diff --git a/c/CMake/CMake-3.14.1.eb b/c/CMake/CMake-3.14.1.eb new file mode 100644 index 00000000..a60a78c7 --- /dev/null +++ b/c/CMake/CMake-3.14.1.eb @@ -0,0 +1,30 @@ +# IT4Innovations 2019 + +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.14.1' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = '-- -DCMAKE_USE_OPENSSL=1' + +dependencies = [ + ('ncurses', '6.1'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/g/GSL/GSL-2.5-intel-2017a.eb b/g/GSL/GSL-2.5-intel-2017a.eb new file mode 100644 index 00000000..f1f7311e --- /dev/null +++ b/g/GSL/GSL-2.5-intel-2017a.eb @@ -0,0 +1,26 @@ +# IT4Innovations 2019 + +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '2.5' + +homepage = 'http://www.gnu.org/software/gsl/' + +description = """ + The GNU Scientific Library (GSL) is a numerical library for C and C++ + programmers. The library provides a wide range of mathematical routines + such as random number generators, special functions and least-squares fitting. +""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [ + ('binutils', '2.27', '-GCCcore-6.3.0', True), +] + +moduleclass = 'numlib' diff --git a/i/ICU/ICU-61.1.eb b/i/ICU/ICU-61.1.eb new file mode 100644 index 00000000..09f42987 --- /dev/null +++ b/i/ICU/ICU-61.1.eb @@ -0,0 +1,28 @@ +# IT4Innovations + +easyblock = 'ConfigureMake' + +name = 'ICU' +version = '61.1' + +homepage = 'http://site.icu-project.org/home' +description = """ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization + support for software applications.""" + +toolchain = {'name': 'dummy', 'version': ''} +toolchainopts = {'pic': True} + +source_urls = ['http://download.icu-project.org/files/icu4c/%(version)s'] +sources = ['icu4c-%(version_major)s_%(version_minor)s-src.tgz'] +checksums = ['d007f89ae8a2543a53525c74359b65b36412fa84b3349f1400be6dcf409fafef'] + +builddependencies = [('binutils', '2.31.1')] + +start_dir = 'source' + +sanity_check_paths = { + 'files': ['lib/libicu%s.%s' % (x, SHLIB_EXT) for x in ['data', 'i18n', 'io', 'test', 'tu', 'uc']], + 'dirs': ['bin', 'include/unicode', 'share/icu', 'share/man'], +} + +moduleclass = 'lib' diff --git a/l/libMesh/libMesh-1.3.0-intel-2017a.eb b/l/libMesh/libMesh-1.3.0-intel-2017a.eb new file mode 100644 index 00000000..e8d215ae --- /dev/null +++ b/l/libMesh/libMesh-1.3.0-intel-2017a.eb @@ -0,0 +1,35 @@ +# IT4Innovations 2019 + +easyblock = 'ConfigureMake' + +name = 'libMesh' +version = '1.3.0' + +homepage = 'http://libmesh.github.io/' +description = """The libMesh library provides a framework for the numerical simulation of partial differential equations + using arbitrary unstructured discretizations on serial and parallel platforms. A major goal of the library is to + provide support for adaptive mesh refinement (AMR) computations in parallel while allowing a research scientist + to focus on the physics they are modeling.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [ + 'https://github.com/libMesh/libmesh/releases/download/v%(version)s/', +] + +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-parmetis" + +dependencies = [ + ('ParMETIS', '4.0.3'), + ('Boost', '1.63.0'), +] + +sanity_check_paths = { + 'files': ['bin/meshtool-opt'], + 'dirs': ['bin'], +} + +moduleclass = 'lib' diff --git a/l/libjpeg-turbo/libjpeg-turbo-2.0.0-GCC-6.3.0-2.27.eb b/l/libjpeg-turbo/libjpeg-turbo-2.0.2.eb similarity index 91% rename from l/libjpeg-turbo/libjpeg-turbo-2.0.0-GCC-6.3.0-2.27.eb rename to l/libjpeg-turbo/libjpeg-turbo-2.0.2.eb index 2b0c23c2..bde9511c 100644 --- a/l/libjpeg-turbo/libjpeg-turbo-2.0.0-GCC-6.3.0-2.27.eb +++ b/l/libjpeg-turbo/libjpeg-turbo-2.0.2.eb @@ -3,14 +3,14 @@ easyblock = 'CMakeMake' name = 'libjpeg-turbo' -version = '2.0.0' +version = '2.0.2' homepage = 'http://sourceforge.net/projects/libjpeg-turbo/' description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. """ -toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'} +toolchain = {'name': 'dummy', 'version': ''} toolchainopts = {'pic': True} source_urls = [SOURCEFORGE_SOURCE] @@ -21,7 +21,7 @@ dependencies = [ ] builddependencies = [ - ('CMake', '3.11.4'), + ('CMake', '3.13.1'), ] #configopts = "--with-jpeg8" diff --git a/l/libreadline/libreadline-8.0.eb b/l/libreadline/libreadline-8.0.eb new file mode 100644 index 00000000..49b00524 --- /dev/null +++ b/l/libreadline/libreadline-8.0.eb @@ -0,0 +1,42 @@ +# IT4Innovations 2019 + +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '8.0' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'dummy', 'version': ''} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '6.1')] + +sanity_check_paths = { + 'files': [ + 'lib/libreadline.a', + 'lib/libhistory.a'] + + [ + 'include/readline/%s' % + x for x in [ + 'chardefs.h', + 'history.h', + 'keymaps.h', + 'readline.h', + 'rlconf.h', + 'rlstdc.h', + 'rltypedefs.h', + 'tilde.h']], + 'dirs': [], +} + +buildopts = "CC=gcc CFLAGS='-O3 -fPIC'" + +moduleclass = 'lib' diff --git a/l/libsndfile/libsndfile-1.0.28.eb b/l/libsndfile/libsndfile-1.0.28.eb index 66d06de0..0cfd11ea 100644 --- a/l/libsndfile/libsndfile-1.0.28.eb +++ b/l/libsndfile/libsndfile-1.0.28.eb @@ -13,7 +13,7 @@ source_urls = ['http://www.mega-nerd.com/libsndfile/files/'] sources = [SOURCE_TAR_GZ] checksums = ['1ff33929f042fa333aed1e8923aa628c3ee9e1eb85512686c55092d1e5a9dfa9'] -builddependencies = [('binutils', '2.29')] +builddependencies = [('binutils', '2.31.1')] sanity_check_paths = { 'files': [ diff --git a/o/OpenCV/OpenCV-3.4.6-intel-2017c.eb b/o/OpenCV/OpenCV-3.4.6-intel-2017c.eb new file mode 100644 index 00000000..262e73bf --- /dev/null +++ b/o/OpenCV/OpenCV-3.4.6-intel-2017c.eb @@ -0,0 +1,66 @@ +# IT4Innovations 2019 + +easyblock = 'CMakeMake' + +name = 'OpenCV' +version = '3.4.6' + +homepage = 'http://opencv.org/' +description = """OpenCV (Open Source Computer Vision Library) is an open source computer vision + and machine learning software library. OpenCV was built to provide + a common infrastructure for computer vision applications and to accelerate + the use of machine perception in the commercial products.""" + +toolchain = {'name': 'intel', 'version': '2017c'} + +source_urls = [ + 'https://github.com/Itseez/opencv/archive/' +] +sources = [ + '%(version)s.zip', +] + +builddependencies = [ + ('CMake', '3.14.1', '', True), +] + +dependencies = [ + ('Python', '3.7.3', '', ('GCCcore', '6.3.0')), + ('zlib', '1.2.11', '', True), + ('FFmpeg', '4.1', '', True), + ('pkg-config', '0.29.2', '', True), + ('OpenCL-sdk', '7.0.0.2568', '', True), +] + +separate_build_dir = True + +preconfigopts = 'wget https://github.com/opencv/opencv_contrib/archive/3.4.6.zip && ' +preconfigopts += 'unzip 3.4.6.zip && ' + +configopts = '-DCMAKE_BUILD_TYPE=RELEASE ' +configopts += '-DBUILD_PYTHON_SUPPORT=ON ' +configopts += '-DPYTHON_PACKAGES_PATH=%(installdir)s/lib/python%(pyshortver)s/site-packages ' +configopts += '-DBUILD_NEW_PYTHON_SUPPORT=ON ' +configopts += '-DWITH_CUDA=OFF ' +configopts += '-DOPENCV_ENABLE_NONFREE:BOOL=ON ' +configopts += '-D BUILD_opencv_ts=OFF ' +configopts += '-DPYTHON3_EXECUTABLE=$(which python3.7) ' +configopts += '-DPYTHON_INCLUDE_DIR=$(python3.7 -c "from distutils.sysconfig import get_python_inc; print(get_python_inc())") ' +configopts += '-DPYTHON_PACKAGES_PATH=$(python3.7 -c "from distutils.sysconfig import get_python_lib; print(get_python_lib())") ' +configopts += '-DOPENCV_EXTRA_MODULES_PATH=%(builddir)s/easybuild_obj/opencv_contrib-3.4.6/modules ' + +sanity_check_paths = { + 'files': [ + 'lib/libopencv_core.%s' % + SHLIB_EXT] + [ + 'lib/python3.7/site-packages/cv2/python-3.7/cv2.cpython-37m-x86_64-linux-gnu.so'] + [ + 'bin/opencv_%s' % + x for x in [ + 'annotation', 'createsamples', 'traincascade']], 'dirs': ['include']} + +modextrapaths = { + 'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages', + 'CLASSPATH': 'share/OpenCV/java', +} + +moduleclass = 'vis' diff --git a/o/OpenFOAM/OpenFOAM-4.1-intel-2017a.eb b/o/OpenFOAM/OpenFOAM-4.1-intel-2017a.eb index 0dc4f738..9ba60850 100644 --- a/o/OpenFOAM/OpenFOAM-4.1-intel-2017a.eb +++ b/o/OpenFOAM/OpenFOAM-4.1-intel-2017a.eb @@ -1,3 +1,5 @@ +# IT4Innovations 2019 + name = 'OpenFOAM' version = '4.1' diff --git a/p/PROJ/PROJ-5.0.0-intel-2017a.eb b/p/PROJ/PROJ-5.0.0-intel-2017a.eb new file mode 100644 index 00000000..570d3049 --- /dev/null +++ b/p/PROJ/PROJ-5.0.0-intel-2017a.eb @@ -0,0 +1,30 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2014-2015 The Cyprus Institute +# Authors:: Thekla Loizou +# License:: MIT/GPL +# +## +easyblock = 'ConfigureMake' + +name = 'PROJ' +version = '5.0.0' + +homepage = 'http://trac.osgeo.org/proj/' +description = """Program proj is a standard Unix filter function which converts +geographic longitude and latitude coordinates into cartesian coordinates""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['http://download.osgeo.org/proj/'] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['bin/cs2cs', 'bin/geod', 'bin/invgeod', 'bin/invproj', + 'bin/nad2bin', 'bin/proj'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/p/Python/Python-3.7.3-GCCcore-6.3.0.eb b/p/Python/Python-3.7.3-GCCcore-6.3.0.eb new file mode 100644 index 00000000..fb9d434a --- /dev/null +++ b/p/Python/Python-3.7.3-GCCcore-6.3.0.eb @@ -0,0 +1,66 @@ +# IT4Innovations 2019 + +name = 'Python' +version = '3.7.3' + +homepage = 'http://python.org/' +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" + +toolchain = {'name': 'GCCcore', 'version': '6.3.0'} +toolchainopts = {'pic': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +builddependencies = [('binutils', '2.27')] + +dependencies = [ + ('bzip2', '1.0.6', '', True), # required for bz2 package in Python stdlib + ('zlib', '1.2.11', '', True), + ('libreadline', '8.0', '', True), + ('ncurses', '6.1', '', True), + ('SQLite', '3.27.2', '', True), + ('XZ', '5.2.4', '', True), + ('GMP', '6.1.2', '', True), # required for pycrypto + ('libffi', '3.2.1', '', True), # required for cryptography + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # Python 3.7 requires OpenSSL >= 1.0.2, uncomment line below if OS version is too old (e.g. CentOS 6) + # ('OpenSSL', '1.1.0j'), +] + +#osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# symlink 'pip' command to 'pip3' that is included with