mirror of
https://code.it4i.cz/sccs/easyconfigs-it4i.git
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new file: a/AOCC/AOCC-2.1.0-GCCcore-10.2.0.eb
new file: a/AOCL/AOCL-2.1-GCCcore-10.2.0.eb new file: a/AOCL/AOCL-2.2-4-GCCcore-10.2.0.eb new file: g/glibc/glibc-2.30-GCCcore-10.2.0.eb new file: m/make/make-4.2.1-GCCcore-10.2.0.eb new file: o/OpenCoarrays/OpenCoarrays-2.9.2-gompi-2020b.eb new file: o/OpenMPI/OpenMPI-4.1.1-AOCC-3.1.0.eb new file: p/PETSc/PETSc-3.14.4-intel-2020b.eb new file: r/R/R-4.1.0-foss-2021a.eb
This commit is contained in:
parent
e40aef1f8c
commit
992a427a36
27
a/AOCC/AOCC-2.1.0-GCCcore-10.2.0.eb
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a/AOCC/AOCC-2.1.0-GCCcore-10.2.0.eb
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#
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# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
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#
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# Author: Robert Mijakovic <robert.mijakovic@lxp.lu>
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# reciPY derived from preexisting reciPy for GCCcore-9.3.0.
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#
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name = 'AOCC'
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version = '2.1.0'
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homepage = 'https://developer.amd.com/amd-aocc/'
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description = "AMD Optimized C/C++ & Fortran compilers (AOCC) based on LLVM 11.0"
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# Clang also depends on libstdc++ during runtime, but this dependency is
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# already specified as the toolchain.
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toolchain = {'name': 'GCCcore', 'version': '10.2.0'}
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source_urls = ['http://developer.amd.com/wordpress/media/files/']
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sources = ['aocc-compiler-%(version)s.tar']
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dependencies = [
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('binutils', '2.35'),
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('ncurses', '6.2'),
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('zlib', '1.2.11'),
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('libxml2', '2.9.10'),
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]
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moduleclass = 'compiler'
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25
a/AOCL/AOCL-2.1-GCCcore-10.2.0.eb
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25
a/AOCL/AOCL-2.1-GCCcore-10.2.0.eb
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# IT4Innovations
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# LK 2021
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name = 'AOCL'
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version = '2.1'
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homepage = 'https://developer.amd.com/amd-aocc/'
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description = """AMD provides a free set of thoroughly optimized and threaded math routines for HPC,
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scientific, engineering and related compute-intensive applications. ACML is ideal for weather modeling,
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computational fluid dynamics, financial analysis, oil and gas applications and more. """
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toolchain = {'name': 'GCCcore', 'version': '10.2.0'}
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source_urls = ['http://developer.amd.com/wordpress/media/files/']
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sources = ['aocl-linux-aocc-%(version)s.tar.gz']
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dependencies = [
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('binutils', '2.35'),
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('ncurses', '6.2'),
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('zlib', '1.2.11'),
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('libxml2', '2.9.10'),
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('AOCC', '2.1.0'),
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]
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moduleclass = 'numlib'
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25
a/AOCL/AOCL-2.2-4-GCCcore-10.2.0.eb
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25
a/AOCL/AOCL-2.2-4-GCCcore-10.2.0.eb
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# IT4Innovations
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# LK 2021
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name = 'AOCL'
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version = '2.2-4'
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homepage = 'https://developer.amd.com/amd-aocc/'
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description = """AMD provides a free set of thoroughly optimized and threaded math routines for HPC,
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scientific, engineering and related compute-intensive applications. ACML is ideal for weather modeling,
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computational fluid dynamics, financial analysis, oil and gas applications and more. """
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toolchain = {'name': 'GCCcore', 'version': '10.2.0'}
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source_urls = ['http://developer.amd.com/wordpress/media/files/']
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sources = ['aocl-linux-aocc-%(version)s.tar.gz']
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dependencies = [
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('binutils', '2.35'),
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('ncurses', '6.2'),
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('zlib', '1.2.11'),
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('libxml2', '2.9.10'),
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('AOCC', '3.1.0'),
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]
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moduleclass = 'numlib'
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37
g/glibc/glibc-2.30-GCCcore-10.2.0.eb
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g/glibc/glibc-2.30-GCCcore-10.2.0.eb
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# IT4Innovations
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# LK 2021
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easyblock = 'ConfigureMake'
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name = 'glibc'
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version = '2.30'
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homepags = 'https://www.gnu.org/software/libc/'
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description = """The GNU C Library project provides the core libraries for the GNU system and GNU/Linux systems,
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as well as many other systems that use Linux as the kernel."""
