new file: g/GATK/GATK-4.0.2.1-Java-1.8.0_144.eb

g/GATK/GATK-4.0.2.1-Java-1.8.0_144.eb

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+# IT4Innovations 2018
+
+easyblock = 'Tarball'
+
+name = 'GATK'
+version = '4.0.2.1'
+versionsuffix = '-Java-%(javaver)s'
+
+homepage = 'http://www.broadinstitute.org/gatk/'
+description = """The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute
+ to analyse next-generation resequencing data. The toolkit offers a wide variety of tools,
+ with a primary focus on variant discovery and genotyping as well as strong emphasis on
+ data quality assurance. Its robust architecture, powerful processing engine and
+ high-performance computing features make it capable of taking on projects of any size."""
+
+toolchain = {'name': 'dummy', 'version': ''}
+
+# download manually from http://www.broadinstitute.org/gatk/download
+source_urls = [' https://github.com/broadinstitute/gatk/releases/download/%(version)s/']
+
+sources = ['gatk-%(version)s.zip']
+
+dependencies = [('Java', '1.8.0_144')]
+
+#modloadmsg = "To execute GATK run: java -jar $EBROOTGATK/GenomeAnalysisTK.jar\n"
+
+postinstallcmds = [
+    'mkdir %(installdir)s/bin',
+    'mv %(installdir)s/gatk %(installdir)s/bin',
+]
+
+sanity_check_paths = {
+    'files': ['gatk-package-4.0.2.1-local.jar', 'gatk-package-4.0.2.1-spark.jar'],
+    'dirs': ['bin'],
+}
+
+moduleclass = 'bio'