Python installation +# required so we can update pip to version included in extensions, using pip +installopts = " && ln -s %(installdir)s/bin/pip3 %(installdir)s/bin/pip" + +#exts_default_options = { +# 'download_dep_fail': True, +# 'use_pip': True, +#} + +# order is important! +# package versions updated Mar 15th 2019 +#exts_list = [ +# ('pip', '19.0.3', { +# 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], +# 'checksums': ['6e6f197a1abfb45118dbb878b5c859a0edbdd33fd250100bc015b67fded4b9f2'], +# # don't use --ignore-installed, i.e. let pip remove older pip version included with Python +# 'pip_ignore_installed': False, +# }), +# ('setuptools', '40.8.0', { +# 'source_tmpl': '%(name)s-%(version)s.zip', +# 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], +# 'checksums': ['6e4eec90337e849ade7103723b9a99631c1f0d19990d6e8412dc42f5ae8b304d'], +# # don't use --ignore-installed, i.e. let pip remove older setuptools version included with Python +# 'pip_ignore_installed': False, +# }), +# ('wheel', '0.33.1', { +# 'source_urls': ['https://pypi.python.org/packages/source/w/wheel'], +# 'checksums': ['66a8fd76f28977bb664b098372daef2b27f60dc4d1688cfab7b37a09448f0e9d'], +# }) +#] + +moduleclass = 'lang' diff --git a/q/Qualimap/Qualimap-2.2.1.eb b/q/Qualimap/Qualimap-2.2.1.eb new file mode 100644 index 00000000..812c87c2 --- /dev/null +++ b/q/Qualimap/Qualimap-2.2.1.eb @@ -0,0 +1,32 @@ +# IT4Innovations 2019 + +easyblock = "CmdCp" + +name = 'Qualimap' +version = '2.2.1' + +homepage = 'http://qualimap.bioinfo.cipf.es/' +description = """Qualimap 2 is a platform-independent application written in + Java and R that provides both a Graphical User Inteface (GUI) and a command-line + interface to facilitate the quality control of alignment sequencing data and its + derivatives like feature counts.""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['qualimap_v2.2.1.zip'] +source_urls = ['https://bitbucket.org/kokonech/qualimap/downloads'] + +dependencies = [ + ('Java', '1.8.0_121'), +] + +cmds_map = [('.*', "./compile.sh")] + +files_to_copy = [(['output/bazel'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/bazel'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/r/R/R-3.5.3-intel-2017a.eb b/r/R/R-3.5.3-intel-2017a.eb new file mode 100644 index 00000000..cfad747d --- /dev/null +++ b/r/R/R-3.5.3-intel-2017a.eb @@ -0,0 +1,2074 @@ +# IT4Innovations 2019 + +name = 'R' +version = '3.5.3' +versionsuffix = '-Python-2.7.13' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://cloud.r-project.org/src/base/R-%(version_major)s'] +sources = [SOURCE_TAR_GZ] +checksums = ['2bfa37b7bd709f003d6b8a172ddfb6d03ddd2d672d6096439523039f7a8e678c'] + +builddependencies = [ + ('pkg-config', '0.29.2', '', True), +] +dependencies = [ + ('Python', '2.7.13', '', True), + ('X11', '20180604', '', True), + ('Mesa', '18.3.1', '', True), + ('libGLU', '9.0.0', '', True), + ('cairo', '1.14.12', '', True), + ('libreadline', '7.0', '', True), + ('ncurses', '6.1', '', True), + ('bzip2', '1.0.6', '', True), + ('XZ', '5.2.4', '', True), + ('zlib', '1.2.11', '', True), + ('SQLite', '3.27.2', '', True), + ('PCRE', '8.42', '', True), + ('libpng', '1.6.34', '', True), # for plotting in R + ('libjpeg-turbo', '2.0.2', '', True), # for plottting in R + ('LibTIFF', '4.0.7', '', True), + ('Java', '1.8.0_144', '', True), + ('Tk', '8.6.9', '', True), # for tcltk + ('cURL', '7.56.1', '', True), # for RCurl + ('libxml2', '2.9.9', '', True), # for XML + ('GDAL', '2.1.3', versionsuffix, True), # for rgdal + ('PROJ', '5.0.0'), # for rgdal + ('GMP', '6.1.2', '', True), # for igraph + ('NLopt', '2.4.2', '', True), # for nloptr + ('FFTW', '3.3.6'), # for fftw + ('libsndfile', '1.0.28', '', True), # for seewave + ('ICU', '61.1', '', True), # for rJava & gdsfmt + ('HDF5', '1.10.2'), # for hdf5r + ('UDUNITS', '2.2.26'), # for units + ('GSL', '2.5'), # for RcppGSL + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.2h'), +] + +#osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +configopts = "--with-pic --enable-threads --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +# specify that at least EasyBuild v3.5.0 is required, +# since we rely on the updated easyblock for R to configure correctly w.r.t. BLAS/LAPACK +easybuild_version = '3.5.0' + +exts_default_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.r-project.org/src/contrib/', # current version of packages + 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': '%(name)s_%(version)s.tar.gz', +} + +# !! order of packages is important !! +# packages updated on Aug 17, 2018 +exts_list = [ + 'base', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'splines', + 'stats', + 'stats4', + 'tools', + 'utils', + ('Rmpi', '0.6-7', { + 'patches': ['Rmpi-0.6-5_impi5.patch'], + 'checksums': [ + '5c03989ba66db264670909b4ee307b243846bb9581e4781a6e0af7c08f7ec2ac', # Rmpi_0.6-7.tar.gz + 'f753f0b6434295be70fe29d36edb2047c091e465b7ff0cab56b93d55883c8dd3', # Rmpi-0.6-5_impi5.patch + ], + }), + ('abind', '1.4-5', { + 'checksums': ['3a3ace5afbcb86e56889efcebf3bf5c3bb042a282ba7cc4412d450bb246a3f2c'], + }), + ('magic', '1.5-8', { + 'checksums': ['7f8bc26e05003168e9d2dadf64eb9a34b51bc41beba482208874803dee7d6c20'], + }), + ('geometry', '0.3-6', { + 'patches': ['geometry-0.3-4-icc.patch'], + 'checksums': [ + '2be231ac99171367635cd957f27da77705329df97520ab86f655839c41dc0968', # geometry_0.3-6.tar.gz + 'df0ea118e597f31561093e01d50698dac3345d40d082eee05360bb4f94378377', # geometry-0.3-4-icc.patch + ], + }), + ('bit', '1.1-14', { + 'checksums': ['5cbaace1fb643a665a6ca69b90f7a6d624270de82420ca7a44f306753fcef254'], + }), + ('filehash', '2.4-1', { + 'checksums': ['d0e087d338d89372c251c18fc93b53fb24b1750ea154833216ff16aff3b1eaf4'], + }), + ('ff', '2.2-14', { + 'checksums': ['1c6307847275b1b8ad9e2ffdce3f4df3c9d955dc2e8a45e3fd7bfd2b0926e2f0'], + }), + ('bnlearn', '4.3', { + 'checksums': ['78bb1d45977801ffa64f04f4319fa6e1fe9b5268f42b197d33aac074dc46f787'], + }), + ('bootstrap', '2017.2', { + 'checksums': ['44f118c90ee226730175c467a16ac8d5b3169d610424e613da4f73348fd79522'], + }), + ('combinat', '0.0-8', { + 'checksums': ['1513cf6b6ed74865bfdd9f8ca58feae12b62f38965d1a32c6130bef810ca30c1'], + }), + ('deal', '1.2-37', { + 'checksums': ['aadfadfd85792b129063d02d5604dbd1afa5aacd2a6ec7eff7458edf2b5dc2da'], + }), + ('fdrtool', '1.2.15', { + 'checksums': ['65f964aa768d0703ceb7a199adc5e79ca79a6d29d7bc053a262eb533697686c0'], + }), + ('formatR', '1.5', { + 'checksums': ['874c197ae3720ec11b44984a055655b99a698e1912104eb9034c11fdf6104da7'], + }), + ('gtools', '3.8.1', { + 'checksums': ['051484459bd8ad1b03425b8843d24f6828fea18f7357cfa1c192198cc3f4ba38'], + }), + ('gdata', '2.18.0', { + 'checksums': ['4b287f59f5bbf5fcbf18db16477852faac4a605b10c5284c46b93fa6e9918d7f'], + }), + ('GSA', '1.03', { + 'checksums': ['dfb84f92508765c74b170bb5bb2b206a11d10fdb4a74473821b0e51cec5d3ac0'], + }), + ('highr', '0.7', { + 'checksums': ['cabba5b6f2ea82024a49c5ced5f1aa476f864bc52bc129038e319e4e26b6f3b7'], + }), + ('infotheo', '1.2.0', { + 'checksums': ['9b47ebc3db5708c88dc014b4ffec6734053a9c255a9241fcede30fec3e63aaa3'], + }), + ('lars', '1.2', { + 'checksums': ['64745b568f20b2cfdae3dad02fba92ebf78ffee466a71aaaafd4f48c3921922e'], + }), + ('lazy', '1.2-16', { + 'checksums': ['c796c8b987ed1bd9dfddd593e17312ed681fc4fa3a1ecfe51da2def0ac1e50df'], + }), + ('kernlab', '0.9-27', { + 'checksums': ['f6add50ed4097f04d09411491625f8d46eafc4f003b1c1cff78a6fff8cc31dd4'], + }), + ('mime', '0.5', { + 'checksums': ['fcc72115afb0eb43237da872754464f37ae9ae097f332ec7984149b5e3a82145'], + }), + ('markdown', '0.8', { + 'checksums': ['538fd912b2220f2df344c6cca58304ce11e0960de7bd7bd573b3385105d48fed'], + }), + ('mlbench', '2.1-1', { + 'checksums': ['748141d56531a39dc4d37cf0a5165a40b653a04c507e916854053ed77119e0e6'], + }), + ('NLP', '0.1-11', { + 'checksums': ['580551a463c14d7186f62e029504f2e95dd9cbbaaef3f979221ddffafb036597'], + }), + ('mclust', '5.4.1', { + 'checksums': ['c43e19d3df0806c522520260d4de841314548baf91a099a6905bf885a82594ed'], + }), + ('RANN', '2.6', { + 'checksums': ['31d274ff6be29a427cf9a96d7b54fd86d4a57954e0469fbfe58fa895e08ed9e4'], + }), + ('rmeta', '3.0', { + 'checksums': ['b9f9d405935cffcd7a5697ff13b033f9725de45f4dc7b059fd68a7536eb76b6e'], + }), + ('segmented', '0.5-3.0', { + 'checksums': ['98f2f0c23693d49527b43e7b6eb0746f2be7cb25715d2679e43015ec5d99315b'], + }), + ('som', '0.3-5.1', { + 'checksums': ['a6f4c0e5b36656b7a8ea144b057e3d7642a8b71972da387a7133f3dd65507fb9'], + }), + ('SuppDists', '1.1-9.4', { + 'checksums': ['fcb571150af66b95dcf0627298c54f7813671d60521a00ed157f63fc2247ddb9'], + }), + ('stabledist', '0.7-1', { + 'checksums': ['06c5704d3a3c179fa389675c537c39a006867bc6e4f23dd7e406476ed2c88a69'], + }), + ('survivalROC', '1.0.3', { + 'checksums': ['1449e7038e048e6ad4d3f7767983c0873c9c7a7637ffa03a4cc7f0e25c31cd72'], + }), + ('pspline', '1.0-18', { + 'checksums': ['f71cf293bd5462e510ac5ad16c4a96eda18891a0bfa6447dd881c65845e19ac7'], + }), + ('timeDate', '3043.102', { + 'checksums': ['377cba03cddab8c6992e31d0683c1db3a73afa9834eee3e95b3b0723f02d7473'], + }), + ('longmemo', '1.0-0', { + 'checksums': ['acfd7c55389ebce52c7805c55a4b3161102b534c9a50aec891dc77ee6c99ccca'], + }), + ('ADGofTest', '0.3', { + 'checksums': ['9cd9313954f6ecd82480d373f6c5371ca84ab33e3f5c39d972d35cfcf1096846'], + }), + ('MASS', '7.3-50', { + 'checksums': ['06f70922f13ae26f64ecb058241b8789a8b7ded008eeefb51ce75832d3d60a9a'], + }), + ('ade4', '1.7-11', { + 'checksums': ['4ccd799ae99bd625840b866a697c4a48adb751660470bf0d6cf9207b1927a572'], + }), + ('AlgDesign', '1.1-7.3', { + 'checksums': ['df0d56111401474b7f06eaf9ce7145a1cb73b3c5ec4817bad06f56db48af872e'], + }), + ('base64enc', '0.1-3', { + 'checksums': ['6d856d8a364bcdc499a0bf38bfd283b7c743d08f0b288174fba7dbf0a04b688d'], + }), + ('BH', '1.66.0-1', { + 'checksums': ['17d9eb5512d74aa7dd02ec98953408422e728b01ce63493a6a473070b9596a92'], + }), + ('brew', '1.0-6', { + 'checksums': ['d70d1a9a01cf4a923b4f11e4374ffd887ad3ff964f35c6f9dc0f29c8d657f0ed'], + }), + ('Brobdingnag', '1.2-6', { + 'checksums': ['19eccaed830ce9d93b70642f6f126ac66722a98bbd48586899cc613dd9966ad4'], + }), + ('corpcor', '1.6.9', { + 'checksums': ['2e4fabd1d3936fecea67fa365233590147ca50bb45cf80efb53a10345a8a23c2'], + }), + ('longitudinal', '1.1.12', { + 