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25
a/ANSYS/ANSYS-21.1-intel-2018a.eb
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25
a/ANSYS/ANSYS-21.1-intel-2018a.eb
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@ -0,0 +1,25 @@
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# IT4Innovations 2019
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name = 'ANSYS'
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version = '21.1'
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homepage = 'http://www.ansys.com'
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description = """ANSYS simulation software enables organizations to confidently predict
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how their products will operate in the real world. We believe that every product is
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a promise of something greater. """
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toolchain = {'name': 'intel', 'version': '2018a'}
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# create a zip file from the 3 install iso files.
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# make sure all files of the iso's are in the same directory.
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sources = ['ANSYS-21.1.tar.gz']
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dependencies = [
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('libGLU', '9.0.0', '', True),
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]
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import os
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license_server = os.getenv('EB_ANSYS_LICENSE_SERVER', 'lm-brno.ics.muni.cz')
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license_server_port = os.getenv('EB_ANSYS_LICENSE_SERVER_PORT', '2325:1055')
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moduleclass = 'tools'
|
38
a/arpack-ng/arpack-ng-3.8.0-intel-2020b.eb
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38
a/arpack-ng/arpack-ng-3.8.0-intel-2020b.eb
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@ -0,0 +1,38 @@
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# IT$Innovations 2021
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# LK
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easyblock = 'ConfigureMake'
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name = 'arpack-ng'
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version = "3.8.0"
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homepage = 'https://github.com/opencollab/arpack-ng'
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description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems."""
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toolchain = {'name': 'intel', 'version': '2020b'}
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toolchainopts = {'pic': True, 'usempi': True}
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github_account = 'opencollab'
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source_urls = [GITHUB_SOURCE]
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sources = ['%(version)s.tar.gz']
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checksums = ['ada5aeb3878874383307239c9235b716a8a170c6d096a6625bfd529844df003d']
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builddependencies = [
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('Autotools', '20200321'),
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('pkg-config', '0.29.2'),
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]
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dependencies = [
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('Eigen', '3.3.8')
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]
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preconfigopts = "sh bootstrap && "
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configopts = '--enable-mpi --with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"'
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sanity_check_paths = {
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'files': ["lib64/libarpack.la", "lib64/libarpack.%s" % SHLIB_EXT,
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"lib64/libparpack.la", "lib64/libparpack.%s" % SHLIB_EXT],
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'dirs': []
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}
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moduleclass = 'numlib'
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37
b/BerkeleyGW/BerkeleyGW-2.1.0-intel-2020b-Python-3.8.6.eb
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37
b/BerkeleyGW/BerkeleyGW-2.1.0-intel-2020b-Python-3.8.6.eb
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@ -0,0 +1,37 @@
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# IT4Innovations 2021
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# LK
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name = 'BerkeleyGW'
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version = '2.1.0'
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versionsuffix = '-Python-%(pyver)s'
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homepage = 'https://www.berkeleygw.org'
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description = """The BerkeleyGW Package is a set of computer codes that calculates the quasiparticle
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properties and the optical responses of a large variety of materials from bulk periodic crystals to
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nanostructures such as slabs, wires and molecules."""
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toolchain = {'name': 'intel', 'version': '2020b'}
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toolchainopts = {'usempi': True, 'openmp': True, 'precise': True}
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source_urls = ['https://berkeley.box.com/shared/static/']
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sources = [{'download_filename': 'ze3azi5vlyw7hpwvl9i5f82kaiid6g0x.gz', 'filename': SOURCE_TAR_GZ}]
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patches = [
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'BerkeleyGW-2.1.0_missing_file.patch',
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'BerkeleyGW-2.1.0_tests.patch',
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]
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checksums = [
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'31f3b643dd937350c3866338321d675d4a1b1f54c730b43ad74ae67e75a9e6f2', # BerkeleyGW-2.1.0.tar.gz
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'3689262976b873d65ffce4c89a5dc8ef5731914a5b71eadacba244750fc6b7ae', # BerkeleyGW-2.1.0_missing_file.patch
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'340bb854ae78cf5a1ce7b277f1c16dc3140ef9dbc39715082097b632858ef633', # BerkeleyGW-2.1.0_tests.patch
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]
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dependencies = [
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('ELPA', '2019.11.001'),
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('Python', '3.8.6'),
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('h5py', '2.10.0', versionsuffix),
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]
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# two tests failing (Si-EPM_subspace_cplx) with the intel toolchain, a few more if on skylake
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runtest = False
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moduleclass = 'phys'
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13
b/BerkeleyGW/BerkeleyGW-2.1.0_missing_file.patch
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13
b/BerkeleyGW/BerkeleyGW-2.1.0_missing_file.patch
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@ -0,0 +1,13 @@
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* manual.html is missing from the distribution
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author: Miguel Dias Costa (National University of Singapore)
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--- Makefile.orig 2018-06-18 12:12:48.081168468 +0800
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+++ Makefile 2018-06-18 12:13:02.795191541 +0800
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@@ -124,7 +124,7 @@
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# install cannot work on a whole directory
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cp -rf examples $(INSTDIR)/share/BerkeleyGW/
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cp -rf testsuite $(INSTDIR)/share/BerkeleyGW/
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- install manual.html $(INSTDIR)/share/BerkeleyGW/
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+ #install manual.html $(INSTDIR)/share/BerkeleyGW/
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else
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$(error Error: Please define installation prefix INSTDIR via 'make install INSTDIR='.)
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endif
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42
b/BerkeleyGW/BerkeleyGW-2.1.0_tests.patch
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42
b/BerkeleyGW/BerkeleyGW-2.1.0_tests.patch
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@ -0,0 +1,42 @@
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* enable parallel tests
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* allow test scripts to inherit environment
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* slightly raise tolerance in one test
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author: Miguel Dias Costa (National University of Singapore)
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--- Makefile.orig 2019-07-23 17:40:16.489733901 +0800
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+++ Makefile 2019-07-23 17:40:33.656497133 +0800
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@@ -157,7 +157,7 @@
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endif
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check: all
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- cd testsuite && $(MAKE) check
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+ cd testsuite && $(MAKE) check && $(MAKE) check-parallel
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check-save: all
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cd testsuite && $(MAKE) check-save
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--- testsuite/run_testsuite.sh.orig 2019-07-25 14:48:12.000000000 +0800
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+++ testsuite/run_testsuite.sh 2019-07-25 14:47:50.000000000 +0800
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@@ -1,4 +1,4 @@
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-#!/bin/bash -l
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+#!/bin/bash
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#
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# Copyright (C) 2005-2009 Heiko Appel, David Strubbe
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#
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--- MeanField/Utilities/mf_convert_wrapper.sh.orig 2019-07-26 09:52:27.648341000 +0800
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+++ MeanField/Utilities/mf_convert_wrapper.sh 2019-07-26 09:52:39.922114228 +0800
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@@ -1,4 +1,4 @@
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-#!/bin/bash -l
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+#!/bin/bash
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# David Strubbe, October 2010
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# Wrapper for mf_convert.x
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--- testsuite/GaAs-EPM/GaAs.test.orig 2019-07-26 10:45:19.798520000 +0800
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+++ testsuite/GaAs-EPM/GaAs.test 2019-07-26 10:45:37.753775275 +0800
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@@ -32,7 +32,7 @@
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Output : WFN.out
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Input : WFN.in PIPE
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-Precision : 8e-15
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+Precision : 9e-15
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match ; Eigenvalue 1 at k-pt 1 ; GREP(WFN.out, "kpoint 1", 2, 1); -0.2710614199849328
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match ; Eigenvalue 10 at k-pt 1 ; GREP(WFN.out, "kpoint 1", 2, 10); 1.2565373697755460
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match ; Eigenvalue 18 at k-pt 2 ; GREP(WFN.out, "kpoint 2", 2, 18); 2.1322637363008994
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28
b/Bison/Bison-3.7.6-GCCcore-10.2.0.eb
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28
b/Bison/Bison-3.7.6-GCCcore-10.2.0.eb
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@ -0,0 +1,28 @@
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easyblock = 'ConfigureMake'
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||||
|
||||
name = 'Bison'
|
||||
version = '3.7.6'
|
||||
|
||||
homepage = 'https://www.gnu.org/software/bison'
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||||
description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar
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||||
into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables."""
|
||||
|
||||
toolchain = {'name': 'GCCcore', 'version': '10.2.0'}
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|
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source_urls = [GNU_SOURCE]
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sources = [SOURCELOWER_TAR_GZ]
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# checksums = ['1dd952839cf0d5a8178c691eeae40dc48fa50d18dcce648b1ad9ae0195367d13']
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||||
|
||||
builddependencies = [
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('M4', '1.4.18'),
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# use same binutils version that was used when building GCCcore toolchain
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||||
('binutils', '2.35', '', True),
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]
|
||||
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/%s' % x for x in ['bison', 'yacc']] + [('lib/liby.a', 'lib64/liby.a')],
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'dirs': [],
|
||||
}
|
||||
|
||||
moduleclass = 'lang'
|
26
b/bwidget/bwidget-1.9.14-GCCcore-10.2.0.eb
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26
b/bwidget/bwidget-1.9.14-GCCcore-10.2.0.eb
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@ -0,0 +1,26 @@
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||||
easyblock = 'Tarball'
|
||||
|
||||
name = 'bwidget'
|
||||
version = '1.9.14'
|
||||
|
||||
homepage = 'https://core.tcl-lang.org/bwidget/home'
|
||||
description = 'The BWidget Toolkit is a high-level Widget Set for Tcl/Tk built using native Tcl/Tk 8.x namespaces.'
|
||||
|
||||
toolchain = {'name': 'GCCcore', 'version': '10.2.0'}
|
||||
|
||||
source_urls = ['https://downloads.sourceforge.net/project/tcllib/BWidget/%(version)s/']
|
||||
sources = [SOURCELOWER_TAR_GZ]
|
||||
checksums = ['8e9692140167161877601445e7a5b9da5bb738ce8d08ee99b016629bc784a672']
|
||||
|
||||
builddependencies = [('binutils', '2.35')]
|
||||
|
||||
dependencies = [('Tk', '8.6.11')]
|
||||
|
||||
modextrapaths = {'TCLLIBPATH': '.'}
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['button.tcl'],
|
||||
'dirs': ['BWman'],
|
||||
}
|
||||
|
||||
moduleclass = 'vis'
|
33
c/CMake/CMake-3.18.4.eb
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33
c/CMake/CMake-3.18.4.eb
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@ -0,0 +1,33 @@
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||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
name = 'CMake'
|
||||
version = '3.18.4'
|
||||
|
||||
homepage = 'https://www.cmake.org'
|
||||
|
||||
description = """
|
||||
CMake, the cross-platform, open-source build system. CMake is a family of
|
||||
tools designed to build, test and package software.
|
||||
"""
|
||||
|
||||
toolchain = SYSTEM
|
||||
|
||||
source_urls = ['https://www.cmake.org/files/v%(version_major_minor)s']
|
||||
sources = [SOURCELOWER_TAR_GZ]
|
||||
checksums = ['597c61358e6a92ecbfad42a9b5321ddd801fc7e7eca08441307c9138382d4f77']
|
||||
|
||||
dependencies = [
|
||||
('ncurses', '6.2'),
|
||||
('zlib', '1.2.11'),
|
||||
('bzip2', '1.0.8'),
|
||||
('cURL', '7.72.0'),
|
||||
('libarchive', '3.4.3'),
|
||||
# OS dependency should be preferred if the os version is more recent then this version,
|
||||
# it's nice to have an up to date openssl for security reasons
|
||||
# ('OpenSSL', '1.1.1h'),
|
||||
]
|
||||
|
||||
osdependencies = [OS_PKG_OPENSSL_DEV]
|
||||
|
||||
moduleclass = 'devel'
|
46
c/cURL/cURL-7.72.0.eb
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46
c/cURL/cURL-7.72.0.eb
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@ -0,0 +1,46 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'cURL'
|
||||
version = '7.72.0'
|
||||
|
||||
homepage = 'https://curl.haxx.se'
|
||||
|
||||
description = """
|
||||
libcurl is a free and easy-to-use client-side URL transfer library,
|
||||
supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP,
|
||||
LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP.
|
||||
libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP
|
||||
form based upload, proxies, cookies, user+password authentication (Basic,
|
||||
Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling
|
||||
and more.
|
||||
"""
|
||||
|
||||
toolchain = SYSTEM
|
||||
|
||||
source_urls = ['https://curl.haxx.se/download/']
|
||||
sources = [SOURCELOWER_TAR_GZ]
|
||||
checksums = ['d4d5899a3868fbb6ae1856c3e55a32ce35913de3956d1973caccd37bd0174fa2']
|
||||
|
||||
dependencies = [
|
||||
('zlib', '1.2.11'),
|
||||
# OS dependency should be preferred if the os version is more recent then this version,
|
||||
# it's nice to have an up to date openssl for security reasons
|
||||
# ('OpenSSL', '1.1.1h')
|
||||
]
|
||||
|
||||
osdependencies = [OS_PKG_OPENSSL_DEV]
|
||||
|
||||
configopts = '--with-zlib'
|
||||
# configopts += '--with-ssl=$EBROOTOPENSSL'
|
||||
|
||||
modextravars = {'CURL_INCLUDES': '%(installdir)s/include'}
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT],
|
||||
'dirs': ['lib/pkgconfig', 'include/curl'],
|
||||
}
|
||||
|
||||
moduleclass = 'tools'
|
72
d/DFTB+/DFTB+-21.1-intel-2020a-Python-3.8.2.eb
Normal file
72
d/DFTB+/DFTB+-21.1-intel-2020a-Python-3.8.2.eb
Normal file
@ -0,0 +1,72 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'CMakeMake'
|
||||
|
||||
name = 'DFTB+'
|
||||
version = '21.1'
|
||||
versionsuffix = '-Python-%(pyver)s'
|
||||
|
||||
homepage = 'https://www.dftb-plus.info'
|
||||
description = """DFTB+ is a fast and efficient versatile quantum mechanical simulation package.
|
||||
It is based on the Density Functional Tight Binding (DFTB) method, containing
|
||||
almost all of the useful extensions which have been developed for the DFTB
|
||||
framework so far. Using DFTB+ you can carry out quantum mechanical simulations
|
||||
like with ab-initio density functional theory based packages, but in an
|
||||
approximate way gaining typically around two order of magnitude in speed."""
|
||||
|
||||
toolchain = {'name': 'intel', 'version': '2020a'}
|
||||
toolchainopts = {'lowopt': True, 'optarch': False}
|
||||
|
||||
local_external_dir = '%%(builddir)s/dftbplus-%%(version)s/external/%s/origin/'
|
||||
local_external_extract = 'mkdir -p %s && tar -C %s' % (local_external_dir, local_external_dir)
|
||||
local_external_extract += ' --strip-components=1 -xzf %%s'
|
||||
|
||||
sources = [
|
||||
{
|
||||
# DFTB+ source code
|
||||
'source_urls': ['https://github.com/dftbplus/dftbplus/archive'],
|
||||
'download_filename': '%(version)s.tar.gz',
|
||||
'filename': SOURCE_TAR_GZ,
|
||||
},
|
||||
{
|
||||
# Slater-Koster (slakos) data for testing
|
||||
'source_urls': ['https://github.com/dftbplus/testparams/archive'],
|
||||
'download_filename': 'd0ea16df2b56d14c7c3dc9329a8d3bac9fea50a0.tar.gz',
|
||||
'filename': 'slakos-data-%(version)s.tar.gz',
|
||||
'extract_cmd': local_external_extract % ('slakos', 'slakos'),
|
||||
},
|
||||
]
|
||||
|
||||
builddependencies = [
|
||||
('CMake', '3.16.4'),
|
||||
]
|
||||
|
||||
dependencies = [
|
||||
('Python', '3.8.2'),
|
||||
('SciPy-bundle', '2020.03', versionsuffix),
|
||||
('arpack-ng', '3.5.0'),
|
||||
('dftd3-lib', '0.9', '', ('GCC', '9.3.0')),
|
||||
]
|
||||
|
||||
# Link to Arpack and OpenBLAS from EB
|
||||
local_makeopts = ' WITH_ARPACK=1 ARPACK_LIBS="-L$EBROOTARPACKMINNG/lib -larpack" ARPACK_NEEDS_LAPACK=1'
|
||||
# Use DFTD3 from EB
|
||||
local_makeopts += ' WITH_DFTD3=1 COMPILE_DFTD3=0 DFTD3_INCS="-I$EBROOTDFTD3MINLIB/include"'
|
||||
local_makeopts += ' DFTD3_LIBS="-L$EBROOTDFTD3MINLIB/lib -ldftd3"'
|
||||
|
||||
buildopts = local_makeopts
|
||||
|
||||
installopts = 'INSTALLDIR="%(installdir)s"'
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/' + x for x in ['dftb+', 'dp_bands', 'dp_dos', 'gen2cif', 'gen2xyz', 'makecube',
|
||||
'modes', 'repeatgen', 'straingen', 'waveplot', 'xyz2gen']],
|
||||
'dirs': ['lib/python%(pyshortver)s/site-packages']
|
||||
}
|
||||
|
||||
sanity_check_commands = [('python', '-c "import dptools"')]
|
||||
|
||||
modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'}
|
||||
|
||||
moduleclass = 'phys'
|
74
d/DFTB+/DFTB+-21.1-intel-2020b-Python-3.8.6.eb
Normal file
74
d/DFTB+/DFTB+-21.1-intel-2020b-Python-3.8.6.eb
Normal file
@ -0,0 +1,74 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'CMakeMake'
|
||||
|
||||
name = 'DFTB+'
|
||||
version = '21.1'
|
||||
versionsuffix = '-Python-%(pyver)s'
|
||||
|
||||
homepage = 'https://www.dftb-plus.info'
|
||||
description = """DFTB+ is a fast and efficient versatile quantum mechanical simulation package.
