From 57b36493d0a833969088a1a07400ef2904c6f9bf Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Luk=C3=A1=C5=A1=20Krup=C4=8D=C3=ADk?= Date: Mon, 23 Sep 2019 07:19:51 +0200 Subject: [PATCH] deleted: a/ABINIT/ABINIT-7.10.1-foss-2015b.eb deleted: a/ADF/ADF-2014.11.r48287-intel-2016a.eb deleted: a/ALPS/ALPS-2.3.0-foss-2016b-Python-2.7.12.eb deleted: a/ALPS/ALPS-2.3.0-foss-2016b-Python-3.5.2.eb deleted: a/AmberTools/AmberTools-15-intel-2015b-Python-2.7.11.eb deleted: a/AmberTools/AmberTools-16-intel-2015b-Python-2.7.11.eb deleted: a/Armadillo/Armadillo-7.500.0-foss-2016a-Python-3.5.2.eb deleted: a/angsd/angsd-0.910-foss-2016a.eb deleted: a/arpack-ng/arpack-ng-3.3.0-foss-2016a.eb deleted: a/arpack-ng/arpack-ng-3.3.0-intel-2015b.eb deleted: b/BBMap/BBMap-35.82-foss-2015b-Java-1.8.0_66.eb deleted: b/BBMap/BBMap-35.82-foss-2015b-Java-1.8.0_74.eb deleted: b/BBMap/BBMap-36.62-intel-2016b-Java-1.8.0_112.eb deleted: b/BCFtools/BCFtools-1.2-foss-2015a.eb deleted: b/BCFtools/BCFtools-1.2-intel-2015a.eb 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mode 100644 y/Yade/Yade-2016.06a-foss-2016b-Python-2.7.12.eb delete mode 100644 y/Yade/Yade-2016.06a-intel-2016b-Python-2.7.12.eb delete mode 100644 y/Yambo/Yambo-3.4.2-intel-2016.02-GCC-4.9.eb diff --git a/a/ABINIT/ABINIT-7.10.1-foss-2015b.eb b/a/ABINIT/ABINIT-7.10.1-foss-2015b.eb deleted file mode 100644 index b32a9f66..00000000 --- a/a/ABINIT/ABINIT-7.10.1-foss-2015b.eb +++ /dev/null @@ -1,30 +0,0 @@ -# ABINIT recipe -# 2015 Martin Stachon -## - -easyblock = "ConfigureMake" - -name = 'ABINIT' -version = '7.10.1' - -homepage = 'http://www.abinit.org/' -description = """Abinit is a plane wave pseudopotential code for doing - condensed phase electronic structure calculations using DFT.""" - -toolchain = {'name': 'foss', 'version': '2015b'} - -# eg. http://ftp.abinit.org/abinit-7.10.1.tar.gz -sources = [('abinit-%s.tar.gz' % (version), 'tar xfz %s')] -source_urls = ['http://ftp.abinit.org/'] - -# sanity_check_paths = { -# 'files': ["bin/abinit"], -# 'dirs': [] -# } - -moduleclass = 'chem' - -configopts = '''CC=mpicc CXX=mpicxx FC=mpif90 --enable-mpi --enable-mpi-io --enable-64bit-flags --enable-optim="yes" --enable-clib="yes"''' + \ - ''' --enable-gw-dpc="yes" --enable-memory-profiling="no" --enable-openmp="no" --enable-maintainer-checks="no"''' + \ - ''' --enable-debug="no" ''' + \ - ''' --with-trio-flavor="netcdf+etsf_io+fox" --with-dft-flavor="atompaw+bigdft+libxc+wannier90"''' diff --git a/a/ADF/ADF-2014.11.r48287-intel-2016a.eb b/a/ADF/ADF-2014.11.r48287-intel-2016a.eb deleted file mode 100644 index 21843552..00000000 --- a/a/ADF/ADF-2014.11.r48287-intel-2016a.eb +++ /dev/null @@ -1,22 +0,0 @@ -name = 'ADF' -version = '2014.11.r48287' - -homepage = 'http://www.scm.com/ADF/' -description = """ADF is an accurate, parallelized, powerful computational chemistry program to understand and - predict chemical structure and reactivity with density functional theory (DFT).""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [ - '%(namelower)s%(version)s.src.tgz', - # no exact match on revision ID available, but not strictly needed - 'fix2014.pc64_linux.intelmpi.r48660.2.555.bin.tgz', -] - -license_file = HOME + "/licenses/ADF/license.txt" - -modloadmsg = "These environment variables need to be defined before using ADF:\n" -modloadmsg += " * $SCMLICENSE: path to ADF license file\n" -modloadmsg += " * $SCM_TMPDIR: path to user scratch directory" - -moduleclass = 'chem' diff --git a/a/ALPS/ALPS-2.3.0-foss-2016b-Python-2.7.12.eb b/a/ALPS/ALPS-2.3.0-foss-2016b-Python-2.7.12.eb deleted file mode 100644 index 3d27770b..00000000 --- a/a/ALPS/ALPS-2.3.0-foss-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,40 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'ALPS' -version = '2.3.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = "http://alps.comp-phys.org/" -description = """The ALPS project (Algorithms and Libraries for Physics Simulations) is an open source effort - aiming at providing high-end simulation codes for strongly correlated quantum mechanical systems as well as - C++ libraries for simplifying the development of such code. -""" - -toolchain = {'name': 'foss', 'version': '2016b'} -toolchainopts = {'cstd': 'c++03'} - -sources = ['%(namelower)s-%(version)s-src.tar.gz'] -source_urls = ['http://alps.comp-phys.org/static/software/releases/'] - -dependencies = [ - ('CMake', '3.6.2'), - ('Python', '2.7.12'), - ('Boost', '1.63.0', versionsuffix), - ('HDF5', '1.8.17') -] - -separate_build_dir = True - -modextravars = { - 'ALPS_ROOT': '$root', -} -modextrapaths = { - 'PYTHONPATH': ['lib/'] -} - -sanity_check_paths = { - 'files': ['lib/libalps.%s' % SHLIB_EXT], - 'dirs': ['include/alps', 'bin/', 'share/'], -} - -moduleclass = 'phys' diff --git a/a/ALPS/ALPS-2.3.0-foss-2016b-Python-3.5.2.eb b/a/ALPS/ALPS-2.3.0-foss-2016b-Python-3.5.2.eb deleted file mode 100644 index 86e64c99..00000000 --- a/a/ALPS/ALPS-2.3.0-foss-2016b-Python-3.5.2.eb +++ /dev/null @@ -1,40 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'ALPS' -version = '2.3.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = "http://alps.comp-phys.org/" -description = """The ALPS project (Algorithms and Libraries for Physics Simulations) is an open source effort - aiming at providing high-end simulation codes for strongly correlated quantum mechanical systems as well as - C++ libraries for simplifying the development of such code. -""" - -toolchain = {'name': 'foss', 'version': '2016b'} -toolchainopts = {'cstd': 'c++03'} - -sources = ['%(namelower)s-%(version)s-src.tar.gz'] -source_urls = ['http://alps.comp-phys.org/static/software/releases/'] - -dependencies = [ - ('CMake', '3.6.2'), - ('Python', '3.5.2'), - ('Boost', '1.63.0', versionsuffix), - ('HDF5', '1.8.17') -] - -separate_build_dir = True - -modextravars = { - 'ALPS_ROOT': '$root', -} -modextrapaths = { - 'PYTHONPATH': ['lib/'] -} - -sanity_check_paths = { - 'files': ['lib/libalps.%s' % SHLIB_EXT], - 'dirs': ['include/alps', 'bin/', 'share/'], -} - -moduleclass = 'phys' diff --git a/a/AmberTools/AmberTools-15-intel-2015b-Python-2.7.11.eb b/a/AmberTools/AmberTools-15-intel-2015b-Python-2.7.11.eb deleted file mode 100644 index f385ce0a..00000000 --- a/a/AmberTools/AmberTools-15-intel-2015b-Python-2.7.11.eb +++ /dev/null @@ -1,46 +0,0 @@ -# -# modified by Stephane Thiell (Stanford University) for Amber v14 -# -# author: Benjamin P. Roberts (University of Auckland) -# -# based on work by Marios Constantinou (University of Cyprus) -# -easyblock = 'ConfigureMake' - -name = 'AmberTools' -version = '14' - -homepage = 'http://ambermd.org/amber.html' -description = """Amber (originally Assisted Model Building with Energy - Refinement) is software for performing molecular dynamics and structure - prediction.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'openmp': False, 'usempi': True} - -ambertools_ver = '15' -sources = [ - # 'Amber%(version)s.tar.bz2', - 'AmberTools%s.tar.bz2' % ambertools_ver, -] - -configopts = '--no-updates' - -# patches = [ -# 'Amber-%(version)s_fix-hardcoding.patch', -# 'AmberTools-%s_fix-mdgx-print-bug.patch' % ambertools_ver, -#] - -dependencies = [ - # ('CUDA', '7.5.18', '', True), - # ('netCDF', '4.4.0'), - # ('netCDF-Fortran', '4.4.4'), - ('Python', '2.7.11'), -] - -patchlevels = (13, 13) -patchruns = 1 - -versionsuffix = '-Python-2.7.11)' - -moduleclass = 'chem' diff --git a/a/AmberTools/AmberTools-16-intel-2015b-Python-2.7.11.eb b/a/AmberTools/AmberTools-16-intel-2015b-Python-2.7.11.eb deleted file mode 100644 index f3864182..00000000 --- a/a/AmberTools/AmberTools-16-intel-2015b-Python-2.7.11.eb +++ /dev/null @@ -1,37 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'AmberTools' -version = '16' - -homepage = 'http://ambermd.org/amber.html' -description = """Amber (originally Assisted Model Building with Energy - Refinement) is software for performing molecular dynamics and structure - prediction.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'openmp': False, 'usempi': True} - -ambertools_ver = '16' -sources = [ - # 'Amber%(version)s.tar.bz2', - 'AmberTools%s.tar.bz2' % ambertools_ver, -] -patches = [ - # 'Amber-%(version)s_fix-hardcoding.patch', - 'AmberTools-%s_fix-mdgx-print-bug.patch' % ambertools_ver, -] - -dependencies = [ - # ('CUDA', '7.5.18', '', True), - # ('netCDF', '4.4.0'), - # ('netCDF-Fortran', '4.4.4'), - ('Python', '2.7.11'), -] - -patchlevels = (13, 13) -patchruns = 1 - -versionsuffix = '-AmberTools-%s-patchlevel-%d-%d' % ( - ambertools_ver, patchlevels[0], patchlevels[1]) - -moduleclass = 'chem' diff --git a/a/Armadillo/Armadillo-7.500.0-foss-2016a-Python-3.5.2.eb b/a/Armadillo/Armadillo-7.500.0-foss-2016a-Python-3.5.2.eb deleted file mode 100644 index e8f3b967..00000000 --- a/a/Armadillo/Armadillo-7.500.0-foss-2016a-Python-3.5.2.eb +++ /dev/null @@ -1,24 +0,0 @@ -name = 'Armadillo' -version = '7.500.0' -versionsuffix = '-Python-3.5.2' - -homepage = 'http://arma.sourceforge.net/' -description = """Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards - a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, - as well as a subset of trigonometric and statistics functions.