mirror of
https://code.it4i.cz/sccs/easyconfigs-it4i.git
synced 2025-04-18 12:40:58 +01:00
new file: a/ABAQUS/ABAQUS-2017-hotfix-1721.eb
new file: a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb new file: a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb new file: a/AMOS/AMOS-3.1.0_GCC-4.7.patch new file: a/ARB/ARB-5.5-goolf-1.4.10.eb new file: a/ARB/ARB-5.5_xflags.patch new file: a/ARB/ARB-5.5_xmkmf.patch modified: duplicate modified: it4i new file: remove_list modified: test.sh deleted: .test.sh.swp
This commit is contained in:
Easy Build
parent
9d8e05795e
commit
9f977316bb
BIN
.test.sh.swp
BIN
.test.sh.swp
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24
a/ABAQUS/ABAQUS-2017-hotfix-1721.eb
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24
a/ABAQUS/ABAQUS-2017-hotfix-1721.eb
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@ -0,0 +1,24 @@
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name = 'ABAQUS'
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version = '2017'
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hotfix = '1721'
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versionsuffix = '-hotfix-%s' % hotfix
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homepage = 'http://www.simulia.com/products/abaqus_fea.html'
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description = """Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit
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dynamics FEA."""
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toolchain = {'name': 'dummy', 'version': ''}
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sources = [
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'%(version)s.AM_SIM_Abaqus_Extend.AllOS.1-6.tar',
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'%(version)s.AM_SIM_Abaqus_Extend.AllOS.2-6.tar',
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'%(version)s.AM_SIM_Abaqus_Extend.AllOS.3-6.tar',
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'%(version)s.AM_SIM_Abaqus_Extend.AllOS.4-6.tar',
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'%(version)s.AM_SIM_Abaqus_Extend.AllOS.5-6.tar',
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'%(version)s.AM_SIM_Abaqus_Extend.AllOS.6-6.tar',
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# hotfixes
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'%%(version)s.FP.CFA.%s.Part_3DEXP_SimulationServices.Linux64.tar' % hotfix,
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'%%(version)s.FP.CFA.%s.Part_SIMULIA_Abaqus_CAE.Linux64.tar' % hotfix,
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]
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moduleclass = 'cae'
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41
a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb
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41
a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb
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@ -0,0 +1,41 @@
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##
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# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
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#
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# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA
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# Authors:: Cedric Laczny <cedric.laczny@uni.lu>, Fotis Georgatos <fotis@cern.ch>
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# License:: MIT/GPL
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# $Id$
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#
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# This work implements a part of the HPCBIOS project and is a component of the policy:
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# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html
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##
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easyblock = 'ConfigureMake'
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name = 'AMOS'
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version = '3.1.0'
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homepage = 'http://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOS'
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description = """The AMOS consortium is committed to the development of open-source whole genome assembly software"""
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toolchain = {'name': 'goolf', 'version': '1.4.10'}
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toolchainopts = {'optarch': True, 'pic': True}
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sources = [SOURCELOWER_TAR_GZ]
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source_urls = [('http://sourceforge.net/projects/amos/files/%s/%s' % (name.lower(), version), 'download')]
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patches = ['AMOS-3.1.0_GCC-4.7.patch']
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dependencies = [
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('expat', '2.1.0'),
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('MUMmer', '3.23'),
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]
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sanity_check_paths = {
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'files': ['bin/AMOScmp', 'bin/AMOScmp-shortReads', 'bin/AMOScmp-shortReads-alignmentTrimmed'],
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'dirs': []
