new file: g/GROMACS/GROMACS-2020.3-foss-2021a-PLUMED-2.7.2.eb

new file:   o/OpenMolcas/OpenMolcas-22.06-increase_MxShll.patch
	new file:   o/OpenMolcas/OpenMolcas-22.06-intel-2022a.eb
	deleted:    g/GROMACS/GROMACS-2020.3-foss-2020b-PLUMED-2.7.3.eb
This commit is contained in:
Jakub Kropacek 2023-01-03 09:56:49 +01:00 committed by easybuild
parent f6e2315a40
commit 863f26e6c1
3 changed files with 94 additions and 24 deletions

View File

@ -11,10 +11,10 @@ description = """
GROMACS is a versatile package to perform molecular dynamics,
i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
This is a GPU enabled build, containing both MPI and threadMPI binaries.
This is a CPU-only build, containing both MPI and threadMPI binaries.
"""
toolchain = {'name': 'foss', 'version': '2020b'}
toolchain = {'name': 'foss', 'version': '2021a'}
toolchainopts = {'openmp': True, 'usempi': True}
source_urls = [
@ -25,7 +25,9 @@ sources = [SOURCELOWER_TAR_GZ]
patches = [
'GROMACS-2019_fix_omp_num_threads_and_google_test_death_style_in_tests.patch',
'GROMACS-2019_increase_test_timeout_for_GPU.patch',
'GROMACS-2020_add-missing-sync.patch',
# 'GROMACS-2021_fix_gmxapi_gmx_allowed_cmd_name.patch',
'GROMACS-2020.5_fix_threads_gpu_Gmxapitests.patch',
# 'GROMACS-2021.3_skip_test_for_plumed.patch',
]
checksums = [
{'gromacs-2020.3.tar.gz': '903183691132db14e55b011305db4b6f4901cc4912d2c56c131edfef18cc92a9'},
@ -33,40 +35,41 @@ checksums = [
'406f5edd204be812f095a6f07ebc2673c5f6ddf1b1c1428fd336a80b9c629275'},
{'GROMACS-2019_increase_test_timeout_for_GPU.patch':
'0d16f53d428155197a0ed0b0974ce03422f199d7c463c4a9156a3b99e3c86234'},
{'GROMACS-2020_add-missing-sync.patch': '3c9d7017422a722a960d26ad955d7a0f72a1305a6234bcb53851cc62662b96c9'},
{'GROMACS-2020.5_fix_threads_gpu_Gmxapitests.patch':
'89fbb7e2754de45573632c74f53563bb979df9758c949238a35865391d6b53fb'},
]
builddependencies = [
('CMake', '3.18.4'),
('Ninja', '1.10.1'),
('CMake', '3.20.1'),
('scikit-build', '0.11.1'),
]
dependencies = [
('Python', '3.8.6'),
('SciPy-bundle', '2020.11'),
('networkx', '2.5'),
('Python', '3.9.5'),
('SciPy-bundle', '2021.05'),
('networkx', '2.5.1'),
('PLUMED', local_plum_ver),
]
ignore_plumed_version_check = True
configopts = '-DGMX_GPU_NB_CLUSTER_SIZE=4 '
exts_defaultclass = 'PythonPackage'
exts_default_options = {
'source_urls': [PYPI_SOURCE],
'use_pip': True,
'download_dep_fail': True,
'sanity_pip_check': True,
}
exts_list = [
('gmxapi', '0.2.0', {
'preinstallopts': "export GMXTOOLCHAINDIR=%(installdir)s/share/cmake/gromacs_mpi && ",
'checksums': ['3954bf123da12fc60bcfaeed8263f5e2d3e16e5136c2bb5c8207b20fa7406788'],
}),
]
#exts_defaultclass = 'PythonPackage'
#
#exts_default_options = {
# 'source_urls': [PYPI_SOURCE],
# 'use_pip': True,
# 'download_dep_fail': True,
# 'sanity_pip_check': True,
#}
#
#exts_list = [
# ('gmxapi', '0.2.0', {
# 'preinstallopts': "export GMXTOOLCHAINDIR=%(installdir)s/share/cmake/gromacs_mpi && ",
# 'checksums': ['3954bf123da12fc60bcfaeed8263f5e2d3e16e5136c2bb5c8207b20fa7406788'],
# }),
#]
modextrapaths = {
'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages',

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@ -0,0 +1,12 @@
diff -ruN OpenMolcas-v22.06.orig/src/Include/Molcas.fh OpenMolcas-v22.06/src/Include/Molcas.fh
--- OpenMolcas-v22.06.orig/src/Include/Molcas.fh 2023-01-03 08:39:47.368839000 +0100
+++ OpenMolcas-v22.06/src/Include/Molcas.fh 2023-01-03 08:41:44.103750000 +0100
@@ -14,7 +14,7 @@
Integer, Parameter :: mxroot = 600
Integer, Parameter :: mxNemoAtom = 200
Integer, Parameter :: Mxdbsc=1000
- Integer, Parameter :: MxShll=1000
+ Integer, Parameter :: MxShll=2000
#else
Integer, Parameter :: mxAtom = 6
Integer, Parameter :: mxroot = 2

View File

@ -0,0 +1,55 @@
# IT4Innovations 2022
# JK
easyblock = 'CMakeMake'
name = 'OpenMolcas'
version = '22.06'
homepage = "https://gitlab.com/Molcas/OpenMolcas"
description = "OpenMolcas is a quantum chemistry software package"
toolchain = {'name': 'intel', 'version': '2022a'}
toolchainopts = {'usempi': True}
source_urls = ['https://gitlab.com/Molcas/OpenMolcas/-/archive/v%(version)s/']
sources = ["OpenMolcas-v%(version)s.tar.gz"]
patches = [
'OpenMolcas-21.06_mcpdft_deps.patch',
'OpenMolcas-22.06-increase_MxShll.patch',
]
checksums = [
{'OpenMolcas-v22.06.tar.gz': '45daca1e6465d59a43479d5509315bca9c19dedbb0a2d4bb4f26f0b443b7670d'},
{'OpenMolcas-21.06_mcpdft_deps.patch': '708763e060aa0174bbe9c0cc336b509fbf492066465908dd919452836a7a793a'},
{'OpenMolcas-22.06-increase_MxShll.patch': 'e2588bca3d60f0681f6569aedb287166cead3934f02bc41f8daa9ede8dad98e8'},
]
builddependencies = [('CMake', '3.23.1')]
dependencies = [
('GlobalArrays', '5.8.1'),
('HDF5', '1.12.2'),
('Python', '3.10.4'),
]
build_shared_libs = True
preconfigopts = 'GAROOT=$EBROOTGLOBALARRAYS'
configopts = '-DLINALG=MKL -DMKLROOT=$MKLROOT '
configopts += '-DMPI=ON -DOPENMP=ON -DGA=ON '
configopts += '-DTOOLS=ON -DFDE=ON'
modextrapaths = {'PATH': ''}
modextravars = {
'MOLCAS': '%(installdir)s',
'MOLCAS_DRIVER': '%(installdir)s/pymolcas',
'MOLCAS_SOURCE': '%(installdir)s',
}
sanity_check_paths = {
'files': ['bin/dynamix.exe', 'bin/mpprop.exe', 'lib/libmolcas.%s' % SHLIB_EXT,
'sbin/help_basis', 'pymolcas'],
'dirs': ['data/', 'basis_library/'],
}
moduleclass = 'chem'