|
||||
It is based on the Density Functional Tight Binding (DFTB) method, containing
|
||||
almost all of the useful extensions which have been developed for the DFTB
|
||||
framework so far. Using DFTB+ you can carry out quantum mechanical simulations
|
||||
like with ab-initio density functional theory based packages, but in an
|
||||
approximate way gaining typically around two order of magnitude in speed."""
|
||||
|
||||
toolchain = {'name': 'intel', 'version': '2020b'}
|
||||
toolchainopts = {'lowopt': True, 'optarch': False}
|
||||
|
||||
local_external_dir = '%%(builddir)s/dftbplus-%%(version)s/external/%s/origin/'
|
||||
local_external_extract = 'mkdir -p %s && tar -C %s' % (local_external_dir, local_external_dir)
|
||||
local_external_extract += ' --strip-components=1 -xzf %%s'
|
||||
|
||||
sources = [
|
||||
{
|
||||
# DFTB+ source code
|
||||
'source_urls': ['https://github.com/dftbplus/dftbplus/archive'],
|
||||
'download_filename': '%(version)s.tar.gz',
|
||||
'filename': SOURCE_TAR_GZ,
|
||||
},
|
||||
{
|
||||
# Slater-Koster (slakos) data for testing
|
||||
'source_urls': ['https://github.com/dftbplus/testparams/archive'],
|
||||
'download_filename': 'd0ea16df2b56d14c7c3dc9329a8d3bac9fea50a0.tar.gz',
|
||||
'filename': 'slakos-data-%(version)s.tar.gz',
|
||||
'extract_cmd': local_external_extract % ('slakos', 'slakos'),
|
||||
},
|
||||
]
|
||||
|
||||
builddependencies = [
|
||||
('CMake', '3.18.4'),
|
||||
]
|
||||
|
||||
dependencies = [
|
||||
('Python', '3.8.6'),
|
||||
('SciPy-bundle', '2020.03', versionsuffix),
|
||||
('arpack-ng', '3.8.0'),
|
||||
('dftd3-lib', '0.9.2', '', ('GCC', '10.2.0')),
|
||||
]
|
||||
|
||||
# Link to Arpack
|
||||
local_makeopts = ' WITH_ARPACK=1 ARPACK_LIBS="-L$EBROOTARPACKMINNG/lib -larpack" ARPACK_NEEDS_LAPACK=1'
|
||||
# Use DFTD3 from EB
|
||||
local_makeopts += ' WITH_DFTD3=1 COMPILE_DFTD3=0 DFTD3_INCS="-I$EBROOTDFTD3MINLIB/include"'
|
||||
local_makeopts += ' DFTD3_LIBS="-L$EBROOTDFTD3MINLIB/lib -ldftd3"'
|
||||
|
||||
buildopts = local_makeopts
|
||||
|
||||
#runtest = 'test' + local_makeopts
|
||||
|
||||
installopts = 'INSTALLDIR="%(installdir)s"'
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/' + x for x in ['dftb+', 'dp_bands', 'dp_dos', 'gen2cif', 'gen2xyz', 'makecube',
|
||||
'modes', 'repeatgen', 'straingen', 'waveplot', 'xyz2gen']],
|
||||
'dirs': ['lib/python%(pyshortver)s/site-packages']
|
||||
}
|
||||
|
||||
sanity_check_commands = [('python', '-c "import dptools"')]
|
||||
|
||||
modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'}
|
||||
|
||||
moduleclass = 'phys'
|
133
d/DFTB+/config.cmake-MANUAL-INSTALATION.patch
Normal file
133
d/DFTB+/config.cmake-MANUAL-INSTALATION.patch
Normal file
@ -0,0 +1,133 @@
|
||||
#
|
||||
# Global architecture independent build settings
|
||||
#
|
||||
|
||||
#set(CMAKE_BUILD_TYPE "Debug" CACHE STRING "Build type (Release|RelWithDebInfo|Debug|MinSizeRel)")
|
||||
# CMAKE_BUILD_TYPE is commented out in order to allow for multi-configuration builds. It will
|
||||
# automatically default to RelWithDebInfo if used in a single configuration build. Uncomment or
|
||||
# override it only if you want a non-default single configuration build.
|
||||
|
||||
option(WITH_OMP "Whether OpenMP thread parallisation should be enabled" TRUE)
|
||||
|
||||
option(WITH_MPI "Whether DFTB+ should support MPI-parallelism" FALSE)
|
||||
# If you build an MPI-parallised binary, consider to set WITH_OMP (OpenMP thread parallelisaton) to
|
||||
# FALSE unless you want hybrid parallelisation (for experts only).
|
||||
|
||||
option(WITH_ELSI "Whether DFTB+ with MPI-parallelism should use the ELSI libraries" FALSE)
|
||||
# Works only with MPI-parallel build.
|
||||
|
||||
option(WITH_GPU "Whether DFTB+ should support GPU-acceleration via the MAGMA-library" FALSE)
|
||||
|
||||
option(WITH_TRANSPORT "Whether transport via libNEGF should be included." TRUE)
|
||||
# Works only when building static libraries (see option BUILD_SHARED_LIBS)
|
||||
|
||||
option(WITH_POISSON "Whether the Poisson-solver should be included" ${WITH_TRANSPORT})
|
||||
# The Poisson-solver is mostly used in transport calculations only. Enable this option
|
||||
# if you want to use it in a non-transport build. Note, the Poisson-solver is not
|
||||
# multi-instance safe and is therefore not allowed, if WITH_API (see below) is on.
|
||||
|
||||
option(WITH_SOCKETS "Whether socket communication should be allowed for" FALSE)
|
||||
|
||||
option(WITH_ARPACK "Whether the ARPACK library should be included (needed for TD-DFTB)" TRUE)
|
||||
# Works only with non-MPI (serial) build, needed for Casida linear response
|
||||
|
||||
option(WITH_DFTD3 "Whether the DFTD3 library should be included" TRUE)
|
||||
# NOTE: Due to the license of the DFTD3 library, the combined code must be distributed under the
|
||||
# GPLv3 license (as opposed to the LGPLv3 license of the DFTB+ package)
|
||||
|
||||
option(WITH_MBD "Whether DFTB+ should be built with many-body-dispersion support" FALSE)
|
||||
|
||||
option(WITH_PLUMED "Whether metadynamics via the PLUMED2 library should be allowed for" FALSE)
|
||||
|
||||
option(WITH_API "Whether public API should be included and the DFTB+ library installed" FALSE)
|
||||
# Turn this on, if you want to use the DFTB+ library to integrate DFTB+ into other software
|
||||
# packages. (Otherwise only a stripped down version of the library without the public API is built.)
|
||||
# This will also install necessary include and module files and further libraries needed to link the
|
||||
# DFTB+ library.
|
||||
|
||||
option(INSTANCE_SAFE_BUILD "Whether build should support concurrent DFTB+ instances" FALSE)
|
||||
# Turn this on, if you want to create multiple concurrent DFTB+ instances **within one process** via
|
||||
# the API. This option will ensure that only components without writable global variables are
|
||||
# included in the build, so that multiple instances can safely coexist. There are components
|
||||
# (e.g. Poisson, DFTD-D3, ARPACK) which can not be included if this option is on. Note, this option
|
||||
# is not relevant for the standalone DFTB+ binary, only for the API (if WITH_API had been turned
|
||||
# on).
|
||||
|
||||
option(WITH_PYTHON "Whether the Python components of DFTB+ should be tested and installed" TRUE)
|
||||
|
||||
option(BUILD_SHARED_LIBS "Whether the libraries built should be shared" FALSE)
|
||||
# Turn this on, if the DFTB+ library (and other compiled libraries) should be shared libraries and
|
||||
# dynamically linked to their applications. This results in smaller applications, but the libraries
|
||||
# must be present at run-time (and the correct LD_LIBRARY_PATH environment variable must be set, so
|
||||
# that they can be found by the operating system). If you want use the DFTB+ library from other
|
||||
# software packages (see WITH_API option above), they may also require a shared library (e.g.
|
||||
# calling DFTB+ functions from Python or Julia).
|
||||
|
||||
|
||||
#
|
||||
# Test environment settings
|
||||
#
|
||||
set(TEST_MPI_PROCS "1" CACHE STRING "Nr. of MPI processes used for testing")
|
||||
|
||||
set(TEST_OMP_THREADS "1" CACHE STRING "Nr. of OpenMP-threads used for testing")
|
||||
|
||||
# Command line used to launch the test code.
|
||||
# The escaped variables (\${VARIABLE}) will be substituted by the corresponding CMake variables.
|
||||
if(WITH_MPI)
|
||||
set(TEST_RUNNER_TEMPLATE "env OMP_NUM_THREADS=\${TEST_OMP_THREADS} mpiexec -n \${TEST_MPI_PROCS}"
|
||||
CACHE STRING "How to run the tests")
|
||||
else()
|
||||
set(TEST_RUNNER_TEMPLATE "env OMP_NUM_THREADS=\${TEST_OMP_THREADS}" CACHE STRING
|
||||
"How to run the tests")
|
||||
set(MODES_RUNNER_TEMPLATE "env OMP_NUM_THREADS=\${TEST_OMP_THREADS}" CACHE STRING
|
||||
"How to run the modes code for tests")
|
||||
endif()
|
||||
|
||||
# Turn it on to include the unit tests (needes FyTest)
|
||||
option(WITH_UNIT_TESTS "Whether the unit tests should be built" FALSE)
|
||||
|
||||
|
||||
#
|
||||
# Installation options
|
||||
#
|
||||
set(CMAKE_INSTALL_PREFIX "${CMAKE_BINARY_DIR}/_install" CACHE STRING
|
||||
"Directory to install the compiled code into")
|
||||
|
||||
set(INSTALL_INCLUDEDIR "dftbplus" CACHE PATH
|
||||
"Name of the project specific sub-folder within the install folder for include files")
|
||||
|
||||
set(INSTALL_MODULEDIR "${INSTALL_INCLUDEDIR}/modfiles" CACHE PATH
|
||||
"Installation directory for Fortran module files (within the install folder for include files)")
|
||||
|
||||
set(PKGCONFIG_LANGUAGE "Fortran" CACHE STRING
|
||||
"Compiler and Linker language to assume when creating the pkg-config export file (C or Fortran)")
|
||||
# The pkg-config export file (lib/pkgconfig/dftbplus.pc) contains the compiler and linker options
|
||||
# needed to link the DFTB+ library to an application. (It can be queried with the pkg-config tool.)
|
||||
# Depending on the language setting ("C" or "Fortran") you would get the flags for the case of using
|
||||
# that compiler for the linking.
|
||||
|
||||
|
||||
#
|
||||
# Advanced options (e.g. for developers and packagers)
|
||||
#
|
||||
|
||||
#set(TOOLCHAIN "gnu" CACHE STRING "Prefix of the toolchain file to be read from the sys/ folder")
|
||||
# Uncomment and set it if you want to override the automatic, compiler based toolchain file
|
||||
# selection.
|
||||
|
||||
|
||||
set(HYBRID_CONFIG_METHODS "Submodule;Find;Fetch" CACHE STRING
|
||||
"Configuration methods to try in order to satisfy hybrid dependencies")
|
||||
#
|
||||
# This list can be used to control how hybrid dependencies (external dependencies which can
|
||||
# optionally be built during the build process) are configured. The listed methods are applied in
|
||||
# the specified order. Following methods are available:
|
||||
#
|
||||
# Submodule: Use the source in external/*/origin and build the dependency as part of the build
|
||||
# process. If the source is not present, try to retrieve it via the 'git submodule' command
|
||||
# (provided the source tree is a git repository and git is available)
|
||||
#
|
||||
# Find: Find the dependency as an already installed package in the system.
|
||||
#
|
||||
# Fetch: Fetch the source into the build folder and build the dependency as part of the build
|
||||
# process (works also in cases where the source tree is not a Git repository)
|
38
d/dftd3-lib/dftd3-lib-0.9.2-GCC-10.2.0.eb
Normal file
38
d/dftd3-lib/dftd3-lib-0.9.2-GCC-10.2.0.eb
Normal file
@ -0,0 +1,38 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'MakeCp'
|
||||
|
||||
name = 'dftd3-lib'
|
||||
version = '0.9.2'
|
||||
|
||||
homepage = 'https://github.com/dftbplus/dftd3-lib'
|
||||
description = """This is a repackaged version of the DFTD3 program by S. Grimme and his coworkers.
|
||||
The original program (V3.1 Rev 1) was downloaded at 2016-04-03. It has been
|
||||
converted to free format and encapsulated into modules."""
|
||||
|
||||
toolchain = {'name': 'GCC', 'version': '10.2.0'}
|
||||
toolchainopts = {'pic': True}
|
||||
|
||||
github_account = 'dftbplus'
|
||||
source_urls = [GITHUB_SOURCE]
|
||||
sources = ['%(version)s.tar.gz']
|
||||
patches = ['dftd3-lib-%(version)s_fix-extras-syntax.patch']
|
||||
|
||||
parallel = 1
|
||||
|
||||
buildopts = 'FC="$FC" FCFLAGS="$FCFLAGS" LNFLAGS="$LDFLAGS"'
|
||||
|
||||
files_to_copy = [
|
||||
(['prg/dftd3', 'test/testapi'], 'bin'),
|
||||
(['lib/libdftd3.a'], 'lib'),
|
||||
(['lib/*.mod', 'prg/*.mod'], 'include'),
|
||||
(['doc/man.pdf', 'CHANGELOG.rst', 'LICENSE', 'README.rst'], 'share'),
|
||||
]
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/dftd3', 'bin/testapi', 'lib/libdftd3.a'],
|
||||
'dirs': ['include', 'share'],
|
||||
}
|
||||
|
||||
moduleclass = 'chem'
|
22
d/dftd3-lib/dftd3-lib-0.9.2_fix-extras-syntax.patch
Normal file
22
d/dftd3-lib/dftd3-lib-0.9.2_fix-extras-syntax.patch
Normal file
@ -0,0 +1,22 @@
|
||||
Fix syntax of extras.f90
|
||||
Author: Alex Domingo (Vrije Universiteit Brussel)
|
||||
--- prg/extras.f90.orig 2020-04-07 15:53:37.579346000 +0200
|
||||
+++ prg/extras.f90 2020-04-07 15:53:47.270025090 +0200
|
||||
@@ -285,7 +285,7 @@
|
||||
close(11)
|
||||
|
||||
write(*,*) 'checksum (Edisp) ',check
|
||||
- if (abs(check-etot).gt.1.d-3)stop'something is weired in adisp'
|
||||
+ if (abs(check-etot).gt.1.d-3) stop 'something is weired in adisp'
|
||||
|
||||
inquire(file='fragment',exist=ex)
|
||||
if (.not.ex) return
|
||||
@@ -1746,7 +1746,7 @@
|
||||
close(11)
|
||||
|
||||
write(*,*) 'checksum (Edisp) ',check
|
||||
- if (abs(check-etot).gt.1.d-3)stop'something is weired in adisp'
|
||||
+ if (abs(check-etot).gt.1.d-3) stop 'something is weired in adisp'
|
||||
|
||||
deallocate(dist,li)
|
||||
return
|
28
e/ELPA/ELPA-2019.11.001-intel-2020b.eb
Normal file
28
e/ELPA/ELPA-2019.11.001-intel-2020b.eb
Normal file
@ -0,0 +1,28 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
name = 'ELPA'
|
||||
version = '2019.11.001'
|
||||
|
||||
homepage = 'http://elpa.rzg.mpg.de'
|
||||
description = """Eigenvalue SoLvers for Petaflop-Applications ."""
|
||||
|
||||
toolchain = {'name': 'intel', 'version': '2020b'}
|
||||
toolchainopts = {'openmp': True, 'usempi': True}
|
||||
|
||||
source_urls = ['http://elpa.mpcdf.mpg.de/html/Releases/%(version)s/']
|
||||
sources = [SOURCELOWER_TAR_GZ]
|
||||
|
||||
preconfigopts = "export FC='mpiifort' && "
|
||||
preconfigopts += "export CC='mpicc' && "
|
||||
preconfigopts += 'export FCFLAGS="-O3 -xAVX2" && '
|
||||
preconfigopts += 'export CFLAGS="-O3 -march=native -mavx2 -mfma -funsafe-loop-optimizations -funsafe-math-optimizations -ftree-vect-loop-version -ftree-vectorize" && '
|
||||
preconfigopts += 'export SCALAPACK_LDFLAG=S"-L$MKLROOT/lib/intel64 -lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmkl_blacs_intelmpi_lp64 -lpthread " && '
|
||||
preconfigopts += 'export SCALAPACK_FCFLAGS="-I$MKL_HOME/include/intel64/lp64" && '
|
||||
configopts = '--enable-option-checking=fatal'
|
||||
|
||||
builddependencies = [
|
||||
('Autotools', '20200321'),
|
||||
]
|
||||
|
||||
moduleclass = 'math'
|
59
g/GDRCopy/GDRCopy-2.1-NVHPC-21.2-CUDA-11.2.0.eb
Normal file
59
g/GDRCopy/GDRCopy-2.1-NVHPC-21.2-CUDA-11.2.0.eb
Normal file
@ -0,0 +1,59 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'GDRCopy'
|
||||
version = '2.1'
|
||||
versionsuffix = '-CUDA-11.2.0'
|
||||
|
||||
homepage = 'https://github.com/NVIDIA/gdrcopy'
|
||||
description = "A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology."
