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new file: h/hwloc/hwloc-2.0.4-GCC-6.3.0-2.27.eb
new file: l/libpciaccess/libpciaccess-0.14-GCC-6.3.0-2.27.eb new file: o/ORCA/ORCA-4.1.1-OpenMPI-2.1.5.eb new file: o/ORCA/ORCA-4.1.2-OpenMPI-2.1.5.eb new file: o/OpenMPI/OpenMPI-2.1.5-GCC-6.3.0-2.27.eb
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h/hwloc/hwloc-2.0.4-GCC-6.3.0-2.27.eb
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h/hwloc/hwloc-2.0.4-GCC-6.3.0-2.27.eb
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#IT4Innovations 2019
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easyblock = 'ConfigureMake'
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name = 'hwloc'
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version = '2.0.4'
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homepage = 'https://www.open-mpi.org/projects/hwloc/'
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description = """
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The Portable Hardware Locality (hwloc) software package provides a portable
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abstraction (across OS, versions, architectures, ...) of the hierarchical
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topology of modern architectures, including NUMA memory nodes, sockets, shared
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caches, cores and simultaneous multithreading. It also gathers various system
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attributes such as cache and memory information as well as the locality of I/O
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devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily
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aims at helping applications with gathering information about modern computing
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hardware so as to exploit it accordingly and efficiently.
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"""
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toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'}
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# need to build with -fno-tree-vectorize to avoid segfaulting lstopo on Intel Skylake
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# cfr. https://github.com/open-mpi/hwloc/issues/315
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toolchainopts = {'vectorize': False}
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source_urls = ['https://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/']
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sources = [SOURCE_TAR_GZ]
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dependencies = [
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('numactl', '2.0.12'),
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('libxml2', '2.9.9', '', True),
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('libpciaccess', '0.14'),
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]
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configopts = "--enable-libnuma=$EBROOTNUMACTL "
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configopts += "--disable-cairo --disable-opencl --disable-cuda --disable-nvml --disable-gl --disable-libudev "
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sanity_check_paths = {
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'files': ['bin/lstopo', 'include/hwloc/linux.h',
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'lib/libhwloc.%s' % SHLIB_EXT],
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'dirs': ['share/man/man3'],
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}
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sanity_check_commands = ['lstopo']
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moduleclass = 'system'
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27
l/libpciaccess/libpciaccess-0.14-GCC-6.3.0-2.27.eb
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l/libpciaccess/libpciaccess-0.14-GCC-6.3.0-2.27.eb
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# IT4Innvoations 2019
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easyblock = 'ConfigureMake'
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name = 'libpciaccess'
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version = '0.14'
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homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/'
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description = """Generic PCI access library."""
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toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'}
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source_urls = ['https://www.x.org/releases/individual/lib/']
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sources = [SOURCE_TAR_GZ]
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checksums = ['8d86e64893917be3dfb1c5e837888d1275399c818783474002203d751312b03c']
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builddependencies = [
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('Autotools', '20180311', '', True),
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('xorg-macros', '1.19.1', '', True),
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]
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sanity_check_paths = {
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'files': ['include/pciaccess.h', 'lib/libpciaccess.a'],
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'dirs': ['lib/pkgconfig'],
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}
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moduleclass = 'system'
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36
o/ORCA/ORCA-4.1.1-OpenMPI-2.1.5.eb
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o/ORCA/ORCA-4.1.1-OpenMPI-2.1.5.eb
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# IT4Innovations 2019
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easyblock = "PackedBinary"
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name = "ORCA"
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version = '4.1.1'
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versionsuffix = '-OpenMPI-2.1.5'
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homepage = 'http://cec.mpg.de/forum/'
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description = """ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry
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with specific emphasis on spectroscopic properties of open-shell molecules.
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It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single-
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and multireference correlated ab initio methods.
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It can also treat environmental and relativistic effects."""
