new file: a/ALAMODE/ALAMODE-0.9.8-intel-2017a.eb

new file:   c/Clang/Clang-5.0.0-GCC-6.3.0-2.27.eb
	new file:   d/DynaPhoPy/DynaPhoPy-1.15.eb
	new file:   l/LLVM/LLVM-5.0.0-GCC-6.3.0-2.27.eb
	new file:   n/Netgen/Netgen-5.3.1.eb
	new file:   n/Netgen/Netgen-6.0-beta.eb
	new file:   n/Netgen/ng.patch
	new file:   s/seekpath/seekpath-1.5.0-Python-2.7.13-base.eb
	new file:   t/Tcl/Tcl-8.6.7-GCC-6.3.0-2.27.eb
	modified:   t/Tk/Tk-8.6.6.eb
	new file:   t/Tk/Tk-8.6.7-GCC-6.3.0-2.27.eb
	deleted:    n/Netgen/Netgen-6.3.eb

a/ALAMODE/ALAMODE-0.9.8-intel-2017a.eb

@@ -0,0 +1,44 @@
+easyblock = 'CmdCp'
+
+name = 'ALAMODE'
+version = '0.9.8'
+
+homepage = 'http://alamode.readthedocs.io/'
+description = """ALAMODE is an open source software designed for analyzing lattice anharmonicity 
+and lattice thermal conductivity of solids. By using an external DFT package such as VASP and 
+Quantum ESPRESSO, you can extract harmonic and anharmonic force constants straightforwardly 
+with ALAMODE. Using the calculated anharmonic force constants, you can also estimate lattice 
+thermal conductivity, phonon linewidth, and other anharmonic phonon properties from first principles."""
+
+toolchain = {'name': 'intel', 'version': '2017a'}
+
+source_urls = [SOURCEFORGE_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [
+     ('Boost', '1.63.0'),
+     ('Python', '2.7.13-base', '', True),
+     ('matplotlib', '2.0.2-Python-2.7.13-base', '', True),
+     ('numpy', '1.13.0-Python-2.7.13-base', '', True),
+]
+
+commands = "cd alm && mv Makefile.linux Makefile && make && cd .. && "
+commands += "cd anphon && mv Makefile.linux Makefile && make && cd .. && "
+commands += "cd tools && make "
+
+cmds_map = [('.*', commands)]
+
+files_to_copy = [
+	(['alm/alm', 'anphon/anphon'], 'bin'),
+	(['tools/analyze_phonons', 'tools/qe2alm'], 'tools'),
+	(['tools/*.py'], 'tools'),
+]
+
+modextrapaths = {'PATH': 'tools'}
+
+sanity_check_paths = {
+    'files': ['bin/alm', 'bin/anphon'],
+    'dirs': []
+}
+
+moduleclass = 'phys'

c/Clang/Clang-5.0.0-GCC-6.3.0-2.27.eb

@@ -0,0 +1,45 @@
+name = "Clang"
+version = "5.0.0"
+
+homepage = "http://clang.llvm.org/"
+description = """C, C++, Objective-C compiler, based on LLVM.  Does not
+ include C++ standard library -- use libstdc++ from GCC."""
+
+# Clang also depends on libstdc++ during runtime, but this dependency is
+# already specified as the toolchain.
+toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'}
+# Do not set optarch to True: it will cause the build to fail
+toolchainopts = {'optarch': False, 'pic': True}
+
+source_urls = ["http://llvm.org/releases/%(version)s"]
+sources = [
+    "llvm-%(version)s.src.tar.xz",
+    "cfe-%(version)s.src.tar.xz",
+    "compiler-rt-%(version)s.src.tar.xz",
+    "polly-%(version)s.src.tar.xz",
+    "openmp-%(version)s.src.tar.xz",
+    "libcxx-5.0.0.src.tar.xz",
+    "libcxxabi-5.0.0.src.tar.xz",
+    "clang-tools-extra-5.0.0.src.tar.xz",
+]
+
+dependencies = [
+    ('GMP', '6.1.2', '', True),
+    ('ISL', '0.15', '', True),
+]
+
+builddependencies = [
+    ('CMake', '3.9.1', '', True),
+    ('Python', '2.7.13', '', True),
+    ('libxml2', '2.9.4', '', True),
+]
+
+separate_build_dir = True
+
+assertions = True
+
+usepolly = True
+
+build_targets = ['X86']
+
+moduleclass = 'compiler'