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toolchain = {'name': 'GCCcore', 'version': '10.2.0'}
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source_urls = ['https://ftp.gnu.org/gnu/glibc/']
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sources = ['glibc-%(version)s.tar.xz']
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checksums = ['e2c4114e569afbe7edbc29131a43be833850ab9a459d81beb2588016d2bbb8af']
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builddependencies = [
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('binutils', '2.35'),
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('make', '4.2.1'),
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('texinfo', '6.7'),
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('Bison', '3.7.1'),
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('Python', '3.8.6'),
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]
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preconfigopts = 'mkdir obj && cd obj && CC="$CC -fuse-ld=bfd --disable-werror" '
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configure_cmd_prefix = '../'
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prebuildopts = "cd obj && "
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preinstallopts = prebuildopts
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sanity_check_paths = {
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'files': ['bin/ldd', 'lib/libc.a', 'lib/libc.%s' % SHLIB_EXT],
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'dirs': ['etc', 'libexec', 'include', 'sbin', 'share'],
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}
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moduleclass = 'lib'
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41
m/make/make-4.2.1-GCCcore-10.2.0.eb
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m/make/make-4.2.1-GCCcore-10.2.0.eb
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# IT4Innovations
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# LK 2021
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easyblock = 'ConfigureMake'
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name = 'make'
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version = '4.2.1'
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homepage = 'https://www.gnu.org/software/make/make.html'
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description = "GNU version of make utility"
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toolchain = {'name': 'GCCcore', 'version': '10.2.0'}
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source_urls = [GNU_SOURCE]
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sources = [SOURCE_TAR_BZ2]
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patches = ['%(name)s-%(version)s_RHEL8.patch']
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checksums = [
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'd6e262bf3601b42d2b1e4ef8310029e1dcf20083c5446b4b7aa67081fdffc589', # make-4.2.1.tar.bz2
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'ca9daea8cfdb7de55c5a973e283a5aca35fb11d9eb37cd3bd25f95557f2e6479', # make-4.2.1_RHEL8.patch
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]
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builddependencies = [
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# needs specifically aclocal 1.15
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('Automake', '1.16.2'),
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('binutils', '2.35'),
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('pkg-config', '0.29.2'),
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]
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postinstallcmds = ["cd %(installdir)s/bin && ln -s make gmake"]
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sanity_check_paths = {
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'files': ['bin/gmake', 'bin/make'],
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'dirs': []
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}
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sanity_check_commands = [
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"gmake --help",
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"make --help",
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]
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moduleclass = 'devel'
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36
o/OpenCoarrays/OpenCoarrays-2.9.2-gompi-2020b.eb
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o/OpenCoarrays/OpenCoarrays-2.9.2-gompi-2020b.eb
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# IT4Innovations
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# LK 2021
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easyblock = 'CMakeMake'
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name = 'OpenCoarrays'
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version = '2.9.2'
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homepage = 'https://github.com/sourceryinstitute/opencoarrays'
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description = """OpenCoarrays is an open-source software project that supports
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the coarray Fortran (CAF) parallel programming features of the Fortran 2008
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standard and several features proposed for Fortran 2015 in the draft Technical
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Specification TS 18508 Additional Parallel Features in Fortran."""
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toolchain = {'name': 'gompi', 'version': '2020b'}
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toolchainopts = {'pic': True}
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source_urls = ['https://github.com/sourceryinstitute/opencoarrays/releases/download/%(version)s']
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sources = [SOURCE_TAR_GZ]
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patches = ['OpenCoarrays-2.2.0-cafrun-OpenMPI-mpiexec.patch']
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checksums = [
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'6c200ca49808c75b0a2dfa984304643613b6bc77cc0044bee093f9afe03698f7', # OpenCoarrays-2.9.2.tar.gz
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# OpenCoarrays-2.2.0-cafrun-OpenMPI-mpiexec.patch
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'5d410cc78c80dfa54237f874a0627260ad0b4b2f272d8f0f9ce317375bcc796f',
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]
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separate_build_dir = True
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builddependencies = [('CMake', '3.18.4')]
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sanity_check_paths = {
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'files': ['bin/caf', 'bin/cafrun', 'include/opencoarrays.mod', ('lib/libcaf_mpi.a', 'lib64/libcaf_mpi.a')],
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'dirs': [],
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}
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moduleclass = 'mpi'
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65
o/OpenMPI/OpenMPI-4.1.1-AOCC-3.1.0.eb
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o/OpenMPI/OpenMPI-4.1.1-AOCC-3.1.0.eb
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@ -0,0 +1,65 @@
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# IT4Innovations 2021
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# LK
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easyblock = 'ConfigureMake'
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name = 'OpenMPI'
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version = '4.1.1'
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homepage = 'http://www.open-mpi.org/'
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description = """The Open MPI Project is an open source MPI-2 implementation."""