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCELOWER_TAR_XZ] -source_urls = ['http://sourceforge.net/projects/arma/files'] - -dependencies = [ - ('Boost', '1.61.0', '-serial'), - ('arpack-ng', '3.3.0'), - ('CMake', '3.5.2'), - ('HDF5', '1.8.16'), - ('libxml2', '2.9.3'), - ('XZ', '5.2.2'), -] - -moduleclass = 'numlib' diff --git a/a/angsd/angsd-0.910-foss-2016a.eb b/a/angsd/angsd-0.910-foss-2016a.eb deleted file mode 100644 index 39352e91..00000000 --- a/a/angsd/angsd-0.910-foss-2016a.eb +++ /dev/null @@ -1,26 +0,0 @@ -easyblock = 'MakeCp' - -name = 'angsd' -version = '0.910' - -homepage = 'http://www.popgen.dk/angsd' -description = """Program for analysing NGS data.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://github.com/ANGSD/angsd/archive/'] -sources = ['%(version)s.tar.gz'] - -dependencies = [('HTSlib', '1.3.1')] - -files_to_copy = [ - (['angsd'], 'bin'), - 'doc', -] - -sanity_check_paths = { - 'files': ['bin/angsd'], - 'dirs': ['doc'], -} - -moduleclass = 'bio' diff --git a/a/arpack-ng/arpack-ng-3.3.0-foss-2016a.eb b/a/arpack-ng/arpack-ng-3.3.0-foss-2016a.eb deleted file mode 100644 index e082fa78..00000000 --- a/a/arpack-ng/arpack-ng-3.3.0-foss-2016a.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'arpack-ng' -version = '3.3.0' - -homepage = 'http://forge.scilab.org/index.php/p/arpack-ng/' -description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'opt': True, 'pic': True, 'usempi': True} - -source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] -sources = ['%(version)s.tar.gz'] - -builddependencies = [('Autotools', '20150215', '', ('foss', '2016a'))] - -preconfigopts = "sh bootstrap && " -configopts = '--with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"' - -sanity_check_paths = { - 'files': ["lib/libarpack.a", "lib/libarpack.so"], - 'dirs': [] -} - -moduleclass = 'numlib' diff --git a/a/arpack-ng/arpack-ng-3.3.0-intel-2015b.eb b/a/arpack-ng/arpack-ng-3.3.0-intel-2015b.eb deleted file mode 100644 index ccd45e2b..00000000 --- a/a/arpack-ng/arpack-ng-3.3.0-intel-2015b.eb +++ /dev/null @@ -1,26 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'arpack-ng' -version = '3.3.0' - -homepage = 'http://forge.scilab.org/index.php/p/arpack-ng/' -description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'opt': True, 'pic': True, 'usempi': True} - -source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] -sources = ['%(version)s.tar.gz'] - -# IT4I modification: because we have GCC 5.1.0 in intel/2015b toolchain... -builddependencies = [('Autotools', '20150215', '', ('GNU', '5.1.0-2.25'))] - -preconfigopts = "sh bootstrap && " -configopts = '--with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"' - -sanity_check_paths = { - 'files': ["lib/libarpack.a", "lib/libarpack.so"], - 'dirs': [] -} - -moduleclass = 'numlib' diff --git a/b/BBMap/BBMap-35.82-foss-2015b-Java-1.8.0_66.eb b/b/BBMap/BBMap-35.82-foss-2015b-Java-1.8.0_66.eb deleted file mode 100644 index 332ec749..00000000 --- a/b/BBMap/BBMap-35.82-foss-2015b-Java-1.8.0_66.eb +++ /dev/null @@ -1,36 +0,0 @@ -easyblock = 'MakeCp' - -name = 'BBMap' -version = '35.82' - -homepage = 'https://sourceforge.net/projects/bbmap/' -description = """BBMap short read aligner, and other bioinformatic tools.""" - -toolchain = {'name': 'foss', 'version': '2015b'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%(name)s_%(version)s.tar.gz'] - -java = 'Java' -javaver = '1.8.0_66' -versionsuffix = '-%s-%s' % (java, javaver) -dependencies = [(java, javaver, '', True)] - -prebuildopts = 'cd jni && ' - -suff = {'Darwin': 'osx', 'Linux': 'linux'}[OS_TYPE] -buildopts = "-f makefile.%s" % suff - -files_to_copy = ['*'] - -sanity_check_paths = { - 'files': ['bbmap.sh'], - 'dirs': [] -} - -modextrapaths = {'PATH': ''} - -modloadmsg = """For improved speed, add 'usejni=t' to the command line of %(name)s tools which support the use of the - compiled jni C code.""" - -moduleclass = 'bio' diff --git a/b/BBMap/BBMap-35.82-foss-2015b-Java-1.8.0_74.eb b/b/BBMap/BBMap-35.82-foss-2015b-Java-1.8.0_74.eb deleted file mode 100644 index d76ca5dc..00000000 --- a/b/BBMap/BBMap-35.82-foss-2015b-Java-1.8.0_74.eb +++ /dev/null @@ -1,36 +0,0 @@ -easyblock = 'MakeCp' - -name = 'BBMap' -version = '35.82' - -homepage = 'https://sourceforge.net/projects/bbmap/' -description = """BBMap short read aligner, and other bioinformatic tools.""" - -toolchain = {'name': 'foss', 'version': '2015b'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%(name)s_%(version)s.tar.gz'] - -java = 'Java' -javaver = '1.8.0_74' -versionsuffix = '-%s-%s' % (java, javaver) -dependencies = [(java, javaver, '', True)] - -prebuildopts = 'cd jni && ' - -suff = {'Darwin': 'osx', 'Linux': 'linux'}[OS_TYPE] -buildopts = "-f makefile.%s" % suff - -files_to_copy = ['*'] - -sanity_check_paths = { - 'files': ['bbmap.sh'], - 'dirs': [] -} - -modextrapaths = {'PATH': ''} - -modloadmsg = """For improved speed, add 'usejni=t' to the command line of %(name)s tools which support the use of the - compiled jni C code.""" - -moduleclass = 'bio' diff --git a/b/BBMap/BBMap-36.62-intel-2016b-Java-1.8.0_112.eb b/b/BBMap/BBMap-36.62-intel-2016b-Java-1.8.0_112.eb deleted file mode 100644 index 52eabb1b..00000000 --- a/b/BBMap/BBMap-36.62-intel-2016b-Java-1.8.0_112.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'MakeCp' - -name = 'BBMap' -version = '36.62' -versionsuffix = '-Java-%(javaver)s' - -homepage = 'https://sourceforge.net/projects/bbmap/' -description = """BBMap short read aligner, and other bioinformatic tools.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%(name)s_%(version)s.tar.gz'] - -dependencies = [('Java', '1.8.0_112', '', True)] - -prebuildopts = 'cd jni && ' - -suff = {'Darwin': 'osx', 'Linux': 'linux'}[OS_TYPE] -buildopts = "-f makefile.%s" % suff - -files_to_copy = ['*'] - -sanity_check_paths = { - 'files': ['bbmap.sh'], - 'dirs': [] -} - -modextrapaths = {'PATH': ''} - -modloadmsg = "For improved speed, add 'usejni=t' to the command line of %(name)s tools which support the use of the" -modloadmsg += " compiled jni C code.\n" - -moduleclass = 'bio' diff --git a/b/BCFtools/BCFtools-1.2-foss-2015a.eb b/b/BCFtools/BCFtools-1.2-foss-2015a.eb deleted file mode 100644 index 6bbb53af..00000000 --- a/b/BCFtools/BCFtools-1.2-foss-2015a.eb +++ /dev/null @@ -1,45 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'BCFtools' -version = '1.2' - -homepage = 'http://www.htslib.org/' -description = """Samtools is a suite of programs for interacting with high-throughput sequencing data. - BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants""" - -toolchain = {'name': 'foss', 'version': '2015a'} -toolchainopts = {'optarch': True, 'pic': True} - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = [ - 'https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] - -patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] - -dependencies = [ - ('HTSlib', '1.2.1'), - ('zlib', '1.2.8'), -] - -parallel = 1 - -skipsteps = ['configure'] - -installopts = ' prefix=%(installdir)s' - -postinstallcmds = [ - 'mkdir -p %(installdir)s/lib/plugins', - 'cp -a plugins/*.so %(installdir)s/lib/plugins/.', -] - -sanity_check_paths = { - 'files': [ - 'bin/%s' % - x for x in [ - 'bcftools', - 'plot-vcfstats', - 'vcfutils.pl']], - 'dirs': ['lib/plugins'], -} - -moduleclass = 'bio' diff --git a/b/BCFtools/BCFtools-1.2-intel-2015a.eb b/b/BCFtools/BCFtools-1.2-intel-2015a.eb deleted file mode 100644 index 093f08fd..00000000 --- a/b/BCFtools/BCFtools-1.2-intel-2015a.eb +++ /dev/null @@ -1,45 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'BCFtools' -version = '1.2' - -homepage = 'http://www.htslib.org/' -description = """Samtools is a suite of programs for interacting with high-throughput sequencing data. - BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'optarch': True, 'pic': True} - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = [ - 'https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] - -patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] - -dependencies = [ - ('HTSlib', '1.2.1'), - ('zlib', '1.2.8'), -] - -parallel = 1 - -skipsteps = ['configure'] - -installopts = ' prefix=%(installdir)s' - -postinstallcmds = [ - 'mkdir -p %(installdir)s/lib/plugins', - 'cp -a plugins/*.so %(installdir)s/lib/plugins/.', -] - -sanity_check_paths = { - 'files': [ - 'bin/%s' % - x for x in [ - 'bcftools', - 'plot-vcfstats', - 'vcfutils.pl']], - 'dirs': ['lib/plugins'], -} - -moduleclass = 'bio' diff --git a/b/BCFtools/BCFtools-1.3-foss-2015g.eb b/b/BCFtools/BCFtools-1.3-foss-2015g.eb