d/DynaPhoPy/DynaPhoPy-1.15.eb

@@ -0,0 +1,37 @@
+easyblock = 'PythonPackage'
+
+name = 'DynaPhoPy'
+version = '1.15'
+versionsuffix = '-intel-2017a-Python-%(pyver)s-base'
+
+homepage = 'https://github.com/abelcarreras/DynaPhoPy'
+description = """Software to calculate crystal microscopic anharmonic properties from molecular dynamics (MD) using
+the normal-mode-decomposition technique. These properties include the phonon frequency shifts and linewidths, as well
+as the renormalized force constanst and thermal properties by using quasiparticle theory. This code includes
+interfaces for MD outputs from VASP and LAMMPS .PHONOPY code is used to obtain harmonic phonon modes."""
+
+toolchain = {'name': 'dummy', 'version': ''}
+
+source_urls = ['https://github.com/abelcarreras/DynaPhoPy/archive/']
+sources = ['%(version)s.tar.gz']
+
+dependencies = [
+    ('Python', '2.7.13', '-base', True),
+    ('phonopy', '1.11.12.5', '-Python-2.7.13-base', True ),
+    ('numpy', '1.13.0', '-Python-2.7.13-base', True),
+    ('scipy', '0.19.1', '-Python-2.7.13-base', True),
+    ('matplotlib', '2.0.2', '-Python-2.7.13-base', True),
+    ('seekpath', '1.5.0', '-Python-2.7.13-base', True),
+    ('PyYAML', '3.12', '-Python-2.7.13-base', True),
+    ('intel', '2017a'),
+]
+
+use_pip = True
+unpack_sources = False
+
+sanity_check_paths = {
+    'files': [],
+    'dirs': ['lib/python%(pyshortver)s/site-packages/dynaphopy'],
+}
+
+moduleclass = 'phys'

l/LLVM/LLVM-5.0.0-GCC-6.3.0-2.27.eb

@@ -0,0 +1,40 @@
+easyblock = 'CMakeMake'
+
+name = 'LLVM'
+version = '5.0.0'
+
+homepage = "http://llvm.org/"
+description = """The LLVM Core libraries provide a modern source- and target-independent
+ optimizer, along with code generation support for many popular CPUs
+ (as well as some less common ones!) These libraries are built around a well
+ specified code representation known as the LLVM intermediate representation
+ ("LLVM IR"). The LLVM Core libraries are well documented, and it is
+ particularly easy to invent your own language (or port an existing compiler)
+ to use LLVM as an optimizer and code generator."""
+
+toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'}
+
+source_urls = ["http://llvm.org/releases/%(version)s"]
+sources = ["llvm-%(version)s.src.tar.xz"]
+
+builddependencies = [
+    ('CMake', '3.9.1', '', True),
+    ('Python', '3.6.1', '', True),
+]
+
+dependencies = [
+    ('ncurses', '6.0', '', True),
+]
+
+configopts = '-DBUILD_SHARED_LIBS=ON '
+# required to install extra tools in bin/
+configopts += "-DLLVM_INSTALL_UTILS=ON "
+
+sanity_check_paths = {
+    'files': ['bin/llvm-ar', 'bin/FileCheck'],
+    'dirs': ['include/llvm', 'include/llvm-c'],
+}
+
+separate_build_dir = True
+
+moduleclass = 'compiler'

n/Netgen/Netgen-5.3.1.eb

@@ -0,0 +1,31 @@
+easyblock = 'ConfigureMake'
+
+name = 'Netgen'
+version = "5.3.1"
+
+homepage = 'https://ngsolve.org/'
+description = """Netgen/NGSolve is a high performance multiphysics finite element software. It is widely used to
+analyze models from solid mechanics, fluid dynamics and electromagnetics. Due to its flexible Python interface
+new physical equations and solution algorithms can be implemented easily."""
+
+toolchain = {'name': 'intel', 'version': '2017a'}
+
+source_urls = ['https://downloads.sourceforge.net/project/netgen-mesher/netgen-mesher/5.3/']
+sources = ['netgen-5.3.1.tar.gz']
+
+dependencies = [
+    ('Togl', '1.7', '', True),
+    ('Tk', '8.6.5', '', True),
+    ('Tcl','8.6.5', '', True),
+]
+
+configopts = '--with-tcl=$EBROOTTCL/lib --with-tk=$EBROOTTK/lib --with-togl=$EBROOTTOGL CXX=mpicxx CC=mpicc'
+
+prebuildopts = 'patch ng/Makefile /apps/easybuild/easyconfigs-it4i/n/Netgen/ng.patch && '
+
+sanity_check_paths = {
+    'files': [],
+    'dirs': ['bin'],
+}
+
+moduleclass = 'phys'

