diff --git a/a/Automake/Automake-1.16.1.eb b/a/Automake/Automake-1.16.1.eb new file mode 100644 index 00000000..0c6deb06 --- /dev/null +++ b/a/Automake/Automake-1.16.1.eb @@ -0,0 +1,27 @@ +# IT4Innovations 2018 + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.16.1" + +homepage = 'http://www.gnu.org/software/automake/automake.html' + +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['https://mirror.checkdomain.de/gnu/automake/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['608a97523f97db32f1f5d5615c98ca69326ced2054c9f82e65bade7fc4c9dea8'] + +dependencies = [ + ('Autoconf', '2.69'), +] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/a/Autotools/Autotools-20180311.eb b/a/Autotools/Autotools-20180311.eb new file mode 100644 index 00000000..29b152fb --- /dev/null +++ b/a/Autotools/Autotools-20180311.eb @@ -0,0 +1,26 @@ +# IT4Innovations 2018 + +easyblock = 'Bundle' + +name = 'Autotools' +version = '20180311' # date of the most recent change + +homepage = 'http://autotools.io' + +description = """ + This bundle collect the standard GNU build tools: Autoconf, Automake + and libtool +""" + +toolchain = {'name': 'dummy', 'version': ''} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.16.1'), # 20180311 + ('libtool', '2.4.6'), # 20150215 +] + +# Pure bundle -- no need to specify 'binutils' used when building GCCcore +# toolchain as build dependency + +moduleclass = 'devel' diff --git a/h/hwloc/hwloc-1.11.7-GCC-6.3.0-2.27.eb b/h/hwloc/hwloc-1.11.7-GCC-6.3.0-2.27.eb index 8f0b8dee..1c079df9 100644 --- a/h/hwloc/hwloc-1.11.7-GCC-6.3.0-2.27.eb +++ b/h/hwloc/hwloc-1.11.7-GCC-6.3.0-2.27.eb @@ -1,23 +1,27 @@ -easyblock = 'ConfigureMake' - -name = 'hwloc' -version = '1.11.7' - -homepage = 'http://www.open-mpi.org/projects/hwloc/' -description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction -(across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including -NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various -system attributes such as cache and memory information as well as the locality of I/O devices such as -network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering -information about modern computing hardware so as to exploit it accordingly and efficiently.""" - -toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'} - -source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] -sources = [SOURCE_TAR_GZ] - -dependencies = [('numactl', '2.0.11')] - -configopts = "--enable-libnuma=$EBROOTNUMACTL" - +# IT4Innovations 2018 + +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.11.7' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction +(across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including +NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various +system attributes such as cache and memory information as well as the locality of I/O devices such as +network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering +information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('numactl', '2.0.11', '', ('GCCcore', '6.3.0')), +] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + moduleclass = 'system' diff --git a/h/hwloc/hwloc-1.11.7-PGI-18.5-GCC-6.3.0-2.27.eb b/h/hwloc/hwloc-1.11.7-PGI-18.5-GCC-6.3.0-2.27.eb new file mode 100644 index 00000000..de01852c --- /dev/null +++ b/h/hwloc/hwloc-1.11.7-PGI-18.5-GCC-6.3.0-2.27.eb @@ -0,0 +1,28 @@ +# IT4Innovations 2018 + +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.11.7' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction +(across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including +NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various +system attributes such as cache and memory information as well as the locality of I/O devices such as +network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering +information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'PGI', 'version': '18.5-GCC-6.3.0-2.27'} +toolchainopts = {'pic': True} + +source_urls = ['https://download.open-mpi.org/release/hwloc/v1.11/'] +sources = ['hwloc-1.11.7.tar.gz'] + +dependencies = [ + ('numactl', '2.0.11', '', ('GCCcore', '6.3.0')) +] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +moduleclass = 'system' diff --git a/j/JAVA/JAVA-1.9.0+181-PGI-18.5-GCC-6.3.0-2.27.eb b/j/JAVA/JAVA-1.9.0+181-PGI-18.5-GCC-6.3.0-2.27.eb new file mode 100644 index 00000000..040448cd --- /dev/null +++ b/j/JAVA/JAVA-1.9.0+181-PGI-18.5-GCC-6.3.0-2.27.eb @@ -0,0 +1,13 @@ +name = 'JAVA' +version = "1.9.0+181" + +homepage = 'http://java.com/' +description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers.""" + +toolchain = {'name': 'PGI', 'version': '18.5-GCC-6.3.0-2.27'} + +# download the tar.gz directly from http://www.oracle.com/technetwork/java/javase/downloads/index.html +sources = ['jdk-9_linux-x64_bin.tar.gz'] + +moduleclass = 'lang' diff --git a/j/Java/Java-1.8.0_121.eb b/j/JAVA/Java-1.8.0_121.eb similarity index 100% rename from j/Java/Java-1.8.0_121.eb rename to j/JAVA/Java-1.8.0_121.eb diff --git a/j/Java/Java-1.8.0_144.eb b/j/JAVA/Java-1.8.0_144.eb similarity index 100% rename from j/Java/Java-1.8.0_144.eb rename to j/JAVA/Java-1.8.0_144.eb diff --git a/j/Java/Java-1.8.0_51.eb b/j/JAVA/Java-1.8.0_51.eb similarity index 100% rename from j/Java/Java-1.8.0_51.eb rename to j/JAVA/Java-1.8.0_51.eb diff --git a/j/Java/Java-1.9.0+181.eb b/j/JAVA/Java-1.9.0+181.eb similarity index 100% rename from j/Java/Java-1.9.0+181.eb rename to j/JAVA/Java-1.9.0+181.eb diff --git a/n/numactl/numactl-2.0.11-GCC-6.3.0-2.27.eb b/n/numactl/numactl-2.0.11-GCC-6.3.0-2.27.eb index ee922f33..64b22501 100644 --- a/n/numactl/numactl-2.0.11-GCC-6.3.0-2.27.eb +++ b/n/numactl/numactl-2.0.11-GCC-6.3.0-2.27.eb @@ -1,23 +1,27 @@ -easyblock = 'ConfigureMake' - -name = 'numactl' -version = '2.0.11' - -homepage = 'http://oss.sgi.com/projects/libnuma/' -description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. -It does this by supplying a NUMA memory policy to the operating system before running your program. -The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" - -toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'} +# IT4Innovations 2018 + +easyblock = 'ConfigureMake' + +name = 'numactl' +version = '2.0.11' + +homepage = 'http://oss.sgi.com/projects/libnuma/' +description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. +It does this by supplying a NUMA memory policy to the operating system before running your program. +The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" + +toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = [SOURCE_TAR_GZ] +checksums = ['3e099a59b2c527bcdbddd34e1952ca87462d2cef4c93da9b0bc03f02903f7089'] + +preconfigopts = "./autogen.sh && " + +sanity_check_paths = { + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} -source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -sources = [SOURCE_TAR_GZ] - -checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] - -sanity_check_paths = { - 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], - 'dirs': ['share/man', 'include'] -} - moduleclass = 'tools' diff --git a/n/numactl/numactl-2.0.11-GCCcore-6.3.0.eb b/n/numactl/numactl-2.0.11-GCCcore-6.3.0.eb