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fix
This commit is contained in:
Easy Build
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53
o/OpenMPI/OpenMPI-2.1.5-GCC-6.3.0-2.27-noPBS.eb
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53
o/OpenMPI/OpenMPI-2.1.5-GCC-6.3.0-2.27-noPBS.eb
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# IT4Innovations 2019
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easyblock = 'ConfigureMake'
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name = 'OpenMPI'
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version = '2.1.5'
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homepage = 'http://www.open-mpi.org/'
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description = """The Open MPI Project is an open source MPI-3.1 implementation."""
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toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'}
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source_urls = [
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'http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads']
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sources = [SOURCELOWER_TAR_GZ]
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dependencies = [
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('hwloc', '1.11.7')
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]
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# for PBS Pro 13
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preconfigopts = 'export LIBS="-ldl" && '
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configopts = '--enable-shared --enable-mpi-thread-multiple --with-verbs '
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# suppress failure modes in relation to mpirun path
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configopts += '--enable-mpirun-prefix-by-default '
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configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support
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# configopts += '--disable-dlopen ' # dont disable dlopen!
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# https://github.com/open-mpi/ompi/issues/3630
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#configopts += '--with-tm=/opt/pbs/default ' # Enable PBS
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#configopts += '--enable-mpi-java ' # Java support RT#4090
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configopts += '--enable-mpi-cxx ' # Enable building the C++ MPI bindings
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# needed for --with-verbs
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osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')]
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libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"]
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sanity_check_paths = {
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'files': [
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"bin/%s" %
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binfile for binfile in [
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"ompi_info", "opal_wrapper", "orterun"]] + [
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"lib/lib%s.%s" %
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(libfile, SHLIB_EXT) for libfile in libs] + [
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"include/%s.h" %
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x for x in [
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"mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], 'dirs': [], }
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modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx4_0',
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'OMPI_MCA_oob_tcp_if_include': '10.0.0.0/8',
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}
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moduleclass = 'mpi'
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57
o/OpenMPI/OpenMPI-3.1.4-GCC-6.3.0-2.27-noPBS.eb
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57
o/OpenMPI/OpenMPI-3.1.4-GCC-6.3.0-2.27-noPBS.eb
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# IT4Innovations 2019
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easyblock = 'ConfigureMake'
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name = 'OpenMPI'
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version = '3.1.4'
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homepage = 'http://www.open-mpi.org/'
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description = """The Open MPI Project is an open source MPI-2 implementation."""
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toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'}
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source_urls = [
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'http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads']
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sources = [SOURCELOWER_TAR_GZ]
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dependencies = [
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('hwloc', '1.11.7'),
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('zlib', '1.2.11', '', True),
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('libxml2', '2.9.4', '', True),
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]
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configopts = '--enable-shared --enable-mpi-thread-multiple --with-verbs '
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# suppress failure modes in relation to mpirun path
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configopts += '--enable-mpirun-prefix-by-default '
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configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support
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# configopts += '--disable-dlopen ' # dont disable dlopen!
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# https://github.com/open-mpi/ompi/issues/3630
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#configopts += '--with-tm=/opt/pbs/default ' # Enable PBS
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configopts += '--enable-mpi-cxx ' # Enable building the C++ MPI bindings
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# for PBS Pro 13
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preconfigopts = 'export LIBS="-ldl" && '
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# to enable SLURM integration (site-specific)
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# configopts += '--with-slurm --with-pmi=/usr/include/slurm --with-pmi-libdir=/usr'
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# needed for --with-verbs
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osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')]
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libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"]
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sanity_check_paths = {
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'files': [
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"bin/%s" %
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binfile for binfile in [
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"ompi_info", "opal_wrapper", "orterun"]] + [
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"lib/lib%s.%s" %
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(libfile, SHLIB_EXT) for libfile in libs] + [
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"include/%s.h" %
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x for x in [
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"mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], 'dirs': [], }
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modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx4_0',
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'OMPI_MCA_oob_tcp_if_include': '10.0.0.0/8',
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}
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moduleclass = 'mpi'
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66
o/OpenMPI/OpenMPI-4.0.0-GCC-6.3.0-2.27-noPBS.eb
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66
o/OpenMPI/OpenMPI-4.0.0-GCC-6.3.0-2.27-noPBS.eb
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# IT4Innovations 2019
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easyblock = 'ConfigureMake'
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name = 'OpenMPI'
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version = '4.0.0'
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homepage = 'http://www.open-mpi.org/'
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description = """The Open MPI Project is an open source MPI-2 implementation."""