deleted file mode 100644 index 33eac029..00000000 --- a/b/BCFtools/BCFtools-1.3-foss-2015g.eb +++ /dev/null @@ -1,43 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'BCFtools' -version = '1.3' - -homepage = 'http://www.htslib.org/' -description = """Samtools is a suite of programs for interacting with high-throughput sequencing data. - BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'optarch': True, 'pic': True} - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = [ - 'https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] - -dependencies = [ - ('HTSlib', '1.3'), - ('zlib', '1.2.8'), -] - -parallel = 1 - -skipsteps = ['configure'] - -installopts = ' prefix=%(installdir)s' - -postinstallcmds = [ - 'mkdir -p %(installdir)s/lib/plugins', - 'cp plugins/*.so %(installdir)s/lib/plugins/.', -] - -sanity_check_paths = { - 'files': [ - 'bin/%s' % - x for x in [ - 'bcftools', - 'plot-vcfstats', - 'vcfutils.pl']], - 'dirs': ['lib/plugins'], -} - -moduleclass = 'bio' diff --git a/b/BCFtools/BCFtools-1.3-foss-2016a.eb b/b/BCFtools/BCFtools-1.3-foss-2016a.eb deleted file mode 100644 index 6deeacf2..00000000 --- a/b/BCFtools/BCFtools-1.3-foss-2016a.eb +++ /dev/null @@ -1,47 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'BCFtools' -version = '1.3' - -homepage = 'http://www.htslib.org/' -description = """Samtools is a suite of programs for interacting with high-throughput sequencing data. - BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'optarch': True, 'pic': True} - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = [ - 'https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] - -patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] - -dependencies = [ - ('HTSlib', '1.3'), - ('zlib', '1.2.8'), - ('GSL', '2.1'), -] - -parallel = 1 - -skipsteps = ['configure'] - -buildopts = 'CC="$CC" CFLAGS="$CFLAGS" USE_GSL=1' -installopts = ' prefix=%(installdir)s' - -postinstallcmds = [ - 'mkdir -p %(installdir)s/lib/plugins', - 'cp -a plugins/*.so %(installdir)s/lib/plugins/.', -] - -sanity_check_paths = { - 'files': [ - 'bin/%s' % - x for x in [ - 'bcftools', - 'plot-vcfstats', - 'vcfutils.pl']], - 'dirs': ['lib/plugins'], -} - -moduleclass = 'bio' diff --git a/b/BCFtools/BCFtools-1.3-intel-2016a.eb b/b/BCFtools/BCFtools-1.3-intel-2016a.eb deleted file mode 100644 index 855e5c95..00000000 --- a/b/BCFtools/BCFtools-1.3-intel-2016a.eb +++ /dev/null @@ -1,47 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'BCFtools' -version = '1.3' - -homepage = 'http://www.htslib.org/' -description = """Samtools is a suite of programs for interacting with high-throughput sequencing data. - BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'optarch': True, 'pic': True} - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = [ - 'https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] - -patches = ['BCFtools-%(version)s_extHTSlib_Makefile.patch'] - -dependencies = [ - ('zlib', '1.2.8'), - ('HTSlib', '1.3'), - ('GSL', '2.1'), -] - -parallel = 1 - -skipsteps = ['configure'] - -buildopts = 'CC="$CC" CFLAGS="$CFLAGS" USE_GSL=1' -installopts = ' prefix=%(installdir)s' - -postinstallcmds = [ - 'mkdir -p %(installdir)s/lib/plugins', - 'cp -a plugins/*.so %(installdir)s/lib/plugins/.', -] - -sanity_check_paths = { - 'files': [ - 'bin/%s' % - x for x in [ - 'bcftools', - 'plot-vcfstats', - 'vcfutils.pl']], - 'dirs': ['lib/plugins'], -} - -moduleclass = 'bio' diff --git a/b/BamUtil/BamUtil-1.0.13-foss-2015b.eb b/b/BamUtil/BamUtil-1.0.13-foss-2015b.eb deleted file mode 100644 index 66b054cc..00000000 --- a/b/BamUtil/BamUtil-1.0.13-foss-2015b.eb +++ /dev/null @@ -1,31 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Author: Adam Huffman -# adam.huffman@crick.ac.uk -# The Francis Crick Institute -# -# This is the version with the bundled libStatGen library - -name = 'BamUtil' -version = '1.0.13' - -easyblock = 'MakeCp' - -homepage = 'http://genome.sph.umich.edu/wiki/BamUtil' -description = """BamUtil is a repository that contains several programs - that perform operations on SAM/BAM files. All of these programs - are built into a single executable, bam.""" - -toolchain = {'name': 'foss', 'version': '2015b'} - -sources = ['%(name)sLibStatGen.%(version)s.tgz'] -source_urls = ['http://genome.sph.umich.edu/w/images/7/70/'] - -files_to_copy = ["bamUtil/bin", "libStatGen"] - -sanity_check_paths = { - 'files': ["bin/bam"], - 'dirs': ["libStatGen"], -} - -moduleclass = 'bio' diff --git a/b/Bash/Bash-4.2-intel-2015b.eb b/b/Bash/Bash-4.2-intel-2015b.eb deleted file mode 100644 index 700ec25e..00000000 --- a/b/Bash/Bash-4.2-intel-2015b.eb +++ /dev/null @@ -1,33 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit -# Authors:: Valentin Plugaru -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html -## - -easyblock = 'ConfigureMake' - -name = 'Bash' -version = '4.2' - -homepage = 'http://www.gnu.org/software/bash' -description = """Bash is an sh-compatible command language interpreter that executes commands - read from the standard input or from a file. Bash also incorporates useful features from the - Korn and C shells (ksh and csh).""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [GNU_SOURCE] - -sanity_check_paths = { - 'files': ["bin/bash"], - 'dirs': [] -} - -moduleclass = 'tools' diff --git a/b/BayeScEnv/BayeScEnv-1.1-foss-2016a.eb b/b/BayeScEnv/BayeScEnv-1.1-foss-2016a.eb deleted file mode 100644 index 20cffc24..00000000 --- a/b/BayeScEnv/BayeScEnv-1.1-foss-2016a.eb +++ /dev/null @@ -1,33 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# sciCORE - University of Basel -# SIB Swiss Institute of Bioinformatics - -easyblock = 'MakeCp' - -name = 'BayeScEnv' -version = '1.1' - -homepage = 'https://github.com/devillemereuil/bayescenv' -description = """BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect -local adaptation.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'openmp': True} - -source_urls = ['https://github.com/devillemereuil/bayescenv/archive/'] -sources = ['v%(version)s.tar.gz'] - -start_dir = 'source' - -files_to_copy = [(['source/bayescenv'], 'bin'), 'test', - 'COPYING', 'README.md', 'ChangeLog'] - -parallel = 1 - -sanity_check_paths = { - 'files': ['bin/bayescenv'], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/b/BayeScan/BayeScan-2.1-foss-2016a.eb b/b/BayeScan/BayeScan-2.1-foss-2016a.eb deleted file mode 100644 index ebd814c5..00000000 --- a/b/BayeScan/BayeScan-2.1-foss-2016a.eb +++ /dev/null @@ -1,39 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# sciCORE - University of Basel -# SIB Swiss Institute of Bioinformatics - -easyblock = 'MakeCp' - -name = 'BayeScan' -version = '2.1' - -homepage = 'http://cmpg.unibe.ch/software/BayeScan/' -description = """BayeScan aims at identifying candidate loci under natural selection from genetic data, - using differences in allele frequencies between populations.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'openmp': True} - -source_urls = ['http://cmpg.unibe.ch/software/BayeScan/files/'] -sources = ['%(name)s%(version)s.zip'] - -prebuildopts = "sed -i.bk 's/g++/${CXX} ${CXXFLAGS}/g' Makefile && " - -start_dir = 'source' - -files_to_copy = [ - (['source/bayescan_%(version)s'], 'bin'), - 'BayeScan%(version)s_manual.pdf', - 'input_examples', - 'R functions' -] - -parallel = 1 - -sanity_check_paths = { - 'files': ['bin/bayescan_%(version)s'], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/b/BayesAss/BayesAss-3.0.4-foss-2016a.eb b/b/BayesAss/BayesAss-3.0.4-foss-2016a.eb deleted file mode 100644 index 4a81bc8c..00000000 --- a/b/BayesAss/BayesAss-3.0.4-foss-2016a.eb +++ /dev/null @@ -1,28 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'BayesAss' -version = '3.0.4' - -homepage = 'http://www.rannala.org/?page_id=245' -description = """ -BayesAss: Bayesian Inference of Recent Migration Using Multilocus Genotypes -""" - -toolchain = {'name': 'foss', 'version': '2016a'} -sources = ['BA3-%(version)s.tar.gz'] - -source_urls = [ - 'http://downloads.sourceforge.net/project/bayesass/BA3/%(version)s/src/'] - -dependencies = [ - ('GSL', '2.1') -] - -runtest = 'check' - -sanity_check_paths = { - 'files': ['bin/BA3'], - 'dirs': ['bin', 'include'] -} - -moduleclass = 'bio' diff --git a/b/BerkeleyGW/BerkeleyGW-1.0.6-intel-2016.02-GCC-4.9.eb b/b/BerkeleyGW/BerkeleyGW-1.0.6-intel-2016.02-GCC-4.9.eb deleted file mode 100644 index ff35b3fe..00000000 --- a/b/BerkeleyGW/BerkeleyGW-1.0.6-intel-2016.02-GCC-4.9.eb +++ /dev/null @@ -1,37 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'BerkeleyGW' -version = "1.0.6" - -homepage = 'http://www.berkeleygw.org' -description = """The BerkeleyGW Package is a set of computer codes that calculates the quasiparticle - properties and the optical responses of a large variety of materials from bulk periodic crystals to - nanostructures such as slabs, wires and molecules.""" - -toolchain = {'name': 'intel', 'version': '2016.02-GCC-4.9'} -toolchainopts = {'usempi': True} - -source_urls = ['http://www.berkeleygw.org/releases/'] -sources = ['BGW-%(version)s.tar.gz'] -checksums = ['8740562da41e87a62eb8d457675e4bfd'] - -skipsteps = ['configure'] - -prebuildopts = 'cp config/generic.mpi.linux.mk arch.mk && ' - -buildopts = 'all-flavors COMPFLAG=-DINTEL PARAFLAG="-DMPI -DOMP" DEBUGFLAG="" F90free="$MPIF90 -free" LINK="$MPIF90" ' -buildopts += 'FOPTS="$FFLAGS -qopenmp" MOD_OPT="-module " C_PARAFLAG="$PARAFLAG" CC_COMP="$MPICXX" C_COMP="$MPICC" ' -buildopts += 'C_LINK="$MPICXX" C_OPTS="$CFLAGS -qopenmp" MKLPATH="$MKLROOT" LAPACKLIB="$LIBLAPACK" ' -buildopts += 'BLACSDIR="$BLACS_LIB_DIR" BLACS="$LIBBLACS" SCALAPACKLIB="$LIBSCALAPACK" ' -buildopts += 'FFTWINCLUDE="$FFTW_INC_DIR" FFTWLIB="$MKLROOT/lib/intel64/libfftw2xf_double_intel.a" ' - -installopts = 'INSTDIR=%(installdir)s' - -sanity_check_paths = { - 'files': ['bin/' + prog + '.' + flavor + '.x' - for prog in ['epsilon', 'sigma', 'kernel', 'absorption'] - for flavor in ['real', 'cplx']], - 'dirs': [] -} - -moduleclass = 'phys' diff --git a/b/BerkeleyGW/BerkeleyGW-1.1-beta2-intel-2016.02-GCC-4.9.eb b/b/BerkeleyGW/BerkeleyGW-1.1-beta2-intel-2016.02-GCC-4.9.eb deleted file mode 100644 index 0f2dfc08..00000000 --- a/b/BerkeleyGW/BerkeleyGW-1.1-beta2-intel-2016.02-GCC-4.9.eb +++ /dev/null @@ -1,37 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'BerkeleyGW' -version = "1.1-beta2" - -homepage = 'http://www.berkeleygw.org' -description = """The BerkeleyGW Package is a set of computer codes that calculates the quasiparticle - properties and the optical responses of a large variety of materials from bulk periodic crystals to - nanostructures such as slabs, wires and molecules.""" - -toolchain = {'name': 'intel', 'version': '2016.02-GCC-4.9'} -toolchainopts = {'usempi': True} - -source_urls = ['http://www.berkeleygw.org/releases/'] -sources = ['BGW-%(version)s.tar.gz'] -checksums = ['75a258c9a5d255da9e0b15bd3e7f08b2'] - -skipsteps = ['configure'] - -prebuildopts = 'cp config/generic.mpi.linux.mk arch.mk && ' - -buildopts = 'all-flavors COMPFLAG=-DINTEL PARAFLAG="-DMPI -DOMP" DEBUGFLAG="" F90free="$MPIF90 -free" LINK="$MPIF90" ' -buildopts += 'FOPTS="$FFLAGS -qopenmp" MOD_OPT="-module " C_PARAFLAG="$PARAFLAG" CC_COMP="$MPICXX" C_COMP="$MPICC" ' -buildopts += 'C_LINK="$MPICXX" C_OPTS="$CFLAGS -qopenmp" MKLPATH="$MKLROOT" LAPACKLIB="$LIBLAPACK" ' -buildopts += 'BLACSDIR="$BLACS_LIB_DIR" BLACS="$LIBBLACS" SCALAPACKLIB="$LIBSCALAPACK" ' -buildopts += 'FFTWINCLUDE="$FFTW_INC_DIR" FFTWLIB="$MKLROOT/lib/intel64/libfftw2xf_double_intel.a" ' - -installopts = 'INSTDIR=%(installdir)s' - -sanity_check_paths = { - 'files': ['bin/' + prog + '.' + flavor + '.x' - for prog in ['epsilon', 'sigma', 'kernel', 'absorption'] - for flavor in ['real', 'cplx']], - 'dirs': [] -} - -moduleclass = 'phys' diff --git a/b/BioPerl/BioPerl-1.6.924-foss-2016a-Perl-5.22.1.eb b/b/BioPerl/BioPerl-1.6.924-foss-2016a-Perl-5.22.1.eb deleted file mode 100644 index c32f54aa..00000000 --- a/b/BioPerl/BioPerl-1.6.924-foss-2016a-Perl-5.22.1.eb +++ /dev/null @@ -1,39 +0,0 @@ -easyblock = 'Bundle' - -name = 'BioPerl' -version = '1.6.924' -versionsuffix = '-Perl-%(perlver)s' - -homepage = 'http://www.bioperl.org/' -description = """Bioperl is the product of a community effort to produce Perl code which is useful in biology. - Examples include Sequence objects, Alignment objects and database searching objects.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -# this is a bundle of Perl modules -exts_defaultclass = 'PerlModule' -exts_filter = ("perldoc -lm %(ext_name)s ", "") - -dependencies = [ - ('Perl', '5.22.1'), - ('DB_File', '1.835', versionsuffix), -] - -exts_list = [ - # CGI has been removed from the Perl core since version 5.22 - ('CGI', '4.28', { - 'source_tmpl': 'CGI-4.28.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEEJO/'], - }), - (name, version, { - 'modulename': 'Bio::Perl', - 'source_tmpl': 'release-%s.tar.gz' % version.replace('.', '-'), - 'source_urls': ['https://github.com/bioperl/bioperl-live/archive/'], - }), -] - -modextrapaths = { - 'PERL5LIB': 'lib/perl5/site_perl/%(perlver)s/' -} - -moduleclass = 'bio' diff --git a/b/Biopython/Biopython-1.65-foss-2016a-Python-2.7.11.eb b/b/Biopython/Biopython-1.65-foss-2016a-Python-2.7.11.eb deleted file mode 100644 index 8180fce5..00000000 --- a/b/Biopython/Biopython-1.65-foss-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,38 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2013 The Cyprus Institute -# Authors:: Andreas Panteli , Thekla Loizou , George Tsouloupas -# License:: MIT/GPL -# -## -easyblock = "PythonPackage" - -name = 'Biopython' -version = '1.65' -versionsuffix = "-Python-%(pyver)s" - -homepage = 'http://www.biopython.org' -description = """Biopython is a set of freely available tools for biological computation written -in Python by an international team of developers. It is a distributed collaborative effort to -develop Python libraries and applications which address the needs of current and future work in -bioinformatics. """ - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://biopython.org/DIST'] -sources = ['%(namelower)s-%(version)s.tar.gz'] - -dependencies = [ - ('Python', '2.7.11') -] - -sanity_check_paths = { - 'files': [], - 'dirs': [ - 'lib/python%(pyshortver)s/site-packages/Bio', - 'lib/python%(pyshortver)s/site-packages/BioSQL']} - -options = {'modulename': 'Bio'} - -moduleclass = 'bio' diff --git a/b/Biopython/Biopython-1.68-foss-2016b-Python-2.7.12.eb b/b/Biopython/Biopython-1.68-foss-2016b-Python-2.7.12.eb deleted file mode 100644 index 4328ed5a..00000000 --- a/b/Biopython/Biopython-1.68-foss-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,42 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2013 The Cyprus Institute -# Authors:: Andreas Panteli , Thekla Loizou , George Tsouloupas -# License:: MIT/GPL -# -## -# foss-2016b modified by: -# Adam Huffman -# The Francis Crick Institute - -easyblock = "PythonPackage" - -name = 'Biopython' -version = '1.68' -versionsuffix = "-Python-%(pyver)s" - -homepage = 'http://www.biopython.org' -description = """Biopython is a set of freely available tools for biological computation written -in Python by an international team of developers. It is a distributed collaborative effort to -develop Python libraries and applications which address the needs of current and future work in -bioinformatics. """ - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = ['http://biopython.org/DIST'] -sources = ['%(namelower)s-%(version)s.tar.gz'] - -dependencies = [ - ('Python', '2.7.12') -] - -sanity_check_paths = { - 'files': [], - 'dirs': [ - 'lib/python%(pyshortver)s/site-packages/Bio', - 'lib/python%(pyshortver)s/site-packages/BioSQL']} - -options = {'modulename': 'Bio'} - -moduleclass = 'bio' diff --git a/b/Biopython/Biopython-1.68-intel-2016b-Python-2.7.12.eb b/b/Biopython/Biopython-1.68-intel-2016b-Python-2.7.12.eb deleted file mode 100644 index ad689cda..00000000 --- a/b/Biopython/Biopython-1.68-intel-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,38 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2013 The Cyprus Institute -# Authors:: Andreas Panteli , Thekla Loizou , George Tsouloupas -# License:: MIT/GPL -# -## -easyblock = 'PythonPackage' - -name = 'Biopython' -version = '1.68' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.biopython.org' -description = """Biopython is a set of freely available tools for biological computation written -in Python by an international team of developers. It is a distributed collaborative effort to -develop Python libraries and applications which address the needs of current and future work in -bioinformatics. """ - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = ['http://biopython.org/DIST'] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [ - ('Python', '2.7.12') -] - -sanity_check_paths = { - 'files': [], - 'dirs': [ - 'lib/python%(pyshortver)s/site-packages/Bio', - 'lib/python%(pyshortver)s/site-packages/BioSQL']} - -options = {'modulename': 'Bio'} - -moduleclass = 'bio' diff --git a/b/Biopython/Biopython-1.68-intel-2016b-Python-3.5.2.eb b/b/Biopython/Biopython-1.68-intel-2016b-Python-3.5.2.eb deleted file mode 100644 index cfc59e58..00000000 --- a/b/Biopython/Biopython-1.68-intel-2016b-Python-3.5.2.eb +++ /dev/null @@ -1,38 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2013 The Cyprus Institute -# Authors:: Andreas Panteli , Thekla Loizou , George Tsouloupas -# License:: MIT/GPL -# -## -easyblock = 'PythonPackage' - -name = 'Biopython' -version = '1.68' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.biopython.org' -description = """Biopython is a set of freely available tools for biological computation written -in Python by an international team of developers. It