|
||||
|
||||
toolchain = {'name': 'NVHPC', 'version': '21.2'}
|
||||
toolchainopts = {'pic': True}
|
||||
|
||||
github_account = 'NVIDIA'
|
||||
source_urls = [GITHUB_SOURCE]
|
||||
sources = ['v%(version)s.tar.gz']
|
||||
checksums = ['cecc7dcc071107f77396f5553c9109790b6d2298ae29eb2dbbdd52b2a213e4ea']
|
||||
|
||||
builddependencies = [
|
||||
('Autotools', '20200321'),
|
||||
('pkg-config', '0.29.2'),
|
||||
]
|
||||
|
||||
dependencies = [
|
||||
('Check', '0.15.2'),
|
||||
('CUDAcore', '11.2.0', '', True),
|
||||
]
|
||||
|
||||
# This easyconfig only installs the library and binaries of GDRCopy. Please
|
||||
# keep in mind that GDRCopy also needs the following kernel modules at runtime:
|
||||
#
|
||||
# 1. Kernel module for GDRCopy: improves Host to GPU communication
|
||||
# https://github.com/NVIDIA/gdrcopy
|
||||
# RPM: 'gdrcopy-kmod', DEB: 'gdrdrv-dkms'
|
||||
# Requirements: version of GDRCopy kernel module (gdrdrv.ko) >= 2.0
|
||||
#
|
||||
# 2. (optional) Kernel module for GPUDirect RDMA: improves GPU to GPU communication
|
||||
# https://github.com/Mellanox/nv_peer_memory
|
||||
# RPM: 'nvidia_peer_memory'
|
||||
# Requirements: Mellanox HCA with MLNX_OFED 2.1
|
||||
#
|
||||
# These kernel modules are not listed as system dependencies to lower the system
|
||||
# requirements to build this easyconfig, as they are not needed for the build.
|
||||
|
||||
skipsteps = ['configure']
|
||||
|
||||
local_envopts = "PREFIX=%(installdir)s CUDA=$EBROOTCUDACORE"
|
||||
prebuildopts = "PATH=$PATH:/sbin " # ensures that ldconfig is found
|
||||
buildopts = "config lib exes %s" % local_envopts
|
||||
installopts = local_envopts
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/copybw', 'bin/copylat', 'bin/sanity', 'lib/libgdrapi.%s' % SHLIB_EXT],
|
||||
'dirs': ['include'],
|
||||
}
|
||||
|
||||
moduleclass = 'lib'
|
59
g/GDRCopy/GDRCopy-2.1-NVHPC-21.2-CUDA-11.2.2.eb
Normal file
59
g/GDRCopy/GDRCopy-2.1-NVHPC-21.2-CUDA-11.2.2.eb
Normal file
@ -0,0 +1,59 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'GDRCopy'
|
||||
version = '2.1'
|
||||
versionsuffix = '-CUDA-11.2.2'
|
||||
|
||||
homepage = 'https://github.com/NVIDIA/gdrcopy'
|
||||
description = "A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology."
|
||||
|
||||
toolchain = {'name': 'NVHPC', 'version': '21.2'}
|
||||
toolchainopts = {'pic': True}
|
||||
|
||||
github_account = 'NVIDIA'
|
||||
source_urls = [GITHUB_SOURCE]
|
||||
sources = ['v%(version)s.tar.gz']
|
||||
checksums = ['cecc7dcc071107f77396f5553c9109790b6d2298ae29eb2dbbdd52b2a213e4ea']
|
||||
|
||||
builddependencies = [
|
||||
('Autotools', '20200321'),
|
||||
('pkg-config', '0.29.2'),
|
||||
]
|
||||
|
||||
dependencies = [
|
||||
('Check', '0.15.2'),
|
||||
('CUDAcore', '11.2.2', '', True),
|
||||
]
|
||||
|
||||
# This easyconfig only installs the library and binaries of GDRCopy. Please
|
||||
# keep in mind that GDRCopy also needs the following kernel modules at runtime:
|
||||
#
|
||||
# 1. Kernel module for GDRCopy: improves Host to GPU communication
|
||||
# https://github.com/NVIDIA/gdrcopy
|
||||
# RPM: 'gdrcopy-kmod', DEB: 'gdrdrv-dkms'
|
||||
# Requirements: version of GDRCopy kernel module (gdrdrv.ko) >= 2.0
|
||||
#
|
||||
# 2. (optional) Kernel module for GPUDirect RDMA: improves GPU to GPU communication
|
||||
# https://github.com/Mellanox/nv_peer_memory
|
||||
# RPM: 'nvidia_peer_memory'
|
||||
# Requirements: Mellanox HCA with MLNX_OFED 2.1
|
||||
#
|
||||
# These kernel modules are not listed as system dependencies to lower the system
|
||||
# requirements to build this easyconfig, as they are not needed for the build.
|
||||
|
||||
skipsteps = ['configure']
|
||||
|
||||
local_envopts = "PREFIX=%(installdir)s CUDA=$EBROOTCUDACORE"
|
||||
prebuildopts = "PATH=$PATH:/sbin " # ensures that ldconfig is found
|
||||
buildopts = "config lib exes %s" % local_envopts
|
||||
installopts = local_envopts
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/copybw', 'bin/copylat', 'bin/sanity', 'lib/libgdrapi.%s' % SHLIB_EXT],
|
||||
'dirs': ['include'],
|
||||
}
|
||||
|
||||
moduleclass = 'lib'
|
59
g/GDRCopy/GDRCopy-2.1-NVHPC-21.2-CUDA-11.3.0.eb
Normal file
59
g/GDRCopy/GDRCopy-2.1-NVHPC-21.2-CUDA-11.3.0.eb
Normal file
@ -0,0 +1,59 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'GDRCopy'
|
||||
version = '2.1'
|
||||
versionsuffix = '-CUDA-11.3.0'
|
||||
|
||||
homepage = 'https://github.com/NVIDIA/gdrcopy'
|
||||
description = "A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology."
|
||||
|
||||
toolchain = {'name': 'NVHPC', 'version': '21.2'}
|
||||
toolchainopts = {'pic': True}
|
||||
|
||||
github_account = 'NVIDIA'
|
||||
source_urls = [GITHUB_SOURCE]
|
||||
sources = ['v%(version)s.tar.gz']
|
||||
checksums = ['cecc7dcc071107f77396f5553c9109790b6d2298ae29eb2dbbdd52b2a213e4ea']
|
||||
|
||||
builddependencies = [
|
||||
('Autotools', '20200321'),
|
||||
('pkg-config', '0.29.2'),
|
||||
]
|
||||
|
||||
dependencies = [
|
||||
('Check', '0.15.2'),
|
||||
('CUDAcore', '11.3.0', '', True),
|
||||
]
|
||||
|
||||
# This easyconfig only installs the library and binaries of GDRCopy. Please
|
||||
# keep in mind that GDRCopy also needs the following kernel modules at runtime:
|
||||
#
|
||||
# 1. Kernel module for GDRCopy: improves Host to GPU communication
|
||||
# https://github.com/NVIDIA/gdrcopy
|
||||
# RPM: 'gdrcopy-kmod', DEB: 'gdrdrv-dkms'
|
||||
# Requirements: version of GDRCopy kernel module (gdrdrv.ko) >= 2.0
|
||||
#
|
||||
# 2. (optional) Kernel module for GPUDirect RDMA: improves GPU to GPU communication
|
||||
# https://github.com/Mellanox/nv_peer_memory
|
||||
# RPM: 'nvidia_peer_memory'
|
||||
# Requirements: Mellanox HCA with MLNX_OFED 2.1
|
||||
#
|
||||
# These kernel modules are not listed as system dependencies to lower the system
|
||||
# requirements to build this easyconfig, as they are not needed for the build.
|
||||
|
||||
skipsteps = ['configure']
|
||||
|
||||
local_envopts = "PREFIX=%(installdir)s CUDA=$EBROOTCUDACORE"
|
||||
prebuildopts = "PATH=$PATH:/sbin " # ensures that ldconfig is found
|
||||
buildopts = "config lib exes %s" % local_envopts
|
||||
installopts = local_envopts
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/copybw', 'bin/copylat', 'bin/sanity', 'lib/libgdrapi.%s' % SHLIB_EXT],
|
||||
'dirs': ['include'],
|
||||
}
|
||||
|
||||
moduleclass = 'lib'
|
29
g/git/git-2.31.1.eb
Normal file
29
g/git/git-2.31.1.eb
Normal file
@ -0,0 +1,29 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'git'
|
||||
version = "2.31.1"
|
||||
|
||||
homepage = 'http://git-scm.com/'
|
||||
description = """Git is a free and open source distributed version control system designed
|
||||
to handle everything from small to very large projects with speed and efficiency."""
|
||||
|
||||
toolchain = SYSTEM
|
||||
|
||||
source_urls = ['https://www.kernel.org/pub/software/scm/git/']
|
||||
sources = ['%(name)s-%(version)s.tar.gz']
|
||||
|
||||
builddependencies = [
|
||||
('Autoconf', '2.69', '', True)
|
||||
]
|
||||
|
||||
preconfigopts = 'make configure && '
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/git'],
|
||||
'dirs': [],
|
||||
}
|
||||
|
||||
moduleclass = 'tools'
|
31
h/HDF5/HDF5-1.10.6-iimpi-2020a.eb
Normal file
31
h/HDF5/HDF5-1.10.6-iimpi-2020a.eb
Normal file
@ -0,0 +1,31 @@
|
||||
# IT4Innpvations 2021
|
||||
# LK
|
||||
|
||||
name = 'HDF5'
|
||||
version = '1.10.6'
|
||||
|
||||
homepage = 'https://portal.hdfgroup.org/display/support'
|
||||
description = """HDF5 is a data model, library, and file format for storing and managing data.
|
||||
It supports an unlimited variety of datatypes, and is designed for flexible
|
||||
and efficient I/O and for high volume and complex data."""
|
||||
|
||||
toolchain = {'name': 'iimpi', 'version': '2020a'}
|
||||
toolchainopts = {'pic': True, 'usempi': True}
|
||||
|
||||
source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src']
|
||||
sources = [SOURCELOWER_TAR_GZ]
|
||||
checksums = ['5f9a3ee85db4ea1d3b1fa9159352aebc2af72732fc2f58c96a3f0768dba0e9aa']
|
||||
|
||||
dependencies = [
|
||||
('zlib', '1.2.11'),
|
||||
('Szip', '2.1.1'),
|
||||
]
|
||||
|
||||
# AMD/intel cpu
|
||||
import os
|
||||
if os.environ.get("CLUSTERNAME") in ["KAROLINA"]:
|
||||
prebuildopts = "echo %(builddir)s && while read i; do echo $i; sed 's|-xHost|-avx2|g' -i $i; done < <(grep xHost %(builddir)s -R | cut -d ':' -f 1 | sort -u) && "
|
||||
|
||||
configopts = '--enable-fortran --enable-fortran 2003 --enable-cxx'
|
||||
|
||||
moduleclass = 'data'
|
24
h/HDF5/HDF5-1.10.6-iimpi-2020b.eb
Normal file
24
h/HDF5/HDF5-1.10.6-iimpi-2020b.eb
Normal file
@ -0,0 +1,24 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
name = 'HDF5'
|
||||
version = '1.10.6'
|
||||
|
||||
homepage = 'https://portal.hdfgroup.org/display/support'
|
||||
description = """HDF5 is a data model, library, and file format for storing and managing data.
|
||||
It supports an unlimited variety of datatypes, and is designed for flexible
|
||||
and efficient I/O and for high volume and complex data."""
|
||||
|
||||
toolchain = {'name': 'iimpi', 'version': '2020b'}
|
||||
toolchainopts = {'pic': True, 'usempi': True}
|
||||
|
||||
source_urls = ['https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src']
|
||||
sources = [SOURCELOWER_TAR_GZ]
|
||||
checksums = ['5f9a3ee85db4ea1d3b1fa9159352aebc2af72732fc2f58c96a3f0768dba0e9aa']
|
||||
|
||||
dependencies = [
|
||||
('zlib', '1.2.11'),
|
||||
('Szip', '2.1.1'),
|
||||
]
|
||||
|
||||
moduleclass = 'data'
|
@ -15,6 +15,11 @@ source_urls = [
|
||||
'https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version_major_minor)s/hdf5-%(version)s/src']
|
||||
sources = [SOURCELOWER_TAR_GZ]
|
||||
|
||||
# AMD/intel cpu
|
||||
import os
|
||||
if os.environ.get("CLUSTERNAME") in ["KAROLINA"]:
|
||||
prebuildopts = "echo %(builddir)s && while read i; do echo $i; sed 's|-xHost|-avx2|g' -i $i; done < <(grep xHost %(builddir)s -R | cut -d ':' -f 1 | sort -u) && "
|
||||
|
||||
configopts = '--enable-fortran --enable-fortran 2003 --enable-cxx'
|
||||
|
||||
dependencies = [
|
||||
|
@ -19,6 +19,11 @@ dependencies = [
|
||||
('Szip', '2.1.1'),
|
||||
]
|
||||
|
||||
configopts = '--enable-fortran --enable-fortran 2003 --enable-fortran2003 --enable-cxx'
|
||||
configopts = '--enable-fortran --enable-fortran 2003 --enable-fortran2003 --enable-cxx '
|
||||
|
||||
# AMD/intel cpu
|
||||
import os
|
||||
if os.environ.get("CLUSTERNAME") in ["KAROLINA"]:
|
||||
prebuildopts = "echo %(builddir)s && while read i; do echo $i; sed 's|-xHost|-avx2|g' -i $i; done < <(grep xHost %(builddir)s -R | cut -d ':' -f 1 | sort -u) && "
|
||||
|
||||
moduleclass = 'data'
|
||||
|
40
h/h5py/h5py-2.10.0-intel-2020b-Python-3.8.6.eb
Normal file
40
h/h5py/h5py-2.10.0-intel-2020b-Python-3.8.6.eb
Normal file
@ -0,0 +1,40 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'PythonPackage'
|
||||
|
||||
name = 'h5py'
|
||||
version = '2.10.0'
|
||||
versionsuffix = '-Python-%(pyver)s'
|
||||
|
||||
homepage = 'https://www.h5py.org/'
|
||||
description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library,
|
||||
version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous
|
||||
amounts of data."""
|
||||
|
||||
toolchain = {'name': 'intel', 'version': '2020b'}
|
||||
toolchainopts = {'usempi': True}
|
||||
|
||||
source_urls = [PYPI_SOURCE]
|
||||
sources = [SOURCE_TAR_GZ]
|
||||
#patches = ['h5py-%(version)s_avoid-mpi-init.patch']
|
||||
#checksums = [
|
||||
# '84412798925dc870ffd7107f045d7659e60f5d46d1c70c700375248bf6bf512d', # h5py-2.10.0.tar.gz
|
||||
# '6bacb71f5d9fbd7bd9a01018d7fe21b067a2317f33c4a7c21fde9cd404c1603f', # h5py-2.10.0_avoid-mpi-init.patch
|
||||
#]
|
||||
|
||||
builddependencies = [('pkgconfig', '1.5.1', versionsuffix)]
|
||||
|
||||
dependencies = [
|
||||
('Python', '3.8.6'),
|
||||
('SciPy-bundle', '2020.03', versionsuffix),
|
||||
('HDF5', '1.10.6', '', ('iimpi', '2020b')),
|
||||
]
|
||||
|
||||
use_pip = False
|
||||
download_dep_fail = True
|
||||
|
||||
# to really use mpi enabled hdf5 we now seem to need a configure step, which is the reason we can't use pip
|
||||
prebuildopts = 'python setup.py configure --mpi --hdf5=$EBROOTHDF5 && '
|
||||
|
||||
moduleclass = 'data'
|
25
h/hypothesis/hypothesis-6.13.1-GCC-10.2.0.eb
Normal file
25
h/hypothesis/hypothesis-6.13.1-GCC-10.2.0.eb
Normal file
@ -0,0 +1,25 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'PythonPackage'
|
||||
|
||||
name = 'hypothesis'
|
||||
version = '6.13.1'
|
||||
|
||||
homepage = "https://github.com/HypothesisWorks/hypothesis"
|
||||
description = """Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized
|
||||
by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets
|
||||
you find more bugs in your code with less work."""