n/Netgen/Netgen-6.0-beta.eb

@@ -0,0 +1,33 @@
+easyblock = 'ConfigureMake'
+
+name = 'Netgen'
+version = '6.0-beta'
+versionsuffix = '-Python-3.6.1'
+
+homepage = 'https://ngsolve.org/'
+description = """Netgen/NGSolve is a high performance multiphysics finite element software. It is widely used to
+analyze models from solid mechanics, fluid dynamics and electromagnetics. Due to its flexible Python interface
+new physical equations and solution algorithms can be implemented easily."""
+
+toolchain = {'name': 'intel', 'version': '2017a'}
+
+source_urls = ['https://downloads.sourceforge.net/project/netgen-mesher/netgen-mesher/6.0/']
+sources = ['netgen-6.0-beta.tar.gz']
+
+dependencies = [
+    ('Togl', '1.7', '', True),
+    ('Tk', '8.6.5', '', True),
+    ('Tcl','8.6.5', '', True),
+    ('Python', '3.6.1', '', True),
+]
+
+configopts = '--with-tcl=$EBROOTTCL/lib --with-tk=$EBROOTTK/lib --with-togl=$EBROOTTOGL CXX=mpicxx CC=mpicc'
+
+#prebuildopts = 'patch ng/Makefile /apps/easybuild/easyconfigs-it4i/n/Netgen/ng.patch && '
+
+sanity_check_paths = {
+    'files': [],
+    'dirs': ['bin'],
+}
+
+moduleclass = 'phys'

n/Netgen/Netgen-6.3.eb

@@ -1,35 +0,0 @@
-easyblock = 'CMakeMake'
-
-name = 'Netgen'
-version = "6.3"
-
-homepage = 'https://ngsolve.org/'
-description = """Netgen/NGSolve is a high performance multiphysics finite element software. It is widely used to
-analyze models from solid mechanics, fluid dynamics and electromagnetics. Due to its flexible Python interface
-new physical equations and solution algorithms can be implemented easily."""
-
-toolchain = {'name': 'intel', 'version': '2017a'}
-
-source_urls = ['https://github.com/trelau/netgen/archive/']
-sources = ['%(version)s.tar.gz']
-
-builddependencies = [
-    ('CMake', '3.9.0', '', True),
-]
-
-dependencies = [
-#    ('Togl', '1.7', '', True),
-    ('Tk', '8.6.6', '', True),
-    ('Tcl','8.6.6', '', True),
-    ('zlib', '1.2.11', '', True),
-]
-
-#configopts = '--with-tcl=$EBROOTTCL/lib --with-tk=$EBROOTTK/lib --with-togl=$EBROOTTOGL CXX=mpicxx CC=mpicc'
-#configopts = '--with-tcl=$EBROOTTCL/lib --with-tk=$EBROOTTK/lib CXX=mpicxx CC=mpicc'
-
-sanity_check_paths = {
-    'files': [],
-    'dirs': ['bin'],
-}
-
-moduleclass = 'phys'

n/Netgen/ng.patch

@@ -0,0 +1,12 @@
+--- ng/Makefile	2017-10-09 12:16:19.796661408 +0200
++++ ng/Makefile.new	2017-10-09 12:19:02.143719828 +0200
+@@ -312,8 +312,7 @@
+ 	$(top_builddir)/libsrc/csg/libcsg.la \
+ 	$(top_builddir)/libsrc/interface/libinterface.la \
+ 	$(top_builddir)/libsrc/meshing/libmesh.la \
+-	-L$(TK_BIN_DIR)/Togl1.7 $(TOGLLIBDIR) -lTogl $(LIBGLU) $(TK_LIB_SPEC) $(TCL_LIB_SPEC) $(MPI_LIBS) $(FFMPEG_LIBS) $(JPEGLIB_LIBS) $(PKG_LIBS) $(MKL_LIBS) 
+-
++        $(OCCLIBS) -L$(TK_BIN_DIR)/Togl1.7 $(TOGLLIBDIR) -lTogl1.7 $(LIBGLU) $(TK_LIB_SPEC) $(TCL_LIB_SPEC) $(MPI_LIBS) $(FFMPEG_LIBS) $(JPEGLIB_LIBS) $(PKG_LIBS)
+ 
+ #
+ #	$(top_builddir)/libsrc/occ/liboccvis.la 