is a distributed collaborative effort to -develop Python libraries and applications which address the needs of current and future work in -bioinformatics. """ - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = ['http://biopython.org/DIST'] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [ - ('Python', '3.5.2') -] - -sanity_check_paths = { - 'files': [], - 'dirs': [ - 'lib/python%(pyshortver)s/site-packages/Bio', - 'lib/python%(pyshortver)s/site-packages/BioSQL']} - -options = {'modulename': 'Bio'} - -moduleclass = 'bio' diff --git a/b/Boost/Boost-1.58.0-foss-2015g-Python-2.7.9.eb b/b/Boost/Boost-1.58.0-foss-2015g-Python-2.7.9.eb deleted file mode 100644 index 764b67b4..00000000 --- a/b/Boost/Boost-1.58.0-foss-2015g-Python-2.7.9.eb +++ /dev/null @@ -1,26 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-08-10_13-26-38 -name = 'Boost' -version = '1.58.0' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -pythonversion = '2.7.9' -versionsuffix = '-Python-%s' % pythonversion - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('Python', pythonversion), -] - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.58.0-intel-2015b-Python-2.7.9.eb b/b/Boost/Boost-1.58.0-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index d1051a75..00000000 --- a/b/Boost/Boost-1.58.0-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,25 +0,0 @@ -name = 'Boost' -version = '1.58.0' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -pythonversion = '2.7.9' -versionsuffix = '-Python-%s' % pythonversion - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('Python', pythonversion), -] - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.60.0-foss-2015a.eb b/b/Boost/Boost-1.60.0-foss-2015a.eb deleted file mode 100644 index 76d7cbc2..00000000 --- a/b/Boost/Boost-1.60.0-foss-2015a.eb +++ /dev/null @@ -1,23 +0,0 @@ -name = 'Boost' -version = '1.60.0' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'foss', 'version': '2015a'} -toolchainopts = {'pic': True, 'usempi': True} - -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] -source_urls = [SOURCEFORGE_SOURCE] - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), -] - -configopts = '--without-libraries=python' - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.60.0-foss-2015b.eb b/b/Boost/Boost-1.60.0-foss-2015b.eb deleted file mode 100644 index 63197810..00000000 --- a/b/Boost/Boost-1.60.0-foss-2015b.eb +++ /dev/null @@ -1,23 +0,0 @@ -name = 'Boost' -version = '1.60.0' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'foss', 'version': '2015b'} -toolchainopts = {'pic': True, 'usempi': True} - -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] -source_urls = [SOURCEFORGE_SOURCE] - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), -] - -configopts = '--without-libraries=python' - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.60.0-foss-2015g-Python-2.7.9.eb b/b/Boost/Boost-1.60.0-foss-2015g-Python-2.7.9.eb deleted file mode 100644 index 2887ffaf..00000000 --- a/b/Boost/Boost-1.60.0-foss-2015g-Python-2.7.9.eb +++ /dev/null @@ -1,26 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-08-10_13-26-38 -name = 'Boost' -version = '1.60.0' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -pythonversion = '2.7.9' -versionsuffix = '-Python-%s' % pythonversion - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('Python', pythonversion), -] - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.60.0-foss-2016a-Python-2.7.11.eb b/b/Boost/Boost-1.60.0-foss-2016a-Python-2.7.11.eb deleted file mode 100644 index a913c208..00000000 --- a/b/Boost/Boost-1.60.0-foss-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,23 +0,0 @@ -name = 'Boost' -version = '1.60.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('Python', '2.7.11'), -] - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.60.0-foss-2016a.eb b/b/Boost/Boost-1.60.0-foss-2016a.eb deleted file mode 100644 index c5051071..00000000 --- a/b/Boost/Boost-1.60.0-foss-2016a.eb +++ /dev/null @@ -1,23 +0,0 @@ -name = 'Boost' -version = '1.60.0' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'pic': True, 'usempi': True} - -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] -source_urls = [SOURCEFORGE_SOURCE] - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), -] - -configopts = '--without-libraries=python' - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.60.0-intel-2015b-Python-2.7.11.eb b/b/Boost/Boost-1.60.0-intel-2015b-Python-2.7.11.eb deleted file mode 100644 index cdf31cad..00000000 --- a/b/Boost/Boost-1.60.0-intel-2015b-Python-2.7.11.eb +++ /dev/null @@ -1,23 +0,0 @@ -name = 'Boost' -version = '1.60.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('Python', '2.7.11'), -] - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.60.0-intel-2016a-Python-2.7.11.eb b/b/Boost/Boost-1.60.0-intel-2016a-Python-2.7.11.eb deleted file mode 100644 index 5a422511..00000000 --- a/b/Boost/Boost-1.60.0-intel-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,23 +0,0 @@ -name = 'Boost' -version = '1.60.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('Python', '2.7.11'), -] - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.60.0-intel-2016a.eb b/b/Boost/Boost-1.60.0-intel-2016a.eb deleted file mode 100644 index c6b8b5f0..00000000 --- a/b/Boost/Boost-1.60.0-intel-2016a.eb +++ /dev/null @@ -1,21 +0,0 @@ -name = 'Boost' -version = '1.60.0' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), -] - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.61.0-foss-2016a-Python-3.5.2.eb b/b/Boost/Boost-1.61.0-foss-2016a-Python-3.5.2.eb deleted file mode 100644 index cda60bff..00000000 --- a/b/Boost/Boost-1.61.0-foss-2016a-Python-3.5.2.eb +++ /dev/null @@ -1,23 +0,0 @@ -name = 'Boost' -version = '1.61.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('Python', '3.5.2'), -] - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.61.0-foss-2016a-serial.eb b/b/Boost/Boost-1.61.0-foss-2016a-serial.eb deleted file mode 100644 index 4a2f24fa..00000000 --- a/b/Boost/Boost-1.61.0-foss-2016a-serial.eb +++ /dev/null @@ -1,25 +0,0 @@ -name = 'Boost' -version = '1.61.0' -versionsuffix = '-serial' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), -] - -configopts = '--with-libraries=serialization' -configopts = '--without-libraries=python' - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.61.0-foss-2016a.eb b/b/Boost/Boost-1.61.0-foss-2016a.eb deleted file mode 100644 index 3eb69288..00000000 --- a/b/Boost/Boost-1.61.0-foss-2016a.eb +++ /dev/null @@ -1,23 +0,0 @@ -name = 'Boost' -version = '1.61.0' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), -] - -configopts = '--without-libraries=python' - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.61.0-intel-2016a-Python-2.7.11.eb b/b/Boost/Boost-1.61.0-intel-2016a-Python-2.7.11.eb deleted file mode 100644 index 822d74b1..00000000 --- a/b/Boost/Boost-1.61.0-intel-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,23 +0,0 @@ -name = 'Boost' -version = '1.61.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('Python', '2.7.11'), -] - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.61.0-intel-2016a.eb b/b/Boost/Boost-1.61.0-intel-2016a.eb deleted file mode 100644 index 7840698e..00000000 --- a/b/Boost/Boost-1.61.0-intel-2016a.eb +++ /dev/null @@ -1,21 +0,0 @@ -name = 'Boost' -version = '1.61.0' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), -] - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.61.0-intel-2016b-Python-2.7.12.eb b/b/Boost/Boost-1.61.0-intel-2016b-Python-2.7.12.eb deleted file mode 100644 index 015aad27..00000000 --- a/b/Boost/Boost-1.61.0-intel-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,23 +0,0 @@ -name = 'Boost' -version = '1.61.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'intel', 'version': '2016b'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('Python', '2.7.12'), -] - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.61.0-intel-2016b.eb b/b/Boost/Boost-1.61.0-intel-2016b.eb deleted file mode 100644 index 67f61996..00000000 --- a/b/Boost/Boost-1.61.0-intel-2016b.eb +++ /dev/null @@ -1,23 +0,0 @@ -name = 'Boost' -version = '1.61.0' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'intel', 'version': '2016b'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), -] - -configopts = '--without-libraries=python' - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.62.0-intel-2016b-Python-2.7.12.eb b/b/Boost/Boost-1.62.0-intel-2016b-Python-2.7.12.eb deleted file mode 100644 index 8f216753..00000000 --- a/b/Boost/Boost-1.62.0-intel-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,23 +0,0 @@ -name = 'Boost' -version = '1.62.