|
||||
|
||||
toolchain = {'name': 'GCC', 'version': '10.2.0'}
|
||||
|
||||
sources = [SOURCE_TAR_GZ]
|
||||
checksums = ['074e27e514b305ba0b0c6bc0037faad1abbe2ea641ab4a8ec90e12a5e3238009']
|
||||
|
||||
dependencies = [('Python', '3.8.6')]
|
||||
|
||||
use_pip = True
|
||||
download_dep_fail = True
|
||||
sanity_pip_check = True
|
||||
|
||||
moduleclass = 'tools'
|
20
i/iimpi/iimpi-2020a.eb
Normal file
20
i/iimpi/iimpi-2020a.eb
Normal file
@ -0,0 +1,20 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'Toolchain'
|
||||
|
||||
name = 'iimpi'
|
||||
version = '2020a'
|
||||
|
||||
homepage = 'https://software.intel.com/parallel-studio-xe'
|
||||
description = """Intel C/C++ and Fortran compilers, alongside Intel MPI."""
|
||||
|
||||
toolchain = SYSTEM
|
||||
|
||||
local_compver = '2020.1.217'
|
||||
dependencies = [
|
||||
('iccifort', local_compver),
|
||||
('impi', '2019.9.304', '', ('iccifort', local_compver)),
|
||||
]
|
||||
|
||||
moduleclass = 'toolchain'
|
@ -0,0 +1,38 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
name = 'impi'
|
||||
version = '2018.4.274'
|
||||
|
||||
homepage = 'https://software.intel.com/en-us/intel-mpi-library/'
|
||||
description = "Intel MPI Library, compatible with MPICH ABI"
|
||||
|
||||
toolchain = {'name': 'iccifort', 'version': '2019.1.144-GCC-8.2.0-2.31.1'}
|
||||
|
||||
source_urls = ['https://registrationcenter-download.intel.com/akdlm/irc_nas/tec/13651/']
|
||||
sources = ['l_mpi_%(version)s.tgz']
|
||||
checksums = ['a1114b3eb4149c2f108964b83cad02150d619e50032059d119ac4ffc9d5dd8e0']
|
||||
|
||||
dontcreateinstalldir = True
|
||||
|
||||
components = ['intel-mpi', 'intel-psxe', 'intel-imb']
|
||||
|
||||
dependencies = [
|
||||
# needed by libfabric provider MLX introduced in Intel MPI v2019.6,
|
||||
# https://software.intel.com/en-us/articles/improve-performance-and-stability-with-intel-mpi-library-on-infiniband
|
||||
('UCX', '1.9.0'),
|
||||
]
|
||||
|
||||
# set up all the mpi commands to default to intel compilers
|
||||
# set_mpi_wrappers_all = True
|
||||
|
||||
postinstallcmds = [
|
||||
'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libmpich.so',
|
||||
'ln -s %(installdir)s/lib64/libmpigc4.so %(installdir)s/lib64/libmpichcxx.so',
|
||||
'ln -s %(installdir)s/lib64/libmpigf.so %(installdir)s/lib64/libfmpich.so',
|
||||
'ln -s %(installdir)s/lib64/libmpigf.so %(installdir)s/lib64/libmpichf90.so',
|
||||
'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libmpl.so',
|
||||
'ln -s %(installdir)s/lib64/libmpi.so %(installdir)s/lib64/libopa.so'
|
||||
]
|
||||
|
||||
moduleclass = 'mpi'
|
35
i/impi/impi-2019.9.304-iccifort-2020.1.217.eb
Normal file
35
i/impi/impi-2019.9.304-iccifort-2020.1.217.eb
Normal file
@ -0,0 +1,35 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
name = 'impi'
|
||||
version = '2019.9.304'
|
||||
|
||||
homepage = 'https://software.intel.com/en-us/intel-mpi-library/'
|
||||
description = "Intel MPI Library, compatible with MPICH ABI"
|
||||
|
||||
toolchain = {'name': 'iccifort', 'version': '2020.1.217'}
|
||||
|
||||
source_urls = ['https://registrationcenter-download.intel.com/akdlm/irc_nas/tec/17263/']
|
||||
sources = ['l_mpi_%(version)s.tgz']
|
||||
checksums = ['618a5dc2de54306645e6428c5eb7d267b54b11b5a83dfbcad7d0f9e0d90bb2e7']
|
||||
|
||||
dependencies = [
|
||||
# needed by libfabric provider MLX introduced in Intel MPI v2019.6,
|
||||
# https://software.intel.com/en-us/articles/improve-performance-and-stability-with-intel-mpi-library-on-infiniband
|
||||
('UCX', '1.9.0'),
|
||||
]
|
||||
|
||||
dontcreateinstalldir = True
|
||||
|
||||
components = ['intel-mpi', 'intel-psxe', 'intel-imb']
|
||||
|
||||
# set up all the mpi commands to default to intel compilers
|
||||
set_mpi_wrappers_all = True
|
||||
|
||||
import os
|
||||
if os.environ.get("CLUSTERNAME") in ["BARBORA"]:
|
||||
modextravars = {'I_MPI_OFI_PROVIDER': 'MLX',
|
||||
'FI_PROVIDER': 'verbs',
|
||||
}
|
||||
|
||||
moduleclass = 'mpi'
|
29
i/impi/impi-2021.2.0-intel-compilers-2021.2.0.eb
Normal file
29
i/impi/impi-2021.2.0-intel-compilers-2021.2.0.eb
Normal file
@ -0,0 +1,29 @@
|
||||
# IT4Innovatios 2021
|
||||
# LK
|
||||
|
||||
name = 'impi'
|
||||
version = '2021.2.0'
|
||||
|
||||
homepage = 'https://software.intel.com/content/www/us/en/develop/tools/mpi-library.html'
|
||||
description = "Intel MPI Library, compatible with MPICH ABI"
|
||||
|
||||
toolchain = {'name': 'intel-compilers', 'version': '2021.2.0'}
|
||||
|
||||
# see https://software.intel.com/content/www/us/en/develop/articles/oneapi-standalone-components.html
|
||||
source_urls = ['https://registrationcenter-download.intel.com/akdlm/irc_nas/17729/']
|
||||
sources = ['l_mpi_oneapi_p_%(version)s.215_offline.sh']
|
||||
checksums = ['d0d4cdd11edaff2e7285e38f537defccff38e37a3067c02f4af43a3629ad4aa3']
|
||||
|
||||
dependencies = [('UCX', '1.10.0')]
|
||||
|
||||
modextravars = {
|
||||
'I_MPI_OFI_PROVIDER': 'MLX',
|
||||
'FI_PROVIDER': 'verbs',
|
||||
'I_MPI_CC' : 'icc',
|
||||
'I_MPI_CXX': 'icpc',
|
||||
'I_MPI_F77': 'ifort',
|
||||
'I_MPI_F90': 'ifort',
|
||||
'I_MPI_FC': 'ifort',
|
||||
}
|
||||
|
||||
moduleclass = 'mpi'
|
45
i/intel-compilers/intel-compilers-2021.2.0.eb
Normal file
45
i/intel-compilers/intel-compilers-2021.2.0.eb
Normal file
@ -0,0 +1,45 @@
|
||||
# IT4Innovatios 2021
|
||||
# LK
|
||||
|
||||
name = 'intel-compilers'
|
||||
version = '2021.2.0'
|
||||
|
||||
homepage = 'https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html'
|
||||
description = "Intel C, C++ & Fortran compilers (classic and oneAPI)"
|
||||
|
||||
toolchain = SYSTEM
|
||||
|
||||
# see https://software.intel.com/content/www/us/en/develop/articles/oneapi-standalone-components.html
|
||||
sources = [
|
||||
{
|
||||
'source_urls': ['https://registrationcenter-download.intel.com/akdlm/irc_nas/17749/'],
|
||||
'filename': 'l_dpcpp-cpp-compiler_p_%(version)s.118_offline.sh',
|
||||
},
|
||||
{
|
||||
'source_urls': ['https://registrationcenter-download.intel.com/akdlm/irc_nas/17756/'],
|
||||
'filename': 'l_fortran-compiler_p_%(version)s.136_offline.sh',
|
||||
},
|
||||
]
|
||||
checksums = [
|
||||
# l_dpcpp-cpp-compiler_p_2021.2.0.118_offline.sh
|
||||
'5d01cbff1a574c3775510cd97ffddd27fdf56d06a6b0c89a826fb23da4336d59',
|
||||
'a62e04a80f6d2f05e67cd5acb03fa58857ee22c6bd581ec0651c0ccd5bdec5a1', # l_fortran-compiler_p_2021.2.0.136_offline.sh
|
||||
]
|
||||
|
||||
local_gccver = '10.3.0'
|
||||
dependencies = [
|
||||
('GCCcore', local_gccver),
|
||||
('binutils', '2.36.1', '', ('GCCcore', local_gccver)),
|
||||
]
|
||||
|
||||
modextravars = {
|
||||
'CC': 'icc',
|
||||
'CXX': 'icpc',
|
||||
'F90': 'ifort',
|
||||
'F77': 'ifort',
|
||||
'FC': 'ifort',
|
||||
'OPTFLAGS': '-O3 -xHost -ip',
|
||||
'DEBUGFLAGS': '-O0 -g'
|
||||
}
|
||||
|
||||
moduleclass = 'compiler'
|
24
i/intel/intel-2020a.eb
Normal file
24
i/intel/intel-2020a.eb
Normal file
@ -0,0 +1,24 @@
|
||||
# IT4Innovations
|
||||
# LK 2021
|
||||
|
||||
easyblock = 'Toolchain'
|
||||
|
||||
name = 'intel'
|
||||
version = '2020a'
|
||||
|
||||
homepage = 'https://easybuild.readthedocs.io/en/master/Common-toolchains.html#intel-toolchain'
|
||||
description = "Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL)."
|
||||
|
||||
toolchain = SYSTEM
|
||||
|
||||
local_compver = '2020.1.217'
|
||||
local_gccver = '9.3.0'
|
||||
dependencies = [
|
||||
('GCCcore', local_gccver),
|
||||
('binutils', '2.34', '', ('GCCcore', local_gccver)),
|
||||
('iccifort', local_compver),
|
||||
('impi', '2019.9.304', '', ('iccifort', local_compver)),
|
||||
('imkl', local_compver, '', ('iimpi', version)),
|
||||
]
|
||||
|
||||
moduleclass = 'toolchain'
|
26
l/libarchive/libarchive-3.4.3.eb
Normal file
26
l/libarchive/libarchive-3.4.3.eb
Normal file
@ -0,0 +1,26 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'libarchive'
|
||||
version = '3.4.3'
|
||||
|
||||
homepage = 'https://www.libarchive.org/'
|
||||
|
||||
description = """
|
||||
Multi-format archive and compression library
|
||||
"""
|
||||
|
||||
toolchain = SYSTEM
|
||||
|
||||
source_urls = ['https://www.libarchive.org/downloads/']
|
||||
sources = [SOURCE_TAR_GZ]
|
||||
checksums = ['ee1e749213c108cb60d53147f18c31a73d6717d7e3d2481c157e1b34c881ea39']
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['include/archive.h', 'lib/libarchive.%s' % SHLIB_EXT],
|
||||
'dirs': ['bin', 'share/man/man3'],
|
||||
}
|
||||
|
||||
moduleclass = 'tools'
|
30
m/MATLAB/MATLAB-2021a.eb
Normal file
30
m/MATLAB/MATLAB-2021a.eb
Normal file
@ -0,0 +1,30 @@
|
||||
# IT4Innovations
|
||||
# LK 2021
|
||||
|
||||
name = 'MATLAB'
|
||||
version = '2021a'
|
||||
|
||||
homepage = 'https://www.mathworks.com/products/matlab'
|
||||
description = """MATLAB is a high-level language and interactive environment
|
||||
that enables you to perform computationally intensive tasks faster than with
|
||||
traditional programming languages such as C, C++, and Fortran."""
|
||||
|
||||
toolchain = SYSTEM
|
||||
|
||||
sources = ['matlab-%(version)s.tar.gz']
|
||||
checksums = ['af53ba32e959c40071128e717a48495d']
|
||||
|
||||
java_options = '-Xmx2048m'
|
||||
|
||||
dependencies = [('Java', '1.8.0_221')]
|
||||
|
||||
# Use EB_MATLAB_KEY environment variable or uncomment and modify license key
|
||||
# key = '00000-00000-00000-00000-00000-00000-00000-00000-00000-00000-00000-00000'
|
||||
|
||||
# Use EB_MATLAB_LICENSE_SERVER and EB_MATLAB_LICENSE_SERVER_PORT environment variables or
|
||||
# uncomment and modify the following variables for installation with floating license server
|
||||
# license_file = 'my-license-file'
|
||||
# license_server = 'my-license-server'
|
||||
# license_server_port = '1234'
|
||||
|
||||
moduleclass = 'math'
|
36
m/MATLAB/README.md
Normal file
36
m/MATLAB/README.md
Normal file
@ -0,0 +1,36 @@
|
||||
This example uses Matlab 2018a and MATLAB-2018a.eb
|
||||
Steps to install Matlab:
|
||||
* Install the appropriate Java install which requires manual download. See Java documentation for install.
|
||||
* Matlab needs a "File Installation Key". There are a few options available:
|
||||
* Your Matlab license should have a "`File Installation Key`" in under "`Advanced Options`" in the "`Install and Activate`" tab of your "`License Center`".
|
||||
This will only install the products associated with this license.
|
||||
* If you need to install all of the toolboxes to support multiple licenses Mathworks can enable a "`All Product File Installation Key`".
|
||||
This will install all of the client products but will not install server products like MDCS.
|
||||
A second manual installation on top of the first will be required.
|
||||
* If you have a server product key, like MDCS, the "`File Installation Key`" may not install client products like Matlab Compilers.
|
||||
A second manual installation on top of the first will be required.
|
||||
* Edit the easyconfig file (`MATLAB-2018a.eb`).
|
||||
* Update the version of Java to match the version installed in step 1.
|
||||
* Add the following three lines
|
||||
```
|
||||
# This string could be really long
|
||||
key = 'XXXXX-XXXXX-XXXXX-XXXXX-XXXXX-XXXXX'
|
||||
license_server = '<IP or FQDN>'
|
||||
license_server_port = '<port>'
|
||||
```
|
||||
* Download both ISO files from Mathworks.
|
||||
* Create the tar file needed for install.
|
||||
```
|
||||
$ mkdir R2018a
|
||||
$ mount -o loop,ro R2018a_glnxa64_dvd1.iso /mnt/
|
||||
$ rsync -avHlP /mnt/ R2018a/
|
||||
$ umount /mnt
|
||||
$ mount -o loop,ro R2018a_glnxa64_dvd2.iso /mnt/
|
||||
$ rsync -avHlP /mnt/ R2018a/
|
||||
$ umount /mnt
|
||||
$ tar -zcvf /my/easybuild/download/path/matlab-2018a.tar.gz R2018a
|
||||
```
|
||||
* Install with EasyBuild
|
||||
```
|
||||
$ eb MATLAB-2018a.eb -r
|
||||
```
|
23
m/Molpro/Molpro-mpp-2021.1.0.linux_x86_64_openmp.eb
Normal file
23
m/Molpro/Molpro-mpp-2021.1.0.linux_x86_64_openmp.eb
Normal file
@ -0,0 +1,23 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
name = 'Molpro'
|
||||
version = '2021.1.0'
|
||||
versionprefix = 'mpp-'
|
||||
versionsuffix = '.linux_x86_64_openmp'
|
||||
|
||||
homepage = 'https://www.molpro.net'
|
||||
description = """Molpro is a local_complete system of ab initio programs for molecular electronic structure calculations."""
|
||||
|
||||
toolchain = SYSTEM
|
||||
|
||||
# no source URL available, requires registration to download
|
||||
sources = ['%(namelower)s-%(versionprefix)s%(version)s%(versionsuffix)s.sh']
|
||||
|
||||
precompiled_binaries = True
|
||||
|
||||
# license file - uncomment if a licence file is supplied by your site and
|
||||
# is valid for all users - the value of license_file may have to be changed
|
||||
# license_file = HOME + '/licenses/%(name)s/license.lic'
|
||||
|
||||
moduleclass = 'chem'
|
35
n/Newton-X/Newton-X-2.2-B09-intel-2020b.eb
Normal file
35
n/Newton-X/Newton-X-2.2-B09-intel-2020b.eb
Normal file
@ -0,0 +1,35 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'PackedBinary'
|
||||
|
||||
name = 'Newton-X'
|
||||
version = '2.2-B09'
|
||||
|
||||
homepage = 'https://sourceforge.net/projects/actc'
|
||||
description = "ACTC converts independent triangles into triangle strips or fans."
