mirror of
https://code.it4i.cz/sccs/easyconfigs-it4i.git
synced 2025-04-07 15:32:11 +01:00
new file: g/GROMACS/GROMACS-2020.3-foss-2021a-PLUMED-2.7.2.eb
new file: o/OpenMolcas/OpenMolcas-22.06-increase_MxShll.patch new file: o/OpenMolcas/OpenMolcas-22.06-intel-2022a.eb deleted: g/GROMACS/GROMACS-2020.3-foss-2020b-PLUMED-2.7.3.eb
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@ -11,10 +11,10 @@ description = """
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GROMACS is a versatile package to perform molecular dynamics,
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i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
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This is a GPU enabled build, containing both MPI and threadMPI binaries.
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This is a CPU-only build, containing both MPI and threadMPI binaries.
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"""
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toolchain = {'name': 'foss', 'version': '2020b'}
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toolchain = {'name': 'foss', 'version': '2021a'}
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toolchainopts = {'openmp': True, 'usempi': True}
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source_urls = [
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@ -25,7 +25,9 @@ sources = [SOURCELOWER_TAR_GZ]
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patches = [
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'GROMACS-2019_fix_omp_num_threads_and_google_test_death_style_in_tests.patch',
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'GROMACS-2019_increase_test_timeout_for_GPU.patch',
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'GROMACS-2020_add-missing-sync.patch',
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# 'GROMACS-2021_fix_gmxapi_gmx_allowed_cmd_name.patch',
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'GROMACS-2020.5_fix_threads_gpu_Gmxapitests.patch',
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# 'GROMACS-2021.3_skip_test_for_plumed.patch',
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]
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checksums = [
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{'gromacs-2020.3.tar.gz': '903183691132db14e55b011305db4b6f4901cc4912d2c56c131edfef18cc92a9'},
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@ -33,40 +35,41 @@ checksums = [
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'406f5edd204be812f095a6f07ebc2673c5f6ddf1b1c1428fd336a80b9c629275'},
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{'GROMACS-2019_increase_test_timeout_for_GPU.patch':
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'0d16f53d428155197a0ed0b0974ce03422f199d7c463c4a9156a3b99e3c86234'},
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{'GROMACS-2020_add-missing-sync.patch': '3c9d7017422a722a960d26ad955d7a0f72a1305a6234bcb53851cc62662b96c9'},
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{'GROMACS-2020.5_fix_threads_gpu_Gmxapitests.patch':
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'89fbb7e2754de45573632c74f53563bb979df9758c949238a35865391d6b53fb'},
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]
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builddependencies = [
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('CMake', '3.18.4'),
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('Ninja', '1.10.1'),
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('CMake', '3.20.1'),
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('scikit-build', '0.11.1'),
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]
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dependencies = [
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('Python', '3.8.6'),
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('SciPy-bundle', '2020.11'),
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('networkx', '2.5'),
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('Python', '3.9.5'),
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('SciPy-bundle', '2021.05'),
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('networkx', '2.5.1'),
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('PLUMED', local_plum_ver),
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]
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ignore_plumed_version_check = True
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configopts = '-DGMX_GPU_NB_CLUSTER_SIZE=4 '
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exts_defaultclass = 'PythonPackage'
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exts_default_options = {
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'source_urls': [PYPI_SOURCE],
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'use_pip': True,
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'download_dep_fail': True,
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'sanity_pip_check': True,
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}
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exts_list = [
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('gmxapi', '0.2.0', {
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'preinstallopts': "export GMXTOOLCHAINDIR=%(installdir)s/share/cmake/gromacs_mpi && ",
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'checksums': ['3954bf123da12fc60bcfaeed8263f5e2d3e16e5136c2bb5c8207b20fa7406788'],
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}),
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]
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#exts_defaultclass = 'PythonPackage'
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#
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#exts_default_options = {
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# 'source_urls': [PYPI_SOURCE],
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# 'use_pip': True,
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# 'download_dep_fail': True,
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# 'sanity_pip_check': True,
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#}
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#