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}
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parallel = 1 # make crashes otherwise
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moduleclass = 'bio'
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40
a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb
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40
a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb
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@ -0,0 +1,40 @@
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##
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# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
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#
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# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA
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# Authors:: Cedric Laczny <cedric.laczny@uni.lu>, Fotis Georgatos <fotis@cern.ch>
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# License:: MIT/GPL
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# $Id$
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#
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# This work implements a part of the HPCBIOS project and is a component of the policy:
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# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html
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##
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easyblock = 'ConfigureMake'
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name = 'AMOS'
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version = '3.1.0'
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homepage = 'http://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOS'
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description = """The AMOS consortium is committed to the development of open-source whole genome assembly software"""
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toolchain = {'name': 'ictce', 'version': '5.3.0'}
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toolchainopts = {'optarch': True, 'pic': True}
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sources = [SOURCELOWER_TAR_GZ]
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source_urls = [('http://sourceforge.net/projects/amos/files/%s/%s' % (name.lower(), version), 'download')]
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dependencies = [
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('expat', '2.1.0'),
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('MUMmer', '3.23'),
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]
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sanity_check_paths = {
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'files': ['bin/AMOScmp', 'bin/AMOScmp-shortReads', 'bin/AMOScmp-shortReads-alignmentTrimmed'],
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'dirs': []
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}
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parallel = 1 # make crashes otherwise
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moduleclass = 'bio'
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11
a/AMOS/AMOS-3.1.0_GCC-4.7.patch
Normal file
11
a/AMOS/AMOS-3.1.0_GCC-4.7.patch
Normal file
@ -0,0 +1,11 @@
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diff -ru amos-3.1.0.orig/src/Align/find-tandem.cc amos-3.1.0/src/Align/find-tandem.cc
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--- amos-3.1.0.orig/src/Align/find-tandem.cc 2011-07-25 01:27:26.000000000 +0200
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+++ amos-3.1.0/src/Align/find-tandem.cc 2013-03-27 13:51:23.024914923 +0100
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@@ -7,6 +7,7 @@
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#include <vector>
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#include <ctime>
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#include <sys/time.h>
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+#include <unistd.h>
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using namespace std;
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const int OFFSET_TABLE_SIZE = 100;
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37
a/ARB/ARB-5.5-goolf-1.4.10.eb
Normal file
37
a/ARB/ARB-5.5-goolf-1.4.10.eb
Normal file
@ -0,0 +1,37 @@
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name = 'ARB'
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version = '5.5'
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homepage = 'http://www.arb-home.de/'
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description = """The ARB software is a graphically oriented package comprising various tools for sequence database
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handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked
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to the respective sequence entries is structured according to phylogeny or other user defined criteria."""
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toolchain = {'name': 'goolf', 'version': '1.4.10'}
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# download from http://download.arb-home.de/release/arb_5.5, and rename to include version
|
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sources = ['%(namelower)s-%(version)s-src.tgz']
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|
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patches = [