|
||||
|
||||
toolchain = {'name': 'intel', 'version': '2020b'}
|
||||
|
||||
#source_urls = [https://amubox.univ-amu.fr/s/aBMnEq7dXeZPm2H/download]
|
||||
sources = ['nx-2.2-b09.tgz']
|
||||
patches = ['newton-x-2.2.patch']
|
||||
|
||||
dependencies = [
|
||||
['GSL', '2.6'],
|
||||
]
|
||||
|
||||
install_cmd = 'NX-2.2-B09/install/installnx.pl ifort $EBROOTGSL %(installdir)s 0'
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': [ 'bin/tplot', 'bin/moldyn.pl', 'bin/plot', 'source/lib/nx_la.pm'],
|
||||
'dirs': ['bin', 'batch', 'docs', 'install', 'source', 'test-nx'],
|
||||
}
|
||||
|
||||
modextrapaths = {
|
||||
'NX': 'bin',
|
||||
'LIBRARY_PATH': 'source/lib',
|
||||
'LD_LIBRARY_PATH': 'source/lib'
|
||||
}
|
||||
|
||||
moduleclass = 'chem'
|
70
n/Newton-X/newton-x-2.2.patch
Normal file
70
n/Newton-X/newton-x-2.2.patch
Normal file
@ -0,0 +1,70 @@
|
||||
--- NX-2.2-B09/install/installnx.pl.orig 2020-03-06 12:35:13.000000000 +0100
|
||||
+++ NX-2.2-B09/install/installnx.pl 2021-06-08 07:41:44.615480573 +0200
|
||||
@@ -22,7 +22,7 @@
|
||||
|
||||
# 1) Select compiler
|
||||
#$comp = "ifort";
|
||||
- $comp = "gfortran";
|
||||
+ $comp = "$ARGV[0]";
|
||||
|
||||
# 2) Choose the BLAS/LAPACK variables (_OD will be used for cioverlap_od only)
|
||||
if($comp eq "ifort"){
|
||||
@@ -44,8 +44,8 @@
|
||||
}
|
||||
|
||||
# 3) Choose GSL paths:
|
||||
- $idgsl="/usr/include/gsl"; # Headers
|
||||
- $ldgsl="/usr/lib"; # Libraries
|
||||
+ $idgsl="$ARGV[1]/include/gsl"; # Headers
|
||||
+ $ldgsl="$ARGV[1]/lib"; # Libraries
|
||||
|
||||
# 4) If necessary (usually it isn't), change the flags for the selected compiler (_OD will be used for cioverlap_od only)
|
||||
if ($comp eq "ifort"){
|
||||
@@ -98,13 +98,14 @@
|
||||
#================================================================
|
||||
#
|
||||
sub create_dir{
|
||||
- print STDOUT "\n Please enter directory for the NEWTON-X installation \n ";
|
||||
- $_ = <STDIN>;
|
||||
- chomp;$_ =~ s/^\s*//;$_ =~ s/\s*$//;
|
||||
- $instd = $_;
|
||||
+ #print STDOUT "\n Please enter directory for the NEWTON-X installation \n ";
|
||||
+ #$_ = <STDIN>;
|
||||
+ #chomp;$_ =~ s/^\s*//;$_ =~ s/\s*$//;
|
||||
+ $instd = $ARGV[2];
|
||||
|
||||
if (!-s $instd){
|
||||
- $create_d=simple_question("\n This directory seems not to exist - create it? (y/n) ","y");
|
||||
+ #$create_d=simple_question("\n This directory seems not to exist - create it? (y/n) ","y");
|
||||
+ $create_d = "y";
|
||||
if ($create_d eq "y"){
|
||||
system("mkdir -p $instd");
|
||||
if (-s $instd){
|
||||
@@ -140,7 +141,7 @@
|
||||
print STDOUT " [4] Time-dependent overlaps I (CIOVERLAP)\n";
|
||||
print STDOUT " [5] Time-dependent overlaps II (CIOVERLAP_OD)\n";
|
||||
print STDOUT " Enter comma separated list or dash separated range (<ENTER> for default): ";
|
||||
- $_=<STDIN>;
|
||||
+ $_=$ARGV[3];
|
||||
chomp;$_ =~ s/^\s*//;$_ =~ s/\s*$//;
|
||||
@list=make_num_sequence($_);
|
||||
if (($_ eq "") or ($_ eq "0")){
|
||||
@@ -358,12 +359,12 @@
|
||||
#
|
||||
sub copy_nx{
|
||||
print_STDOUT(" Copying files ");
|
||||
- copyfiles("$original_dir/../","source",$instd,1);
|
||||
- copyfiles("$original_dir/../","docs",$instd,1);
|
||||
- copyfiles("$original_dir/../","test-nx",$instd,1);
|
||||
- copyfiles("$original_dir/../","batch",$instd,1);
|
||||
- copyfiles("$original_dir/../","install",$instd,1);
|
||||
- copyfiles("$original_dir/../","README.install",$instd,1);
|
||||
+ copyfiles("$original_dir/NX-2.2-B09/","source",$instd,1);
|
||||
+ copyfiles("$original_dir/NX-2.2-B09/","docs",$instd,1);
|
||||
+ copyfiles("$original_dir/NX-2.2-B09/","test-nx",$instd,1);
|
||||
+ copyfiles("$original_dir/NX-2.2-B09/","batch",$instd,1);
|
||||
+ copyfiles("$original_dir/NX-2.2-B09/","install",$instd,1);
|
||||
+ copyfiles("$original_dir/NX-2.2-B09/","README.install",$instd,1);
|
||||
# Create bin directory
|
||||
if (!-e $bin){
|
||||
system("mkdir $bin");
|
32
o/OpenMPI/OpenMPI-4.0.5-NVHPC-21.2-CUDA-11.2.2.eb
Normal file
32
o/OpenMPI/OpenMPI-4.0.5-NVHPC-21.2-CUDA-11.2.2.eb
Normal file
@ -0,0 +1,32 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
name = 'OpenMPI'
|
||||
version = '4.0.5'
|
||||
versionsuffix = '-CUDA-11.2.2'
|
||||
|
||||
homepage = 'https://www.open-mpi.org/'
|
||||
description = """The Open MPI Project is an open source MPI-3 implementation."""
|
||||
|
||||
toolchain = {'name': 'NVHPC', 'version': '21.2'}
|
||||
|
||||
source_urls = ['https://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads']
|
||||
sources = [SOURCELOWER_TAR_GZ]
|
||||
|
||||
dependencies = [
|
||||
('UCX', '1.9.0', versionsuffix),
|
||||
('CUDAcore', '11.2.2', '', True),
|
||||
('GDRCopy', '2.1', versionsuffix),
|
||||
]
|
||||
|
||||
preconfigopts = 'export CC="pgcc -noswitcherror" && export CXX="pgc++ -noswitcherror" && export FC="pgfortran -noswitcherror" && '
|
||||
|
||||
configopts = '--enable-shared --enable-mpi-thread-multiple --with-verbs '
|
||||
configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support
|
||||
configopts += '--enable-mpirun-prefix-by-default '
|
||||
configopts += '--with-tm=/opt/pbs ' # Enable PBS
|
||||
configopts += '--enable-mpi-cxx ' # Enable building the C++ MPI bindings
|
||||
configopts += '--with-ucx=$EBROOTUCX '
|
||||
configopts += '--with-cuda=$EBROOTCUDACORE '
|
||||
|
||||
moduleclass = 'mpi'
|
32
o/OpenMPI/OpenMPI-4.0.5-NVHPC-21.2-CUDA-11.3.0.eb
Normal file
32
o/OpenMPI/OpenMPI-4.0.5-NVHPC-21.2-CUDA-11.3.0.eb
Normal file
@ -0,0 +1,32 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
name = 'OpenMPI'
|
||||
version = '4.0.5'
|
||||
versionsuffix = '-CUDA-11.3.0'
|
||||
|
||||
homepage = 'https://www.open-mpi.org/'
|
||||
description = """The Open MPI Project is an open source MPI-3 implementation."""
|
||||
|
||||
toolchain = {'name': 'NVHPC', 'version': '21.2'}
|
||||
|
||||
source_urls = ['https://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads']
|
||||
sources = [SOURCELOWER_TAR_GZ]
|
||||
|
||||
dependencies = [
|
||||
('UCX', '1.9.0', '-CUDA-11.3.0'),
|
||||
('CUDAcore', '11.3.0', '', True),
|
||||
('GDRCopy', '2.1', '-CUDA-11.3.0'),
|
||||
]
|
||||
|
||||
preconfigopts = 'export CC="pgcc -noswitcherror" && export CXX="pgc++ -noswitcherror" && export FC="pgfortran -noswitcherror" && '
|
||||
|
||||
configopts = '--enable-shared --enable-mpi-thread-multiple --with-verbs '
|
||||
configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support
|
||||
configopts += '--enable-mpirun-prefix-by-default '
|
||||
configopts += '--with-tm=/opt/pbs ' # Enable PBS
|
||||
configopts += '--enable-mpi-cxx ' # Enable building the C++ MPI bindings
|
||||
configopts += '--with-ucx=$EBROOTUCX '
|
||||
configopts += '--with-cuda=$EBROOTCUDACORE '
|
||||
|
||||
moduleclass = 'mpi'
|
65
o/OpenMPI/OpenMPI-4.1.1-GCC-10.2.0.eb
Normal file
65
o/OpenMPI/OpenMPI-4.1.1-GCC-10.2.0.eb
Normal file
@ -0,0 +1,65 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'OpenMPI'
|
||||
version = '4.1.1'
|
||||
|
||||
homepage = 'http://www.open-mpi.org/'
|
||||
description = """The Open MPI Project is an open source MPI-2 implementation."""
|
||||
|
||||
toolchain = {'name': 'GCC', 'version': '10.2.0'}
|
||||
|
||||
source_urls = ['https://github.com/open-mpi/ompi/archive/refs/tags/']
|
||||
sources = ['v%(version)s.tar.gz']
|
||||
|
||||
dependencies = [
|
||||
('hwloc', '2.2.0'),
|
||||
('UCX', '1.9.0',),
|
||||
]
|
||||
|
||||
preconfigopts = './autogen.pl && '
|
||||
|
||||
configopts = '--enable-shared --enable-mpi-thread-multiple --with-verbs '
|
||||
configopts += '--enable-mpirun-prefix-by-default '
|
||||
configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support
|
||||
configopts += '--with-tm=/opt/pbs ' # Enable PBS
|
||||
configopts += '--enable-mpi-cxx ' # Enable building the C++ MPI bindings
|
||||
configopts += '--with-ucx=$EBROOTUCX '
|
||||
|
||||
osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')]
|
||||
|
||||
postinstallcmds = [
|
||||
'echo "# By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default." >> %(installdir)s/etc/openmpi-mca-params.conf',
|
||||
'echo "btl_openib_allow_ib = true" >> %(installdir)s/etc/openmpi-mca-params.conf',
|
||||
]
|
||||
|
||||
libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"]
|
||||
sanity_check_paths = {
|
||||
'files': [
|
||||
"bin/%s" %
|
||||
binfile for binfile in [
|
||||
"ompi_info", "opal_wrapper", "orterun"]] + [
|
||||
"lib/lib%s.%s" %
|
||||
(libfile, SHLIB_EXT) for libfile in libs] + [
|
||||
"include/%s.h" %
|
||||
x for x in [
|
||||
"mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], 'dirs': [], }
|
||||
|
||||
import os
|
||||
if os.environ.get("CLUSTERNAME") in ["BARBORA"]:
|
||||
modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx5_0',
|
||||
'OMPI_MCA_btl_tcp_if_include': '10.33.4.0/24',
|
||||
'OMPI_MCA_orte_base_help_aggregate': '0',
|
||||
}
|
||||
elif os.environ.get("CLUSTERNAME") in ["KAROLINA"]:
|
||||
modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx5_0',
|
||||
'OMPI_MCA_orte_base_help_aggregate': '0',
|
||||
}
|
||||
else:
|
||||
modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx4_0',
|
||||
'OMPI_MCA_oob_tcp_if_include': '10.0.0.0/8',
|
||||
}
|
||||
|
||||
moduleclass = 'mpi'
|
30
p/pkgconfig/pkgconfig-1.5.1-GCCcore-10.2.0-python.eb
Normal file
30
p/pkgconfig/pkgconfig-1.5.1-GCCcore-10.2.0-python.eb
Normal file
@ -0,0 +1,30 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'PythonPackage'
|
||||
|
||||
name = 'pkgconfig'
|
||||
version = '1.5.1'
|
||||
versionsuffix = '-Python-3.8.6'
|
||||
|
||||
homepage = 'https://github.com/matze/pkgconfig'
|
||||
description = """pkgconfig is a Python module to interface with the pkg-config command line tool"""
|
||||
|
||||
toolchain = {'name': 'GCCcore', 'version': '10.2.0'}
|
||||
|
||||
source_urls = [PYPI_SOURCE]
|
||||
sources = [SOURCE_TAR_GZ]
|
||||
checksums = ['97bfe3d981bab675d5ea3ef259045d7919c93897db7d3b59d4e8593cba8d354f']
|
||||
|
||||
builddependencies = [('binutils', '2.35')]
|
||||
|
||||
dependencies = [
|
||||
('Python', '3.8.6'),
|
||||
('pkg-config', '0.29.2'),
|
||||
]
|
||||
|
||||
use_pip = True
|
||||
download_dep_fail = True
|
||||
sanity_pip_check = True
|
||||
|
||||
moduleclass = 'devel'
|
30
p/pybind11/pybind11-2.4.3-GCC-10.2.0-Python-3.8.6.eb
Normal file
30
p/pybind11/pybind11-2.4.3-GCC-10.2.0-Python-3.8.6.eb
Normal file
@ -0,0 +1,30 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
name = 'pybind11'
|
||||
version = '2.4.3'
|
||||
versionsuffix = '-Python-%(pyver)s'
|
||||
|
||||
homepage = 'https://pybind11.readthedocs.io'
|
||||
description = """pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa,
|
||||
mainly to create Python bindings of existing C++ code."""
|
||||
|
||||
toolchain = {'name': 'GCC', 'version': '10.2.0'}
|
||||
|
||||
source_urls = ['https://github.com/pybind/pybind11/archive/']
|
||||
sources = ['v%(version)s.tar.gz']
|
||||
patches = ['%(name)s-%(version)s-fix-get-include.patch']
|
||||
checksums = [
|
||||
'1eed57bc6863190e35637290f97a20c81cfe4d9090ac0a24f3bbf08f265eb71d', # v2.4.3.tar.gz
|
||||
'b03550f05dcff97eeb3d7f4cd393b0584341ac7a310c89ee120f95e54fdc3125', # pybind11-2.4.3-fix-get-include.patch
|
||||
]
|
||||
|
||||
builddependencies = [
|
||||
('CMake', '3.18.4'),
|
||||
('Eigen', '3.3.8'),
|
||||
]
|
||||
dependencies = [('Python', '3.8.6')]
|
||||
|
||||
configopts = "-DPYTHON_EXECUTABLE=$EBROOTPYTHON/bin/python"
|
||||
|
||||
moduleclass = 'lib'
|
26
p/pybind11/pybind11-2.6.0-GCC-10.2.0-Python-3.8.6.eb
Normal file
26
p/pybind11/pybind11-2.6.0-GCC-10.2.0-Python-3.8.6.eb
Normal file
@ -0,0 +1,26 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
name = 'pybind11'
|
||||
version = '2.6.0'
|
||||
versionsuffix = '-Python-%(pyver)s'
|
||||
|
||||
homepage = 'https://pybind11.readthedocs.io'
|
||||
description = """pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa,
|
||||
mainly to create Python bindings of existing C++ code."""