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'intel', 'version': '2016b'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('Python', '2.7.12'), -] - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.63.0-foss-2015g-Python-3.6.1.eb b/b/Boost/Boost-1.63.0-foss-2015g-Python-3.6.1.eb deleted file mode 100644 index 536dd0ec..00000000 --- a/b/Boost/Boost-1.63.0-foss-2015g-Python-3.6.1.eb +++ /dev/null @@ -1,27 +0,0 @@ -name = 'Boost' -version = '1.63.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -patches = [ - 'Boost-%(version)s_python3.patch', -] - -dependencies = [ - ('bzip2', '1.0.6', '', True), - ('zlib', '1.2.11', '', True), - ('Python', '3.6.1', '', True), -] - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Boost/Boost-1.63.0-foss-2016a-Python-2.7.13.eb b/b/Boost/Boost-1.63.0-foss-2016a-Python-2.7.13.eb deleted file mode 100644 index 13ea4be4..00000000 --- a/b/Boost/Boost-1.63.0-foss-2016a-Python-2.7.13.eb +++ /dev/null @@ -1,28 +0,0 @@ -name = 'Boost' -version = '1.63.0' - -homepage = 'http://www.boost.org/' -description = """Boost provides free peer-reviewed portable C++ source libraries.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] - -pythonversion = '2.7.13' -versionsuffix = '-Python-%s' % pythonversion - -dependencies = [ - ('bzip2', '1.0.6', '', True), - ('zlib', '1.2.11', '', True), - ('Python', pythonversion, '', True) -] - -configopts = '--with-python=$EBROOTPYTHON/bin/python' -buildopts = '-fPIC &&' - -# also build boost_mpi -boost_mpi = True - -moduleclass = 'devel' diff --git a/b/Bowtie2/Bowtie2-2.2.5-intel-2015a.eb b/b/Bowtie2/Bowtie2-2.2.5-intel-2015a.eb deleted file mode 100644 index 92295aff..00000000 --- a/b/Bowtie2/Bowtie2-2.2.5-intel-2015a.eb +++ /dev/null @@ -1,55 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# Swiss Institute of Bioinformatics -# Biozentrum - University of Basel -# Modified by: Robert Schmidt -# Ottawa Hospital Research Institute - Bioinformatics Team - -easyblock = 'MakeCp' - -name = 'Bowtie2' -version = '2.2.5' - -homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' -description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads - to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s - of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. - Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, - its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -sources = ['%(namelower)s-%(version)s-source.zip'] -source_urls = [ - ('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', - 'download')] - -files_to_copy = [(["bowtie2", - "bowtie2-align-l", - "bowtie2-align-s", - "bowtie2-build", - "bowtie2-build-l", - "bowtie2-build-s", - "bowtie2-inspect", - "bowtie2-inspect-l", - "bowtie2-inspect-s"], - 'bin'), - "doc", - "example", - "scripts", - "MANUAL", - "MANUAL.markdown", - "NEWS"] - -sanity_check_paths = { - 'files': [ - "bin/bowtie2-align-l", - "bin/bowtie2-build", - "bin/bowtie2-inspect"], - 'dirs': [], -} - -# to add script folder to path just uncomment this line -#modextrapaths = {'PATH': 'scripts'} - -moduleclass = 'bio' diff --git a/b/Bowtie2/Bowtie2-2.2.6-foss-2015b.eb b/b/Bowtie2/Bowtie2-2.2.6-foss-2015b.eb deleted file mode 100644 index 1a33b195..00000000 --- a/b/Bowtie2/Bowtie2-2.2.6-foss-2015b.eb +++ /dev/null @@ -1,55 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# Swiss Institute of Bioinformatics -# Biozentrum - University of Basel -# Modified by: Robert Schmidt -# Ottawa Hospital Research Institute - Bioinformatics Team - -easyblock = 'MakeCp' - -name = 'Bowtie2' -version = '2.2.6' - -homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' -description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads - to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s - of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. - Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, - its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" - -toolchain = {'name': 'foss', 'version': '2015b'} - -sources = ['%(namelower)s-%(version)s-source.zip'] -source_urls = [ - ('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', - 'download')] - -files_to_copy = [(["bowtie2", - "bowtie2-align-l", - "bowtie2-align-s", - "bowtie2-build", - "bowtie2-build-l", - "bowtie2-build-s", - "bowtie2-inspect", - "bowtie2-inspect-l", - "bowtie2-inspect-s"], - 'bin'), - "doc", - "example", - "scripts", - "MANUAL", - "MANUAL.markdown", - "NEWS"] - -sanity_check_paths = { - 'files': [ - "bin/bowtie2-align-l", - "bin/bowtie2-build", - "bin/bowtie2-inspect"], - 'dirs': [], -} - -# to add script folder to path just uncomment this line -#modextrapaths = {'PATH': 'scripts'} - -moduleclass = 'bio' diff --git a/b/Bowtie2/Bowtie2-2.2.6-intel-2015b.eb b/b/Bowtie2/Bowtie2-2.2.6-intel-2015b.eb deleted file mode 100644 index 9a5a7ad6..00000000 --- a/b/Bowtie2/Bowtie2-2.2.6-intel-2015b.eb +++ /dev/null @@ -1,55 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# Swiss Institute of Bioinformatics -# Biozentrum - University of Basel -# Modified by: Robert Schmidt -# Ottawa Hospital Research Institute - Bioinformatics Team - -easyblock = 'MakeCp' - -name = 'Bowtie2' -version = '2.2.6' - -homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' -description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads - to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s - of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. - Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, - its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = ['%(namelower)s-%(version)s-source.zip'] -source_urls = [ - ('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', - 'download')] - -files_to_copy = [(["bowtie2", - "bowtie2-align-l", - "bowtie2-align-s", - "bowtie2-build", - "bowtie2-build-l", - "bowtie2-build-s", - "bowtie2-inspect", - "bowtie2-inspect-l", - "bowtie2-inspect-s"], - 'bin'), - "doc", - "example", - "scripts", - "MANUAL", - "MANUAL.markdown", - "NEWS"] - -sanity_check_paths = { - 'files': [ - "bin/bowtie2-align-l", - "bin/bowtie2-build", - "bin/bowtie2-inspect"], - 'dirs': [], -} - -# to add script folder to path just uncomment this line -#modextrapaths = {'PATH': 'scripts'} - -moduleclass = 'bio' diff --git a/b/Bowtie2/Bowtie2-2.2.7-foss-2015b.eb b/b/Bowtie2/Bowtie2-2.2.7-foss-2015b.eb deleted file mode 100644 index 1d3e2941..00000000 --- a/b/Bowtie2/Bowtie2-2.2.7-foss-2015b.eb +++ /dev/null @@ -1,57 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# Swiss Institute of Bioinformatics -# Biozentrum - University of Basel -# Modified by: Robert Schmidt -# Ottawa Hospital Research Institute - Bioinformatics Team -# Modified by: Adam Huffman -# The Francis Crick Institute - -easyblock = 'MakeCp' - -name = 'Bowtie2' -version = '2.2.7' - -homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' -description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads - to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s - of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. - Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, - its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" - -toolchain = {'name': 'foss', 'version': '2015b'} - -sources = ['%(namelower)s-%(version)s-source.zip'] -source_urls = [ - ('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', - 'download')] - -files_to_copy = [(["bowtie2", - "bowtie2-align-l", - "bowtie2-align-s", - "bowtie2-build", - "bowtie2-build-l", - "bowtie2-build-s", - "bowtie2-inspect", - "bowtie2-inspect-l", - "bowtie2-inspect-s"], - 'bin'), - "doc", - "example", - "scripts", - "MANUAL", - "MANUAL.markdown", - "NEWS"] - -sanity_check_paths = { - 'files': [ - "bin/bowtie2-align-l", - "bin/bowtie2-build", - "bin/bowtie2-inspect"], - 'dirs': [], -} - -# to add script folder to path just uncomment this line -#modextrapaths = {'PATH': 'scripts'} - -moduleclass = 'bio' diff --git a/b/Bowtie2/Bowtie2-2.2.8-foss-2015b.eb b/b/Bowtie2/Bowtie2-2.2.8-foss-2015b.eb deleted file mode 100644 index 7899567a..00000000 --- a/b/Bowtie2/Bowtie2-2.2.8-foss-2015b.eb +++ /dev/null @@ -1,57 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# Swiss Institute of Bioinformatics -# Biozentrum - University of Basel -# Modified by: Robert Schmidt -# Ottawa Hospital Research Institute - Bioinformatics Team -# Modified by: Adam Huffman -# The Francis Crick Institute - -easyblock = 'MakeCp' - -name = 'Bowtie2' -version = '2.2.8' - -homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' -description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads - to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s - of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. - Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, - its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" - -toolchain = {'name': 'foss', 'version': '2015b'} - -sources = ['%(namelower)s-%(version)s-source.zip'] -source_urls = [ - ('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', - 'download')] - -files_to_copy = [(["bowtie2", - "bowtie2-align-l", - "bowtie2-align-s", - "bowtie2-build", - "bowtie2-build-l", - "bowtie2-build-s", - "bowtie2-inspect", - "bowtie2-inspect-l", - "bowtie2-inspect-s"], - 