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'%(name)s-%(version)s_xmkmf.patch',
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'%(name)s-%(version)s_xflags.patch',
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]
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dependencies = [
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('libpng', '1.6.6'),
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('LibTIFF', '4.0.3'),
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('Java', '1.7.0_15', '', True),
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('lynx', '2.8.7'),
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('makedepend', '1.0.4'),
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('imake', '1.0.5'),
|
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('libXt', '1.1.4'),
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('motif', '2.3.4'), # libXm
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('libXpm', '3.5.11'),
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('libXaw', '1.0.12'),
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('Perl', '5.16.3'),
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('libxslt', '1.1.28'),
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('freeglut', '2.8.1'),
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('Sablotron', '1.0.3'),
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('libxml2', '2.9.1'),
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]
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moduleclass = 'bio'
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221
a/ARB/ARB-5.5_xflags.patch
Normal file
221
a/ARB/ARB-5.5_xflags.patch
Normal file
@ -0,0 +1,221 @@
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--- Makefile.orig 2013-09-26 16:43:53.016909280 +0200
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+++ Makefile 2013-09-26 16:48:39.953144714 +0200
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@@ -31,7 +31,7 @@
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# configurable in config.makefile
|
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#
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# -----------------------------------------------------
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-# Read configuration
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+# Read configuration
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include config.makefile
|
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|
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ifeq ($(LD_LIBRARY_PATH),'')
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@@ -121,10 +121,10 @@
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|
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# Enable several warnings
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extended_warnings := -Wwrite-strings -Wunused -Wno-aggregate-return -Wshadow
|
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- extended_cpp_warnings := -Wnon-virtual-dtor -Wreorder -Wpointer-arith
|
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+ extended_cpp_warnings := -Wnon-virtual-dtor -Wreorder -Wpointer-arith
|
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ifneq ('$(USING_GCC_3XX)','')
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extended_cpp_warnings += -Wdisabled-optimization -Wmissing-format-attribute
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- extended_cpp_warnings += -Wmissing-noreturn # -Wfloat-equal
|
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+ extended_cpp_warnings += -Wmissing-noreturn # -Wfloat-equal
|
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endif
|
||||
ifneq ('$(USING_GCC_4XX)','')
|
||||
# extended_cpp_warnings += -Wwhatever
|
||||
@@ -135,7 +135,7 @@
|
||||
endif
|
||||
endif
|
||||
|
||||
-#---------------------- developer
|
||||
+#---------------------- developer
|
||||
|
||||
ifneq ($(DEVELOPER),ANY) # ANY=default setting (skip all developer specific code)
|
||||
ifdef dflags
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||||
@@ -153,7 +153,7 @@
|
||||
endif
|
||||
|
||||
ifeq ($(ARB_64),1)
|
||||
- dflags += -DARB_64 #-fPIC
|
||||
+ dflags += -DARB_64 #-fPIC
|
||||
lflags +=
|
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shared_cflags += -fPIC
|
||||
|
||||
@@ -175,7 +175,7 @@
|
||||
# build 32-bit ARB version on 64-bit host
|
||||
CROSS_LIB:=# empty = autodetect below
|
||||
cflags += -m32
|
||||
- lflags += -m32 -m elf_i386
|
||||
+ lflags += -m32 -m elf_i386
|
||||
else
|
||||
# build 32-bit ARB version on 32-bit host
|
||||
CROSS_LIB:=/lib
|
||||
@@ -214,20 +214,20 @@
|
||||
XHOME:=/usr/X11R6
|
||||
endif
|
||||
|
||||
-XINCLUDES:=-I$(XHOME)/include
|
||||
+XINCLUDES:=$(CPPFLAGS)
|
||||
ifdef DARWIN
|
||||
XINCLUDES += -I$(OSX_FW)/GLUT.framework/Headers -I$(OSX_FW)/OpenGL.framework/Headers -I$(OSX_SDK)/usr/include/krb5
|
||||
|
||||
- XLIBS := -L$(XHOME)/lib -lXm -lpng -lz -lXt -lX11 -lXext -lXp -lXmu -lXi
|
||||
+ XLIBS := -$(LDFLAGS) L$(XHOME)/lib -lXm -lpng -lz -lXt -lX11 -lXext -lXp -lXmu -lXi
|
||||
XLIBS += -Wl,-dylib_file,$(OSX_FW_OPENGL)/libGL.dylib:$(OSX_FW_OPENGL)/libGL.dylib
|
||||
XLIBS += -Wl,-dylib_file,$(OSX_FW_OPENGL)/libGLU.dylib:$(OSX_FW_OPENGL)/libGLU.dylib
|
||||
else
|
||||
- XLIBS:=-L$(XHOME)/$(CROSS_LIB) -lXm -lXpm -lXt -lXext -lX11
|
||||
+ XLIBS:=$(LDFLAGS) -L$(XHOME)/$(CROSS_LIB) -lXm -lXpm -lXt -lXext -lX11
|
||||
endif
|
||||
|
||||
#---------------------- open GL
|
||||
|
||||
-ifeq ($(OPENGL),1)
|
||||
+ifeq ($(OPENGL),1)