|
||||
|
||||
toolchain = {'name': 'GCC', 'version': '10.2.0'}
|
||||
|
||||
source_urls = ['https://github.com/pybind/pybind11/archive/']
|
||||
sources = ['v%(version)s.tar.gz']
|
||||
checksums = ['90b705137b69ee3b5fc655eaca66d0dc9862ea1759226f7ccd3098425ae69571']
|
||||
|
||||
builddependencies = [
|
||||
('CMake', '3.18.4'),
|
||||
('Eigen', '3.3.8'),
|
||||
]
|
||||
dependencies = [('Python', '3.8.6')]
|
||||
|
||||
configopts = "-DPYTHON_EXECUTABLE=$EBROOTPYTHON/bin/python"
|
||||
|
||||
moduleclass = 'lib'
|
40
s/Schrodinger/Schrodinger_2021-2_Linux-x86_64.eb
Normal file
40
s/Schrodinger/Schrodinger_2021-2_Linux-x86_64.eb
Normal file
@ -0,0 +1,40 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock='Binary'
|
||||
|
||||
name = "Schrodinger"
|
||||
version = "2021-2"
|
||||
versionsuffix = "_Linux-x86_64"
|
||||
|
||||
homepage = 'http://www.schrodinger.com/'
|
||||
description = """ Schrödinger aims to provide integrated software solutions and services
|
||||
that truly meet its customers’ needs. We want to empower researchers around the world to
|
||||
achieve their goals of improving human health and quality of life through advanced local_computational
|
||||
techniques that transform the way chemists design local_compounds and materials. """
|
||||
|
||||
toolchain = SYSTEM
|
||||
|
||||
#Schrodinger_Suites_2021-2_Linux-x86_64.tar
|
||||
sources = ['%(name)s_Suites_%(version)s%(versionsuffix)s.tar']
|
||||
|
||||
# -d <distribution-dir>... directory containing the install files
|
||||
# -m ..................... manual mode (no automatically included modules)
|
||||
# -b ..................... batch install
|
||||
# -s <SCHRODINGER> ....... installation directory
|
||||
# -k <tmpdir> ............ scratch directory
|
||||
# -t <thirdparty-dir> .... install directory for third-party modules
|
||||
install_cmd = 'tar xfv Schrodinger_Suites_%(version)s%(versionsuffix)s.tar && '
|
||||
install_cmd += 'cd Schrodinger_Suites_%(version)s%(versionsuffix)s && '
|
||||
install_cmd += './INSTALL -d . -s %(installdir)s -k %(builddir)s -t %(installdir)s/thirdparty -b *'
|
||||
|
||||
modextrapaths = {'SCHRODINGER': ''}
|
||||
|
||||
modextravars = {'SCHROD_LICENSE_FILE': '/apps/licenses/Schrodinger/license.dat'}
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ["maestro", "desmond" ],
|
||||
'dirs': ["thirdparty"]
|
||||
}
|
||||
|
||||
moduleclass = 'chem'
|
@ -0,0 +1,58 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'PythonBundle'
|
||||
|
||||
name = 'SciPy-bundle'
|
||||
version = '2020.03'
|
||||
versionsuffix = '-Python-3.8.6'
|
||||
|
||||
homepage = 'https://python.org/'
|
||||
description = "Bundle of Python packages for scientific software"
|
||||
|
||||
toolchain = {'name': 'intel', 'version': '2020b'}
|
||||
toolchainopts = {'pic': True, 'lowopt': True}
|
||||
|
||||
dependencies = [
|
||||
('Python', '3.8.6'),
|
||||
('pybind11', '2.6.0', '-GCC-10.2.0-Python-3.8.6', True), # required by scipy
|
||||
]
|
||||
|
||||
use_pip = True
|
||||
|
||||
exts_default_options = {'source_urls': [PYPI_SOURCE]}
|
||||
|
||||
# order is important!
|
||||
exts_list = [
|
||||
('numpy', '1.18.3', {
|
||||
'patches': ['numpy-1.18.2-mkl.patch'],
|
||||
'source_tmpl': '%(name)s-%(version)s.zip',
|
||||
'checksums': [
|
||||
'e46e2384209c91996d5ec16744234d1c906ab79a701ce1a26155c9ec890b8dc8', # numpy-1.18.2.zip
|
||||
'ea25ad5c0148c1398d282f0424e642fb9815a1a80f4512659b018e2adc378bcf', # numpy-1.18.2-mkl.patch
|
||||
],
|
||||
}),
|
||||
('scipy', '1.4.1', {
|
||||
'patches': ['scipy-1.4.1-fix-pthread.patch'],
|
||||
'checksums': [
|
||||
'dee1bbf3a6c8f73b6b218cb28eed8dd13347ea2f87d572ce19b289d6fd3fbc59', # scipy-1.4.1.tar.gz
|
||||
'4e2162a93caddce63a1aa2dfb6c181774a4f6615950e1d60c54bb4308fee3bb3', # scipy-1.4.1-fix-pthread.patch
|
||||
],
|
||||
}),
|
||||
('mpi4py', '3.0.3', {
|
||||
'checksums': ['012d716c8b9ed1e513fcc4b18e5af16a8791f51e6d1716baccf988ad355c5a1f'],
|
||||
}),
|
||||
('pandas', '1.0.3', {
|
||||
'checksums': ['32f42e322fb903d0e189a4c10b75ba70d90958cc4f66a1781ed027f1a1d14586'],
|
||||
}),
|
||||
('mpmath', '1.1.0', {
|
||||
'checksums': ['fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6'],
|
||||
}),
|
||||
('deap', '1.3.1', {
|
||||
'checksums': ['11f54493ceb54aae10dde676577ef59fc52d52f82729d5a12c90b0813c857a2f'],
|
||||
}),
|
||||
]
|
||||
|
||||
sanity_pip_check = True
|
||||
|
||||
moduleclass = 'lang'
|
65
s/SciPy-bundle/SciPy-bundle-2021.05-intel-2020b.eb
Normal file
65
s/SciPy-bundle/SciPy-bundle-2021.05-intel-2020b.eb
Normal file
@ -0,0 +1,65 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'PythonBundle'
|
||||
|
||||
name = 'SciPy-bundle'
|
||||
version = '2021.05'
|
||||
|
||||
homepage = 'https://python.org/'
|
||||
description = "Bundle of Python packages for scientific software"
|
||||
|
||||
toolchain = {'name': 'intel', 'version': '2020b'}
|
||||
toolchainopts = {'pic': True, 'lowopt': True}
|
||||
|
||||
builddependencies = [('hypothesis', '6.13.1', '', ('GCC', '10.2.0'))]
|
||||
|
||||
dependencies = [
|
||||
('Python', '3.8.6'),
|
||||
('pybind11', '2.6.0'), # required by scipy
|
||||
]
|
||||
|
||||
use_pip = True
|
||||
|
||||
# order is important!
|
||||
exts_list = [
|
||||
('numpy', '1.20.3', {
|
||||
'sources': [SOURCE_ZIP],
|
||||
'patches': [
|
||||
'numpy-1.20.3_skip-ppc-long-complex-test.patch',
|
||||
'numpy-1.20.3_xfail-test-nan.patch',
|
||||
],
|
||||
'checksums': [
|
||||
'e55185e51b18d788e49fe8305fd73ef4470596b33fc2c1ceb304566b99c71a69', # numpy-1.20.3.zip
|
||||
# numpy-1.20.3_skip-ppc-long-complex-test.patch
|
||||
'2f9a12e3a352b39076db84a7622fc8f4796abd3cb7f97f71958a495e864659a4',
|
||||
'f0ce961f7d79551598e23050d92f46e827e300f6a7e5a6112e58efcc10385d4d', # numpy-1.20.3_xfail-test-nan.patch
|
||||
],
|
||||
}),
|
||||
('scipy', '1.6.3', {
|
||||
'checksums': ['a75b014d3294fce26852a9d04ea27b5671d86736beb34acdfc05859246260707'],
|
||||
}),
|
||||
('mpi4py', '3.0.3', {
|
||||
'checksums': ['012d716c8b9ed1e513fcc4b18e5af16a8791f51e6d1716baccf988ad355c5a1f'],
|
||||
}),
|
||||
('numexpr', '2.7.3', {
|
||||
'checksums': ['43616529f9b7d1afc83386f943dc66c4da5e052f00217ba7e3ad8dd1b5f3a825'],
|
||||
}),
|
||||
('Bottleneck', '1.3.2', {
|
||||
'checksums': ['20179f0b66359792ea283b69aa16366419132f3b6cf3adadc0c48e2e8118e573'],
|
||||
}),
|
||||
('pandas', '1.2.4', {
|
||||
'preinstallopts': """sed -i 's@extra_compile_args = \["-Werror"\]@extra_compile_args = []@g' setup.py && """,
|
||||
'checksums': ['649ecab692fade3cbfcf967ff936496b0cfba0af00a55dfaacd82bdda5cb2279'],
|
||||
}),
|
||||
('mpmath', '1.2.1', {
|
||||
'checksums': ['79ffb45cf9f4b101a807595bcb3e72e0396202e0b1d25d689134b48c4216a81a'],
|
||||
}),
|
||||
('deap', '1.3.1', {
|
||||
'checksums': ['11f54493ceb54aae10dde676577ef59fc52d52f82729d5a12c90b0813c857a2f'],
|
||||
}),
|
||||
]
|
||||
|
||||
sanity_pip_check = True
|
||||
|
||||
moduleclass = 'lang'
|
46
s/Singularity/Singularity-3.8.0.eb
Normal file
46
s/Singularity/Singularity-3.8.0.eb
Normal file
@ -0,0 +1,46 @@
|
||||
# IT4Innovations 2020
|
||||
# LK
|
||||
# Dokoncit `make install` rucne, nejde bez ROOTa !!!
|
||||
# /apps/all/Singularity/3.7.0/etc/singularity/singularity.conf nv=yes !!!
|
||||
# Poslat info na tomas.karasek@vsb.cz o zmene...
|
||||
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'Singularity'
|
||||
version = '3.8.0'
|
||||
|
||||
homepage = 'https://github.com/sylabs/singularity'
|
||||
description = "Singularity is an open source container platform designed to be simple, fast, and secure. Singularity is optimized for EPC and HPC workloads, allowing untrusted users to run untrusted containers in a trusted way."
|
||||
|
||||
toolchain = SYSTEM
|
||||
|
||||
source_urls = ['https://github.com/hpcng/singularity/releases/download/v%s/' % version]
|
||||
sources = ['singularity-%(version)s.tar.gz']
|
||||
|
||||
builddependencies = [
|
||||
('Go', '1.13.5'),
|
||||
]
|
||||
|
||||
dependencies = [
|
||||
('squashfs-tools', '4.3'),
|
||||
]
|
||||
|
||||
osdependencies = [
|
||||
('openssl-devel', 'libssl-dev', 'libopenssl-devel'),
|
||||
]
|
||||
|
||||
skipsteps = ['configure']
|
||||
prebuildopts = './mconfig --prefix=%(installdir)s && '
|
||||
buildopts = '-C ./builddir'
|
||||
|
||||
|
||||
postinstallcmds = [
|
||||
'echo "mksquashfs path = /apps/all/squashfs-tools/4.3/bin" >> %(installdir)s/etc/singularity/singularity.conf',
|
||||
]
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/singularity'],
|
||||
'dirs': ['bin', 'etc', 'libexec', 'var'],
|
||||
}
|
||||
|
||||
moduleclass = 'tools'
|
22
s/SoX/SoX-14.4.2-intel-2020b.eb
Normal file
22
s/SoX/SoX-14.4.2-intel-2020b.eb
Normal file
@ -0,0 +1,22 @@
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'SoX'
|
||||
version = '14.4.2'
|
||||
|
||||
homepage = 'https://sourceforge.net/projects/sox'
|
||||
description = """SoX is the Swiss Army Knife of sound processing utilities. It can convert audio files
|
||||
to other popular audio file types and also apply sound effects and filters during the conversion."""
|
||||
|
||||
toolchain = {'name': 'intel', 'version': '2020b'}
|
||||
|
||||
source_urls = [SOURCEFORGE_SOURCE]
|
||||
sources = [SOURCELOWER_TAR_GZ]
|
||||
checksums = ['b45f598643ffbd8e363ff24d61166ccec4836fea6d3888881b8df53e3bb55f6c']
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/play', 'bin/rec', 'bin/sox', 'bin/soxi', 'include/sox.h',
|
||||
'lib/libsox.a', 'lib/libsox.%s' % SHLIB_EXT, 'lib/pkgconfig/sox.pc'],
|
||||
'dirs': ['share/man'],
|
||||
}
|
||||
|
||||
moduleclass = 'tools'
|
@ -1,4 +1,5 @@
|
||||
# IT4Innovations 2019
|
||||
# IT4Innovations 2021
|
||||
# JK
|
||||
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
|
41
t/Tcl/Tcl-8.6.11-GCCcore-10.2.0.eb
Normal file
41
t/Tcl/Tcl-8.6.11-GCCcore-10.2.0.eb
Normal file
@ -0,0 +1,41 @@
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'Tcl'
|
||||
version = '8.6.11'
|
||||
|
||||
homepage = 'https://www.tcl.tk/'
|
||||
|
||||
description = """
|
||||
Tcl (Tool Command Language) is a very powerful but easy to learn dynamic
|
||||
programming language, suitable for a very wide range of uses, including web
|
||||
and desktop applications, networking, administration, testing and many more.
|
||||
"""
|
||||
|
||||
toolchain = {'name': 'GCCcore', 'version': '10.2.0'}
|
||||
|
||||
source_urls = ["http://prdownloads.sourceforge.net/tcl"]
|
||||
sources = ['%(namelower)s%(version)s-src.tar.gz']
|
||||
# checksums = ['ad0cd2de2c87b9ba8086b43957a0de3eb2eb565c7159d5f53ccbba3feb915f4e']
|
||||
|
||||
builddependencies = [('binutils', '2.35')]
|
||||
|
||||
dependencies = [('zlib', '1.2.11')]
|
||||
|
||||
configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"'
|
||||
|
||||
runtest = 'test'
|
||||
|
||||
start_dir = 'unix'
|
||||
|
||||
postinstallcmds = [
|
||||
'ln -s %(installdir)s/bin/tclsh%(version_major)s.%(version_minor)s %(installdir)s/bin/tclsh'
|
||||
]
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/tclsh%(version_major)s.%(version_minor)s', 'bin/tclsh',
|
||||
'include/tcl.h', 'lib/libtcl%%(version_major)s.%%(version_minor)s.%s' % SHLIB_EXT,
|
||||
'lib/tclConfig.sh', 'man/man1/tclsh.1'],
|
||||
'dirs': ['share'],
|
||||
}
|
||||
|
||||
moduleclass = 'lang'
|
40
t/Tk/Tk-8.6.11-GCCcore-10.2.0.eb
Normal file
40
t/Tk/Tk-8.6.11-GCCcore-10.2.0.eb
Normal file
@ -0,0 +1,40 @@
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'Tk'
|
||||
version = '8.6.11'
|
||||
|
||||
homepage = 'https://www.tcl.tk/'
|
||||
description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for
|
||||
building a graphical user interface (GUI) in many different programming languages."""
|
||||
|
||||
toolchain = {'name': 'GCCcore', 'version': '10.2.0'}
|
||||
|
||||
source_urls = ["https://prdownloads.sourceforge.net/tcl"]
|
||||
sources = ['%(namelower)s%(version)s-src.tar.gz']
|
||||
#patches = ['Tk-8.6.4_different-prefix-with-tcl.patch']
|
||||
#checksums = [
|
||||
# 'd3f9161e8ba0f107fe8d4df1f6d3a14c30cc3512dfc12a795daa367a27660dac', # tk8.6.9-src.tar.gz
|
||||
# '7a6daa8349393af3d340e774aebf07c7410c51e01bc654ceb3679877063b961d', # Tk-8.6.4_different-prefix-with-tcl.patch
|
||||
#]
|
||||
|
||||
builddependencies = [('binutils', '2.35')]
|
||||
dependencies = [
|
||||
('Tcl', version),
|
||||
('X11', '20201008'),
|
||||
('zlib', '1.2.11'),
|
||||
]
|
||||
|
||||
configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib CFLAGS="-I$EBROOTTCL/include"'
|
||||
|
||||
installopts = "&& make install-private-headers"
|
||||
|
||||
postinstallcmds = ["ln -s wish%(version_major_minor)s %(installdir)s/bin/wish"]
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ["bin/wish", "lib/tkConfig.sh", "include/tkInt.h"],
|
||||
'dirs': [],
|
||||
}
|
||||
|
||||
start_dir = 'unix'
|
||||
|
||||
moduleclass = 'vis'
|
49
t/Togl/Togl-2.0-GCCcore-10.2.0.eb
Normal file
49
t/Togl/Togl-2.0-GCCcore-10.2.0.eb
Normal file
@ -0,0 +1,49 @@
|
||||
# IT4Innovations 2021
|
||||
# JK, LK
|
||||
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'Togl'
|
||||
version = '2.0'
|
||||
|
||||
homepage = 'https://sourceforge.net/projects/togl/'
|
||||
description = """A Tcl/Tk widget for OpenGL rendering."""
