new file: g/GROMACS/GROMACS-2022-foss-2020a-constantph.eb

new file:   j/Julia/Julia-1.8.5-linux-x86_64.eb
	new file:   n/NVSHMEM/NVSHMEM-2.8.0-gompi-2022a-CUDA-11.7.0-IBGDA.eb
	deleted:    g/GROMACS/GROMACS-2022-foss-2022a-constantph.eb
This commit is contained in:
Lukas Krupcik 2023-04-12 09:23:26 +02:00
parent 4e4aa4a239
commit 7fe7629124
3 changed files with 123 additions and 7 deletions

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@ -1,6 +1,7 @@
# IT4Innovations 2023
# JK
# JK, LK
# pokus o na prase instalaci devel verze, ktera by v budoucnu mela byt mergnuta do GROMACSu
# GCC <= 9
name = 'GROMACS'
version = '2022'
@ -19,7 +20,7 @@ for both single and double precision.
It also contains the gmxapi extension for the single precision MPI build.
"""
toolchain = {'name': 'foss', 'version': '2022a'}
toolchain = {'name': 'foss', 'version': '2020a'}
toolchainopts = {'openmp': True, 'usempi': True}
source_urls = ['https://gitlab.com/gromacs-constantph/constantph/-/archive/main/']
@ -45,14 +46,14 @@ checksums = [
]
builddependencies = [
('CMake', '3.23.1'),
('scikit-build', '0.15.0'),
('CMake', '3.16.4'),
('scikit-build', '0.10.0', '-Python-3.8.2'),
]
dependencies = [
('Python', '3.10.4'),
('SciPy-bundle', '2022.05'),
('networkx', '2.8.4'),
('Python', '3.8.2'),
('SciPy-bundle', '2020.03', '-Python-3.8.2'),
('networkx', '2.4', '-Python-3.8.2'),
]
exts_defaultclass = 'PythonPackage'

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@ -0,0 +1,41 @@
# IT4Innovations
# 2023 LK
easyblock = 'Tarball'
name = 'Julia'
version = '1.8.5'
versionsuffix = '-linux-x86_64'
homepage = 'https://julialang.org'
description = "Julia is a high-level, high-performance dynamic programming language for numerical computing"
toolchain = SYSTEM
source_urls = ['https://julialang-s3.julialang.org/bin/linux/x64/%(version_major_minor)s/']
sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz']
checksums = ['e71a24816e8fe9d5f4807664cbbb42738f5aa9fe05397d35c81d4c5d649b9d05']
sanity_check_paths = {
'files': ['bin/julia', 'include/julia/julia.h', 'lib/libjulia.%s' % SHLIB_EXT],
'dirs': ['bin', 'etc', 'include', 'lib', 'share']
}
sanity_check_commands = ['julia --help']
_depot_paths = ':'.join([
# default shared directory in install dir
#'%(installdir)s/share/julia',
# allow users to add their own packages to Julia
'~/.julia',
])
modextravars = {
'JULIA_DEPOT_PATH': _depot_paths,
# 'set JULIA_HISTORY to user's DEPOT_PATH (~/.julia)
# by default it will point to the DEPOT_PATH (install dir) of the last module loaded
# https://docs.julialang.org/en/v1/manual/environment-variables/#JULIA_HISTORY
'JULIA_HISTORY': '~/.julia/logs/repl_history.jl',
}
moduleclass = 'lang'

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@ -0,0 +1,74 @@
# IT4Innovations
# LK 2023
easyblock = 'ConfigureMake'
name = 'NVSHMEM'
version = '2.9.0'
versionsuffix = '-CUDA-%(cudaver)s-IBGDA'
homepage = 'https://developer.nvidia.com/nvshmem'
description = """NVSHMEM is a parallel programming interface based on OpenSHMEM that provides
efficient and scalable communication for NVIDIA GPU clusters. NVSHMEM creates a
global address space for data that spans the memory of multiple GPUs and can be
accessed with fine-grained GPU-initiated operations, CPU-initiated operations,
and operations on CUDA streams.
"""
toolchain = {'name': 'gompi', 'version': '2022a'}
download_instructions = """The sources of NVSHMEM can be downloaded at NVIDIA's webpage when you have signed up for
their (free) developer program:
https://developer.nvidia.com/nvshmem-downloads"""
sources = ['%(namelower)s_src_%(version)s-2.tar.xz']
checksums = ['c0e0d1a5b13f3e2f12fd79b44645dde5370e2baf7392082aee7aa0a0063d75a6']
builddependencies = [
('Autotools', '20220317'),
('pkgconf', '1.8.0'),
]
dependencies = [
('CUDA', '11.7.0', '', SYSTEM),
('UCX-CUDA', '1.12.1', '-CUDA-%(cudaver)s'),
('NCCL', '2.12.12', '-CUDA-%(cudaver)s'),
]
skipsteps = ['configure']
prebuildopts = 'export %s &&' % ' '.join([
'NVSHMEM_USE_GDRCOPY=1',
'NVSHMEM_IBGDA_SUPPORT=1 ',
'GDRCOPY_HOME=${EBROOTGDRCOPY}',
'MPI_HOME=${EBROOTOPENMPI}',
'NVSHMEM_MPI_SUPPORT=1',
'NVSHMEMTEST_USE_MPI_LAUNCHER=1',
'NCCL_HOME=${EBROOTNCCL}',
'NVSHMEM_USE_NCCL=1',
'NVSHMEM_BUILDDIR=%(builddir)s',
'NVSHMEM_EXAMPLES_BUILDDIR=${NVSHMEM_BUILDDIR}/examples/obj',
'NVSHMEM_OTHERTEST_BUILDDIR=${NVSHMEM_BUILDDIR}/othertest/obj',
'NVSHMEM_TEST_BUILDDIR=${NVSHMEM_BUILDDIR}/test/obj',
'NVSHMEM_PERFTEST_BUILDDIR=${NVSHMEM_BUILDDIR}/perftest/obj',
'NVSHMEM_PREFIX=%(installdir)s',
'NVSHMEM_EXAMPLES_INSTALL=${NVSHMEM_PREFIX}/examples',
'NVSHMEM_OTHERTEST_INSTALL=${NVSHMEM_PREFIX}/othertest',
'NVSHMEM_PERFTEST_INSTALL=${NVSHMEM_PREFIX}/perftest',
'NVSHMEM_TEST_INSTALL=${NVSHMEM_PREFIX}/test',
])
preinstallopts = prebuildopts
sanity_check_paths = {
'files': ['lib/libnvshmem.a', 'lib/nvshmem_bootstrap_mpi.%s' % SHLIB_EXT],
'dirs': ['include']
}
modextravars = {'NVSHMEM_HOME': '%(installdir)s'}
moduleclass = 'devel'