new file mode 100644 index 00000000..0eb6b133 --- /dev/null +++ b/n/numactl/numactl-2.0.11-GCCcore-6.3.0.eb @@ -0,0 +1,32 @@ +# IT4Innovations 2018 + +easyblock = 'ConfigureMake' + +name = 'numactl' +version = '2.0.11' + +homepage = 'http://oss.sgi.com/projects/libnuma/' +description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. +It does this by supplying a NUMA memory policy to the operating system before running your program. +The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v2.0.12.tar.gz'] +checksums = ['a4d2292af28fb20007ddb9706f8bb1cc'] + +builddependencies = [ + ('binutils', '2.27'), + ('Autotools', '20180311', '', True), +] + +preconfigopts = "./autogen.sh && " + +sanity_check_paths = { + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} + +moduleclass = 'tools' diff --git a/o/OpenMPI/OpenMPI-1.10.7-PGI-18.5-GCC-6.3.0-2.27.eb b/o/OpenMPI/OpenMPI-1.10.7-PGI-18.5-GCC-6.3.0-2.27.eb new file mode 100644 index 00000000..7b9bbedf --- /dev/null +++ b/o/OpenMPI/OpenMPI-1.10.7-PGI-18.5-GCC-6.3.0-2.27.eb @@ -0,0 +1,51 @@ +# IT4Innovations 2018 + +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.10.7' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'PGI', 'version': '18.5-GCC-6.3.0-2.27'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +dependencies = [('hwloc', '1.11.7')] + +configopts = '--with-threads=posix --enable-shared --enable-static --enable-mpi-thread-multiple --with-verbs ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading +configopts += '--with-tm=/opt/pbs/default ' # Enable PBS +configopts += '--with-cxxrtlib="-lgcc_s -lstdc++"' # for vt-mpi-unify + +# for PBS Pro 13 +preconfigopts = 'export LIBS="-ldl" && ' + +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] + +libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in libs] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +sanity_check_commands = [ + ('mpicc --version | grep pgcc', ''), + ('mpicxx --version | grep pgc++', ''), + ('mpifort --version | grep pgfortran', ''), +] + +modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx4_0', + 'OMPI_MCA_oob_tcp_if_include': '10.0.0.0/8', +} + +moduleclass = 'mpi' diff --git a/o/OpenMPI/OpenMPI-1.10.7-PGI-18.5-GCC-6.3.0-2.27.env b/o/OpenMPI/OpenMPI-1.10.7-PGI-18.5-GCC-6.3.0-2.27.env new file mode 100644 index 00000000..fafecf5d --- /dev/null +++ b/o/OpenMPI/OpenMPI-1.10.7-PGI-18.5-GCC-6.3.0-2.27.env @@ -0,0 +1,19 @@ +#!/bin/bash +# script to set up build environment as defined by EasyBuild v3.6.2 for OpenMPI-1.10.7-PGI-18.5-GCC-6.3.0-2.27.eb +# usage: source OpenMPI-1.10.7-PGI-18.5-GCC-6.3.0-2.27.env + +# toolchain & dependency modules +module load PGI/18.5-GCC-6.3.0-2.27 +module load hwloc/1.11.7-PGI-18.5-GCC-6.3.0-2.27 +module load Java/1.9.0+181 + +# build environment +export CC='pgcc' +export CPPFLAGS='-I/apps/all/hwloc/1.11.7-PGI-18.5-GCC-6.3.0-2.27/include -I/apps/all/Java/1.9.0+181/include' +export CXX='pgc++' +export F77='pgf77' +export F90='pgfortran' +export FC='pgfortran' +export LDFLAGS='-L/apps/all/hwloc/1.11.7-PGI-18.5-GCC-6.3.0-2.27/lib -L/apps/all/Java/1.9.0+181/lib' +export OPTFLAGS='-O3' +export LIBS="-ldl" diff --git a/t/TRIQS/TRIQS-1.4.1-foss-2017a.eb b/t/TRIQS/TRIQS-1.4.1-foss-2017a.eb index 02154eac..af573a7e 100644 --- a/t/TRIQS/TRIQS-1.4.1-foss-2017a.eb +++ b/t/TRIQS/TRIQS-1.4.1-foss-2017a.eb @@ -1,6 +1,7 @@ # IT4Innovations 2017 # cthyb extension installed manually https://triqs.ipht.cnrs.fr/1.4/applications/cthyb/install.html +# som extension installed with EB s/som/som-1.1-foss-2017a.eb easyblock = 'CMakeMake'