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toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'}
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source_urls = ['https://github.com/open-mpi/ompi/archive/']
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sources = ['v4.0.0.tar.gz']
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#builddependencies = [
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# ('Java', '1.8.0_144', '', True)
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#]
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dependencies = [
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('hwloc', '2.0.3'),
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('zlib', '1.2.11', '', True),
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]
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# for PBS Pro 13
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preconfigopts = 'export LIBS="-ldl" && '
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preconfigopts += './autogen.pl && '
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configopts = '--enable-shared --enable-mpi-thread-multiple --with-verbs '
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# suppress failure modes in relation to mpirun path
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configopts += '--enable-mpirun-prefix-by-default '
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configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support
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# configopts += '--disable-dlopen ' # dont disable dlopen!
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# https://github.com/open-mpi/ompi/issues/3630
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#configopts += '--with-tm=/opt/pbs/default ' # Enable PBS
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#configopts += '--enable-mpi-java ' # Java support RT#4090
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configopts += '--enable-mpi-cxx ' # Enable building the C++ MPI bindings
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# to enable SLURM integration (site-specific)
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# configopts += '--with-slurm --with-pmi=/usr/include/slurm --with-pmi-libdir=/usr'
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# needed for --with-verbs
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osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')]
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postinstallcmds = [
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'echo "# By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default." >> %(installdir)s/etc/openmpi-mca-params.conf',
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'echo "btl_openib_allow_ib = true" >> %(installdir)s/etc/openmpi-mca-params.conf',
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]
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libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"]
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sanity_check_paths = {
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'files': [
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"bin/%s" %
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binfile for binfile in [
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"ompi_info", "opal_wrapper", "orterun"]] + [
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"lib/lib%s.%s" %
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(libfile, SHLIB_EXT) for libfile in libs] + [
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"include/%s.h" %
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x for x in [
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"mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], 'dirs': [], }
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modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx4_0',
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'OMPI_MCA_oob_tcp_if_include': '10.0.0.0/8',
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}
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moduleclass = 'mpi'
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57
s/Singularity/Singularity-3.3.0.eb
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57
s/Singularity/Singularity-3.3.0.eb
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@ -0,0 +1,57 @@
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# IT4Innovations 2019
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easyblock = 'ConfigureMake'
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name = 'Singularity'
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version = '3.3.0'
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homepage = 'https://github.com/sylabs/singularity'
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description = "Singularity is an open source container platform designed to be simple, fast, and secure. Singularity is optimized for EPC and HPC workloads, allowing untrusted users to run untrusted containers in a trusted way."
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toolchain = {'name': 'dummy', 'version': ''}
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source_urls = ['https://github.com/sylabs/singularity/releases/download/v%s/' % version]
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sources = ['singularity-%(version)s.tar.gz']
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checksums = ['070530a472e7e78492f1f142c8d4b77c64de4626c4973b0589f0d18e1fcf5b4f']
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builddependencies = [
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('Go', '1.12.7'),
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]
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dependencies = [
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('squashfs-tools', '4.3'),
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]
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osdependencies = [
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('openssl-devel', 'libssl-dev', 'libopenssl-devel'),
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]
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skipsteps = ['configure']
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#prebuildopts = 'export GOPATH=$(pwd):$GOPATH && '
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skipsteps = ['configure']
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prebuildopts = 'mkdir -p src/github.com/sylabs && '
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prebuildopts += 'ln -sf %(builddir)s/singularity src/github.com/sylabs/singularity && '
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prebuildopts += './mconfig -p %(installdir)s -b build && '
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prebuildopts += 'cd build && '
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preinstallopts = 'cd build && '
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postinstallcmds = [
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'echo "mksquashfs path = /apps/all/squashfs-tools/4.3/bin" >> %(installdir)s/etc/singularity/singularity.conf',
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]
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# next steps after installation
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# INSTALLATION_PATH=your_installation_path
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# chown root:root $INSTALLATION_PATH/Singularity/*/etc/singularity/singularity.conf
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# chown root:root $INSTALLATION_PATH/Singularity/*/etc/singularity/capability.json
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# chown root:root $INSTALLATION_PATH/Singularity/*/etc/singularity/ecl.toml
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# chown root:root $INSTALLATION_PATH/Singularity/*/libexec/singularity/bin/*-suid
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# chmod 4755 $INSTALLATION_PATH/Singularity/*/libexec/singularity/bin/*-suid
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# chmod +s $INSTALLATION_PATH/Singularity/*/libexec/singularity/bin/*-suid
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sanity_check_paths = {
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'files': ['bin/singularity'],
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'dirs': ['bin', 'etc', 'libexec', 'var'],
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}
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moduleclass = 'tools'
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