'checksums': ['d4f894c38373ba105b1bdc89e3e7c1b215838e2fb6b4470b9f23768b84e603b5'], + }), + ('backports', '1.1.2', { + 'checksums': ['e85b93675c6703e1da790dce1f8fb61f27b87e92722c7f0909273ed5074cb456'], + }), + ('checkmate', '1.8.5', { + 'checksums': ['e94d2a3971908ce2a8252a9320ae7e030e0364b0ecd5385ab98e600aca7cd1e0'], + }), + ('Rcpp', '0.12.18', { + 'checksums': ['fcecd01e53cfcbcf58dec19842b7235a917b8d98988e4003cc090478c5bbd300'], + }), + ('cubature', '1.4', { + 'checksums': ['e4cca932af6255b448ceffe86966cc892379b0b8486d905fb9f84eb1d11aa2c1'], + }), + ('DEoptimR', '1.0-8', { + 'checksums': ['846911c1b2561a9fae73a8c60a21a5680963ebb0050af3c1f1147ae9a121e5ef'], + }), + ('digest', '0.6.15', { + 'checksums': ['882e74bb4f0722260bd912fd7f8a0fcefcf44c558f43ac8a03d63e53d25444c5'], + }), + ('fastmatch', '1.1-0', { + 'checksums': ['20b51aa4838dbe829e11e951444a9c77257dcaf85130807508f6d7e76797007d'], + }), + ('ffbase', '0.12.3', { + 'checksums': ['a52998ec589c2b519034757919565473273f8b73486d8333ba7ff6deec3ae9db'], + }), + ('iterators', '1.0.10', { + 'checksums': ['a9e1b2302828d4527766ce12fa9ae06faf8d51e819a43f8efef632b6ddf471e8'], + }), + ('maps', '3.3.0', { + 'checksums': ['199afe19a4edcef966ae79ef802f5dcc15a022f9c357fcb8cae8925fe8bd2216'], + }), + ('nnls', '1.4', { + 'checksums': ['0e5d77abae12bc50639d34354f96a8e079408c9d7138a360743b73bd7bce6c1f'], + }), + ('sendmailR', '1.2-1', { + 'checksums': ['04feb08c6c763d9c58b2db24b1222febe01e28974eac4fe87670be6fb9bff17c'], + }), + ('dotCall64', '1.0-0', { + 'checksums': ['69318dc6b8aecc54d4f789c8105e672198363b395f1a764ebaeb54c0473d17ad'], + }), + ('spam', '2.2-0', { + 'checksums': ['a18564b6930c10c2f5d1002414d6ec6ab335d57a29013f7ecd6d18e16a43670b'], + }), + ('subplex', '1.5-4', { + 'checksums': ['ff94cf6b1560f78c31712c05bc2bc1b703339e09c7fc777ee94abf15fa7a8b81'], + }), + ('stringi', '1.2.4', { + 'checksums': ['01570a200a25bde62c47b241636e67d73425efa10b924b63959a867796ea86f8'], + }), + ('magrittr', '1.5', { + 'checksums': ['05c45943ada9443134caa0ab24db4a962b629f00b755ccf039a2a2a7b2c92ae8'], + }), + ('glue', '1.3.0', { + 'checksums': ['789e5a44c3635c3d3db26666e635e88adcf61cd02b75465125d95d7a12291cee'], + }), + ('stringr', '1.3.1', { + 'checksums': ['7a8b8ea038e45978bd797419b16793f44f10c5355ad4c64b74d15276fef20343'], + }), + ('evaluate', '0.11', { + 'checksums': ['b04805ffb56d82e2d5b044aa32de7e9ef4162ea619fd368f83e03dbd49631bcd'], + }), + ('logspline', '2.1.11', { + 'checksums': ['781e6eaf31a7000c303f7c8494160d00eaceebc31dfb6946622f4e7301ed871c'], + }), + ('ncbit', '2013.03.29', { + 'checksums': ['4480271f14953615c8ddc2e0666866bb1d0964398ba0fab6cc29046436820738'], + }), + ('permute', '0.9-4', { + 'checksums': ['a541a5f5636ddd67fd856d3e11224f15bc068e96e23aabe3e607a7e7c2fc1cf1'], + }), + ('plotrix', '3.7-2', { + 'checksums': ['0855361221a2b03f57a9e504357f80289dc08ffe95cce2edf19efe47d2eea343'], + }), + ('randomForest', '4.6-14', { + 'checksums': ['f4b88920419eb0a89d0bc5744af0416d92d112988702dc726882394128a8754d'], + }), + ('scatterplot3d', '0.3-41', { + 'checksums': ['4c8326b70a3b2d37126ca806771d71e5e9fe1201cfbe5b0d5a0a83c3d2c75d94'], + }), + ('SparseM', '1.77', { + 'checksums': ['a9329fef14ae4fc646df1f4f6e57efb0211811599d015f7bc04c04285495d45c'], + }), + ('tripack', '1.3-8', { + 'checksums': ['6bb340292a9629a41a0e0664335ddd97be3ad46bca225034db5dfb6efe01c75d'], + }), + ('irace', '3.1', { + 'checksums': ['b8eb73546d38d6fc4b926940f072176a2be377b477f82e8cee131086ba5e7064'], + }), + ('rJava', '0.9-10', { + 'checksums': ['c9934bdd3ae08746c4d4b9faa235af2c147a71235a9af108e58bff11c179fe78'], + }), + ('lattice', '0.20-35', { + 'checksums': ['0829ab0f4dec55aac6a73bc3411af68441ddb1b5b078d680a7c2643abeaa965d'], + }), + ('RColorBrewer', '1.1-2', { + 'checksums': ['f3e9781e84e114b7a88eb099825936cc5ae7276bbba5af94d35adb1b3ea2ccdd'], + }), + ('latticeExtra', '0.6-28', { + 'checksums': ['780695323dfadac108fb27000011c734e2927b1e0f069f247d65d27994c67ec2'], + }), + ('Matrix', '1.2-14', { + 'checksums': ['49a6403547b66675cb44c1afb04bb87130c054510cb2b94971435a826ab41396'], + }), + ('png', '0.1-7', { + 'checksums': ['e269ff968f04384fc9421d17cfc7c10cf7756b11c2d6d126e9776f5aca65553c'], + }), + ('RcppArmadillo', '0.9.100.5.0', { + 'checksums': ['810a7750ba64f0538a1e6e62a8d8e956ca006ac8077e4a67ee36dc281dc4d2c7'], + }), + ('plyr', '1.8.4', { + 'checksums': ['60b522d75961007658c9806f8394db27989f1154727cb0bb970062c96ec9eac5'], + }), + ('gtable', '0.2.0', { + 'checksums': ['801e4869830ff3da1d38e41f5a2296a54fc10a7419c6ffb108582850c701e76f'], + }), + ('reshape2', '1.4.3', { + 'checksums': ['8aff94c935e75032344b52407593392ddd4e16a88bb206984340c816d42c710e'], + }), + ('dichromat', '2.0-0', { + 'checksums': ['31151eaf36f70bdc1172da5ff5088ee51cc0a3db4ead59c7c38c25316d580dd1'], + }), + ('colorspace', '1.3-2', { + 'checksums': ['dd9fd2342b650456901d014e7ff6d2e201f8bec0b555be63b1a878d2e1513e34'], + }), + ('munsell', '0.5.0', { + 'checksums': ['d0f3a9fb30e2b5d411fa61db56d4be5733a2621c0edf017d090bdfa5e377e199'], + }), + ('labeling', '0.3', { + 'checksums': ['0d8069eb48e91f6f6d6a9148f4e2dc5026cabead15dd15fc343eff9cf33f538f'], + }), + ('R6', '2.2.2', { + 'checksums': ['087756f471884c3b3ead80215a7cc5636a78b8a956e91675acfe2896426eae8f'], + }), + ('viridisLite', '0.3.0', { + 'checksums': ['780ea12e7c4024d5ba9029f3a107321c74b8d6d9165262f6e64b79e00aa0c2af'], + }), + ('scales', '1.0.0', { + 'checksums': ['0c1f4a14edd336a404da34a3cc71a6a9d0ca2040ba19360c41a79f36e06ca30c'], + }), + ('rlang', '0.2.2', { + 'checksums': ['c9119420ff0caeb6b0fcee8800e2fb1ec072e291e0e53b8acea3c4cf49420d33'], + }), + ('assertthat', '0.2.0', { + 'checksums': ['d73ef79b1e75293ed889a99571b237a95829c099f7da094d4763f83ea6fde5f2'], + }), + ('crayon', '1.3.4', { + 'checksums': ['fc6e9bf990e9532c4fcf1a3d2ce22d8cf12d25a95e4779adfa17713ed836fa68'], + }), + ('cli', '1.0.0', { + 'checksums': ['8fa3dbfc954ca61b8510f767ede9e8a365dac2ef95fe87c715a0f37d721b5a1d'], + }), + ('utf8', '1.1.4', { + 'checksums': ['f6da9cadfc683057d45f54b43312a359cf96ec2731c0dda18a8eae31d1e31e54'], + }), + ('fansi', '0.3.0', { + 'checksums': ['dd6401d5c91ff4c45d752cceddd5379d1ae39a8a1196f236b0bc0ec6d691b88c'], + }), + ('pillar', '1.3.0', { + 'checksums': ['aed845ae4888be9a7340eed57536e3fe6cb46e89d905897fb9b0635797cfcae0'], + }), + ('tibble', '1.4.2', { + 'checksums': ['11670353ff7059a55066dd075d1534d6a27bc5c3583fb9bc291bf750a75c5b17'], + }), + ('lazyeval', '0.2.1', { + 'checksums': ['83b3a43e94c40fe7977e43eb607be0a3cd64c02800eae4f2774e7866d1e93f61'], + }), + ('withr', '2.1.2', { + 'checksums': ['41366f777d8adb83d0bdbac1392a1ab118b36217ca648d3bb9db763aa7ff4686'], + }), + ('nlme', '3.1-137', { + 'checksums': ['ac82a5d15233dfca2a1aaf9f3ceee018adfe2983344750023dd433ed49b07ba8'], + }), + ('mgcv', '1.8-24', { + 'checksums': ['a9f8e9823f6d6a4a568d151f2fa619bb2811df73c013e9a105720d9b32b4740c'], + }), + ('ggplot2', '3.0.0', { + 'checksums': ['c768f5039ef684c3874a92210a975af52e74f00927ff31c31a73eb1fe139694d'], + }), + ('pROC', '1.12.1', { + 'checksums': ['9266a7d857313e36f86ad2a7e7b0d95240960a26707036409ac9776754324d15'], + }), + ('quadprog', '1.5-5', { + 'checksums': ['d999620688354c283de5bb305203f5db70271b4dfdc23577cae8c2ba94c9e349'], + }), + ('BB', '2014.10-1', { + 'checksums': ['a09f67e3a6ef36db660e4dc92832dfad4a7591ae9fadc2a265c8770ffb1e2fd2'], + }), + ('BBmisc', '1.11', { + 'checksums': ['1ea48c281825349d8642a661bb447e23bfd651db3599bf72593bfebe17b101d2'], + }), + ('fail', '1.3', { + 'checksums': ['ede8aa2a9f2371aff5874cd030ac625adb35c33954835b54ab4abf7aeb34d56d'], + }), + 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+ }), + ('locfit', '1.5-9.1', { + 'checksums': ['f524148fdb29aac3a178618f88718d3d4ac91283014091aa11a01f1c70cd4e51'], + }), + ('GGally', '1.4.0', { + 'checksums': ['9a47cdf004c41f5e4024327b94227707f4dad3a0ac5556d8f1fba9bf0a6355fe'], + }), + ('beanplot', '1.2', { + 'checksums': ['49da299139a47171c5b4ccdea79ffbbc152894e05d552e676f135147c0c9b372'], + }), + ('clValid', '0.6-6', { + 'checksums': ['c13ef1b6258e34ba53615b78f39dbe4d8ba47b976b3c24a3eedaecf5ffba19ed'], + }), + ('matrixStats', '0.54.0', { + 'patches': ['matrixStats-0.53.1_O1.patch'], + 'checksums': [ + '8f0db4e181300a208b9aedbebfdf522a2626e6675d2662656efb8ba71b05a06f', # matrixStats_0.54.0.tar.gz + '96ef21a1d5ee4ccd1f4a6b74ef5aa2699a52c38b34613d8ff9f3c4af952aa8fd', # matrixStats-0.53.1_O1.patch + ], + }), + ('DiscriMiner', '0.1-29', { + 'checksums': ['5aab7671086ef9940e030324651976456f0e84dab35edb7048693ade885228c6'], + }), + ('ellipse', '0.4.1', { + 'checksums': ['1a9a9c52195b26c2b4d51ad159ab98aff7aa8ca25fdc6b2198818d1a0adb023d'], + }), + ('leaps', '3.0', { + 'checksums': ['55a879cdad5a4c9bc3b5697dd4d364b3a094a49d8facb6692f5ce6af82adf285'], + }), + ('pbkrtest', '0.4-7', { + 'checksums': ['5cbb03ad2b2468720a5a610a0ebda48ac08119a34fca77810a85f554225c23ea'], + }), + ('carData', '3.0-1', { + 'checksums': ['12e523d3507aa4ef6d7aa594f8f4ad0deff1e0e5334caecf4e613ec31f6f77a4'], + }), + ('maptools', '0.9-3', { + 'checksums': ['289f5051e6b562f7a5e88fdcf8db9fa01b0e4261f7c5c7330ef3a71a03d8ab43'], + }), + ('zip', '1.0.0', { + 'checksums': ['6fa9ec7b093b8c717c50f205d4335c31c43c2ecb51c0242c9a0337d8d84df965'], + }), + ('openxlsx', '4.1.0', { + 'checksums': ['ab7b127353061a0e1cd621783366ffdd7c858c6df31cbbdd39aaa353af10ffd8'], + }), + ('rematch', '1.0.1', { + 'checksums': ['a409dec978cd02914cdddfedc974d9b45bd2975a124d8870d52cfd7d37d47578'], + }), + ('cellranger', '1.1.0', { + 'checksums': ['5d38f288c752bbb9cea6ff830b8388bdd65a8571fd82d8d96064586bd588cf99'], + }), + ('readxl', '1.1.0', { + 'checksums': ['b63d21fc6510acb373e96deaec45e966a523ec75cbec75a089529297ed443116'], + }), + ('rio', '0.5.10', { + 'checksums': ['3dc2898ca3c5bbf62295b5b961a759a27a5739f7ce444eb51b933e20f7781d95'], + }), + ('car', '3.0-0', { + 'checksums': ['30a06984080a2e30c9296d2b0371bdfb8e29b5b7eb6e53f8877d51b4959242cf'], + }), + ('flashClust', '1.01-2', { + 'checksums': ['48a7849bb86530465ff3fbfac1c273f0df4b846e67d5eee87187d250c8bf9450'], + }), + ('FactoMineR', '1.41', { + 'checksums': ['a9889d69e298b8a01e8d0a5a54260730e742c95681e367d759829aad9a8740c0'], + }), + ('flexclust', '1.3-5', { + 