deleted: o/OpenMPI/OpenMPI-4.1.5-GCC-12.3.0.eb

new file:   u/UCC/UCC-1.2.0-GCCcore-12.3.0.eb
	new file:   v/VASP/VASP-6.4.3-NVHPC-24.3-CUDA-12.3.0-adjust-makefile.patch
	modified:   v/VASP/VASP-6.4.3-NVHPC-24.3-CUDA-12.3.0.eb
This commit is contained in:
Lukas Krupcik 2024-09-05 07:57:26 +02:00
parent 43a093e684
commit 5bd3d973a4
4 changed files with 112 additions and 90 deletions

View File

@ -1,86 +0,0 @@
# IT4Innovations
# LK 2023
name = 'OpenMPI'
version = '4.1.5'
homepage = 'https://www.open-mpi.org/'
description = """The Open MPI Project is an open source MPI-3 implementation."""
toolchain = {'name': 'GCC', 'version': '12.3.0'}
source_urls = ['https://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads']
sources = [SOURCELOWER_TAR_BZ2]
patches = [
'OpenMPI-4.1.1_build-with-internal-cuda-header.patch',
'OpenMPI-4.1.1_opal-datatype-cuda-performance.patch',
'OpenMPI-4.1.5_fix-pmix3x.patch',
]
checksums = [
{'openmpi-4.1.5.tar.bz2': 'a640986bc257389dd379886fdae6264c8cfa56bc98b71ce3ae3dfbd8ce61dbe3'},
{'OpenMPI-4.1.1_build-with-internal-cuda-header.patch':
'63eac52736bdf7644c480362440a7f1f0ae7c7cae47b7565f5635c41793f8c83'},
{'OpenMPI-4.1.1_opal-datatype-cuda-performance.patch':
'b767c7166cf0b32906132d58de5439c735193c9fd09ec3c5c11db8d5fa68750e'},
{'OpenMPI-4.1.5_fix-pmix3x.patch':
'46edac3dbf32f2a611d45e8a3c8edd3ae2f430eec16a1373b510315272115c40'},
]
builddependencies = [
('pkgconf', '1.9.5'),
('Perl', '5.36.1'),
('Autotools', '20220317'),
]
dependencies = [
('zlib', '1.2.13'),
('hwloc', '2.9.1'),
('libevent', '2.1.12'),
('UCX', '1.14.1'),
('libfabric', '1.18.0'),
('PMIx', '4.2.4'),
('UCC', '1.2.0'),
]
# Update configure to include changes from the "internal-cuda" patch
# by running a subset of autogen.pl sufficient to achieve this
# without doing the full, long-running regeneration.
preconfigopts = ' && '.join([
'cd config',
'autom4te --language=m4sh opal_get_version.m4sh -o opal_get_version.sh',
'cd ..',
'autoconf',
'autoheader',
'aclocal',
'automake',
''
])
# CUDA related patches and custom configure option can be removed if CUDA support isn't wanted.
configopts = '--with-cuda=internal '
configopts += '--enable-shared --enable-mpi-thread-multiple --with-verbs '
configopts += '--enable-mpirun-prefix-by-default '
configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support
configopts += '--with-slurm ' # Enable slurm
configopts += '--enable-mpi-cxx ' # Enable building the C++ MPI bindings
configopts += '--with-ucx=$EBROOTUCX '
import os
if os.environ.get("CLUSTERNAME") in ["BARBORA"]:
modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx5_0',
'OMPI_MCA_btl_tcp_if_include': '10.33.4.0/24',
'OMPI_MCA_orte_base_help_aggregate': '0',
'SLURM_MPI_TYPE': 'pmix_v4',
}
elif os.environ.get("CLUSTERNAME") in ["KAROLINA"]:
modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx5_0',
'OMPI_MCA_orte_base_help_aggregate': '0',
'SLURM_MPI_TYPE': 'pmix_v4',
}
else:
modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx4_0',
'OMPI_MCA_oob_tcp_if_include': '10.0.0.0/8',
'SLURM_MPI_TYPE': 'pmix_v4',
}
moduleclass = 'mpi'

View File

@ -0,0 +1,45 @@
# IT4Innovations
# LK 2024
easyblock = 'ConfigureMake'
name = 'UCC'
version = '1.2.0'
homepage = 'https://www.openucx.org/'
description = """UCC (Unified Collective Communication) is a collective
communication operations API and library that is flexible, complete, and
feature-rich for current and emerging programming models and runtimes.
"""
toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
toolchainopts = {'pic': True}
source_urls = ['https://github.com/openucx/ucc/archive/refs/tags']
sources = ['v%(version)s.tar.gz']
patches = ['UCC-1.1.0-multiple_component_paths.patch']
checksums = [
{'v1.2.0.tar.gz': 'c1552797600835c0cf401b82dc89c4d27d5717f4fb805d41daca8e19f65e509d'},
{'UCC-1.1.0-multiple_component_paths.patch': '3081d0f694331daa4a88a0fa3fb54b9a918015248ae5eb7b3157b924abd31bee'},
]
builddependencies = [
('binutils', '2.40'),
('Autotools', '20220317'),
]
dependencies = [
('UCX', '1.14.1'),
('zstd', '1.5.5'),
]
preconfigopts = "./autogen.sh && "
sanity_check_paths = {
'files': ['bin/ucc_info'],
'dirs': ['include', 'lib']
}
sanity_check_commands = ["ucc_info -c"]
moduleclass = 'lib'