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toolchain = {'name': 'AOCC', 'version': '3.1.0'}
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source_urls = ['https://github.com/open-mpi/ompi/archive/refs/tags/']
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sources = ['v%(version)s.tar.gz']
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dependencies = [
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('hwloc', '2.2.0'),
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('UCX', '1.9.0',),
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]
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preconfigopts = './autogen.pl && '
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configopts = '--enable-shared --enable-mpi-thread-multiple --with-verbs '
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configopts += '--enable-mpirun-prefix-by-default '
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configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support
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configopts += '--with-tm=/opt/pbs ' # Enable PBS
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configopts += '--enable-mpi-cxx ' # Enable building the C++ MPI bindings
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configopts += '--with-ucx=$EBROOTUCX '
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osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')]
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postinstallcmds = [
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'echo "# By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default." >> %(installdir)s/etc/openmpi-mca-params.conf',
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'echo "btl_openib_allow_ib = true" >> %(installdir)s/etc/openmpi-mca-params.conf',
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]
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libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"]
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sanity_check_paths = {
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'files': [
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"bin/%s" %
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binfile for binfile in [
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"ompi_info", "opal_wrapper", "orterun"]] + [
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"lib/lib%s.%s" %
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(libfile, SHLIB_EXT) for libfile in libs] + [
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"include/%s.h" %
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x for x in [
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"mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], 'dirs': [], }
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import os
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if os.environ.get("CLUSTERNAME") in ["BARBORA"]:
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modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx5_0',
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'OMPI_MCA_btl_tcp_if_include': '10.33.4.0/24',
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'OMPI_MCA_orte_base_help_aggregate': '0',
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}
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elif os.environ.get("CLUSTERNAME") in ["KAROLINA"]:
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modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx5_0',
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'OMPI_MCA_orte_base_help_aggregate': '0',
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}
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else:
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modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx4_0',
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'OMPI_MCA_oob_tcp_if_include': '10.0.0.0/8',
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}
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moduleclass = 'mpi'
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47
p/PETSc/PETSc-3.14.4-intel-2020b.eb
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47
p/PETSc/PETSc-3.14.4-intel-2020b.eb
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name = 'PETSc'
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version = '3.14.4'
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homepage = 'https://www.mcs.anl.gov/petsc'
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description = """PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the
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scalable (parallel) solution of scientific applications modeled by partial differential equations."""
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toolchain = {'name': 'intel', 'version': '2020b'}
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toolchainopts = {'openmp': True, 'usempi': True, 'pic': True}
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source_urls = [
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'https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/',
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'ftp://ftp.mcs.anl.gov/pub/petsc/release-snapshots/',
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]
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sources = [SOURCELOWER_TAR_GZ]
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patches = [
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'PETSc_ranlib-fix.patch',
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]
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checksums = [
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'2fb431434b91e054cc3a176f7cb008951088243b5dcb3efc8eec8ce589a2658e', # petsc-3.14.4.tar.gz
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'64cf9d5008d5e92117e65bdec5316d991b6a6b8c8ecf7ea46eb790a498266297', # PETSc_ranlib-fix.patch
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]
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builddependencies = [('CMake', '3.18.4')]
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dependencies = [
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('Python', '3.8.6'),
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('SciPy-bundle', '2020.11'),
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('Boost', '1.74.0'),
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('METIS', '5.1.0'),
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('SCOTCH', '6.1.0'),
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('MUMPS', '5.3.5', '-metis'),
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('SuiteSparse', '5.8.1', '-METIS-5.1.0'),
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('Hypre', '2.20.0'),
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]
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# enabling --with-mpi4py seems to be totally broken, leads to make errors like:
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# No rule to make target 'mpi4py-build'
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configopts = '--LIBS="$LIBS -lrt" --with-mpi4py=0 '
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shared_libs = 1
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# only required when building PETSc in a SLURM job environment
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# configopts += '--with-batch=1 --known-mpi-shared-libraries=1 --known-64-bit-blas-indices=0 '
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# prebuildopts = "srun ./conftest-arch-linux2-c-opt && ./reconfigure-arch-linux2-c-opt.py && "
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moduleclass = 'numlib'
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3000
r/R/R-4.1.0-foss-2021a.eb
Normal file
3000
r/R/R-4.1.0-foss-2021a.eb
Normal file
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