'checksums': ['dbf49969c93a7b314d9dc3299a0764ed9a804ba7dcbdc08a1235f244f4b85059'], + }), + ('flexmix', '2.3-14', { + 'checksums': ['837c7f175a211b3c484b2c7b81ec9729889a614c5c6e7d70c95a2c1d60ff846a'], + }), + ('prabclus', '2.2-6', { + 'checksums': ['41792980e40ba18204fab92d85120dcd468860e2204e52fb42636c6f7aee5a62'], + }), + ('diptest', '0.75-7', { + 'checksums': ['462900100ca598ef21dbe566bf1ab2ce7c49cdeab6b7a600a50489b05f61b61b'], + }), + ('trimcluster', '0.1-2.1', { + 'checksums': ['b64a872a6c2ad677dfeecc776c9fe5aff3e8bab6bc6a8c86957b5683fd5d2300'], + }), + ('fpc', '2.1-11.1', { + 'checksums': ['ccfe4c5acb8b7c313b7c07076b994900b09f1d13459a0ca7815de337e12931ab'], + }), + ('BiasedUrn', '1.07', { + 'checksums': ['2377c2e59d68e758a566452d7e07e88663ae61a182b9ee455d8b4269dda3228e'], + }), + ('TeachingDemos', '2.10', { + 'checksums': ['2ef4c2e36ba13e32f66000e84281a3616584c86b255bca8643ff3fe4f78ed704'], + }), + ('kohonen', '3.0.6', { + 'checksums': ['8bdddc9d51635580256c80e801bb7dc9981d637eeaf2cffcbd83ec64641a202c'], + }), + ('base64', '2.0', { + 'checksums': ['8e259c2b12446197d1152b83a81bab84ccb5a5b77021a9b5645dd4c63c804bd1'], + }), + ('doRNG', '1.7.1', { + 'checksums': ['27533d54464889d1c21301594137fc0f536574e3a413d61d7df9463ab12a67e9'], + }), + ('nleqslv', '3.3.2', { + 'checksums': ['f54956cf67f9970bb3c6803684c84a27ac78165055745e444efc45cfecb63fed'], + }), + ('Deriv', '3.8.5', { + 'checksums': ['40d43da3a8e93068874415995fdeba9ca2ef109b55211b228b43d1fa85e62520'], + }), + ('RGCCA', '2.1.2', { + 'checksums': ['20f341fca8f616c556699790814debdf2ac7aa4dd9ace2071100c66af1549d7d'], + }), + ('pheatmap', '1.0.10', { + 'checksums': ['c7fde6bf25decec1945af18fbab2edcd6a129a3b31817bc50779fcc561d1fdcb'], + }), + ('pvclust', '2.0-0', { + 'checksums': ['1a4615214992307fd7c786cf4607a3ae2af5c0d4067f5053e1c195798a70d741'], + }), + ('RCircos', '1.2.0', { + 'checksums': ['7fd06e2efc33b5c30fc4ba3945b04021f255ba4ffcc394348df7488b9394444a'], + }), + ('lambda.r', '1.2.3', { + 'checksums': ['0cd8e37ba1a0960888016a85d492da51a57df54bd65ff920b08c79a3bfbe8631'], + }), + ('futile.options', '1.0.1', { + 'checksums': ['7a9cc974e09598077b242a1069f7fbf4fa7f85ffe25067f6c4c32314ef532570'], + }), + ('futile.logger', '1.4.3', { + 'checksums': ['5e8b32d65f77a86d17d90fd8690fc085aa0612df8018e4d6d6c1a60fa65776e4'], + }), + ('VennDiagram', '1.6.20', { + 'checksums': ['e51cb3fff23c6ec8191966490bf875a7415f8725d4054bae881a25febb9281c5'], + }), + ('xlsxjars', '0.6.1', { + 'checksums': ['37c1517f95f8bca6e3514429394d2457b9e62383305eba288416fb53ab2e6ae6'], + }), + ('xlsx', '0.6.1', { + 'checksums': ['a580bd16b5477c1c185bf681c12c1ffff4088089f97b6a37997913d93ec5a8b4'], + }), + ('uroot', '2.0-9', { + 'patches': ['uroot-2.0-9_CUDA.patch'], + 'checksums': [ + '9b7616d64ed87b29ee45368bf7f08d15c0ec058e450c69171fbfecb44943ac5b', # uroot_2.0-9.tar.gz + '6be1eb433301f0078942da7268d927bfd25aba5087a86d671dd0a098e976117b', # uroot-2.0-9_CUDA.patch + ], + }), + ('forecast', '8.4', { + 'checksums': ['695cdf0376f1f519a236bec52722c41ea5896f2064f1403d0ad4914c5611188f'], + }), + ('fma', '2.3', { + 'checksums': ['f516eff79e14d4ffefcdc2db06d97ae57f998e37e871264457078f671384fafc'], + }), + ('expsmooth', '2.3', { + 'checksums': ['ac7da36347f983d6ec71715daefd2797fe2fc505c019f4965cff9f77ce79982a'], + }), + ('fpp', '0.5', { + 'checksums': ['9c87dd8591b8a87327cae7a03fd362a5492495a96609e5845ccbeefb96e916cb'], + }), + ('tensor', '1.5', { + 'checksums': ['e1dec23e3913a82e2c79e76313911db9050fb82711a0da227f94fc6df2d3aea6'], + }), + ('polyclip', '1.9-1', { + 'checksums': ['c5d578bf1b34fdc44c909a2cbd1e33ed842f09dd045005885669683b94fcb164'], + }), + ('goftest', '1.1-1', { + 'checksums': ['db6cb1ff6e18520b172e93fca5d7d953bd2d06f4af73bf90aa0a09df8cad71a0'], + }), + ('spatstat.utils', '1.9-0', { + 'checksums': ['3aef50d0bb48dbc57c95b1fb7af37c400499200e9f38cced1462027fcb1afd79'], + }), + ('spatstat.data', '1.3-1', { + 'checksums': ['c3ad35677c78aa04e6fb1927aa15abd21ff1fdac58a8b365ce54bc93034b8b8f'], + }), + ('spatstat', '1.56-1', { + 'checksums': ['8683dd4860311e70026f62e2590a9d7dda932484555d4c45f97cdb96c7cb7a60'], + }), + ('rgdal', '1.3-4', { + 'checksums': ['9dab55eca80e9df4982ee91bfcddde8195187b41120a824e27e0732c4c2575da'], + }), + ('gdalUtils', '2.0.1.14', { + 'checksums': ['890a502b2eb5f1b23655fab94caad5d32adca05b93f5db1d96d9dcde3f0e7737'], + }), + ('pracma', '2.1.4', { + 'checksums': ['0ccaef86c1446971ca244e6dbcc605222c2f652b23a5db921070e37a6240f5f9'], + }), + ('RCurl', '1.95-4.11', { + 'checksums': ['792a091cf5b80c460d98ed80fe1cad5d9406d0afc32e466e970ee4d2f68c97bf'], + }), + ('bio3d', '2.3-4', { + 'checksums': ['f9b39ab242cbedafcd98c1732cb1f5c0dd9ef66e28be39695e3420dd93e2bafe'], + }), + ('AUC', '0.3.0', { + 'checksums': ['e705f2c63d336249d19187f3401120d738d42d323fce905f3e157c2c56643766'], + }), + ('interpretR', '0.2.4', { + 'checksums': ['4c08a6dffd6fd5764f27812f3a085c53e6a21d59ae82d903c9c0da93fd1dd059'], + }), + ('cvAUC', '1.1.0', { + 'checksums': ['c4d8ed53b93869650aa2f666cf6d1076980cbfea7fa41f0b8227595be849738d'], + }), + ('SuperLearner', '2.0-24', { + 'checksums': ['adf658a2c885b125c570fb9b4fa9b84a6610cfa821f24c5a660d0d2327c4ef43'], + }), + ('lpSolve', '5.6.13', { + 'checksums': ['d5d41c53212dead4fd8e6425a9d3c5767cdc5feb19d768a4704116d791cf498d'], + }), + ('mediation', '4.4.6', { + 'checksums': ['b17784c001305d5f3b84573a673cef31475520d9baec972e42431be193bf305f'], + }), + ('ModelMetrics', '1.2.0', { + 'checksums': ['3021ae88733695a35d66e279e8e61861431f14c9916a341f0a562f675cf6ede9'], + }), + ('CVST', '0.2-2', { + 'checksums': ['854b8c983427ecf9f2f7798c4fd1c1d06762b5b0bcb1045502baadece6f78316'], + }), + ('DRR', '0.0.3', { + 'checksums': ['7493389c1fb9ddc4d4261e15bf2d4198603227275688b1d3e3994d47e976a1f9'], + }), + ('dimRed', '0.1.0', { + 'checksums': ['fb0cef7a21b8a5219c74e5227a282168599dd63e904130366f3d2fed8a625a39'], + }), + ('lubridate', '1.7.4', { + 'checksums': ['510ca87bd91631c395655ee5029b291e948b33df09e56f6be5839f43e3104891'], + }), + ('ddalpha', '1.3.4', { + 'checksums': ['41ba9952deb2e81713f2e308357d3b7adfe348135ba7e3c94c347db5e0029699'], + }), + ('gower', '0.1.2', { + 'checksums': ['eb91b2d2784d237c7055abcf3cfa4fc0b2226b855a0c29fc5a4e8eaa689079d5'], + }), + ('RcppRoll', '0.3.0', { + 'checksums': ['cbff2096443a8a38a6f1dabf8c90b9e14a43d2196b412b5bfe5390393f743f6b'], + }), + ('recipes', '0.1.3', { + 'checksums': ['be468f7b9b479e13785e90d239c4784679ad7648efd3d02cfc2a58a2fb1d10ef'], + }), + ('caret', '6.0-80', { + 'checksums': ['0705874a30bd5960a51616338534255734e792a4af3f28368e1040f7bf820d76'], + }), + ('adabag', '4.2', { + 'checksums': ['47019eb8cefc8372996fbb2642f64d4a91d7cedc192690a8d8be6e7e03cd3c81'], + }), + ('parallelMap', '1.3', { + 'checksums': ['a52d93572c1b85281e41d8e3c2db97dda5fce96c222e04171b4489ec5000cd08'], + }), + ('ParamHelpers', '1.11', { + 'checksums': ['1614f4c0842cf822befc01228ab7263417f3423dd6a1dc24347b14f8491637a0'], + }), + ('ggvis', '0.4.3', { + 'checksums': ['34d517783016aaa1c4bef8972f4c06df5cd9ca0568035b647e60a8369043ecdc'], + }), + ('mlr', '2.12.1', { + 'checksums': ['9cbb98b82eb493b783fe8808a18d76f32881d941364466ef8829b852fabbc82c'], + }), + ('unbalanced', '2.0', { + 'checksums': ['9be32b1ce9d972f1abfff2fbe18f5bb5ba9c3f4fb1282063dc410b82ad4d1ea2'], + }), + ('RSNNS', '0.4-11', { + 'checksums': ['87943126e98ae47f366e3025d0f3dc2f5eb0aa2924508fd9ee9a0685d7cb477c'], + }), + ('abc.data', '1.0', { + 'checksums': ['b242f43c3d05de2e8962d25181c6b1bb6ca1852d4838868ae6241ca890b161af'], + }), + ('abc', '2.1', { + 'checksums': ['0bd2dcd4ee1915448d325fb5e66bee68e0497cbd91ef67a11b400b2fbe52ff59'], + }), + ('lhs', '0.16', { + 'checksums': ['9cd199c3b5b2be1736d585ef0fd39a00e31fc015a053333a7a319668d0809425'], + }), + ('tensorA', '0.36.1', { + 'checksums': ['c7ffe12b99867675b5e9c9f31798f9521f14305c9d9f9485b171bcbd8697d09c'], + }), + ('EasyABC', '1.5', { + 'checksums': ['1dd7b1383a7c891cafb34d9cec65d92f1511a336cff1b219e63c0aa791371b9f'], + }), + ('shape', '1.4.4', { + 'checksums': ['f4cb1b7d7c84cf08d2fa97f712ea7eb53ed5fa16e5c7293b820bceabea984d41'], + }), + ('whisker', '0.3-2', { + 'checksums': ['484836510fcf123a66ddd13cdc8f32eb98e814cad82ed30c0294f55742b08c7c'], + }), + ('commonmark', '1.5', { + 'checksums': ['7fa81635bf0d26395fdd8dd830e16f9910a388faa949b2874aed7a505f2e9dcb'], + }), + ('desc', '1.2.0', { + 'checksums': ['e66fb5d4fc7974bc558abcdc107a1f258c9177a29dcfcf9164bc6b33dd08dae8'], + }), + ('callr', '2.0.4', { + 'checksums': ['0e3fa4e047f61f4e29ab2dee8f585861fb77a5f5ad6c81f125e98b6130c6a380'], + }), + ('pkgbuild', '1.0.0', { + 'checksums': ['a9691dd3e27cd053a5d4cc8df8b46baa9915c95d4ce03b8e4cb4c77a0a403f82'], + }), + ('pkgload', '1.0.0', { + 'checksums': ['fd8a20ccee59b3c8affaf287ac21c6f7c9adf4f2e5541227a1da256c931052e6'], + }), + ('roxygen2', '6.1.0', { + 'checksums': ['4af522cf79beebf96e591b8caf1465018e91310d12bb1a39a2cbed153499294a'], + }), + ('git2r', '0.23.0', { + 'checksums': ['3fd37340572ecc3ac8daf771b82a851635f8f7d416a4ab84f7d69522be044504'], + }), + ('rversions', '1.0.3', { + 'checksums': ['21d0809f46505de89a2be7be9449e39c39cff5bc77e584dec976ee6c0b884f44'], + }), + ('devtools', '1.13.6', { + 'checksums': ['b9749de8b095bd4983ef95a7700e53e4295a747fd20e9eae77dc372f5b2236b5'], + }), + ('Rook', '1.1-1', { + 'checksums': ['00f4ecfa4c5c57018acbb749080c07154549a6ecaa8d4130dd9de79427504903'], + }), + ('Cairo', '1.5-9', { + 'patches': ['Cairo-1.5-9.patch'], + 'checksums': [ + '2a867b6cae96671d6bc3acf9334d6615dc01f6ecf1953a27cde8a43c724a38f4', # Cairo_1.5-9.tar.gz + '3efa99888503949eefe586faf3f6f80566674c5a8cfb2c62b648b42f22466dfa', # Cairo-1.5-9.patch + ], + }), + ('RMTstat', '0.3', { + 'checksums': ['81eb4c5434d04cb66c749a434c33ceb1c07d92ba79765d4e9233c13a092ec2da'], + }), + ('Lmoments', '1.2-3', { + 'checksums': ['e974b65d6116d540bc2c934c40c5552f64d7781b77c259a5b7724b1338c9e08e'], + }), + ('distillery', '1.0-4', { + 'checksums': ['3d3a8445471b19a6b652761ca783994b2d2108b64ff539b0597a9db9697d17d4'], + }), + ('extRemes', '2.0-9', { + 'checksums': ['7543e0cb97f12d0dad5b60575b98e6b7e73dc6e87e622b8c39def734a562fb32'], + }), + ('pixmap', '0.4-11', { + 'checksums': ['6fa010749a59cdf56aad9f81271473b7d55697036203f2cd5d81372bcded7412'], + }), + ('tkrplot', '0.0-24', { + 'checksums': ['2873630a37d7ae1e09a5803d9a89ca0494edd83526c7b1860d9246543722f311'], + }), + ('misc3d', '0.8-4', { + 