|
||||
cflags += -DARB_OPENGL # activate OPENGL code
|
||||
GL := gl # this is the name of the OPENGL base target
|
||||
GL_LIB := -lGL -L$(ARBHOME)/GL/glAW -lglAW
|
||||
@@ -280,7 +280,7 @@
|
||||
endif
|
||||
endif
|
||||
|
||||
-# -------------------------------------------------------------------------
|
||||
+# -------------------------------------------------------------------------
|
||||
# Don't put any machine/version/etc conditionals below!
|
||||
# (instead define variables above)
|
||||
# -------------------------------------------------------------------------
|
||||
@@ -335,9 +335,9 @@
|
||||
|
||||
lflags:=
|
||||
|
||||
-# -------------------------
|
||||
-# Main arb targets:
|
||||
-# -------------------------
|
||||
+# -------------------------
|
||||
+# Main arb targets:
|
||||
+# -------------------------
|
||||
|
||||
first_target:
|
||||
$(MAKE) checks
|
||||
@@ -521,7 +521,7 @@
|
||||
|
||||
# ---------------------
|
||||
|
||||
-check_setup: check_ENVIRONMENT check_DEBUG check_ARB_64 check_DEVELOPER check_GCC_VERSION
|
||||
+check_setup: check_ENVIRONMENT check_DEBUG check_ARB_64 check_DEVELOPER check_GCC_VERSION
|
||||
@echo Your setup seems to be ok.
|
||||
|
||||
checks: check_setup check_tabs
|
||||
@@ -558,7 +558,7 @@
|
||||
cflags:=$(cflags) -DFAKE_VTAB_PTR=char
|
||||
endif
|
||||
|
||||
-# -------------------------------
|
||||
+# -------------------------------
|
||||
# old PTSERVER or PTPAN?
|
||||
|
||||
ifeq ($(PTPAN),1)
|
||||
@@ -583,7 +583,7 @@
|
||||
ARCHS_PT_SERVER_LINK = $(ARCHS_PT_SERVER)
|
||||
endif
|
||||
|
||||
-# -------------------------------
|
||||
+# -------------------------------
|
||||
# List of all Directories
|
||||
|
||||
ARCHS = \
|
||||
@@ -894,7 +894,7 @@
|
||||
$(ARCHS_PROBE_COMMON) \
|
||||
$(ARCHS_PT_SERVER) \
|
||||
|
||||
-$(PROBE): $(ARCHS_PROBE_DEPEND:.a=.dummy) shared_libs
|
||||
+$(PROBE): $(ARCHS_PROBE_DEPEND:.a=.dummy) shared_libs
|
||||
@SOURCE_TOOLS/binuptodate.pl $@ $(ARCHS_PROBE_LINK) $(ARBDB_LIB) $(ARCHS_CLIENT_PROBE) || ( \
|
||||
echo Link $@ ; \
|
||||
echo "$(LINK_EXECUTABLE) $@ $(LIBPATH) $(ARCHS_PROBE_LINK) $(ARBDB_LIB) $(ARCHS_CLIENT_PROBE) $(SYSLIBS)" ; \
|
||||
@@ -1008,7 +1008,7 @@
|
||||
NAMES_COM/server.dummy : comtools
|
||||
NAMES_COM/client.dummy : comtools
|
||||
|
||||
-com_probe: PROBE_COM/PROBE_COM.dummy
|
||||
+com_probe: PROBE_COM/PROBE_COM.dummy
|
||||
com_names: NAMES_COM/NAMES_COM.dummy
|
||||
com_all: com_probe com_names
|
||||
|
||||
@@ -1151,7 +1151,7 @@
|
||||
#********************************************************************************
