diff --git a/c/Clp/Clp-1.16.10-intel-2017a.eb b/c/Clp/Clp-1.16.10-intel-2017a.eb new file mode 100644 index 00000000..5ac1118f --- /dev/null +++ b/c/Clp/Clp-1.16.10-intel-2017a.eb @@ -0,0 +1,25 @@ +#made by PERMON team + +easyblock = 'ConfigureMake' + +name = 'Clp' +version = '1.16.10' + +homepage = 'https://projects.coin-or.org/Clp' +description = """Clp (COIN-OR linear programming) is an open-source linear programming solver written in C++. It is primarily meant to be used as a callable library, but a basic stand-alone executable version is also available. It is a part of the COIN-OR project (https://www.coin-or.org).""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = ['https://www.coin-or.org/download/source/Clp/'] +sources = [SOURCE_TGZ] + +dependencies = [] + +sanity_check_paths = { + 'files' : ['bin/clp'], + 'dirs' : ['include/coin/','lib/'], +} + +sanity_check_commands = [('clp','-h')] + +moduleclass = 'numlib' diff --git a/l/LIBLINEAR/LIBLINEAR-2.11-intel-2017a.eb b/l/LIBLINEAR/LIBLINEAR-2.11-intel-2017a.eb new file mode 100644 index 00000000..70127e8e --- /dev/null +++ b/l/LIBLINEAR/LIBLINEAR-2.11-intel-2017a.eb @@ -0,0 +1,30 @@ +#made by PERMON team + +easyblock = 'MakeCp' + +name = 'LIBLINEAR' +version = '2.11' + +homepage = 'http://www.csie.ntu.edu.tw/~cjlin/liblinear/' +description = """LIBLINEAR is a simple package for solving large-scale regularized linear +classification and regression. It supports L2-regularized logistic regression, L2-loss support vector classification +L1-loss support vector classification, L1-regularized L2-loss support vector classification, L1-regularized logistic regression +L2-regularized L2-loss support vector regression, L1-loss support vector regression.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [homepage] +sources = [SOURCELOWER_TAR_GZ] + +files_to_copy = [(['train', 'predict'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['train', 'predict']], + 'dirs': [], +} + +modextrapaths = { + 'PATH': ['bin'], +} + +moduleclass = 'numlib' diff --git a/l/LIBSVM/LIBSVM-3.22-intel-2017a.eb b/l/LIBSVM/LIBSVM-3.22-intel-2017a.eb index 051e2f4f..90b64ef9 100644 --- a/l/LIBSVM/LIBSVM-3.22-intel-2017a.eb +++ b/l/LIBSVM/LIBSVM-3.22-intel-2017a.eb @@ -1,3 +1,5 @@ +#adapted by PERMON team + easyblock = 'MakeCp' name = 'LIBSVM' @@ -28,4 +30,4 @@ modextrapaths = { 'PATH': ['bin', 'bin/svm-toy/qt'], } -moduleclass = 'lib' +moduleclass = 'numlib' diff --git a/n/numpy/numpy-1.12.1-intel-2017a-Python-2.7.11.eb b/n/numpy/numpy-1.12.1-intel-2017a-Python-2.7.11.eb new file mode 100644 index 00000000..d058bfae --- /dev/null +++ b/n/numpy/numpy-1.12.1-intel-2017a-Python-2.7.11.eb @@ -0,0 +1,28 @@ +#adapted by PERMON team + +name = 'numpy' +version = '1.12.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.numpy.org' +description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: + a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran + code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, + NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be + defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_ZIP] + +patches = ['numpy-1.12.0-mkl.patch'] + +dependencies = [ + ('Python', '2.7.11'), +] + +# check that numpy is present in python and in proper version +sanity_check_commands = [('python', '-c "import numpy; assert(numpy.__version__ == \'%(version)s\')"')] + +moduleclass = 'math' diff --git a/p/PETSc/PETSc-3.7.5-intel-2017a-it4i.eb b/p/PETSc/PETSc-3.7.5-intel-2017a-it4i.eb new file mode 100644 index 00000000..9a4e201b --- /dev/null +++ b/p/PETSc/PETSc-3.7.5-intel-2017a-it4i.eb @@ -0,0 +1,56 @@ +#made by PERMON team + +# BUILD ON COMPUTE NODE + +easyblock = 'ConfigureMake' +name = 'PETSc' +version = '3.7.5' +versionsuffix = '-it4i' + +homepage = 'http://www.mcs.anl.gov/petsc' +description = """PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the + scalable (parallel) solution of scientific applications modeled by partial differential equations.""" + +toolchain = {'name': 'intel', 'version': '2017a'} + +#build is still parallel, PETSc make doesnt support -j opt +maxparallel = 0 + +source_urls = ['http://ftp.mcs.anl.gov/pub/petsc/release-snapshots'] +sources = [SOURCELOWER_TAR_GZ] + +# (build) dependencies provided through EasyBuild +builddependencies = [('CMake', '3.7.2', '', True)] + +# configure installs dependencies -> remove installdir before configure +keeppreviousinstall = True +preconfigopts = 'rm -rf %(installdir)s;' + +petscArch = 'intel-opt' +petscDir = '%(builddir)s/%(namelower)s-%(version)s' + +# config options +configopts = '--CFLAGS=-O3 -xHost --CXXFLAGS=-O3 -xHost --FFLAGS=-O3 -xHost --with-c++-support --with-pic=1 ' +configopts += '--with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-debugging=0 --with-gnu-compilers=0 ' +configopts += '--with-mpi=1 --with-x=0 ' +configopts += '--download-metis --download-parmetis --download-mumps --download-superlu --download-superlu_dist ' +configopts += '--with-blas-lapack-lib=[$EBROOTIMKL/mkl/lib/intel64_lin/libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a] ' +configopts += '--with-scalapack-include=$EBROOTIMKL/mkl/include ' +configopts += '--with-scalapack-lib=[$EBROOTIMKL/mkl/lib/intel64_lin/libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a] ' +configopts += '--with-scalapack=1 ' +configopts += 'PETSC_ARCH=%s' % petscArch + +installopts = 'PETSC_DIR=%s PETSC_ARCH=%s' % (petscDir,petscArch) +buildopts = installopts + ' all' + +modextravars = {'PETSC_DIR':'%(installdir)s'} + +moduleclass = 'numlib' + +# sanity checks +runtest = 'test' # run make test after make +sanity_check_paths = { + 'files': ['include/petscconf.h', 'lib/libpetsc.so'], + 'dirs': [] +} +sanity_check_commands = [('petscmpiexec','-h')]