'checksums': ['75de3d2237f67f9e58a36e80a6bbf7e796d43eb46789f2dd1311270007bf5f62'], + }), + ('multicool', '0.1-10', { + 'checksums': ['5bb0cb0d9eb64420c862877247a79bb0afadacfe23262ec8c3fa26e5e34d6ff9'], + }), + ('plot3D', '1.1.1', { + 'checksums': ['f6fe4a001387132626fc553ed1d5720d448b8064eb5a6917458a798e1d381632'], + }), + ('plot3Drgl', '1.0.1', { + 'checksums': ['466d428d25c066c9c96d892f24da930513d42b1bdf76d3b53628c3ba13c3e48a'], + }), + ('OceanView', '1.0.4', { + 'checksums': ['e67f6f376737e1e5cf22fdfe2769a8f674e90c886b0e43942e97d9a3e6924f1c'], + }), + ('ks', '1.11.3', { + 'checksums': ['0d69e85fb4dc97045fdc273b36cf44b185ab60a6d7b17e1eb0c6dddf074be47c'], + }), + ('logcondens', '2.1.5', { + 'checksums': ['72e61abc1f3eb28830266fbe5b0da0999eb5520586000a3024e7c26be93c02eb'], + }), + ('Iso', '0.0-17', { + 'checksums': ['c007d6eaf6335a15c1912b0804276ff39abce27b7a61539a91b8fda653629252'], + }), + ('penalized', '0.9-51', { + 'checksums': ['eaa80dca99981fb9eb576261f30046cfe492d014cc2bf286c447b03a92e299fd'], + }), + ('clusterRepro', '0.5-1.1', { + 'checksums': ['b7fcb9db0c762a2e6e22a0a0689affd73504c56f13c13b04272a946630334e6f'], + }), + ('randomForestSRC', '2.7.0', { + 'checksums': ['2bcb2734f7a3f6e372bd234b2db23fc9c896e9663032c5f04babb54a2093988b'], + }), + ('sm', '2.2-5.5', { + 'checksums': ['43e212a14c364b98b10018b56fe0a619ccffe4bde1294e6c45b3eafe7caf82e7'], + }), + ('pbivnorm', '0.6.0', { + 'checksums': ['07c37d507cb8f8d2d9ae51a9a6d44dfbebd8a53e93c242c4378eaddfb1cc5f16'], + }), + ('lavaan', '0.6-2', { + 'checksums': ['91d5aea1468394f9e2bda773ab51f8a16a198bfc1d8474c1c48bcaba87f9c0be'], + }), + ('matrixcalc', '1.0-3', { + 'checksums': ['17e6caeeecd596b850a6caaa257984398de9ec5d2b41ce83c428f112614b9cb0'], + }), + ('arm', '1.10-1', { + 'checksums': ['6f1158c9295e65bd649139224497d3356189b931ff143f9b374daae72548776f'], + }), + ('mi', '1.0', { + 'checksums': ['34f44353101e8c3cb6bf59c5f4ff5b2391d884dcbb9d23066a11ee756b9987c0'], + }), + ('visNetwork', '2.0.4', { + 'checksums': ['0503408b195a812bcf589f8d34f5c3f9a38e92e78b699c3c7d737f7054d5ed15'], + }), + ('rgexf', '0.15.3', { + 'checksums': ['2e8a7978d1fb977318e6310ba65b70a9c8890185c819a7951ac23425c6dc8147'], + }), + ('influenceR', '0.1.0', { + 'checksums': ['4fc9324179bd8896875fc0e879a8a96b9ef2a6cf42a296c3b7b4d9098519e98a'], + }), + ('downloader', '0.4', { + 'checksums': ['1890e75b028775154023f2135cafb3e3eed0fe908138ab4f7eff1fc1b47dafab'], + }), + ('DiagrammeR', '1.0.0', { + 'checksums': ['2b186dae1b19018681b979e9444bf16559c42740d8382676fbaf3b0f8a44337e'], + }), + ('sem', '3.1-9', { + 'checksums': ['4a33780202506543da85877cd2813250114420d6ec5e75457bc67477cd332cb9'], + }), + ('jpeg', '0.1-8', { + 'checksums': ['d032befeb3a414cefdbf70ba29a6c01541c54387cc0a1a98a4022d86cbe60a16'], + }), + ('network', '1.13.0.1', { + 'checksums': ['60b71983b638c7812ccd986ead438ed7bb2bd8080c01c85d8ea70587275e73ad'], + }), + ('statnet.common', '4.1.4', { + 'checksums': ['2cea993a52f27d8a5a5e91d3a5dcffcc86523001f6f646cd26ec37c2486dbe91'], + }), + ('sna', '2.4', { + 'checksums': ['2292b3190e8d879e494527ae9d9d1174c31cb4183749ecb455aedd8d534048cf'], + }), + ('glasso', '1.10', { + 'checksums': ['e6fa74139a2b5f475f134cc0d6b4000ed870beb5865294e9f1d68b4d42bf505b'], + }), + ('huge', '1.2.7', { + 'checksums': ['042b771c334cf4d1a92c5c546ca025238919f772a50457594b7e0bd243498d8c'], + }), + ('d3Network', '0.5.2.1', { + 'checksums': ['5c798dc0c87c6d574abb7c1f1903346e6b0fec8adfd1df7aef5e4f9e7e3a09be'], + }), + ('ggm', '2.3', { + 'checksums': ['832ffe81ff87c6f1a6644e689ebbfb172924b4c4584ac8108d1244d153219ed8'], + }), + ('BDgraph', '2.51', { + 'checksums': 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}), + ('pim', '2.0.1', { + 'checksums': ['174568a01f68b9601a4ea89ca5857bf4888242f00e4212bfb7a422d6292300d5'], + }), + ('minpack.lm', '1.2-1', { + 'checksums': ['14cb7dba3ef2b46da0479b46d46c76198e129a31f6157cd8b37f178adb15d5a3'], + }), + ('rootSolve', '1.7', { + 'checksums': ['08b3bb63f04fc0b065cb615b6ca1ef95eb6df7a813eb9eb625bc15c6de332c22'], + }), + ('diagram', '1.6.4', { + 'checksums': ['7c2bc5d5d634c3b8ca7fea79fb463e412962d88f47a77a74c811cc62f375ce38'], + }), + ('FME', '1.3.5', { + 'checksums': ['3619d88df2a41ca8819b93bb7dff3b8233f76ff8ab0ca67c664f530f835935e4'], + }), + ('bmp', '0.3', { + 'checksums': ['bdf790249b932e80bc3a188a288fef079d218856cf64ffb88428d915423ea649'], + }), + ('tiff', '0.1-5', { + 'checksums': ['9514e6a9926fcddc29ce1dd12b1072ad8265900373f738de687ef4a1f9124e2b'], + }), + ('readbitmap', '0.1.5', { + 'checksums': ['737d7d585eb33de2c200da64d16781e3c9522400fe2af352e1460c6a402a0291'], + }), + ('imager', '0.41.1', { + 'checksums': 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('ineq', '0.2-13', { + 'checksums': ['e0876403f59a3dfc2ea7ffc0d965416e1ecfdecf154e5856e5f54800b3efda25'], + }), + ('soundecology', '1.3.3', { + 'checksums': ['276164d5eb92c78726c647be16232d2443acbf7061371ddde2672b4fdb7a069a'], + }), + ('memuse', '4.0-0', { + 'checksums': ['fbf8716a1388692ee439f69ac99643fa427eb100027d8911ff0fbfdcb5b6c3bc'], + }), + ('pinfsc50', '1.1.0', { + 'checksums': ['b6b9b6365a3f408533264d7ec820494f57eccaf362553e8478a46a8e5b474aba'], + }), + ('vcfR', '1.8.0', { + 'checksums': ['5ffcf9980c1936b9be41b92d5887c56a7ec6e3cf197e5ef7c78aefa8aba20499'], + }), + ('glmmML', '1.0.3', { + 'checksums': ['93a43621cb533b6f95cdf7c880ec28803b022b2729388f3f4b39ba4c4ee46aeb'], + }), + ('ucminf', '1.1-4', { + 'checksums': ['a2eb382f9b24e949d982e311578518710f8242070b3aa3314a331c1e1e7f6f07'], + }), + ('ordinal', '2018.4-19', { + 'checksums': ['ab7fc4527e22460d74ec1198450222e7c6e9940ca1fd2c5e04a939a925a9d711'], + }), + ('Rtsne', '0.13', { + 'checksums': 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+ }), + ('heatmap3', '1.1.1', { + 'checksums': ['055e30a2fee0e8b6e499cdc5ccb7e37e5615ed3d52cc7058fc5ca5fc808cf393'], + }), + ('GlobalOptions', '0.1.0', { + 'checksums': ['567a0a51f6b7b14127302f00e6e4944befd4964c069f96a9e61256e8c3c79ef2'], + }), + ('circlize', '0.4.4', { + 'checksums': ['9c638b3a2b798fe6f8affa344a81dbd695bed4ebcc661d52f8899488a3aa48d0'], + }), + ('GetoptLong', '0.1.7', { + 'checksums': ['b9a98881db407eae9b711c4fa9170168fd5f3be1f8485cd8f28d0a60ace083ba'], + }), + ('dendextend', '1.8.0', { + 'checksums': ['30b72fbbb63555d65f8991c7347400f4df57a07c1342d00666bc8b21d8b039ee'], + }), + ('RInside', '0.2.14', { + 'checksums': ['8de5340993fe879ca00fa559c5b1b27b408ba78bfc5f67d36d6f0b8d8e8649cf'], + }), + ('limSolve', '1.5.5.3', { + 'checksums': ['2f27c03411e0d771ad50d5412125bf4fa0ba461051610edc77e20d28488e86d2'], + }), + ('dbplyr', '1.2.2', { + 'checksums': ['9d410bb0055fffe10f1f8da55a5b24d98322c7b571d74df61427d5888332bc48'], + }), + ('modelr', '0.1.2', { + 'checksums': ['6a9831c510967551a6064716dfd4db48b59dc056dcf1c7f1d2cce05ef0789027'], + }), + ('debugme', '1.1.0', { + 'checksums': ['4dae0e2450d6689a6eab560e36f8a7c63853abbab64994028220b8fd4b793ab1'], + }), + ('clipr', '0.4.1', { + 'checksums': ['1bebc57ddad830c469415a99b13124aee14b91f4b1701fd20defb04623413d18'], + }), + ('reprex', '0.2.0', { + 'checksums': ['69a3fa8ceabb2fa001d91e03a8a28391d2a1af2c2f9b3de694e08d1f65bf84d0'], + }), + ('selectr', '0.4-1', { + 'checksums': ['8bd42f167629344e485e586f9b05fed342746132489079084d82133d7b3ee2ca'], + }), + ('rvest', '0.3.2', { + 'checksums': ['0d6e8837fb1df79b1c83e7b48d8f1e6245f34a10c4bb6952e7bec7867e4abb12'], + }), + ('tidyverse', '1.2.1', { + 'checksums': ['ad67a27bb4e89417a15338fe1a40251a7b5dedba60e9b72637963d3de574c37b'], + }), + ('R.cache', '0.13.0', { + 'checksums': ['d3d4a99a676734ea53e96747d87857fa69615e59858804e92f8ad9ddcf62c5c1'], + }), + ('R.rsp', '0.42.0', { + 'checksums': ['a02ebd3857849896f30993ed8306c88b03116250261d9d85dcee48103f0498fd'], + }), + ('listenv', '0.7.0', { + 'checksums': ['6126020b111870baea08b36afa82777cd578e88c17db5435cd137f11b3964555'], + }), + ('globals', '0.12.1', { + 'checksums': ['2a72473375bac80a8e882b5e2534f0fc073594a565a09263a1b68396b7edcff9'], + }), + ('future', '1.9.0', { + 'checksums': ['d807c19d85dc47a28dd391eab3d67b8d1b91070ffb26a8b2b987c6c447d0cd14'], + }), + ('gdistance', '1.2-2', { + 'checksums': ['c8c923f02ae4e9ef8376d1b195e0246b6941356c8c790c0a5673c5009eee1753'], + }), + ('vioplot', '0.2', { + 'checksums': ['601f043630999e0498f0fba213d3d3fefd6ff0abf8fdb22119199b3d8d58939b'], + }), + ('emulator', '1.2-17', { + 'checksums': ['28be9a86883e7bc319d78a53efec2e8abe445519774b723466d3aa8f537a1e94'], + }), + ('gmm', '1.6-2', { + 'checksums': ['b12f888276c2d480f17ae2711e4915bb253574e3fc36531349f1c2f2c8ad715d'], + }), + ('tmvtnorm', '1.4-10', { + 'checksums': ['1a9f35e9b4899672e9c0b263affdc322ecb52ec198b2bb015af9d022faad73f0'], + }), + ('IDPmisc', '1.1.17', { + 'checksums': ['18ec9db0aab1de526b8e57ac1f0223811806a814777149b793722b999e6f7c59'], + }), + ('gap', '1.1-22', { + 'checksums': ['71a691aac9ce29bfcf1159eacba1866c8571b781f68fb32a3e52fb8584f03ef7'], + }), + ('qrnn', '2.0.3', { + 'checksums': ['4f10a22d1e064f75dd17f7bceea0c34aeeda3f803c2cb61a328152728c7c8151'], + }), + ('TMB', '1.7.14', { + 'checksums': ['b499644b4bbc89f191101639ff8d9d9ec90b896ca24ca650e6aea36f0928ec2e'], + }), + ('glmmTMB', '0.2.2.0', { + 'checksums': ['c5176f4f00ca4b900f49d3744bbcc6772fc31f431bcbf2431db64a5da99c97b2'], + }), + ('DHARMa', '0.2.0', { + 'checksums': ['3422c9d733e7203d17d88761422e242a72309928bc3b01378810fde7c50f004a'], + }), + ('bridgesampling', '0.4-0', { + 'checksums': ['9577b535535b46022d06a7372ee309e2eb2ef0d045d65e2f3ed507f9b88062bf'], + }), + ('BayesianTools', '0.1.5', { + 'checksums': ['f32548f15fe8c625823eb2098165b680e07704356525e631c7bb129f8297bc0a'], + }), + ('gomms', '1.0', { + 'checksums': ['52828c6fe9b78d66bde5474e45ff153efdb153f2bd9f0e52a20a668e842f2dc5'], + }), + ('feather', '0.3.1', { + 'checksums': ['f1069bf920e9bc3da6bf43542a3a7ccc3142544d759945115ecade69dd5ccde0'], + }), + ('dummies', '1.5.6', { + 'checksums': ['7551bc2df0830b98c53582cac32145d5ce21f5a61d97e2bb69fd848e3323c805'], + }), + ('SimSeq', '1.4.0', { + 'checksums': ['5ab9d4fe2cb1b7634432ff125a9e04d2f574fed06246a93859f8004e10790f19'], + }), + ('uniqueAtomMat', '0.1-3-2', { + 'checksums': ['f7024e73274e1e76a870ce5e26bd58f76e8f6df0aa9775c631b861d83f4f53d7'], + }), + ('PoissonSeq', '1.1.2', { + 