|
||||
|
||||
toolchain = {'name': 'GCCcore', 'version': '10.2.0'}
|
||||
|
||||
source_urls = ['https://downloads.sourceforge.net/project/togl/Togl/2.0/']
|
||||
sources = ['%(name)s%(version)s-src.tar.gz']
|
||||
patches = [
|
||||
'Togl-2.0_configure.patch',
|
||||
'Togl-2.0_decl.patch',
|
||||
]
|
||||
checksums = [
|
||||
'b7d4a90bbad3aca618d505ee99e7fd8fb04c829f63231dda2360f557ba3f7610', # Togl2.0-src.tar.gz
|
||||
'da97f36b60cd107444cd92453809135b14dc1e8775146b3ba0731da8002e6f9f', # Togl-2.0_configure.patch
|
||||
'05db6b3ca5139f60616d074903883a3070fcfb1eb8c965b0938779b4f9a6ec6a', # Togl-2.0_decl.patch
|
||||
]
|
||||
|
||||
builddependencies = [('binutils', '2.35')]
|
||||
|
||||
dependencies = [
|
||||
('Mesa', '20.2.1'),
|
||||
('Tk', '8.6.11'),
|
||||
('Tcl', '8.6.11'),
|
||||
]
|
||||
|
||||
preconfigopts = 'export CFLAGS="$CFLAGS -DTOGL_USE_FONTS=0" && '
|
||||
|
||||
configopts = "--prefix=%(installdir)s --exec-prefix=%(installdir)s "
|
||||
configopts += "--with-tcl=$EBROOTTCL/lib --with-tk=$EBROOTTK/lib"
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': [],
|
||||
'dirs': ['include', 'lib'],
|
||||
}
|
||||
|
||||
modextrapaths = {
|
||||
'LD_LIBRARY_PATH': 'lib/Togl2.0',
|
||||
'LIBRARY_PATH': 'lib/Togl2.0',
|
||||
}
|
||||
|
||||
moduleclass = 'vis'
|
91
t/Togl/Togl-2.0_configure.patch
Normal file
91
t/Togl/Togl-2.0_configure.patch
Normal file
@ -0,0 +1,91 @@
|
||||
* remove check for tclInt.h and tkInt.h in source folder, not necessary
|
||||
author: Miguel Dias Costa (National University of Singapore)
|
||||
--- configure.orig 2020-05-21 15:18:49.193616492 +0800
|
||||
+++ configure 2020-05-21 15:31:31.222311056 +0800
|
||||
@@ -7190,7 +7190,7 @@
|
||||
{ echo "$as_me:$LINENO: checking for Tcl private include files" >&5
|
||||
echo $ECHO_N "checking for Tcl private include files... $ECHO_C" >&6; }
|
||||
|
||||
- TCL_SRC_DIR_NATIVE=`${CYGPATH} ${TCL_SRC_DIR}`
|
||||
+ TCL_SRC_DIR_NATIVE=`${CYGPATH}`
|
||||
TCL_TOP_DIR_NATIVE=\"${TCL_SRC_DIR_NATIVE}\"
|
||||
TCL_GENERIC_DIR_NATIVE=\"${TCL_SRC_DIR_NATIVE}/generic\"
|
||||
TCL_UNIX_DIR_NATIVE=\"${TCL_SRC_DIR_NATIVE}/unix\"
|
||||
@@ -7217,12 +7217,12 @@
|
||||
TCL_INCLUDES="${TCL_INCLUDES} ${TCL_INCLUDE_SPEC} `echo "${TCL_INCLUDE_SPEC}" | sed -e 's/Headers/PrivateHeaders/'`"; fi
|
||||
;;
|
||||
esac
|
||||
- else
|
||||
- if test ! -f "${TCL_SRC_DIR}/generic/tclInt.h" ; then
|
||||
- { { echo "$as_me:$LINENO: error: Cannot find private header tclInt.h in ${TCL_SRC_DIR}" >&5
|
||||
-echo "$as_me: error: Cannot find private header tclInt.h in ${TCL_SRC_DIR}" >&2;}
|
||||
- { (exit 1); exit 1; }; }
|
||||
- fi
|
||||
+# else
|
||||
+# if test ! -f "${TCL_SRC_DIR}/generic/tclInt.h" ; then
|
||||
+# { { echo "$as_me:$LINENO: error: Cannot find private header tclInt.h in ${TCL_SRC_DIR}" >&5
|
||||
+#echo "$as_me: error: Cannot find private header tclInt.h in ${TCL_SRC_DIR}" >&2;}
|
||||
+# { (exit 1); exit 1; }; }
|
||||
+# fi
|
||||
fi
|
||||
|
||||
|
||||
@@ -7235,8 +7235,8 @@
|
||||
|
||||
|
||||
|
||||
- { echo "$as_me:$LINENO: result: Using srcdir found in tclConfig.sh: ${TCL_SRC_DIR}" >&5
|
||||
-echo "${ECHO_T}Using srcdir found in tclConfig.sh: ${TCL_SRC_DIR}" >&6; }
|
||||
+# { echo "$as_me:$LINENO: result: Using srcdir found in tclConfig.sh: ${TCL_SRC_DIR}" >&5
|
||||
+#echo "${ECHO_T}Using srcdir found in tclConfig.sh: ${TCL_SRC_DIR}" >&6; }
|
||||
|
||||
|
||||
#TEA_PUBLIC_TK_HEADERS
|
||||
@@ -7244,7 +7244,7 @@
|
||||
{ echo "$as_me:$LINENO: checking for Tk private include files" >&5
|
||||
echo $ECHO_N "checking for Tk private include files... $ECHO_C" >&6; }
|
||||
|
||||
- TK_SRC_DIR_NATIVE=`${CYGPATH} ${TK_SRC_DIR}`
|
||||
+ TK_SRC_DIR_NATIVE=`${CYGPATH}`
|
||||
TK_TOP_DIR_NATIVE=\"${TK_SRC_DIR_NATIVE}\"
|
||||
TK_UNIX_DIR_NATIVE=\"${TK_SRC_DIR_NATIVE}/unix\"
|
||||
TK_WIN_DIR_NATIVE=\"${TK_SRC_DIR_NATIVE}/win\"
|
||||
@@ -7278,12 +7278,12 @@
|
||||
TK_INCLUDES="-I\"${TK_BIN_DIR}/Headers\" -I\"${TK_BIN_DIR}/PrivateHeaders\" ${TK_INCLUDES}"; fi
|
||||
;;
|
||||
esac
|
||||
- else
|
||||
- if test ! -f "${TK_SRC_DIR}/generic/tkInt.h" ; then
|
||||
- { { echo "$as_me:$LINENO: error: Cannot find private header tkInt.h in ${TK_SRC_DIR}" >&5
|
||||
-echo "$as_me: error: Cannot find private header tkInt.h in ${TK_SRC_DIR}" >&2;}
|
||||
- { (exit 1); exit 1; }; }
|
||||
- fi
|
||||
+# else
|
||||
+# if test ! -f "${TK_SRC_DIR}/generic/tkInt.h" ; then
|
||||
+# { { echo "$as_me:$LINENO: error: Cannot find private header tkInt.h in ${TK_SRC_DIR}" >&5
|
||||
+#echo "$as_me: error: Cannot find private header tkInt.h in ${TK_SRC_DIR}" >&2;}
|
||||
+# { (exit 1); exit 1; }; }
|
||||
+# fi
|
||||
fi
|
||||
|
||||
|
||||
@@ -7294,8 +7294,8 @@
|
||||
|
||||
|
||||
|
||||
- { echo "$as_me:$LINENO: result: Using srcdir found in tkConfig.sh: ${TK_SRC_DIR}" >&5
|
||||
-echo "${ECHO_T}Using srcdir found in tkConfig.sh: ${TK_SRC_DIR}" >&6; }
|
||||
+# { echo "$as_me:$LINENO: result: Using srcdir found in tkConfig.sh: ${TK_SRC_DIR}" >&5
|
||||
+#echo "${ECHO_T}Using srcdir found in tkConfig.sh: ${TK_SRC_DIR}" >&6; }
|
||||
|
||||
|
||||
if test "${TEA_WINDOWINGSYSTEM}" = "x11" ; then
|
||||
@@ -8929,7 +8929,7 @@
|
||||
|
||||
fi
|
||||
|
||||
- SHLIB_LD="${TCL_SRC_DIR}/unix/ldAix ${SHLIB_LD} ${SHLIB_LD_FLAGS}"
|
||||
+ SHLIB_LD="${SHLIB_LD} ${SHLIB_LD_FLAGS}"
|
||||
DL_LIBS="-ldl"
|
||||
CC_SEARCH_FLAGS='-L${LIB_RUNTIME_DIR}'
|
||||
LD_SEARCH_FLAGS=${CC_SEARCH_FLAGS}
|
13
t/Togl/Togl-2.0_decl.patch
Normal file
13
t/Togl/Togl-2.0_decl.patch
Normal file
@ -0,0 +1,13 @@
|
||||
* fix function declaration to match previous definition
|
||||
author: Miguel Dias Costa (National University of Singapore)
|
||||
--- toglDecls.h.orig 2020-01-17 14:57:44.000178028 +0800
|
||||
+++ toglDecls.h 2020-01-17 14:58:07.046072088 +0800
|
||||
@@ -117,7 +117,7 @@
|
||||
EXTERN Bool Togl_UpdatePending _ANSI_ARGS_((const Togl * togl));
|
||||
/* 38 */
|
||||
EXTERN int Togl_WriteObj _ANSI_ARGS_((const Togl * togl,
|
||||
- const Tcl_Obj * toglfont, Tcl_Obj * obj));
|
||||
+ const Tcl_Obj * toglfont, const Tcl_Obj * obj));
|
||||
/* 39 */
|
||||
EXTERN int Togl_WriteChars _ANSI_ARGS_((const Togl * togl,
|
||||
const Tcl_Obj * toglfont, const char * str,
|
51
u/UCX/UCX-1.10.1-NVHPC-21.2-CUDA-11.3.0.eb
Normal file
51
u/UCX/UCX-1.10.1-NVHPC-21.2-CUDA-11.3.0.eb
Normal file
@ -0,0 +1,51 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'UCX'
|
||||
version = '1.10.1'
|
||||
versionsuffix= '-CUDA-11.3.0'
|
||||
|
||||
homepage = 'http://www.openucx.org/'
|
||||
description = """Unified Communication X
|
||||
An open-source production grade communication framework for data centric
|
||||
and high-performance applications
|
||||
"""
|
||||
|
||||
toolchain = {'name': 'NVHPC', 'version': '21.2'}
|
||||
toolchainopts = {'pic': True}
|
||||
|
||||
source_urls = ['https://github.com/openucx/ucx/releases/download/v%(version)s']
|
||||
sources = ['%(namelower)s-%(version)s.tar.gz']
|
||||
#patches = ['%(name)s-%(version)s.patch']
|
||||
|
||||
builddependencies = [
|
||||
('binutils', '2.34'),
|
||||
('Autotools', '20200321'),
|
||||
('pkg-config', '0.29.2'),
|
||||
]
|
||||
|
||||
osdependencies = [OS_PKG_IBVERBS_DEV]
|
||||
|
||||
dependencies = [
|
||||
('numactl', '2.0.13'),
|
||||
('CUDAcore', '11.3.0', '', True),
|
||||
('GDRCopy', '2.1', '-CUDA-11.3.0'),
|
||||
]
|
||||
|
||||
configure_cmd = "contrib/configure-release"
|
||||
|
||||
configopts = '--enable-optimizations --enable-cma --enable-mt --with-verbs --with-gdrcopy=$EBROOTGDRCOPY '
|
||||
configopts += '--without-java --disable-doxygen-doc --with-cuda=$EBROOTNCUDACORE '
|
||||
|
||||
buildopts = 'V=1'
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/ucx_info', 'bin/ucx_perftest', 'bin/ucx_read_profile'],
|
||||
'dirs': ['include', 'lib', 'share']
|
||||
}
|
||||
|
||||
sanity_check_commands = ["ucx_info -d"]
|
||||
|
||||
moduleclass = 'lib'
|
48
u/UCX/UCX-1.9.0-GCCcore-8.2.0.eb
Normal file
48
u/UCX/UCX-1.9.0-GCCcore-8.2.0.eb
Normal file
@ -0,0 +1,48 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'UCX'
|
||||
version = '1.9.0'
|
||||
|
||||
homepage = 'http://www.openucx.org/'
|
||||
description = """Unified Communication X
|
||||
An open-source production grade communication framework for data centric
|
||||
and high-performance applications
|
||||
"""
|
||||
|
||||
toolchain = {'name': 'GCCcore', 'version': '8.2.0'}
|
||||
toolchainopts = {'pic': True}
|
||||
|
||||
source_urls = ['https://github.com/openucx/ucx/releases/download/v%(version)s']
|
||||
sources = ['%(namelower)s-%(version)s.tar.gz']
|
||||
checksums = ['a7a2c8841dc0d5444088a4373dc9b9cc68dbffcd917c1eba92ca8ed8e5e635fb']
|
||||
|
||||
builddependencies = [
|
||||
('binutils', '2.31.1'),
|
||||
('Autotools', '20180311', '', True),
|
||||
('pkg-config', '0.29.2', '', True),
|
||||
]
|
||||
|
||||
osdependencies = [OS_PKG_IBVERBS_DEV]
|
||||
|
||||
dependencies = [
|
||||
('numactl', '2.0.12'),
|
||||
]
|
||||
|
||||
configure_cmd = "contrib/configure-release"
|
||||
|
||||
configopts = '--enable-optimizations --enable-cma --enable-mt --with-verbs '
|
||||
configopts += '--without-java --disable-doxygen-doc '
|
||||
|
||||
buildopts = 'V=1'
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/ucx_info', 'bin/ucx_perftest', 'bin/ucx_read_profile'],
|
||||
'dirs': ['include', 'lib', 'share']
|
||||
}
|
||||
|
||||
sanity_check_commands = ["ucx_info -d"]
|
||||
|
||||
moduleclass = 'lib'
|
51
u/UCX/UCX-1.9.0-NVHPC-21.2-CUDA-11.2.2.eb
Normal file
51
u/UCX/UCX-1.9.0-NVHPC-21.2-CUDA-11.2.2.eb
Normal file
@ -0,0 +1,51 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'UCX'
|
||||
version = '1.9.0'
|
||||
versionsuffix= '-CUDA-11.2.2'
|
||||
|
||||
homepage = 'http://www.openucx.org/'
|
||||
description = """Unified Communication X
|
||||
An open-source production grade communication framework for data centric
|
||||
and high-performance applications
|
||||
"""
|
||||
|
||||
toolchain = {'name': 'NVHPC', 'version': '21.2'}
|
||||
toolchainopts = {'pic': True}
|
||||
|
||||
source_urls = ['https://github.com/openucx/ucx/releases/download/v%(version)s']
|
||||
sources = ['%(namelower)s-%(version)s.tar.gz']
|
||||
#patches = ['%(name)s-%(version)s.patch']
|
||||
|
||||
builddependencies = [
|
||||
('binutils', '2.34'),
|
||||
('Autotools', '20200321'),
|
||||
('pkg-config', '0.29.2'),
|
||||
]
|
||||
|
||||
osdependencies = [OS_PKG_IBVERBS_DEV]
|
||||
|
||||
dependencies = [
|
||||
('numactl', '2.0.13'),
|
||||
('CUDAcore', '11.2.2', '', True),
|
||||
('GDRCopy', '2.1', versionsuffix),
|
||||
]
|
||||
|
||||
configure_cmd = "contrib/configure-release"
|
||||
|
||||
configopts = '--enable-optimizations --enable-cma --enable-mt --with-verbs --with-gdrcopy=$EBROOTGDRCOPY '
|
||||
configopts += '--without-java --disable-doxygen-doc --with-cuda=$EBROOTCUDACORE '
|
||||
|
||||
buildopts = 'V=1'
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/ucx_info', 'bin/ucx_perftest', 'bin/ucx_read_profile'],
|
||||
'dirs': ['include', 'lib', 'share']
|
||||
}
|
||||
|
||||
sanity_check_commands = ["ucx_info -d"]
|
||||
|
||||
moduleclass = 'lib'
|
51
u/UCX/UCX-1.9.0-NVHPC-21.2-CUDA-11.3.0.eb
Normal file
51
u/UCX/UCX-1.9.0-NVHPC-21.2-CUDA-11.3.0.eb
Normal file
@ -0,0 +1,51 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'UCX'
|
||||
version = '1.9.0'
|
||||
versionsuffix= '-CUDA-11.3.0'
|
||||
|
||||
homepage = 'http://www.openucx.org/'
|
||||
description = """Unified Communication X
|
||||
An open-source production grade communication framework for data centric
|
||||
and high-performance applications
|
||||
"""
|
||||
|
||||
toolchain = {'name': 'NVHPC', 'version': '21.2'}
|
||||
toolchainopts = {'pic': True}
|
||||
|
||||
source_urls = ['https://github.com/openucx/ucx/releases/download/v%(version)s']
|
||||
sources = ['%(namelower)s-%(version)s.tar.gz']
|
||||
#patches = ['%(name)s-%(version)s.patch']
|
||||
|
||||
builddependencies = [
|
||||
('binutils', '2.34'),
|
||||
('Autotools', '20200321'),
|
||||
('pkg-config', '0.29.2'),
|
||||
]
|
||||
|
||||
osdependencies = [OS_PKG_IBVERBS_DEV]
|
||||
|
||||
dependencies = [
|
||||
('numactl', '2.0.13'),
|
||||
('CUDAcore', '11.3.0', '', True),
|
||||
('GDRCopy', '2.1', '-CUDA-11.3.0'),
|
||||
]
|
||||
|
||||
configure_cmd = "contrib/configure-release"
|
||||
|
||||
configopts = '--enable-optimizations --enable-cma --enable-mt --with-verbs --with-gdrcopy=$EBROOTGDRCOPY '
|
||||
configopts += '--without-java --disable-doxygen-doc --with-cuda=$EBROOTCUDACORE '
|
||||
|
||||
buildopts = 'V=1'
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/ucx_info', 'bin/ucx_perftest', 'bin/ucx_read_profile'],
|
||||
'dirs': ['include', 'lib', 'share']
|
||||
}
|
||||
|
||||
sanity_check_commands = ["ucx_info -d"]
|
||||
|
||||
moduleclass = 'lib'
|
@ -0,0 +1,70 @@
|
||||
# IT4Innovations 2020
|
||||
# LK
|
||||
|
||||
easyblock = 'MakeCp'
|
||||
|
||||
name = 'VASP'
|
||||
version = '5.4.4'
|
||||
versionsuffix = '-mkl=sequential-BEEF'
|
||||
|
||||
homepage = 'http://www.vasp.at'
|
||||
description = """The Vienna Ab initio Simulation Package (VASP) is a local_computer program for atomic scale
|
||||
materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics,
|
||||
from first principles.
|
||||
|
||||
To use VASP, You need academic licenses from University of Wiena. Follow the instructions https://www.vasp.at/index.php/faqs.
|
||||
|
||||
Then send us please a list of authorized users and their ID for which you need this access. Please use only http://support.it4i.cz/rt. We are responsible to verify your licenses. After succesfull verification You will be granted to use VASP in our enviroment."""