|
||||
|
||||
depends:
|
||||
- $(MAKE) comtools
|
||||
+ $(MAKE) comtools
|
||||
@echo "$(SEP) Partially build com interface"
|
||||
$(MAKE) PROBE_COM/PROBE_COM.depends
|
||||
$(MAKE) NAMES_COM/NAMES_COM.depends
|
||||
@@ -1162,10 +1162,10 @@
|
||||
depend: depends
|
||||
|
||||
proto_tools:
|
||||
- @echo $(SEP) Building prototyper
|
||||
+ @echo $(SEP) Building prototyper
|
||||
$(MAKE) AISC_MKPTPS/AISC_MKPTPS.dummy
|
||||
|
||||
-#proto: proto_tools TOOLS/TOOLS.dummy
|
||||
+#proto: proto_tools TOOLS/TOOLS.dummy
|
||||
proto: proto_tools
|
||||
@echo $(SEP) Updating prototypes
|
||||
$(MAKE) \
|
||||
@@ -1270,7 +1270,7 @@
|
||||
all
|
||||
@$(MAKE) testperlscripts
|
||||
|
||||
-testperlscripts:
|
||||
+testperlscripts:
|
||||
@$(MAKE) -C PERL_SCRIPTS/test test
|
||||
|
||||
perl_clean:
|
||||
@@ -1346,16 +1346,16 @@
|
||||
$(MAKE) all
|
||||
|
||||
tarfile: rebuild
|
||||
- $(MAKE) addlibs
|
||||
+ $(MAKE) addlibs
|
||||
util/arb_compress
|
||||
|
||||
tarfile_quick: all
|
||||
- $(MAKE) addlibs
|
||||
+ $(MAKE) addlibs
|
||||
util/arb_compress
|
||||
|
||||
-save: sourcetarfile
|
||||
+save: sourcetarfile
|
||||
|
||||
-# test early whether save will work
|
||||
+# test early whether save will work
|
||||
testsave:
|
||||
@util/arb_srclst.pl >/dev/null
|
||||
|
||||
@@ -1377,14 +1377,14 @@
|
||||
touch SOURCE_TOOLS/inc_major.stamp
|
||||
$(MAKE) do_release
|
||||
|
||||
-do_release:
|
||||
+do_release:
|
||||
@echo Building release
|
||||
@echo PATH=$(PATH)
|
||||
@echo ARBHOME=$(ARBHOME)
|
||||
-rm arb.tgz arbsrc.tgz
|
||||
$(MAKE) testsave
|
||||
$(MAKE) templ # auto upgrades version early
|
||||
- $(MAKE) tarfile
|
||||
+ $(MAKE) tarfile
|
||||
$(MAKE) sourcetarfile
|
||||
|
||||
release_quick:
|
||||
@@ -1407,7 +1407,7 @@
|
||||
arbapplications: nt pa ed e4 wetc pt na nal di ph ds pgt
|
||||
|
||||
# optionally things (no real harm for ARB if any of them fails):
|
||||
-arbxtras: tg pst a3 xmlin
|
||||
+arbxtras: tg pst a3 xmlin
|
||||
|
||||
tryxtras:
|
||||
@echo $(SEP)
|
||||
20
a/ARB/ARB-5.5_xmkmf.patch
Normal file
20
a/ARB/ARB-5.5_xmkmf.patch
Normal file
@ -0,0 +1,20 @@
|
||||
--- Makefile.orig 2013-07-16 14:55:29.971221036 +0200
|
||||
+++ Makefile 2013-07-16 14:58:28.543495360 +0200
|
||||
@@ -68,7 +68,7 @@
|
||||
4.3.1 4.3.2 4.3.3 \
|
||||
4.4.1 4.4.3 \
|
||||
4.6.1 \
|
||||
- 4.7.1
|
||||
+ 4.7.1 4.7.2
|
||||
|
||||
ALLOWED_GCC_VERSIONS=$(ALLOWED_GCC_3xx_VERSIONS) $(ALLOWED_GCC_4xx_VERSIONS)
|
||||
|
||||
@@ -322,7 +322,7 @@
|
||||
ifdef DARWIN
|
||||