'checksums': ['6f3dc30ad22e33e4fcfa37b3427c093d591c02f1b89a014d85e63203f6031dc2'], + }), + ('aod', '1.3', { + 'checksums': ['e377effe345987850ece985eabf79750ca1979d75469d17a323c21515ad1dda8'], + }), + ('cghFLasso', '0.2-1', { + 'checksums': ['6e697959b35a3ceb2baa1542ef81f0335006a5a9c937f0173c6483979cb4302c'], + }), + ('svd', '0.4.1', { + 'checksums': ['6f585cb622cc52e2b7f3efddb7a363e91771bff80b8facb554755c2b33b7f402'], + }), + ('Rssa', '1.0', { + 'checksums': ['9cc20a7101d8dff4c6cfb789f9bdc14e2b3bb128d7613a67b0f9633cf006902a'], + }), + ('JBTools', '0.7.2.9', { + 'checksums': ['b33cfa17339df7113176ad1832cbb0533acf5d25c36b95e888f561d586c5d62f'], + }), + ('RUnit', '0.4.32', { + 'checksums': ['23a393059989000734898685d0d5509ece219879713eb09083f7707f167f81f1'], + }), + ('DistributionUtils', '0.5-1', { + 'checksums': ['e92a29003d5e5974f53e40bdb8417e2bdabe784304e21360d7a1cbec7818853f'], + }), + ('gapfill', '0.9.6', { + 'checksums': ['850d0be9d05e3f3620f0f5143496321f1004ed966299bffd6a67a9abd8d9040d'], + }), + ('gee', '4.13-19', { + 'checksums': ['ebd3eb754b338dc8d89a35fff149af57c1be3aa2eb6162912c7cc52a8572c292'], + }), + ('Matching', '4.9-3', { + 'checksums': ['1fbf346d75a079f5b23137dd7bc112207db8d64adfd197826ae6b5748600bc02'], + }), + ('MatchIt', '3.0.2', { + 'checksums': ['782b159a2b5172e758e3993177930d604140ae668fd8a7c98c30792df80de9de'], + }), + ('RItools', '0.1-16', { + 'checksums': ['749fd32e93826ed047ba080542cdde8178d3f8cf4ae12b34890c597de97f4567'], + }), + ('optmatch', '0.9-10', { + 'checksums': ['e1fcc23ab969a4018ef33ca22a210c14f8ca81840bee8e5e2e1c3179729adbca'], + }), + ('SKAT', '1.3.2.1', { + 'checksums': ['7442408ccd1b9d2abb3f3dbd27e1b46e50b87042195bc46ce25fe0d887f98e7a'], + }), + ('GillespieSSA', '0.5-4', { + 'checksums': ['d88c09e598cabfa3bcb28c12e0809439b8ea9a439292f4c8d9d9a7bad133412f'], + }), + ('startupmsg', '0.9.5', { + 'checksums': ['102ad504bc3e7d1927f99c82587c4cefb68d8f6002b70e013b44e15352f6c7b6'], + }), + ('distr', '2.7.0', { + 'checksums': ['90d7d58843092a8c968e8fcb93a87ddc54f3e35696b21826320322598317027d'], + }), + ('distrEx', '2.7.0', { + 'checksums': ['eda1f11afa07fa7e88fded42702eb24db802fe48df4d168ce8c86fde5d3a0e56'], + }), + ('KODAMA', '1.4', { + 'checksums': ['126bc85c5fe08c06fe1d4dda230da2d7574d57bda3b8fa36b2a87d498d7cf763'], + }), + ('locfdr', '1.1-8', { + 'checksums': ['42d6e12593ae6d541e6813a140b92591dabeb1df94432a515507fc2eee9a54b9'], + }), + ('ica', '1.0-2', { + 'checksums': ['e721596fc6175d3270a60d5e0b5b98be103a8fd0dd93ef16680af21fe0b54179'], + }), + ('dtw', '1.20-1', { + 'checksums': ['43ca1a47a7c81a2b5d5054da1be8b8af79a85d6f9ce7b4512e9ed91f790f60f0'], + }), + ('SDMTools', '1.1-221', { + 'checksums': ['a6da297a670f756ee964ffd99c3b212c55c297d385583fd0e767435dd5cd4ccd'], + }), + ('later', '0.7.4', { + 'checksums': ['c4d49aa91f5154ef54ea0498b17f230b8bf99da62541b64417e0c8971261bf88'], + }), + ('promises', '1.0.1', { + 'checksums': ['c2dbc7734adf009377a41e570dfe0d82afb91335c9d0ca1ef464b9bdcca65558'], + }), + ('ggridges', '0.5.0', { + 'checksums': ['124bc84044e56728fa965682f8232fc868f2af7d3eb7276f6b0df53be8d2dbfe'], + }), + ('bibtex', '0.4.2', { + 'checksums': ['1f06ab3660c940405230ad16ff6e4ba38d4418a59cd9b16d78a4349f8b488372'], + }), + ('gbRd', '0.4-11', { + 'checksums': ['0251f6dd6ca987a74acc4765838b858f1edb08b71dbad9e563669b58783ea91b'], + }), + ('Rdpack', '0.9-0', { + 'checksums': ['2bb4f64c416f89166d3d2433257da2dbf981a8550d956ed99f10a83f0d07fc18'], + }), + ('metap', '1.0', { + 'checksums': ['50a014cd52c30d55cf219cc37864323c4d1b44c3c26ff948b10e4dff1dde3fa3'], + }), + ('lsei', '1.2-0', { + 'checksums': ['4781ebd9ef93880260d5d5f23066580ac06061e95c1048fb25e4e838963380f6'], + }), + ('npsurv', '0.4-0', { + 'checksums': ['404cf7135dc40a04e9b81224a543307057a8278e11109ba1fcaa28e87c6204f3'], + }), + ('fitdistrplus', '1.0-11', { + 'checksums': ['861b986529d21a1c5de3e7e22848167704848f60b3f31770827fc8e2c79b0c8a'], + }), + ('reticulate', '1.10', { + 'checksums': ['58e36d3b8a67d01194c4e5099499657d017f77fc2081213633964b1d57a7e32f'], + }), + ('hdf5r', '1.0.0', { + 'patches': ['hdf5r-1.0.0_fix-HDF5-1.10.2.patch'], + 'preinstallopts': "unset LIBS && ", + 'checksums': [ + '6a5fb0c4ac7129405e993ce461db908d51bc0ea2b717e8ca306c26902423d7e8', # hdf5r_1.0.0.tar.gz + 'a01ffc5aa37dc3df375638c78ac02bb7e518eb0e41447a25e77a6da6f4e92608', # hdf5r-1.0.0_fix-HDF5-1.10.2.patch + ], + }), + ('DTRreg', '1.3', { + 'checksums': ['835df542d0ec55368834bc4173dc4aa90f1c0ff146ab243d6e377bba309b8484'], + }), + ('pulsar', '0.3.4', { + 'checksums': ['d7230b2286d0fbfa59bbd4f7314ee6e7b77f929f41a8b42bd95af0a7e354cb1c'], + }), + ('bayesm', '3.1-0.1', { + 'checksums': ['5879823b7fb6e6df0c0fe98faabc1044a4149bb65989062df4ade64e19d26411'], + }), + ('energy', '1.7-5', { + 'checksums': ['24c2cf080939f8f56cd9cda06d2dfc30d0389cd3ec7250af4f9a09a4c06b6996'], + }), + ('compositions', '1.40-2', { + 'checksums': ['110d71ae000561987cb73fc76cd953bd69d37562cb401ed3c36dca137d01b78a'], + }), + ('tweenr', '0.1.5', { + 'checksums': ['d8b6f85459796319b8bf0cb71478a17b5d3a0ace580ba3c8ebbb4a4a3bdc001a'], + }), + ('units', '0.6-1', { + 'checksums': ['f180c56241c2b6dc6406eabf983a2bcb6e88db7936ad599bbd75bf845aa04e3d'], + }), + ('ggforce', '0.1.3', { + 'checksums': ['c4ea83a674793836eac876f8cfdf363ea677d9a947b4461226883a6d7cedcd73'], + }), + ('ggrepel', '0.8.0', { + 'checksums': ['6386606e716d326354a29fcb6cd09f9b3d3b5e7c5ba0d5f7ff35416b1a4177d4'], + }), + ('ggraph', '1.0.2', { + 'checksums': ['4c24739ecabfc65c290a11980491a20bdaac675392a98dc30ccde76ac4b8f53a'], + }), + ('tidygraph', '1.1.0', { + 'checksums': ['6419cfdfb7a160e8f032c62cd68ab12dbd870994a53a182443baa878438c15b3'], + }), + ('clustree', '0.2.2', { + 'checksums': ['10242fbfd607e08c0eba52642a9a49dbfef461cc6f4a2ac999c66400c481c492'], + }), + ('plotly', '4.8.0', { + 'checksums': ['78f90282c831bbbb675ed4811fb506a98dd05e37251fabd42ebc263c80bae8a6'], + }), + ('tweedie', '2.3.2', { + 'checksums': ['9a6226e64e3d56eb7eb2a408f8b825c2ad6ee0ea203a9220e85e7789514adb81'], + }), + ('RcppGSL', '0.3.6', { + 'checksums': ['35e8a8e3c0837df58b7f710d7b4c38a9b63d2522cb3e35ca6a499c30f055ed9a'], + }), + ('mvabund', '3.13.1', { + 'checksums': ['d2b21443a7a791f25340c9c7cad6439b1a9cc5154ca7387be00722b67e920bfd'], + }), + ('fishMod', '0.29', { + 'checksums': ['5989e49ca6d6b2c5d514655e61f75b019528a8c975f0d6056143f17dc4277a5d'], + }), + ('gllvm', '1.0', { + 'checksums': ['072c2c581dedd29e76e5e4c1363f9f840a302592a3b091d7ba82be67c9e61dae'], + }), + ('grpreg', '3.2-0', { + 'checksums': ['15ad18d851305c85ad9015fb93f132c10d2e0fb26886afdcf942e053616d734b'], + }), + ('trust', '0.1-7', { + 'checksums': ['e3d15aa84a71becd2824253d4a8156bdf1ab9ac3b72ced0cd53f3bb370ac6f04'], + }), + ('ergm', '3.9.4', { + 'checksums': ['548d783b8f752984436b8ebf7fd828e1afb3d3e6642bcdd2d4209a6b8c82bd2e'], + }), + ('networkDynamic', '0.9.0', { + 'checksums': ['e951d4bc892f96d867a8f5822d662633f9206f2dadf46caaa6083fc0d97289a4'], + }), + ('tergm', '3.5.2', { + 'checksums': ['65b4f80799342a596ea5b14371f3982f1b611faa02ecabbfd5c79a9b4a66f85c'], + }), + ('ergm.count', '3.3.0', { + 'checksums': ['e14b4c973d3bde3adc15ebbda5443866678f3919bf5e942bf7a8b6bcd4ea93a0'], + }), + ('tsna', '0.2.0', { + 'checksums': ['a26b0564490e78cdb55bc4ad36fda6e7cedc0bb6b21d278513dbe620bf0c0027'], + }), + ('statnet', '2018.10', { + 'checksums': ['387ae8294b6d41d747a62d726a21e10a70ad2a9e612c311658e97f6ce54214ec'], + }), + ('aggregation', '1.0.1', { + 'checksums': ['86f88a02479ddc8506bafb154117ebc3b1a4a44fa308e0193c8c315109302f49'], + }), + ('NMF', '0.21.0', { + 'checksums': ['3b30c81c66066fab4a63c5611a0313418b840d8b63414db31ef0e932872d02e3'], + }), + ('ComICS', '1.0.4', { + 'checksums': ['0af7901215876f95f309d7da6e633c38e4d7faf04112dd6fd343bc15fc593a2f'], + }), + ('dtangle', '0.3.1', { + 'checksums': ['86c8c16411e4e20396fc0287a72dfe45499be4c81d28c972cda0a0fe12d16d4f'], + }), + ('mcmc', '0.9-5', { + 'checksums': ['c676ae0006a52fb527e9dbd3af0684943c3af157d34aaf5b89705d042f5479c4'], + }), + ('MCMCpack', '1.4-4', { + 'checksums': ['97e193d628f7161e59288ed594a313af3a520bf30d5a95f1ede0cb2a567cf9f7'], + }), + ('shinythemes', '1.1.2', { + 'checksums': ['2e13d4d5317fc61082e8f3128b15e0b10ed9736ce81e152dd7ae7f6109f9b18a'], + }), + ('csSAM', '1.2.4', { + 'checksums': ['3d6442ad8c41fa84633cbbc275cd67e88490a160927a5c55d29da55a36e148d7'], + }), + ('bridgedist', '0.1.0', { + 'checksums': ['dc7c1c8874d6cfa34d550d9af194389e13471dfbc55049a1ab66db112fbf1343'], + }), + # qualimap dependencies + ('Biobase', '2.42.0'), + ('NOISeq', '2.26.1'), +] + +moduleclass = 'lang' diff --git a/r/R/R-3.5.3-intel-2017a.old b/r/R/R-3.5.3-intel-2017a.old new file mode 100644 index 00000000..ddd36ce6 --- /dev/null +++ b/r/R/R-3.5.3-intel-2017a.old @@ -0,0 +1,540 @@ +# IT4Innovations 2019 + +name = 'R' +version = '3.5.3' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=yes --enable-R-shlib" +# Actually use Tcl/Tk +configopts += ' --with-tcl-config=$EBROOTTCL/lib/tclConfig.sh --with-tk-config=$EBROOTTK/lib/tkConfig.sh ' +# Enable graphics capabilities for plotting. +configopts += " --with-cairo --with-libpng --with-jpeglib --with-libtiff" +# some recommended packages may fail in a parallel build (e.g. Matrix), +# and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('cairo', '1.14.8', '', True), + ('libreadline', '7.0', '', True), + ('ncurses', '6.0', '', True), + ('bzip2', '1.0.6', '', True), + ('XZ', '5.2.3', '', True), + ('zlib', '1.2.11', '', True), + ('SQLite', '3.17.0', '', True), + ('PCRE', '8.40', '', True), + ('libpng', '1.6.29', '', True), # for plotting in R + ('libjpeg-turbo', '1.5.1', '', True), # for plottting in R + ('LibTIFF', '4.0.7', '', True), + # Java bindings are built if Java is found, might as well provide it + ('Java', '1.8.0_144', '', True), + ('Tcl', '8.6.6', '', True), # for tcltk + ('Tk', '8.6.6', '', True), # for tcltk + ('cURL', '7.53.1', '', True), # for RCurl + ('libxml2', '2.9.4', '', True), # for XML + ('GDAL', '2.1.3', '-Python-2.7.13', True), # for rgdal + ('PROJ', '4.9.3'), # for rgdal + ('GMP', '6.1.2', '', True), # for igraph + ('NLopt', '2.4.2'), # for nloptr + ('FFTW', '3.3.6'), # for fftw + ('libsndfile', '1.0.28'), # for seewave + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.2h'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + # package archive + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', + 'http://cran.r-project.org/src/contrib/', # current version of packages + # mirror alternative for current packages + 'http://cran.freestatistics.org/src/contrib', + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/' + ], + 'source_tmpl': name_tmpl, +} + +# !! order of packages is important !! +# packages updated on May 11th 2017 +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'splines', + 'stats', + 'stats4', + 'tools', + 'utils', + # non-standard libraries, should be specified with fixed versions! + ('Rmpi', '0.6-6', ext_options), + ('abind', '1.4-5', ext_options), + ('magic', '1.5-6', ext_options), + ('geometry', '0.3-6', dict(ext_options.items() + + [('patches', ['geometry-0.3-4-icc.patch'])])), + ('bit', '1.1-12', ext_options), + ('filehash', '2.4-1', ext_options), + ('ff', '2.2-13', ext_options), + ('bnlearn', '4.1.1', ext_options), + ('bootstrap', '2017.2', ext_options), + ('combinat', '0.0-8', ext_options), + ('deal', '1.2-37', ext_options), + ('fdrtool', '1.2.15', ext_options), + ('formatR', '1.5', ext_options), + ('gtools', '3.5.0', ext_options), + ('gdata', '2.17.0', ext_options), + ('GSA', '1.03', ext_options), + ('highr', '0.6', ext_options), + ('infotheo', '1.2.0', ext_options), + ('lars', '1.2', ext_options), + ('lazy', '1.2-15', ext_options), + ('kernlab', '0.9-25', ext_options), + ('mime', '0.5', ext_options), + ('markdown', '0.8', ext_options), + ('mlbench', '2.1-1', ext_options), + ('NLP', '0.1-10', ext_options), + ('mclust', '5.3', ext_options), + ('RANN', '2.5', ext_options), + ('rmeta', '2.16', ext_options), + ('segmented', '0.5-1.4', ext_options), + ('som', '0.3-5.1', ext_options), + ('SuppDists', '1.1-9.4', ext_options), + ('stabledist', '0.7-1', ext_options), + ('survivalROC', '1.0.3', ext_options), + ('pspline', '1.0-17', ext_options), + ('timeDate', '3012.100', ext_options), + ('longmemo', '1.0-0', ext_options), + ('ADGofTest', '0.3', ext_options), + ('ade4', '1.7-6', ext_options), + ('AlgDesign', '1.1-7.3', ext_options), + ('base64enc', '0.1-3', ext_options), + ('BH', '1.62.0-1', ext_options), + ('brew', '1.0-6', ext_options), + ('Brobdingnag', '1.2-4', ext_options), + ('corpcor', '1.6.9', ext_options), + ('longitudinal', '1.1.12', ext_options), + ('backports', '1.0.5', ext_options), + ('checkmate', '1.8.2', ext_options), + ('Rcpp', '0.12.10', ext_options), + ('cubature', '1.3-8', ext_options), + ('DEoptimR', '1.0-8', ext_options), + ('digest', '0.6.12', ext_options), + ('fastmatch', '1.1-0', ext_options), + ('ffbase', '0.12.3', ext_options), + ('iterators', '1.0.8', ext_options), + ('maps', '3.1.1', ext_options), + ('nnls', '1.4', ext_options), + ('sendmailR', '1.2-1', ext_options), + ('spam', '1.4-0', ext_options), + ('subplex', '1.2-2', ext_options), + ('stringi', '1.1.5', ext_options), + ('magrittr', '1.5', ext_options), + ('stringr', '1.2.0', ext_options), + ('evaluate', '0.10', ext_options), + ('logspline', '2.1.9', ext_options), + ('ncbit', '2013.03.29', ext_options), + ('permute', '0.9-4', ext_options), + ('plotrix', '3.6-5', ext_options), + ('randomForest', '4.6-12', ext_options), + ('scatterplot3d', '0.3-40', ext_options), + ('SparseM', '1.77', ext_options), + ('tripack', '1.3-8', ext_options), + ('irace', '2.3', ext_options), + ('rJava', '0.9-8', ext_options), + ('lattice', '0.20-35', ext_options), + ('RColorBrewer', '1.1-2', ext_options), + ('latticeExtra', '0.6-28', ext_options), + ('Matrix', '1.2-10', ext_options), + ('png', '0.1-7', ext_options), + ('RcppArmadillo', '0.7.800.2.0', ext_options), + ('plyr', '1.8.4', ext_options), + ('pROC', '1.9.1', ext_options), + ('quadprog', '1.5-5', ext_options), + ('BB', '2014.10-1', ext_options), + ('BBmisc', '1.11', ext_options), + ('fail', '1.3', ext_options), + ('rlecuyer', '0.3-4', ext_options), + ('snow', '0.4-2', ext_options), + ('MASS', '7.3-47', ext_options), + ('tree', '1.0-37', ext_options), + ('pls', '2.6-0', ext_options), + ('class', '7.3-14', ext_options), + ('e1071', '1.6-8', ext_options), + ('nnet', '7.3-12', ext_options), + ('nlme', '3.1-131', ext_options), + ('minqa', '1.2.4', ext_options), + ('RcppEigen', '0.3.3.3.0', ext_options), + ('MatrixModels', '0.4-1', ext_options), + ('quantreg', '5.33', ext_options), + ('mgcv', '1.8-17', ext_options), + ('colorspace', '1.3-2', ext_options), + ('robustbase', '0.92-7', ext_options), + ('sp', '1.2-4', ext_options), + ('zoo', '1.8-0', ext_options), + ('lmtest', '0.9-35', ext_options), + ('vcd', '1.4-3', ext_options), + ('snowfall', '1.84-6.1', ext_options), + ('rpart', '4.1-11', ext_options), + ('survival', '2.41-3', ext_options), + ('mice', '2.30', ext_options), + ('urca', '1.3-0', ext_options), + ('fracdiff', '1.4-2', ext_options), + ('logistf', '1.22', ext_options), + ('akima', '0.6-2', ext_options), + ('bitops', '1.0-6', ext_options), + ('boot', '1.3-19', ext_options), + ('mixtools', '1.1.0', ext_options), + ('cluster', '2.0.6', ext_options), + ('gclus', '1.3.1', ext_options), + ('coda', '0.19-1', ext_options), + ('codetools', '0.2-15', ext_options), + ('foreach', '1.4.3', ext_options), + ('doMC', '1.3.4', ext_options), + ('DBI', '0.6-1', ext_options), + ('foreign', '0.8-68', ext_options), + ('gam', '1.14-4', ext_options), + ('gamlss.data', '5.0-0', ext_options), + ('gamlss.dist', '5.0-0', ext_options), + ('hwriter', '1.3.2', ext_options), + ('KernSmooth', '2.23-15', ext_options), + ('xts', '0.9-7', ext_options), + ('TTR', '0.23-1', ext_options), + ('quantmod', '0.4-8', ext_options), + ('mnormt', '1.5-5', ext_options), + ('mvtnorm', '1.0-6', ext_options), + ('pcaPP', '1.9-61', ext_options), + ('numDeriv', '2016.8-1', ext_options), + ('lava', '1.5', ext_options), + ('prodlim', '1.6.1', ext_options), + ('pscl', '1.4.9', ext_options), + ('memoise', '1.1.0', ext_options), + ('plogr', '0.1-1', ext_options), + ('RSQLite', '1.1-2', ext_options), + ('BatchJobs', '1.6', ext_options), + ('sandwich', '2.3-4', ext_options), + ('sfsmisc', '1.1-0', ext_options), + ('spatial', '7.3-11', ext_options), + ('VGAM', '1.0-3', ext_options), + ('waveslim', '1.7.5', ext_options), + ('xtable', '1.8-2', ext_options), + ('profileModel', '0.5-9', ext_options), + ('brglm', '0.5-9', ext_options), + ('deSolve', '1.14', ext_options), + ('tseriesChaos', '0.1-13', ext_options), + ('tseries', '0.10-40', ext_options), + ('fastICA', '1.2-0', ext_options), + ('R.methodsS3', '1.7.1', ext_options), + ('R.oo', '1.21.0', ext_options), + ('cgdsr', '1.2.6', ext_options), + ('R.utils', '2.5.0', ext_options), + ('R.matlab', '3.6.1', ext_options), + ('gbm', '2.1.3', ext_options), + ('dichromat', '2.0-0', ext_options), + ('Formula', '1.2-1', ext_options), + ('acepack', '1.4.1', ext_options), + ('reshape2', '1.4.2', ext_options), + ('gtable', '0.2.0', ext_options), + ('munsell', '0.4.3', ext_options), + ('labeling', '0.3', ext_options), + ('scales', '0.4.1', ext_options), + ('proto', '1.0.0', ext_options), + ('lazyeval', '0.2.0', ext_options), + ('assertthat', '0.2.0', ext_options), + ('tibble', '1.3.0', ext_options), + ('ggplot2', '2.2.1', ext_options), + ('gridExtra', '2.2.1', ext_options), + ('chron', '2.3-50', ext_options), + ('data.table', '1.10.4', ext_options), + ('viridisLite', '0.2.0', ext_options), + ('viridis', '0.4.0', ext_options), + ('yaml', '2.1.14', ext_options), + ('jsonlite', '1.4', ext_options), + ('htmltools', '0.3.6', ext_options), + ('htmlwidgets', '0.8', ext_options), + ('knitr', '1.16', ext_options), + ('htmlTable', '1.9', ext_options), + ('Hmisc', '4.0-3', ext_options), + ('fastcluster', '1.1.22', ext_options), + ('registry', '0.3', ext_options), + ('pkgmaker', '0.22', ext_options), + ('rngtools', '1.2.4', ext_options), + ('doParallel', '1.0.10', ext_options), + ('gridBase', '0.4-7', ext_options), + ('NMF', '0.20.6', ext_options), + ('irlba', '2.1.2', ext_options), + ('igraph', '1.0.1', ext_options), + ('GeneNet', '1.2.13', ext_options), + ('ape', '4.1', ext_options), + ('RJSONIO', '1.3-0', ext_options), + ('caTools', '1.17.1', ext_options), + ('gplots', '3.0.1', ext_options), + ('ROCR', '1.0-7', ext_options), + ('httpuv', '1.3.3', ext_options), + ('R6', '2.2.1', ext_options), + ('rjson', '0.2.15', ext_options), + ('sourcetools', '0.1.6', ext_options), + ('shiny', '1.0.3', ext_options), + ('seqinr', '3.3-6', ext_options), + ('LearnBayes', '2.15', ext_options), + ('deldir', '0.1-14', ext_options), + ('gmodels', '2.16.2', ext_options), + ('expm', '0.999-2', ext_options), + ('spdep', '0.6-13', ext_options), + ('dplyr', '0.5.0', ext_options), + ('vegan', '2.4-3', ext_options), + ('adegenet', '2.0.1', ext_options), + ('prettyunits', '1.0.2', ext_options), + ('progress', '1.1.2', ext_options), + ('rncl', '0.8.2', ext_options), + ('XML', '3.98-1.7', ext_options), + ('crayon', '1.3.2', ext_options), + ('praise', '1.0.0', ext_options), + ('testthat', '1.0.2', ext_options), + ('rprojroot', '1.2', ext_options), + ('rmarkdown', '1.5', ext_options), + ('curl', '2.6', ext_options), + ('openssl', '0.9.6', ext_options), + ('httr', '1.2.1', ext_options), + ('reshape', '0.8.6', ext_options), + ('xml2', '1.1.1', ext_options), + ('bold', '0.4.0', ext_options), + ('triebeard', '0.3.0', ext_options), + ('urltools', '1.6.0', ext_options), + ('httpcode', '0.2.0', ext_options), + ('crul', '0.3.6', ext_options), + ('rredlist', '0.3.0', ext_options), + ('rentrez', '1.0.4', ext_options), + ('rotl', '3.0.3', ext_options), + ('solrium', '0.4.0', ext_options), + ('ritis', '0.5.4', ext_options), + ('worrms', '0.1.0', ext_options), + ('natserv', '0.1.4', ext_options), + ('taxize', '0.8.4', ext_options), + ('tidyr', '0.6.2', ext_options), + ('uuid', '0.1-2', ext_options), + ('RNeXML', '2.0.7', ext_options), + ('phylobase', '0.8.4', ext_options), + ('adephylo', '1.1-10', ext_options), + ('animation', '2.5', ext_options), + ('bigmemory.sri', '0.1.3', ext_options), + ('bigmemory', '4.5.19', dict(ext_options.items() + \ + [('patches', ['bigmemory-4.5.19_icpc-wd308.patch'])])), + ('calibrate', '1.7.2', ext_options), + ('clusterGeneration', '1.3.4', ext_options), + ('raster', '2.5-8', ext_options), + ('dismo', '1.1-4', ext_options), + ('extrafontdb', '1.0', ext_options), + ('Rttf2pt1', '1.3.4', ext_options), + ('extrafont', '0.17', ext_options), + ('fields', '8.10', ext_options), + ('shapefiles', '0.7', ext_options), + ('fossil', '0.3.7', ext_options), + ('geiger', '2.0.6', ext_options), + ('glmnet', '2.0-10', ext_options), + ('rgl', '0.98.1', ext_options), + ('labdsv', '1.8-0', ext_options), + ('stabs', '0.6-2', ext_options), + ('modeltools', '0.2-21', ext_options), + ('strucchange', '1.5-1', ext_options), + ('TH.data', '1.0-8', ext_options), + ('multcomp', '1.4-6', ext_options), + ('coin', '1.1-3', ext_options), + ('party', '1.2-3', ext_options), + ('mboost', '2.8-0', ext_options), + ('msm', '1.6.4', ext_options), + ('nor1mix', '1.2-2', ext_options), + ('np', '0.60-3', ext_options), + ('polynom', '1.3-9', ext_options), + ('polspline', '1.1.12', ext_options), + ('rms', '5.1-1', ext_options), + ('RWekajars', '3.9.1-3', ext_options), + ('RWeka', '0.4-34', ext_options), + ('slam', '0.1-40', ext_options), + ('tm', '0.7-1', ext_options), + ('TraMineR', '2.0-5', ext_options), + ('chemometrics', '1.4.2', ext_options), + ('FNN', '1.1', ext_options), + ('ipred', '0.9-6', ext_options), + ('statmod', '1.4.29', ext_options), + ('miscTools', '0.6-22', ext_options), + ('maxLik', '1.3-4', ext_options), + ('mlogit', '0.2-4', ext_options), + ('getopt', '1.20.0', ext_options), + ('gsalib', '2.1', ext_options), + ('optparse', '1.3.2', ext_options), + ('klaR', '0.6-12', ext_options), + ('neuRosim', '0.2-12', ext_options), + ('locfit', '1.5-9.1', ext_options), + ('GGally', '1.3.0', ext_options), + ('beanplot', '1.2', ext_options), + ('clValid', '0.6-6', ext_options), + ('matrixStats', '0.52.2', ext_options), + ('DiscriMiner', '0.1-29', ext_options), + ('ellipse', '0.3-8', ext_options), + ('leaps', '3.0', ext_options), + ('nloptr', '1.0.4', ext_options), + ('lme4', '1.1-13', ext_options), + ('pbkrtest', '0.4-7', ext_options), + ('car', '2.1-4', ext_options), + ('flashClust', '1.01-2', ext_options), + ('FactoMineR', '1.35', ext_options), + ('flexclust', '1.3-4', ext_options), + ('flexmix', '2.3-14', ext_options), + ('prabclus', '2.2-6', ext_options), + ('diptest', '0.75-7', ext_options), + ('trimcluster', '0.1-2', ext_options), + ('fpc', '2.1-10', ext_options), + ('BiasedUrn', '1.07', ext_options), + ('TeachingDemos', '2.10', ext_options), + ('kohonen', '3.0.2', dict(ext_options.items() + \ + [('patches', ['kohonen-3.0.2_icpc-wd308.patch'])])), + ('base64', '2.0', ext_options), + ('doRNG', '1.6.6', ext_options), + ('nleqslv', '3.2', ext_options), + ('Deriv', '3.8.0', ext_options), + ('RGCCA', '2.1.2', ext_options), + ('pheatmap', '1.0.8', ext_options), + ('openxlsx', '4.0.17', ext_options), + ('pvclust', '2.0-0', ext_options), + ('RCircos', '1.2.0', ext_options), + ('lambda.r', '1.1.9', ext_options), + ('futile.options', '1.0.0', ext_options), + ('futile.logger', '1.4.3', ext_options), + ('VennDiagram', '1.6.17', ext_options), + ('xlsxjars', '0.6.1', ext_options), + ('xlsx', '0.5.7', ext_options), + ('forecast', '8.0', dict(ext_options.items() + \ + [('patches', ['forecast-6.1_icpc-wd308.patch'])])), + ('fma', '2.3', ext_options), + ('expsmooth', '2.3', ext_options), + ('fpp', '0.5', ext_options), + ('maptools', '0.9-2', ext_options), + ('tensor', '1.5', ext_options), + ('polyclip', '1.6-1', ext_options), + ('goftest', '1.1-1', ext_options), + ('spatstat.utils', '1.6-0', ext_options), + ('spatstat', '1.51-0', ext_options), + ('rgdal', '1.2-7', ext_options), + ('gdalUtils', '2.0.1.7', ext_options), + ('pracma', '2.0.4', ext_options), + ('RCurl', '1.95-4.8', ext_options), + ('bio3d', '2.3-1', ext_options), + ('AUC', '0.3.0', ext_options), + ('interpretR', '0.2.4', ext_options), + ('cvAUC', '1.1.0', ext_options), + ('SuperLearner', '2.0-21', ext_options), + ('lpSolve', '5.6.13', ext_options), + ('mediation', '4.4.5', ext_options), + ('ModelMetrics', '1.1.0', ext_options), + ('caret', '6.0-76', ext_options), + ('adabag', '4.1', ext_options), + ('parallelMap', '1.3', ext_options), + ('ParamHelpers', '1.10', ext_options), + ('ggvis', '0.4.3', ext_options), + ('mlr', '2.11', ext_options), + ('unbalanced', '2.0', ext_options), + ('RSNNS', '0.4-9', ext_options), + ('abc.data', '1.0', ext_options), + ('abc', '2.1', ext_options), + ('lhs', '0.14', ext_options), + ('tensorA', '0.36', ext_options), + ('EasyABC', '1.5', ext_options), + ('shape', '1.4.2', ext_options), + ('whisker', '0.3-2', ext_options), + ('rstudioapi', '0.6', ext_options), + ('commonmark', '1.2', ext_options), + ('desc', '1.1.0', ext_options), + ('roxygen2', '6.0.1', ext_options), + ('git2r', '0.18.0', ext_options), + ('rversions', '1.0.3', ext_options), + ('withr', '1.0.2', ext_options), + ('devtools', '1.13.0', ext_options), + ('Rook', '1.1-1', ext_options), + ('Cairo', '1.5-9', dict(ext_options.items() + + [('patches', ['Cairo-1.5-9.patch'])])), + ('RMTstat', '0.3', ext_options), + ('Lmoments', '1.2-3', ext_options), + ('distillery', '1.0-2', ext_options), + ('extRemes', '2.0-8', ext_options), + ('pixmap', '0.4-11', ext_options), + ('tkrplot', '0.0-23', ext_options), + ('misc3d', '0.8-4', ext_options), + ('multicool', '0.1-10', dict(ext_options.items() + \ + [('patches', ['multicool-0.1-10_icpc-wd308.patch'])])), + ('ks', '1.10.6', ext_options), + ('logcondens', '2.1.5', ext_options), + ('Iso', '0.0-17', ext_options), + ('penalized', '0.9-50', ext_options), + ('clusterRepro', '0.5-1.1', ext_options), + ('randomForestSRC', '2.4.2', ext_options), + ('sm', '2.2-5.4', ext_options), + ('psych', '1.7.5', ext_options), + ('pbivnorm', '0.6.0', ext_options), + ('lavaan', '0.5-23.1097', ext_options), + ('matrixcalc', '1.0-3', ext_options), + ('arm', '1.9-3', ext_options), + ('mi', '1.0', ext_options), + ('visNetwork', '1.0.3', ext_options), + ('rgexf', '0.15.3', ext_options), + ('influenceR', '0.1.0', ext_options), + ('DiagrammeR', '0.9.0', ext_options), + ('sem', '3.1-9', ext_options), + ('jpeg', '0.1-8', ext_options), + ('network', '1.13.0', ext_options), + ('statnet.common', '3.3.0', ext_options), + ('sna', '2.4', ext_options), + ('glasso', '1.8', dict(ext_options.items() + \ + [('patches', [('glasso-1.8-ifort-no-fixed.patch', 1)])])), + ('huge', '1.2.7', ext_options), + ('d3Network', '0.5.2.1', ext_options), + ('ggm', '2.3', ext_options), + ('qgraph', '1.4.3', ext_options), + ('diveRsity', '1.9.90', ext_options), + ('doSNOW', '1.0.14', ext_options), + ('phangorn', '2.2.0', ext_options), + ('geepack', '1.2-1', ext_options), + ('lubridate', '1.6.0', ext_options), + ('biom', '0.3.12', ext_options), + ('pim', '2.0.1', ext_options), + ('minpack.lm', '1.2-1', ext_options), + ('rootSolve', '1.7', ext_options), + ('diagram', '1.6.3', ext_options), + ('FME', '1.3.5', ext_options), + ('bmp', '0.2', ext_options), + ('readbitmap', '0.1-4', ext_options), + ('purrr', '0.2.2', ext_options), + ('downloader', '0.4', ext_options), + ('imager', '0.40.2', dict(ext_options.items() + \ + [('patches', ['imager-0.40.2_icpc-wd308.patch'])])), + ('pracma', '2.0.4', ext_options), + ('signal', '0.7-6', ext_options), + ('tuneR', '1.3.2', ext_options), + ('pastecs', '1.3-18', ext_options), + ('audio', '0.1-5', ext_options), + ('fftw', '1.0-4', ext_options), + ('seewave', '2.0.5', ext_options), + ('gsw', '1.0-3', ext_options), + ('oce', '0.9-21', ext_options), + ('ineq', '0.2-13', ext_options), + ('soundecology', '1.3.2', ext_options), + # ('KFAS', '1.2.9', ext_options), + # qualimap dependencies + ('Biobase', '2.42.0', ext_options), + ('NOISeq', '2.26.1', ext_options), +] + +moduleclass = 'lang' diff --git a/s/SQLite/SQLite-3.27.2.eb b/s/SQLite/SQLite-3.27.2.eb new file mode 100644 index 00000000..d029ee68 --- /dev/null +++ b/s/SQLite/SQLite-3.27.2.eb @@ -0,0 +1,39 @@ +# IT4Innovations 2019 + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.27.2' + +homepage = 'http://www.sqlite.org/' +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://www.sqlite.org/2019/'] +version_minor_etc = version.split('.')[1:] +version_minor_etc += '0' * (3 - len(version_minor_etc)) +version_str = '%(version_major)s' + ''.join('%02d' % int(x) + for x in version_minor_etc) +sources = [ + 'sqlite-autoconf-%s.tar.gz' % version_str, + 'sqlite-amalgamation-%s.zip' % version_str, +] + +dependencies = [ + ('libreadline', '8.0'), + ('Tcl', '8.6.9'), +] + +sanity_check_paths = { + 'files': [ + 'bin/sqlite3', + 'include/sqlite3ext.h', + 'include/sqlite3.h', + 'lib/libsqlite3.a', + 'lib/libsqlite3.%s' % + SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'devel' diff --git a/u/UDUNITS/UDUNITS-2.2.26-intel-2017a.eb b/u/UDUNITS/UDUNITS-2.2.26-intel-2017a.eb new file mode 100644 index 00000000..9dfe4993 --- /dev/null +++ b/u/UDUNITS/UDUNITS-2.2.26-intel-2017a.eb @@ -0,0 +1,39 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html +## + +easyblock = 'ConfigureMake' + +name = 'UDUNITS' +version = '2.2.26' + +homepage = 'http://www.unidata.ucar.edu/software/udunits/' +description = """UDUNITS supports conversion of unit specifications between formatted and binary forms, + arithmetic manipulation of units, and conversion of values between compatible scales of measurement.""" + +toolchain = {'name': 'intel', 'version': '2017a'} +toolchainopts = {'pic': True} + +source_urls = ['https://fossies.org/linux/privat'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['368f4869c9c7d50d2920fa8c58654124e9ed0d8d2a8c714a9d7fdadc08c7356d'] + +dependencies = [('expat', '2.2.6', '', True)] + +sanity_check_paths = { + 'files': ['bin/udunits2', 'include/converter.h', 'include/udunits2.h', 'include/udunits.h', + 'lib/libudunits2.a', 'lib/libudunits2.%s' % SHLIB_EXT], + 'dirs': ['share'], +} + +parallel = 1 + +moduleclass = 'phys' diff --git a/x/XZ/XZ-5.2.4.eb b/x/XZ/XZ-5.2.4.eb new file mode 100644 index 00000000..e75be842 --- /dev/null +++ b/x/XZ/XZ-5.2.4.eb @@ -0,0 +1,32 @@ +# IT4Innovations 2019 + +easyblock = 'ConfigureMake' + +name = 'XZ' +version = '5.2.4' + +homepage = 'http://tukaani.org/xz/' +description = "xz: XZ utilities" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://tukaani.org/xz/'] + +builddependencies = [ + ('Autotools', '20150215'), +] + +dependencies = [ + ('gettext', '0.19.4'), +] + +# may become useful in non-x86 archs +#configopts = ' --disable-assembler ' + +sanity_check_paths = { + 'files': ["bin/xz", "bin/lzmainfo"], + 'dirs': [] +} + +moduleclass = 'tools'