s/seekpath/seekpath-1.5.0-Python-2.7.13-base.eb

@@ -0,0 +1,31 @@
+easyblock = "PythonPackage"
+
+name = 'seekpath'
+version = '1.5.0'
+
+homepage = 'https://github.com/giovannipizzi/seekpath'
+description = """SeeK-path is a python module to obtain and visualize band paths in the Brillouin zone of crystal structures.
+The definition of k-point labels follows crystallographic convention, as defined and discussed in the HPKOT paper. Moreover,
+the Bravais lattice is detected properly using the spacegroup symmetry. Also the suggested band path provided in the HPKOT
+paper is returned. Systems without time-reversal and inversion-symmetry are also properly taken into account."""
+
+toolchain = {'name': 'dummy', 'version': ''}
+
+source_urls = ['https://pypi.python.org/packages/34/a0/3070823a5801e073cd9b961d8060b5ed6ad07fd255c8a1b10a8073c80e1c/']
+sources = [SOURCELOWER_TAR_GZ]
+
+python = "Python"
+pythonversion = '2.7.13'
+pyshortver = ".".join(pythonversion.split(".")[:-1])
+
+versionsuffix = "-%s-%s-base" % (python, pythonversion)
+
+dependencies = [
+    (python, pythonversion, '-base'),
+    ('numpy', '1.13.0', versionsuffix),
+    ('scipy', '0.19.1', versionsuffix),
+]
+
+sanity_check_commands = [('python', '-c "import seekpath; assert(seekpath.__version__ == \'%(version)s\')"')]
+
+moduleclass = 'vis'

t/Tcl/Tcl-8.6.7-GCC-6.3.0-2.27.eb

@@ -0,0 +1,26 @@
+easyblock = 'ConfigureMake'
+
+name = 'Tcl'
+version = '8.6.7'
+
+homepage = 'http://www.tcl.tk/'
+description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language,
+suitable for a very wide range of uses, including web and desktop applications, networking, administration,
+testing and many more."""
+
+toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'}
+
+source_urls = ["http://prdownloads.sourceforge.net/tcl"]
+sources = ['%(namelower)s%(version)s-src.tar.gz']
+
+dependencies = [
+    ('zlib', '1.2.11', '', True),
+]
+
+configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"'
+
+runtest = 'test'
+
+start_dir = 'unix'
+
+moduleclass = 'lang'

t/Tk/Tk-8.6.6.eb

@@ -16,7 +16,7 @@ patches = ['Tk-8.6.4_different-prefix-with-tcl.patch']
 
 dependencies = [
     ('Tcl', version),
-    ('zlib', '1.2.8'),
+    ('zlib', '1.2.11'),
 ]
 
 configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib --without-x CFLAGS="-I$EBROOTTCL/include"'

t/Tk/Tk-8.6.7-GCC-6.3.0-2.27.eb

@@ -0,0 +1,26 @@
+easyblock = 'ConfigureMake'
+
+name = 'Tk'
+version = '8.6.7'
+
+homepage = 'http://www.tcl.tk/'
+description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building
+ a graphical user interface (GUI) in many different programming languages."""
+
+toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'}
+
+source_urls = ["http://prdownloads.sourceforge.net/tcl"]
+sources = ['%(namelower)s%(version)s-src.tar.gz']
+
+patches = ['Tk-8.6.4_different-prefix-with-tcl.patch']
+
+dependencies = [
+    ('Tcl', version),
+    ('zlib', '1.2.11', '', True),
+]
+
+configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib --without-x CFLAGS="-I$EBROOTTCL/include"'
+
+start_dir = 'unix'
+
+moduleclass = 'vis'