XMKMF := $(PREFIX)/bin/xmkmf
|
||||
else
|
||||
- XMKMF := /usr/bin/X11/xmkmf
|
||||
+ XMKMF := xmkmf
|
||||
endif
|
||||
|
||||
MAKEDEPEND_PLAIN = makedepend
|
||||
14
duplicate
14
duplicate
@ -2,3 +2,17 @@ a47f78ce229d82b7818feb0d9e2e9480
|
||||
a47f78ce229d82b7818feb0d9e2e9480
|
||||
37a67325bd697ba16456d47f96a809e9
|
||||
a47f78ce229d82b7818feb0d9e2e9480;CUDA-7.5.18.eb
|
||||
42c0a56911761bebefa424a6580e80fe;ARB-5.5-goolf-1.4.10.eb
|
||||
a47f78ce229d82b7818feb0d9e2e9480;CUDA-7.5.18.eb
|
||||
1af592f5c53593710e9a65d4aecaa8f6;ABAQUS-2017-hotfix-1721.eb
|
||||
4f649bd51dadf7c43d0b5118db54d915;AMOS-3.1.0-goolf-1.4.10.eb
|
||||
e8b947919b8aeb4a6a394d6831f5d6a4;AMOS-3.1.0-ictce-5.3.0.eb
|
||||
42c0a56911761bebefa424a6580e80fe;ARB-5.5-goolf-1.4.10.eb
|
||||
a47f78ce229d82b7818feb0d9e2e9480;CUDA-7.5.18.eb
|
||||
37a67325bd697ba16456d47f96a809e9;GSL-2.3-intel-2017a.eb
|
||||
22df523f7cc85cc59ef94b864ba42cb8;HPL-2.2-intel-2017b.eb
|
||||
454e580a5ededc4fc3ef984aac28bfe9;Mesa-12.0.2-intel-2016b.eb
|
||||
d5a4360bcafc8486b843c83767044a7d;ScientificPython-2.9.4-intel-2016a-Python-2.7.11.eb
|
||||
0515e2cba0b6b96e9a955ad98a991119;SuiteSparse-4.5.5-intel-2017a-METIS-5.1.0.eb
|
||||
11f2dc760748e6e004378c8e2b277b70;XML-Parser-2.44-foss-2016a-Perl-5.22.1.eb
|
||||
515233dc386f6b025bc6c88ec8377c65;xcb-proto-1.11.eb
|
||||
|
||||
4
it4i
4
it4i
@ -47,6 +47,7 @@ f0e89dff152696e2faa04d68dcb1f2e0;arpack-ng-3.1.5-ictce-7.1.2.eb
|
||||
313521c944c200d1700d40c67bd74239;ABAQUS-6.12.1-linux-x86_64.eb
|
||||
9555dee6a3fdc68138b839751509fc68;ABAQUS-6.13.5-linux-x86_64.eb
|
||||
32f763ef588dd67a21c395fcc86806db;ABAQUS-6.14.1-linux-x86_64.eb
|
||||
1af592f5c53593710e9a65d4aecaa8f6;ABAQUS-2017-hotfix-1721.eb
|
||||
eda68e7a1bb264ea688d43f49f433912;ADF-2014.02.eb
|
||||
f560888282eae76d57e7a1c1c8ed7a02;ADF-2014.11.r48287-intel-2016a.eb
|
||||
a3aa2fe5a990af4fc1ec579118692d0f;ADF-2016.101.eb
|
||||
@ -65,6 +66,9 @@ e5f7b80ace520a57a48799e1b758cbfb;Amber-16-iomkl-2016.07-AmberTools-16-patchlevel
|
||||
9b4a3bdd94004db98200fe603075a9df;angsd-0.910-foss-2016a.eb
|
||||
aaaa90e3d19473c1e1c80e58bf608f03;ATK-2.20.0.eb
|
||||
27099b4bb553a10ec286fb5a08e1d48e;astroid-1.5.3-Python-2.7.13-base.eb
|
||||
42c0a56911761bebefa424a6580e80fe;ARB-5.5-goolf-1.4.10.eb
|
||||
4f649bd51dadf7c43d0b5118db54d915;AMOS-3.1.0-goolf-1.4.10.eb
|
||||
e8b947919b8aeb4a6a394d6831f5d6a4;AMOS-3.1.0-ictce-5.3.0.eb
|
||||
1ae55bc8022a90c788a2e0471f55cd4a;BCFtools-1.3-foss-2015g.eb
|
||||
9ea3e0c9fb112aebb83fe707fe14c57d;BCFtools-1.2-foss-2015a.eb
|
||||