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toolchain = {'name': 'dummy', 'version': ''}
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# Download from https://orcaforum.kofo.mpg.de
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sources = ['orca_4_1_1_linux_x86-64_openmpi215.tar.xz']
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checksums = ['30dcbf83adbb766b512fa22e800122ae']
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dependencies = [('OpenMPI', '2.1.5', '-GCC-6.3.0-2.27')]
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sanity_check_paths = {
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'files': ['orca_%s%s' % (x, y) for x in ['anoint', 'casscf', 'cis', 'cpscf',
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'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc',
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'rocis', 'scf', 'scfgrad', 'soc'] for y in ['', '_mpi']] +
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['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib',
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'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc',
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'md', 'mergefrag', 'ndoint', 'numfreq', 'plot',
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'pltvib', 'pop', 'rel', 'vib', 'vpot']] +
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['orca'],
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'dirs': [],
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}
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moduleclass = 'chem'
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o/ORCA/ORCA-4.1.2-OpenMPI-2.1.5.eb
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o/ORCA/ORCA-4.1.2-OpenMPI-2.1.5.eb
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# IT4Innovations 2019
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easyblock = "PackedBinary"
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name = "ORCA"
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version = '4.1.2'
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versionsuffix = '-OpenMPI-2.1.5'
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homepage = 'http://cec.mpg.de/forum/'
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description = """ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry
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with specific emphasis on spectroscopic properties of open-shell molecules.
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It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single-
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and multireference correlated ab initio methods.
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It can also treat environmental and relativistic effects."""
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toolchain = {'name': 'dummy', 'version': ''}
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# Download from https://orcaforum.kofo.mpg.de
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sources = ['orca_4_1_2_linux_x86-64_openmpi215.tar.xz']
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checksums = ['30dcbf83adbb766b512fa22e800122ae']
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dependencies = [('OpenMPI', '2.1.5', '-GCC-6.3.0-2.27')]
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sanity_check_paths = {
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'files': ['orca_%s%s' % (x, y) for x in ['anoint', 'casscf', 'cis', 'cpscf',
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'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc',
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'rocis', 'scf', 'scfgrad', 'soc'] for y in ['', '_mpi']] +
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['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib',
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'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc',
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'md', 'mergefrag', 'ndoint', 'numfreq', 'plot',
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'pltvib', 'pop', 'rel', 'vib', 'vpot']] +
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['orca'],
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'dirs': [],
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}
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moduleclass = 'chem'
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o/OpenMPI/OpenMPI-2.1.5-GCC-6.3.0-2.27.eb
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o/OpenMPI/OpenMPI-2.1.5-GCC-6.3.0-2.27.eb
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# IT4Innovations 2019
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easyblock = 'ConfigureMake'
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name = 'OpenMPI'
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version = '2.1.5'
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homepage = 'http://www.open-mpi.org/'
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description = """The Open MPI Project is an open source MPI-3.1 implementation."""
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toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'}
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source_urls = [
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'http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads']
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sources = [SOURCELOWER_TAR_GZ]
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dependencies = [
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('hwloc', '1.11.7')
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]
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# for PBS Pro 13
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preconfigopts = 'export LIBS="-ldl" && '
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configopts = '--enable-shared --enable-mpi-thread-multiple --with-verbs '
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# suppress failure modes in relation to mpirun path
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configopts += '--enable-mpirun-prefix-by-default '
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configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support
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# configopts += '--disable-dlopen ' # dont disable dlopen!
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# https://github.com/open-mpi/ompi/issues/3630
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configopts += '--with-tm=/opt/pbs/default ' # Enable PBS
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#configopts += '--enable-mpi-java ' # Java support RT#4090
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configopts += '--enable-mpi-cxx ' # Enable building the C++ MPI bindings
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# needed for --with-verbs
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osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')]
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libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"]
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sanity_check_paths = {
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'files': [
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"bin/%s" %
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binfile for binfile in [
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"ompi_info", "opal_wrapper", "orterun"]] + [
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"lib/lib%s.%s" %
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(libfile, SHLIB_EXT) for libfile in libs] + [
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"include/%s.h" %
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x for x in [
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"mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], 'dirs': [], }
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modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx4_0',
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'OMPI_MCA_oob_tcp_if_include': '10.0.0.0/8',
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}
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moduleclass = 'mpi'
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