dependencies = [
('freetype', '2.5.3'),
('fontconfig', '2.11.1'),
('zlib', '1.2.11'),
('bzip2', '1.0.6'),
]
default_easyblock = 'ConfigureMake'
common_specs = {
'sources': [SOURCE_TAR_GZ],
'start_dir': '%(name)s-%(version)s',
}
components = [
('xorg-macros', '1.19.0', {
'sources': ['util-macros-%(version)s.tar.gz'],
'start_dir': 'util-macros-%(version)s',
}),
('libpthread-stubs', '0.3', common_specs),
('bigreqsproto', '1.1.2', common_specs),
('compositeproto', '0.4.2', common_specs),
('damageproto', '1.2.1', common_specs),
('dmxproto', '2.3.1', common_specs),
('dri2proto', '2.8', common_specs),
('dri3proto', '1.0', common_specs),
('fixesproto', '5.0', common_specs),
('fontsproto', '2.1.3', common_specs),
('glproto', '1.4.17', common_specs),
('inputproto', '2.3.1', common_specs),
('kbproto', '1.0.7', common_specs),
('presentproto', '1.0', common_specs),
('randrproto', '1.5.0', common_specs),
('recordproto', '1.14.2', common_specs),
('renderproto', '0.11', common_specs),
('resourceproto', '1.2.0', common_specs),
('scrnsaverproto', '1.2.2', common_specs),
('videoproto', '2.3.3', common_specs),
('xcmiscproto', '1.2.2', common_specs),
('xextproto', '7.3.0', common_specs),
('xf86bigfontproto', '1.2.0', common_specs),
('xf86dgaproto', '2.1', common_specs),
('xf86driproto', '2.1.1', common_specs),
('xf86vidmodeproto', '2.3.1', common_specs),
('xineramaproto', '1.2.1', common_specs),
('xproto', '7.0.28', common_specs),
('libXau', '1.0.8', common_specs),
('libXdmcp', '1.1.2', common_specs),
('xcb-proto', '1.11', common_specs),
('libxcb', '1.11.1', common_specs),
('xtrans', '1.3.5', common_specs),
('libxkbcommon', '0.6.1', {
'sources': ['libxkbcommon-%(version)s.tar.xz'],
'start_dir': 'libxkbcommon-%(version)s',
}),
('libX11', '1.6.3', common_specs),
('libXext', '1.3.3', common_specs),
('libFS', '1.0.7', common_specs),
('libICE', '1.0.9', common_specs),
('libSM', '1.2.2', common_specs),
('libXScrnSaver', '1.2.2', common_specs),
('libXt', '1.1.5', common_specs),
('libXmu', '1.1.2', common_specs),
('libXpm', '3.5.11', common_specs),
('libXaw', '1.0.13', common_specs),
('libXfixes', '5.0.2', common_specs),
('libXcomposite', '0.4.4', common_specs),
('libXrender', '0.9.9', common_specs),
('libXcursor', '1.1.14', common_specs),
('libXdamage', '1.1.4', common_specs),
('libfontenc', '1.1.3', common_specs),
('libXfont', '1.5.1', common_specs),
('libXft', '2.3.2', common_specs),
('libXi', '1.7.6', common_specs),
('libXinerama', '1.1.3', common_specs),
('libXrandr', '1.5.0', common_specs),
('libXres', '1.0.7', common_specs),
('libXtst', '1.2.2', common_specs),
('libXv', '1.0.10', common_specs),
('libXvMC', '1.0.9', common_specs),
('libXxf86dga', '1.1.4', common_specs),
('libXxf86vm', '1.1.4', common_specs),
('libdmx', '1.1.3', common_specs),
('libpciaccess', '0.13.4', common_specs),
('libxkbfile', '1.0.9', common_specs),
('libxshmfence', '1.2', common_specs),
('xcb-util', '0.4.0', common_specs),
('xcb-util-image', '0.4.0', common_specs),
('xcb-util-keysyms', '0.4.0', common_specs),
('xcb-util-renderutil', '0.3.9', common_specs),
('xcb-util-wm', '0.4.1', common_specs),
('xcb-util-cursor', '0.1.3', common_specs),
]
# Python is required for xcb-proto
allow_system_deps = [('Python', SYS_PYTHON_VERSION)]
pyshortver = '.'.join(SYS_PYTHON_VERSION.split('.')[0:2])
preconfigopts = "if [ ! -f configure ]; then ./autogen.sh; fi && "
# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module
full_sanity_check = True
sanity_check_paths = {
'files': ['include/X11/Xlib.h', 'include/X11/Xutil.h'],
'dirs': ['include/GL', 'include/X11', 'include/X11/extensions', 'lib',
'lib/python%s/site-packages/xcbgen' % pyshortver, 'lib/pkgconfig', 'share/pkgconfig'],
}
moduleclass = 'vis'