|
||||
|
||||
toolchain = {'name': 'intel', 'version': '2020a'}
|
||||
toolchainopts = {'pic': True, 'usempi': True}
|
||||
|
||||
# Vasp is proprietary software, see http://www.vasp.at/index.php/faqs on
|
||||
# how to get access to the code
|
||||
sources = ['%(namelower)s.%(version)s.tar.gz']
|
||||
|
||||
dependencies = [
|
||||
('zlib', '1.2.11', '', True),
|
||||
('BEEF', '0.1.1'),
|
||||
]
|
||||
|
||||
prebuildopts = 'cp arch/makefile.include.linux_intel ./makefile.include && '
|
||||
|
||||
# path to libfftw3xf_intel.a is hardcoded in makefile.include
|
||||
prebuildopts += 'sed -i "s|\$(MKLROOT)/interfaces/fftw3xf|\$(FFTW_LIB_DIR)|" makefile.include && '
|
||||
|
||||
# remove mkl flag to prevent mixing dynamic libs with the static libs in
|
||||
# LIBBLACS/SCALAPACK
|
||||
prebuildopts += 'sed -i "s|-mkl=sequential ||" makefile.include && '
|
||||
|
||||
# OFLAG = -O2 -xAVX
|
||||
prebuildopts += 'sed -i "s|OFLAG = -O2|OFLAG = -O2 -ip -xHost|" makefile.include && '
|
||||
|
||||
# objects add MKLROOT
|
||||
prebuildopts += 'sed -i "s|OBJECTS = fftmpiw.o fftmpi_map.o fft3dlib.o fftw3d.o|OBJECTS = fftmpiw.o fftmpi_map.o fft3dlib.o fftw3d.o \$(MKLROOT)/lib/intel64_lin/libfftw3xf_intel.a|" makefile.include && '
|
||||
|
||||
prebuildopts += 'sed -i "s|FFLAGS = -assume byterecl -w|FFLAGS = -FR -assume byterecl|" makefile.include && '
|
||||
prebuildopts += 'sed -i "s|BLAS =|BLAS = -mkl=sequential|" makefile.include && '
|
||||
|
||||
## libbeef
|
||||
prebuildopts += 'sed -i "s|LLIBS =|LLIBS = $(SCALAPACK) $(LAPACK) $(BLAS) -L$EBROOTBEEF -lbeef|" makefile.include && '
|
||||
|
||||
# VASP uses LIBS as a list of folders
|
||||
prebuildopts += 'unset LIBS && '
|
||||
|
||||
#prebuildopts += 'exit 1'
|
||||
|
||||
buildopts = 'all BLACS="$LIBBLACS" SCALAPACK="$LIBSCALAPACK" '
|
||||
|
||||
parallel = 1
|
||||
|
||||
files_to_copy = [(['bin/vasp_std', 'bin/vasp_gam', 'bin/vasp_ncl'], 'bin')]
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/vasp_std', 'bin/vasp_gam', 'bin/vasp_ncl'],
|
||||
'dirs': []
|
||||
}
|
||||
|
||||
modluafooter = 'add_property("state","license")'
|
||||
|
||||
moduleclass = 'phys'
|
@ -30,6 +30,11 @@ dependencies = [
|
||||
|
||||
prebuildopts = 'cp arch/makefile.include.linux_intel ./makefile.include && '
|
||||
|
||||
# AMD/intel cpu
|
||||
import os
|
||||
if os.environ.get("CLUSTERNAME") in ["KAROLINA"]:
|
||||
prebuildopts += 'sed -i "s|-xHOST|-march=znver2|" makefile.include && '
|
||||
|
||||
# path to libfftw3xf_intel.a is hardcoded in makefile.include
|
||||
prebuildopts += 'sed -i "s|\$(MKLROOT)/interfaces/fftw3xf|\$(FFTW_LIB_DIR)|" makefile.include && '
|
||||
|
||||
@ -38,7 +43,7 @@ prebuildopts += 'sed -i "s|\$(MKLROOT)/interfaces/fftw3xf|\$(FFTW_LIB_DIR)|" mak
|
||||
prebuildopts += 'sed -i "s|-mkl=sequential ||" makefile.include && '
|
||||
|
||||
# OFLAG = -O2 -xAVX
|
||||
prebuildopts += 'sed -i "s|OFLAG = -O2|OFLAG = -O2 -ip -xHost|" makefile.include && '
|
||||
prebuildopts += 'sed -i "s|OFLAG = -O2|OFLAG = -O3 -ip -march=znver2|" makefile.include && '
|
||||
|
||||
# objects add MKLROOT
|
||||
prebuildopts += 'sed -i "s|OBJECTS = fftmpiw.o fftmpi_map.o fft3dlib.o fftw3d.o|OBJECTS = fftmpiw.o fftmpi_map.o fft3dlib.o fftw3d.o \$(MKLROOT)/lib/intel64_lin/libfftw3xf_intel.a|" makefile.include && '
|
||||
@ -54,7 +59,7 @@ prebuildopts += 'unset LIBS && '
|
||||
|
||||
#prebuildopts += 'exit 1'
|
||||
|
||||
buildopts = 'all BLACS="$LIBBLACS" SCALAPACK="$LIBSCALAPACK" '
|
||||
buildopts = 'all' # BLACS="$LIBBLACS" SCALAPACK="$LIBSCALAPACK" '
|
||||
|
||||
parallel = 1
|
||||
|
||||
|
67
v/VASP/VASP-6.2.0-intel-2020b-mkl=sequential-karolina.eb
Normal file
67
v/VASP/VASP-6.2.0-intel-2020b-mkl=sequential-karolina.eb
Normal file
@ -0,0 +1,67 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'MakeCp'
|
||||
|
||||
name = 'VASP'
|
||||
version = '6.2.0'
|
||||
versionsuffix = '-mkl=sequential-march=znver2'
|
||||
|
||||
homepage = 'http://www.vasp.at'
|
||||
description = """The Vienna Ab initio Simulation Package (VASP) is a local_computer program for atomic scale
|
||||
materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics,
|
||||
from first principles.
|
||||
|
||||
To use VASP, You need academic licenses from University of Wiena. Follow the instructions https://www.vasp.at/index.php/faqs.
|
||||
|
||||
Then send us please a list of authorized users and their ID for which you need this access. Please use only http://support.it4i.cz/rt. We are responsible to verify your licenses. After succesfull verification You will be granted to use VASP in our enviroment."""
|
||||
|
||||
toolchain = {'name': 'intel', 'version': '2020b'}
|
||||
toolchainopts = {'pic': True, 'usempi': True}
|
||||
|
||||
# Vasp is proprietary software, see http://www.vasp.at/index.php/faqs on
|
||||
# how to get access to the code
|
||||
sources = ['%(namelower)s.%(version)s.tgz']
|
||||
|
||||
prebuildopts = 'cp arch/makefile.include.linux_intel ./makefile.include && '
|
||||
|
||||
# AMD/intel cpu
|
||||
import os
|
||||
if os.environ.get("CLUSTERNAME") in ["KAROLINA"]:
|
||||
prebuildopts += 'sed -i "s|-xHOST|-march=znver2|" makefile.include && '
|
||||
|
||||
# path to libfftw3xf_intel.a is hardcoded in makefile.include
|
||||
prebuildopts += 'sed -i "s|\$(MKLROOT)/interfaces/fftw3xf|\$(FFTW_LIB_DIR)|" makefile.include && '
|
||||
|
||||
# remove mkl flag to prevent mixing dynamic libs with the static libs in
|
||||
# LIBBLACS/SCALAPACK
|
||||
prebuildopts += 'sed -i "s|-mkl=sequential ||" makefile.include && '
|
||||
|
||||
# OFLAG = -O2 -xAVX
|
||||
prebuildopts += 'sed -i "s|OFLAG = -O2|OFLAG = -O3 -ip -march=znver2|" makefile.include && '
|
||||
|
||||
# objects add MKLROOT
|
||||
prebuildopts += 'sed -i "s|OBJECTS = fftmpiw.o fftmpi_map.o fft3dlib.o fftw3d.o|OBJECTS = fftmpiw.o fftmpi_map.o fft3dlib.o fftw3d.o \$(MKLROOT)/lib/intel64_lin/libfftw3xf_intel.a|" makefile.include && '
|
||||
|
||||
prebuildopts += 'sed -i "s|FFLAGS = -assume byterecl -w|FFLAGS = -FR -assume byterecl|" makefile.include && '
|
||||
prebuildopts += 'sed -i "s|BLAS =|BLAS = -mkl=sequential|" makefile.include && '
|
||||
|
||||
# VASP uses LIBS as a list of folders
|
||||
prebuildopts += 'unset LIBS && '
|
||||
|
||||
#prebuildopts += 'exit 1'
|
||||
|
||||
buildopts = 'std gam ncl ' #BLACS="$LIBBLACS" SCALAPACK="$LIBSCALAPACK" '
|
||||
|
||||
parallel = 1
|
||||
|
||||
files_to_copy = [(['bin/vasp_std', 'bin/vasp_gam', 'bin/vasp_ncl'], 'bin')]
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/vasp_std', 'bin/vasp_gam', 'bin/vasp_ncl'],
|
||||
'dirs': []
|
||||
}
|
||||
|
||||
modluafooter = 'add_property("state","license")'
|
||||
|
||||
moduleclass = 'phys'
|
52
v/VASP/VASP-6.2.0-intel-2020b.eb
Normal file
52
v/VASP/VASP-6.2.0-intel-2020b.eb
Normal file
@ -0,0 +1,52 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'MakeCp'
|
||||
|
||||
name = 'VASP'
|
||||
version = '6.2.0'
|
||||
versionsuffix = '-mkl=sequential'
|
||||
|
||||
homepage = 'http://www.vasp.at'
|
||||
description = """The Vienna Ab initio Simulation Package (VASP) is a local_computer program for atomic scale
|
||||
materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics,
|
||||
from first principles.
|
||||
|
||||
To use VASP, You need academic licenses from University of Wiena. Follow the instructions https://www.vasp.at/index.php/faqs.
|
||||
|
||||
Then send us please a list of authorized users and their ID for which you need this access. Please use only http://support.it4i.cz/rt. We are responsible to verify your licenses. After succesfull verification You will be granted to use VASP in our enviroment."""
|
||||
|
||||
toolchain = {'name': 'intel', 'version': '2020b'}
|
||||
toolchainopts = {'usempi': True}
|
||||
|
||||
# Vasp is proprietary software, see http://www.vasp.at/index.php/faqs on
|
||||
# how to get access to the code
|
||||
sources = ['%(namelower)s.%(version)s.tgz']
|
||||
|
||||
prebuildopts = 'cp arch/makefile.include.linux_intel ./makefile.include && '
|
||||
|
||||
# Makefile uses LIBS as a list of folders
|
||||
prebuildopts += 'unset LIBS && '
|
||||
|
||||
_targets = ['std', 'gam', 'ncl']
|
||||
|
||||
buildopts = '%s ' % ' '.join(_targets)
|
||||
buildopts += 'FCL="$MPIF90" DEBUG="$FFLAGS" OFLAG="$FFLAGS" OFLAG_1="${FFLAGS/O2/O1}" OFLAG_2="$FFLAGS" '
|
||||
buildopts += 'OFLAG_3="${FFLAGS/O2/O3}" CFLAGS_LIB="$CFLAGS" FFLAGS_LIB="$FFLAGS" BLAS="$LIBBLAS" '
|
||||
buildopts += 'LAPACK="$LIBLAPACK" BLACS="$LIBBLACS" SCALAPACK="$LIBSCALAPACK"'
|
||||
|
||||
# https://www.vasp.at/wiki/index.php/Validation_tests
|
||||
runtest = 'test'
|
||||
|
||||
parallel = 1
|
||||
|
||||
files_to_copy = [(['bin/vasp_' + x for x in _targets], 'bin')]
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/vasp_' + x for x in _targets],
|
||||
'dirs': []
|
||||
}
|
||||
|
||||
modluafooter = 'add_property("state","license")'
|
||||
|
||||
moduleclass = 'phys'
|
67
v/VASP/VASP-6.2.1-intel-2020b-mkl=sequential-karolina.eb
Normal file
67
v/VASP/VASP-6.2.1-intel-2020b-mkl=sequential-karolina.eb
Normal file
@ -0,0 +1,67 @@
|
||||
# IT4Innovations 2021
|
||||
# LK
|
||||
|
||||
easyblock = 'MakeCp'
|
||||
|
||||
name = 'VASP'
|
||||
version = '6.2.1'
|
||||
versionsuffix = '-mkl=sequential-march=znver2'
|
||||
|
||||
homepage = 'http://www.vasp.at'
|
||||
description = """The Vienna Ab initio Simulation Package (VASP) is a local_computer program for atomic scale
|
||||
materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics,
|
||||
from first principles.
|
||||
|
||||
To use VASP, You need academic licenses from University of Wiena. Follow the instructions https://www.vasp.at/index.php/faqs.
|
||||
|
||||
Then send us please a list of authorized users and their ID for which you need this access. Please use only http://support.it4i.cz/rt. We are responsible to verify your licenses. After succesfull verification You will be granted to use VASP in our enviroment."""
|
||||
|
||||
toolchain = {'name': 'intel', 'version': '2020b'}
|
||||
toolchainopts = {'pic': True, 'usempi': True}
|
||||
|
||||
# Vasp is proprietary software, see http://www.vasp.at/index.php/faqs on
|
||||
# how to get access to the code
|
||||
sources = ['%(namelower)s.%(version)s.tgz']
|
||||
|
||||
prebuildopts = 'cp arch/makefile.include.linux_intel ./makefile.include && '
|
||||
|
||||
# AMD/intel cpu
|
||||
import os
|
||||
if os.environ.get("CLUSTERNAME") in ["KAROLINA"]:
|
||||
prebuildopts += 'sed -i "s|-xHOST|-march=znver2|" makefile.include && '
|
||||
|
||||
# path to libfftw3xf_intel.a is hardcoded in makefile.include
|
||||
prebuildopts += 'sed -i "s|\$(MKLROOT)/interfaces/fftw3xf|\$(FFTW_LIB_DIR)|" makefile.include && '
|
||||
|
||||
# remove mkl flag to prevent mixing dynamic libs with the static libs in
|
||||
# LIBBLACS/SCALAPACK
|
||||
prebuildopts += 'sed -i "s|-mkl=sequential ||" makefile.include && '
|
||||
|
||||
# OFLAG = -O2 -xAVX
|
||||
prebuildopts += 'sed -i "s|OFLAG = -O2|OFLAG = -O3 -ip -march=znver2|" makefile.include && '
|
||||
|
||||
# objects add MKLROOT
|
||||
prebuildopts += 'sed -i "s|OBJECTS = fftmpiw.o fftmpi_map.o fft3dlib.o fftw3d.o|OBJECTS = fftmpiw.o fftmpi_map.o fft3dlib.o fftw3d.o \$(MKLROOT)/lib/intel64_lin/libfftw3xf_intel.a|" makefile.include && '
|
||||
|
||||
prebuildopts += 'sed -i "s|FFLAGS = -assume byterecl -w|FFLAGS = -FR -assume byterecl|" makefile.include && '
|
||||
prebuildopts += 'sed -i "s|BLAS =|BLAS = -mkl=sequential|" makefile.include && '
|
||||
|
||||
# VASP uses LIBS as a list of folders
|
||||
prebuildopts += 'unset LIBS && '
|
||||
|
||||
#prebuildopts += 'exit 1'
|
||||
|
||||
buildopts = 'std gam ncl ' #BLACS="$LIBBLACS" SCALAPACK="$LIBSCALAPACK" '
|
||||
|
||||
parallel = 1
|
||||
|
||||
files_to_copy = [(['bin/vasp_std', 'bin/vasp_gam', 'bin/vasp_ncl'], 'bin')]
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/vasp_std', 'bin/vasp_gam', 'bin/vasp_ncl'],
|
||||
'dirs': []
|
||||
}
|
||||
|
||||
modluafooter = 'add_property("state","license")'
|
||||
|
||||
moduleclass = 'phys'
|
30
x/XCrySDen/XCrySDen-1.6.2-intel-2020b.eb
Normal file
30
x/XCrySDen/XCrySDen-1.6.2-intel-2020b.eb
Normal file
@ -0,0 +1,30 @@
|
||||
# IT4Innovations 2021
|
||||
# JK
|
||||
|
||||
name = 'XCrySDen'
|
||||
version = '1.6.2'
|
||||
|
||||
homepage = "http://www.xcrysden.org/"
|
||||
description = """XCrySDen is a crystalline and molecular structure visualisation program aiming
|
||||
at display of isosurfaces and contours, which can be superimposed on crystalline structures and
|
||||
interactively rotated and manipulated."""
|
||||
|
||||
toolchain = {'name': 'intel', 'version': '2020b'}
|
||||
toolchainopts = {'vectorize': False}
|
||||
|
||||
source_urls = ["http://www.xcrysden.org/download/"]
|
||||
sources = [SOURCELOWER_TAR_GZ]
|
||||
|
||||
local_tcltk_ver = '8.6.11'
|
||||
dependencies = [
|
||||
('Tcl', local_tcltk_ver),
|
||||
('Tk', local_tcltk_ver),
|
||||
('Togl', '2.0'),
|
||||
('X11', '20201008'),
|
||||
('libGLU', '9.0.1'),
|
||||
('bwidget', '1.9.14'),
|
||||
]
|
||||
|
||||
parallel = 1
|
||||
|
||||
moduleclass = 'vis'
|
@ -41,7 +41,7 @@ buildopts = 'all'
|
||||
parallel = 1
|
||||
|
||||
files_to_copy = [
|
||||
(['bin/*'], 'bin'),
|
||||
(['sbin/*'], 'bin'),
|
||||
(['lib/*.a'], 'lib'),
|
||||
(['include/*'], 'include'),
|
||||
]
|
||||
|
Loading…
x
Reference in New Issue
Block a user