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#exts_list = [
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# ('gmxapi', '0.2.0', {
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# 'preinstallopts': "export GMXTOOLCHAINDIR=%(installdir)s/share/cmake/gromacs_mpi && ",
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# 'checksums': ['3954bf123da12fc60bcfaeed8263f5e2d3e16e5136c2bb5c8207b20fa7406788'],
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# }),
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#]
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modextrapaths = {
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'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages',
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12
o/OpenMolcas/OpenMolcas-22.06-increase_MxShll.patch
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12
o/OpenMolcas/OpenMolcas-22.06-increase_MxShll.patch
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@ -0,0 +1,12 @@
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diff -ruN OpenMolcas-v22.06.orig/src/Include/Molcas.fh OpenMolcas-v22.06/src/Include/Molcas.fh
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--- OpenMolcas-v22.06.orig/src/Include/Molcas.fh 2023-01-03 08:39:47.368839000 +0100
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+++ OpenMolcas-v22.06/src/Include/Molcas.fh 2023-01-03 08:41:44.103750000 +0100
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@@ -14,7 +14,7 @@
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Integer, Parameter :: mxroot = 600
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Integer, Parameter :: mxNemoAtom = 200
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Integer, Parameter :: Mxdbsc=1000
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- Integer, Parameter :: MxShll=1000
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+ Integer, Parameter :: MxShll=2000
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#else
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Integer, Parameter :: mxAtom = 6
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Integer, Parameter :: mxroot = 2
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o/OpenMolcas/OpenMolcas-22.06-intel-2022a.eb
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55
o/OpenMolcas/OpenMolcas-22.06-intel-2022a.eb
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@ -0,0 +1,55 @@
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# IT4Innovations 2022
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# JK
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easyblock = 'CMakeMake'
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name = 'OpenMolcas'
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version = '22.06'
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homepage = "https://gitlab.com/Molcas/OpenMolcas"
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description = "OpenMolcas is a quantum chemistry software package"
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toolchain = {'name': 'intel', 'version': '2022a'}
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toolchainopts = {'usempi': True}
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source_urls = ['https://gitlab.com/Molcas/OpenMolcas/-/archive/v%(version)s/']
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sources = ["OpenMolcas-v%(version)s.tar.gz"]
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patches = [
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'OpenMolcas-21.06_mcpdft_deps.patch',
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'OpenMolcas-22.06-increase_MxShll.patch',
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]
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checksums = [
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{'OpenMolcas-v22.06.tar.gz': '45daca1e6465d59a43479d5509315bca9c19dedbb0a2d4bb4f26f0b443b7670d'},
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{'OpenMolcas-21.06_mcpdft_deps.patch': '708763e060aa0174bbe9c0cc336b509fbf492066465908dd919452836a7a793a'},
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{'OpenMolcas-22.06-increase_MxShll.patch': 'e2588bca3d60f0681f6569aedb287166cead3934f02bc41f8daa9ede8dad98e8'},
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]
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builddependencies = [('CMake', '3.23.1')]
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dependencies = [
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('GlobalArrays', '5.8.1'),
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('HDF5', '1.12.2'),
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('Python', '3.10.4'),
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]
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build_shared_libs = True
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preconfigopts = 'GAROOT=$EBROOTGLOBALARRAYS'
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configopts = '-DLINALG=MKL -DMKLROOT=$MKLROOT '
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configopts += '-DMPI=ON -DOPENMP=ON -DGA=ON '
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configopts += '-DTOOLS=ON -DFDE=ON'
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modextrapaths = {'PATH': ''}
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modextravars = {
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'MOLCAS': '%(installdir)s',
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'MOLCAS_DRIVER': '%(installdir)s/pymolcas',
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'MOLCAS_SOURCE': '%(installdir)s',
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}
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sanity_check_paths = {
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'files': ['bin/dynamix.exe', 'bin/mpprop.exe', 'lib/libmolcas.%s' % SHLIB_EXT,
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'sbin/help_basis', 'pymolcas'],
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'dirs': ['data/', 'basis_library/'],
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}
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moduleclass = 'chem'
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