View File

@ -0,0 +1,64 @@
--- /dev/shm/easybuild/build/VASP/6.4.3/NVHPC-24.3-CUDA-12.3.0-CUDA-12.3.0/vasp.6.4.3/arch/makefile.include.nvhpc_acc.orig 2024-09-02 12:36:45.568074002 +0200
+++ /dev/shm/easybuild/build/VASP/6.4.3/NVHPC-24.3-CUDA-12.3.0-CUDA-12.3.0/vasp.6.4.3/arch/makefile.include.nvhpc_acc 2024-09-02 12:39:29.127787237 +0200
@@ -17,8 +17,8 @@
# N.B.: you might need to change the cuda-version here
# to one that comes with your NVIDIA-HPC SDK
CC = mpicc -acc -gpu=cc60,cc70,cc80,cuda11.8
-FC = mpif90 -acc -gpu=cc60,cc70,cc80,cuda11.8
-FCL = mpif90 -acc -gpu=cc60,cc70,cc80,cuda11.8 -c++libs
+FC = mpif90 -acc -gpu=cc60,cc70,cc80,cuda12.3
+FCL = mpif90 -acc -gpu=cc60,cc70,cc80,cuda12.3 -c++libs
FREE = -Mfree
@@ -61,19 +61,19 @@
# Specify your NV HPC-SDK installation (mandatory)
#... first try to set it automatically
-NVROOT =$(shell which nvfortran | awk -F /compilers/bin/nvfortran '{ print $$1 }')
+#NVROOT =$(shell which nvfortran | awk -F /compilers/bin/nvfortran '{ print $$1 }')
# If the above fails, then NVROOT needs to be set manually
-#NVHPC ?= /opt/nvidia/hpc_sdk
-#NVVERSION = 21.11
-#NVROOT = $(NVHPC)/Linux_x86_64/$(NVVERSION)
+NVHPC ?= ${EBROOTNVHPC}
+NVVERSION = ${EBVERSIONNVHPC}
+NVROOT = $(NVHPC)/Linux_x86_64/$(NVVERSION)
## Improves performance when using NV HPC-SDK >=21.11 and CUDA >11.2
-#OFLAG_IN = -fast -Mwarperf
-#SOURCE_IN := nonlr.o
+OFLAG_IN = -fast -Mwarperf
+SOURCE_IN := nonlr.o
# Software emulation of quadruple precsion (mandatory)
-QD ?= $(NVROOT)/compilers/extras/qd
+QD ?= ${EBROOTQD}
LLIBS += -L$(QD)/lib -lqdmod -lqd
INCS += -I$(QD)/include/qd
@@ -89,7 +89,7 @@
LLIBS += $(SCALAPACK) $(LAPACK) $(BLAS)
# FFTW (mandatory)
-FFTW_ROOT ?= /path/to/your/fftw/installation
+FFTW_ROOT ?= ${EBROOTFFTWMPI}
LLIBS += -L$(FFTW_ROOT)/lib -lfftw3
INCS += -I$(FFTW_ROOT)/include
@@ -99,10 +99,10 @@
#LLIBS += -cudalib=cusolvermp,cublasmp -lnvhpcwrapcal
# HDF5-support (optional but strongly recommended)
-#CPP_OPTIONS+= -DVASP_HDF5
-#HDF5_ROOT ?= /path/to/your/hdf5/installation
-#LLIBS += -L$(HDF5_ROOT)/lib -lhdf5_fortran
-#INCS += -I$(HDF5_ROOT)/include
+CPP_OPTIONS+= -DVASP_HDF5
+HDF5_ROOT ?= ${EBROOTHDF5}
+LLIBS += -L$(HDF5_ROOT)/lib -lhdf5_fortran
+INCS += -I$(HDF5_ROOT)/include
# For the VASP-2-Wannier90 interface (optional)
#CPP_OPTIONS += -DVASP2WANNIER90

View File

@ -31,11 +31,10 @@ toolchainopts = {'pic': True}
# Vasp is proprietary software, see http://www.vasp.at/index.php/faqs on # Vasp is proprietary software, see http://www.vasp.at/index.php/faqs on
# how to get access to the code # how to get access to the code
sources = ['%(namelower)s.%(version)s.tgz'] sources = ['%(namelower)s.%(version)s.tgz']
patches = ['VASP-%(version)s-NVHPC-23.5-CUDA-12.2.0-adjust-makefile.patch'] patches = ['VASP-%(version)s-NVHPC-24.3-CUDA-12.3.0-adjust-makefile.patch']
checksums = [ checksums = [
{'vasp.%(version)s.tgz': 'b704637f7384673f91adfbc803edc5cc7fe736d9623453461f7cdc29b123410e'}, {'vasp.%(version)s.tgz': 'fe30e773f2a3e909b5e0baa9654032dfbdeff7ec157bc348cee7681a7b6c24f4'},
{'VASP-%(version)s-NVHPC-23.5-CUDA-12.2.0-adjust-makefile.patch': {'VASP-%(version)s-NVHPC-24.3-CUDA-12.3.0-adjust-makefile.patch': '2991eb38d138f4066164d185968f37ad9ab88ec00ce80e7cfe9f095dffa115b5'},
'dfc717642ae2ce9b04ed78439fc4d1072dc0d08df4aca2da881b944f2e75625e'},
] ]
dependencies = [ dependencies = [