d6b84288361d110b6be170792281811d;BCFtools-1.2-intel-2015a.eb
|
||||
|
||||
12
remove_list
Normal file
12
remove_list
Normal file
@ -0,0 +1,12 @@
|
||||
0515e2cba0b6b96e9a955ad98a991119;SuiteSparse-4.5.5-intel-2017a-METIS-5.1.0.eb
|
||||
11f2dc760748e6e004378c8e2b277b70;XML-Parser-2.44-foss-2016a-Perl-5.22.1.eb
|
||||
1af592f5c53593710e9a65d4aecaa8f6;ABAQUS-2017-hotfix-1721.eb
|
||||
22df523f7cc85cc59ef94b864ba42cb8;HPL-2.2-intel-2017b.eb
|
||||
37a67325bd697ba16456d47f96a809e9;GSL-2.3-intel-2017a.eb
|
||||
42c0a56911761bebefa424a6580e80fe;ARB-5.5-goolf-1.4.10.eb
|
||||
454e580a5ededc4fc3ef984aac28bfe9;Mesa-12.0.2-intel-2016b.eb
|
||||
4f649bd51dadf7c43d0b5118db54d915;AMOS-3.1.0-goolf-1.4.10.eb
|
||||
515233dc386f6b025bc6c88ec8377c65;xcb-proto-1.11.eb
|
||||
a47f78ce229d82b7818feb0d9e2e9480;CUDA-7.5.18.eb
|
||||
d5a4360bcafc8486b843c83767044a7d;ScientificPython-2.9.4-intel-2016a-Python-2.7.11.eb
|
||||
e8b947919b8aeb4a6a394d6831f5d6a4;AMOS-3.1.0-ictce-5.3.0.eb
|
||||
19
test.sh
19
test.sh
@ -3,7 +3,15 @@
|
||||
printf "\033c"
|
||||
DIR=`pwd`
|
||||
|
||||
format="| MD5 | %-32s | Name | %-80s | \n"
|
||||
red=$'\e[1;31m'
|
||||
grn=$'\e[1;32m'
|
||||
yel=$'\e[1;33m'
|
||||
blu=$'\e[1;34m'
|
||||
mag=$'\e[1;35m'
|
||||
cyn=$'\e[1;36m'
|
||||
end=$'\e[0m'
|
||||
|
||||
format="| MD5 | %-32s | Name | %-80s\n"
|
||||
|
||||
echo -n " Preparing IT4I .......... ["
|
||||
for a in `find /apps/easybuild/easyconfigs-develop/easybuild/easyconfigs/ -type f -name *.eb`; do md5sum $a | grep -v "__archive__" | sed 's| .||' | cut -d '/' -f 1,8 | tr "/" ";" | sed 's|apps||'; done > develop && echo -e "\e[32m OK \e[0m]" || echo -e "\e[31mFAIL\e[0m]"
|
||||
@ -11,6 +19,8 @@ for a in `find /apps/easybuild/easyconfigs-develop/easybuild/easyconfigs/ -type
|
||||
echo -n " Preparing develop ....... ["
|
||||
for a in `find . -type f -name *.eb`; do md5sum $a | grep -v "__archive__" | sed 's| .||' | cut -d '/' -f 1,4 | tr "/" ";" | sed 's|apps||'; done > it4i && echo -e "\e[32m OK \e[0m]" || echo -e "\e[31mFAIL\e[0m]"
|
||||
|
||||
echo ""
|
||||
|
||||
for x in `cat develop`; do
|
||||
X=$(echo $x | cut -d ';' -f 1)
|
||||
Xname=$(echo $x | cut -d ';' -f 2)
|
||||
@ -21,5 +31,10 @@ for x in `cat develop`; do
|
||||
break
|
||||
fi
|
||||
done
|
||||
printf "$format" "$X" "$Xname"
|
||||
printf "$format" "${grn}$X${end}" "${grn}$Xname${end}"
|
||||
done
|
||||
|
||||
echo ""
|
||||
|
||||
for read in `cat duplicate`; do grep "$read" it4i; done | sort -u > remove_list
|
||||
rm duplicate it4i develop
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user