'bin'), - "doc", - "example", - "scripts", - "MANUAL", - "MANUAL.markdown", - "NEWS"] - -sanity_check_paths = { - 'files': [ - "bin/bowtie2-align-l", - "bin/bowtie2-build", - "bin/bowtie2-inspect"], - 'dirs': [], -} - -# to add script folder to path just uncomment this line -#modextrapaths = {'PATH': 'scripts'} - -moduleclass = 'bio' diff --git a/b/Bowtie2/Bowtie2-2.2.8-foss-2016a.eb b/b/Bowtie2/Bowtie2-2.2.8-foss-2016a.eb deleted file mode 100644 index 4bb725d6..00000000 --- a/b/Bowtie2/Bowtie2-2.2.8-foss-2016a.eb +++ /dev/null @@ -1,57 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# Swiss Institute of Bioinformatics -# Biozentrum - University of Basel -# Modified by: Robert Schmidt -# Ottawa Hospital Research Institute - Bioinformatics Team -# Modified by: Adam Huffman -# The Francis Crick Institute - -easyblock = 'MakeCp' - -name = 'Bowtie2' -version = '2.2.8' - -homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' -description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads - to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s - of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. - Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, - its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = ['%(namelower)s-%(version)s-source.zip'] -source_urls = [ - ('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', - 'download')] - -files_to_copy = [(["bowtie2", - "bowtie2-align-l", - "bowtie2-align-s", - "bowtie2-build", - "bowtie2-build-l", - "bowtie2-build-s", - "bowtie2-inspect", - "bowtie2-inspect-l", - "bowtie2-inspect-s"], - 'bin'), - "doc", - "example", - "scripts", - "MANUAL", - "MANUAL.markdown", - "NEWS"] - -sanity_check_paths = { - 'files': [ - "bin/bowtie2-align-l", - "bin/bowtie2-build", - "bin/bowtie2-inspect"], - 'dirs': [], -} - -# to add script folder to path just uncomment this line -#modextrapaths = {'PATH': 'scripts'} - -moduleclass = 'bio' diff --git a/b/Bowtie2/Bowtie2-2.2.9-foss-2016a.eb b/b/Bowtie2/Bowtie2-2.2.9-foss-2016a.eb deleted file mode 100644 index a7e29287..00000000 --- a/b/Bowtie2/Bowtie2-2.2.9-foss-2016a.eb +++ /dev/null @@ -1,57 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# Swiss Institute of Bioinformatics -# Biozentrum - University of Basel -# Modified by: Robert Schmidt -# Ottawa Hospital Research Institute - Bioinformatics Team -# Modified by: Adam Huffman -# The Francis Crick Institute - -easyblock = 'MakeCp' - -name = 'Bowtie2' -version = '2.2.9' - -homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' -description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads - to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s - of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. - Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, - its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = ['%(namelower)s-%(version)s-source.zip'] -source_urls = [ - ('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', - 'download')] - -files_to_copy = [(["bowtie2", - "bowtie2-align-l", - "bowtie2-align-s", - "bowtie2-build", - "bowtie2-build-l", - "bowtie2-build-s", - "bowtie2-inspect", - "bowtie2-inspect-l", - "bowtie2-inspect-s"], - 'bin'), - "doc", - "example", - "scripts", - "MANUAL", - "MANUAL.markdown", - "NEWS"] - -sanity_check_paths = { - 'files': [ - "bin/bowtie2-align-l", - "bin/bowtie2-build", - "bin/bowtie2-inspect"], - 'dirs': [], -} - -# to add script folder to path just uncomment this line -#modextrapaths = {'PATH': 'scripts'} - -moduleclass = 'bio' diff --git a/b/Bullet/Bullet-2.83.7-foss-2016a.eb b/b/Bullet/Bullet-2.83.7-foss-2016a.eb deleted file mode 100644 index 020f21c0..00000000 --- a/b/Bullet/Bullet-2.83.7-foss-2016a.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'Bullet' -version = '2.83.7' - -homepage = "http://bulletphysics.org/" -description = """Bullet professional 3D Game Multiphysics Library provides state - of the art collision detection, soft body and rigid body dynamics.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'usempi': False, 'pic': True} - -source_urls = ['https://github.com/bulletphysics/bullet3/archive/'] -sources = ["%(version)s.tar.gz"] - -builddependencies = [('CMake', '3.5.2')] - -# build shared libraries -configopts = "-DBUILD_SHARED_LIBS=ON" - -sanity_check_paths = { - 'files': [ - 'include/bullet/btBullet%sCommon.h' % - x for x in [ - 'Collision', 'Dynamics']] + [ - 'lib/libBullet%s.%s' % - (x, SHLIB_EXT) for x in [ - 'Collision', 'Dynamics']], 'dirs': [], } - -modextrapaths = {'CPATH': 'include/bullet'} - -moduleclass = 'phys' diff --git a/b/Bullet/Bullet-2.83.7-intel-2016a.eb b/b/Bullet/Bullet-2.83.7-intel-2016a.eb deleted file mode 100644 index 915d29cc..00000000 --- a/b/Bullet/Bullet-2.83.7-intel-2016a.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'Bullet' -version = '2.83.7' - -homepage = "http://bulletphysics.org/" -description = """Bullet professional 3D Game Multiphysics Library provides state - of the art collision detection, soft body and rigid body dynamics.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'usempi': False, 'pic': True} - -source_urls = ['https://github.com/bulletphysics/bullet3/archive/'] -sources = ["%(version)s.tar.gz"] - -builddependencies = [('CMake', '3.5.2')] - -# build shared libraries -configopts = "-DBUILD_SHARED_LIBS=ON" - -sanity_check_paths = { - 'files': [ - 'include/bullet/btBullet%sCommon.h' % - x for x in [ - 'Collision', 'Dynamics']] + [ - 'lib/libBullet%s.%s' % - (x, SHLIB_EXT) for x in [ - 'Collision', 'Dynamics']], 'dirs': [], } - -modextrapaths = {'CPATH': 'include/bullet'} - -moduleclass = 'phys' diff --git a/b/beagle-lib/beagle-lib-2.1.2-foss-2016a.eb b/b/beagle-lib/beagle-lib-2.1.2-foss-2016a.eb deleted file mode 100644 index 3977cb3d..00000000 --- a/b/beagle-lib/beagle-lib-2.1.2-foss-2016a.eb +++ /dev/null @@ -1,35 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'beagle-lib' -version = '2.1.2' -homepage = 'https://github.com/beagle-dev/beagle-lib' -description = """ -beagle-lib is a high-performance library that can perform the core -calculations at the heart of most Bayesian and Maximum Likelihood -phylogenetics packages. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -# https://github.com/beagle-dev/beagle-lib/archive/beagle_release_2_1_2.tar.gz -source_urls = ['https://github.com/beagle-dev/beagle-lib/archive/'] -sources = ['beagle_release_%s.tar.gz' % version.replace('.', '_')] - -dependencies = [('Java', '1.8.0_74', '', True)] - -builddependencies = [('Autotools', '20150215')] - -# parallel build does not work (to test) -parallel = 1 - -preconfigopts = "./autogen.sh && " - -sanity_check_paths = { - 'files': ["include/libhmsbeagle-1/libhmsbeagle/%s" % includefile - for includefile in ["beagle.h", "platform.h"]] + - ["lib/libhmsbeagle%s.so" % libfile - for libfile in ["-cpu", "-cpu-sse", "-jni", ""]], - 'dirs': [] -} - -moduleclass = 'numlib' diff --git a/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb b/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb deleted file mode 100644 index cc7febf4..00000000 --- a/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb +++ /dev/null @@ -1,36 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'beagle-lib' -# revision r1261 -version = '20141202' - -homepage = 'http://code.google.com/p/beagle-lib/' -description = """beagle-lib is a high-performance library that can perform the core - calculations at the heart of most Bayesian and Maximum Likelihood - phylogenetics packages.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -# there is no tarball provided, only SVN checkout through: -# svn checkout http://beagle-lib.googlecode.com/svn/trunk/ beagle-lib -sources = [SOURCE_TGZ] - -dependencies = [ - ('Java', '1.8.0_31', '', True), - ('Autoconf', '2.69') -] - -preconfigopts = './autogen.sh && ' - -# parallel build does not work -parallel = 1 - -sanity_check_paths = { - 'files': ["include/libhmsbeagle-1/libhmsbeagle/%s" % includefile - for includefile in ["beagle.h", "platform.h"]] + - ["lib/libhmsbeagle%s.so" % libfile - for libfile in ["-cpu", "-cpu-sse", "-jni", ""]], - 'dirs': [] -} - -moduleclass = 'numlib' diff --git a/c/CASMcode/CASMcode-0.2.1-foss-2016a-Python-2.7.13.eb b/c/CASMcode/CASMcode-0.2.1-foss-2016a-Python-2.7.13.eb deleted file mode 100644 index d65cf844..00000000 --- a/c/CASMcode/CASMcode-0.2.1-foss-2016a-Python-2.7.13.eb +++ /dev/null @@ -1,37 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CASMcode' -version = "0.2.1" - -homepage = 'CASMcode' -description = """CASM (https://github.com/prisms-center/CASMcode) is an open source software -package designed to perform first-principles statistical mechanical studies of multi-component -crystalline solids. CASM interfaces with first-principles electronic structure codes, automates -the construction and parameterization of effective Hamiltonians and subsequently builds highly -optimized (kinetic) Monte Carlo codes to predict finite-temperature thermodynamic and kinetic -properties. CASM uses group theoretic techniques that take full advantage of crystal symmetry -in order to rigorously construct effective Hamiltonians for almost arbitrary degrees of -freedom in crystalline solids. This includes cluster expansions for configurational disorder -in multi-component solids and lattice-dynamical effective Hamiltonians for vibrational -degrees of freedom involved in structural phase transitions.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [ - 'https://github.com/prisms-center/CASMcode/releases/download/v%(version)s/'] -sources = ['casm-v%(version)s.tar.gz'] - -dependencies = [ - ('Boost', '1.61.0'), - ('Python', '2.7.13', '', True), - ('SCons', '2.5.1', '-Python-2.7.13', True) -] - -configopts = '--with-boost=$EBROOTBOOST' - -sanity_check_paths = { - 'files': [], - 'dirs': ['bin'], -} - -moduleclass = 'phys' diff --git a/c/CFITSIO/CFITSIO-3.37-intel-2015a.eb b/c/CFITSIO/CFITSIO-3.37-intel-2015a.eb deleted file mode 100644 index 08e0bf17..00000000 --- a/c/CFITSIO/CFITSIO-3.37-intel-2015a.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CFITSIO' -version = '3.37' - -homepage = 'http://heasarc.gsfc.nasa.gov/fitsio/' -description = """CFITSIO is a library of C and Fortran subroutines for reading and writing data files in -FITS (Flexible Image Transport System) data format.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'optarch': True, 'pic': True} - -srcversion = '%s0' % version.replace('.', '') -source_urls = ['ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/'] -sources = ['%%(namelower)s%s.tar.gz' % srcversion] - -sanity_check_paths = { - 'files': ["lib/libcfitsio.a"], - 'dirs': ["include"], -} - -moduleclass = 'lib' diff --git a/c/CFITSIO/CFITSIO-3.38-foss-2016a.eb b/c/CFITSIO/CFITSIO-3.38-foss-2016a.eb deleted file mode 100644 index 654a6284..00000000 --- a/c/CFITSIO/CFITSIO-3.38-foss-2016a.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CFITSIO' -version = '3.38' - -homepage = 'http://heasarc.gsfc.nasa.gov/fitsio/' -description = """CFITSIO is a library of C and Fortran subroutines for reading and writing data files in -FITS (Flexible Image Transport System) data format.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'optarch': True, 'pic': True} - -srcversion = '%s0' % version.replace('.', '') -source_urls = ['ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/'] -sources = ['%%(namelower)s%s.tar.gz' % srcversion] - -sanity_check_paths = { - 'files': ["lib/libcfitsio.a"], - 'dirs': ["include"], -} - -moduleclass = 'lib' diff --git a/c/CFITSIO/CFITSIO-3.38-intel-2016a.eb b/c/CFITSIO/CFITSIO-3.38-intel-2016a.eb deleted file mode 100644 index 6291c971..00000000 --- a/c/CFITSIO/CFITSIO-3.38-intel-2016a.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CFITSIO' -version = '3.38' - -homepage = 'http://heasarc.gsfc.nasa.gov/fitsio/' -description = """CFITSIO is a library of C and Fortran subroutines for reading and writing data files in -FITS (Flexible Image Transport System) data format.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'optarch': True, 'pic': True} - -srcversion = '%s0' % version.replace('.', '') -source_urls = ['ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/'] -sources = ['%%(namelower)s%s.tar.gz' % srcversion] - -sanity_check_paths = { - 'files': ["lib/libcfitsio.a"], - 'dirs': ["include"], -} - -moduleclass = 'lib' diff --git a/c/CMake/CMake-3.0.0-intel-2015b.eb b/c/CMake/CMake-3.0.0-intel-2015b.eb deleted file mode 100644 index c108dae7..00000000 --- a/c/CMake/CMake-3.0.0-intel-2015b.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.0.0' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [('ncurses', '5.9')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.2.3-foss-2015a.eb b/c/CMake/CMake-3.2.3-foss-2015a.eb deleted file mode 100644 index e6f905f4..00000000 --- a/c/CMake/CMake-3.2.3-foss-2015a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.2.3' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'foss', 'version': '2015a'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '5.9'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1k'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.2.3-intel-2015a.eb b/c/CMake/CMake-3.2.3-intel-2015a.eb deleted file mode 100644 index 5e1447f0..00000000 --- a/c/CMake/CMake-3.2.3-intel-2015a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.2.3' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '5.9'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1k'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.2.3-intel-2015b.eb b/c/CMake/CMake-3.2.3-intel-2015b.eb deleted file mode 100644 index 13531598..00000000 --- a/c/CMake/CMake-3.2.3-intel-2015b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.2.3' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '5.9'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1k'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.3.1-foss-2015g.eb b/c/CMake/CMake-3.3.1-foss-2015g.eb deleted file mode 100644 index 5f9e5106..00000000 --- a/c/CMake/CMake-3.3.1-foss-2015g.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.3.1' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [('ncurses', '5.9')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.3.1-foss-2016a.eb b/c/CMake/CMake-3.3.1-foss-2016a.eb deleted file mode 100644 index 4fc6dffc..00000000 --- a/c/CMake/CMake-3.3.1-foss-2016a.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.3.1' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [('ncurses', '6.0')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.3.1-intel-2015a.eb b/c/CMake/CMake-3.3.1-intel-2015a.eb deleted file mode 100644 index b8e7064f..00000000 --- a/c/CMake/CMake-3.3.1-intel-2015a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.3.1' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '5.9'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1p'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.3.2-intel-2015b.eb b/c/CMake/CMake-3.3.2-intel-2015b.eb deleted file mode 100644 index ba3ca2e1..00000000 --- a/c/CMake/CMake-3.3.2-intel-2015b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.3.2' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '5.9'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1p'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.4.0-intel-2015b.eb b/c/CMake/CMake-3.4.0-intel-2015b.eb deleted file mode 100644 index 21bbc293..00000000 --- a/c/CMake/CMake-3.4.0-intel-2015b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.4.0' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '5.9'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1p'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.4.1-foss-2015a.eb b/c/CMake/CMake-3.4.1-foss-2015a.eb deleted file mode 100644 index 4f9c1dcf..00000000 --- a/c/CMake/CMake-3.4.1-foss-2015a.eb +++ /dev/null @@ -1,28 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.4.1' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'foss', 'version': '2015a'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '5.9'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.4.1-foss-2015b.eb b/c/CMake/CMake-3.4.1-foss-2015b.eb deleted file mode 100644 index 5702e997..00000000 --- a/c/CMake/CMake-3.4.1-foss-2015b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.4.1' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'foss', 'version': '2015b'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '5.9'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1p'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.4.1-foss-2016a.eb b/c/CMake/CMake-3.4.1-foss-2016a.eb deleted file mode 100644 index 87dc8ebe..00000000 --- a/c/CMake/CMake-3.4.1-foss-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.4.1' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1p'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.4.1-intel-2015b.eb b/c/CMake/CMake-3.4.1-intel-2015b.eb deleted file mode 100644 index 638514df..00000000 --- a/c/CMake/CMake-3.4.1-intel-2015b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.4.1' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '5.9'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1p'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.4.1-intel-2016.02-GCC-4.9.eb b/c/CMake/CMake-3.4.1-intel-2016.02-GCC-4.9.eb deleted file mode 100644 index df5823de..00000000 --- a/c/CMake/CMake-3.4.1-intel-2016.02-GCC-4.9.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.4.1' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'intel', 'version': '2016.02-GCC-4.9'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1p'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.4.1-intel-2016a.eb b/c/CMake/CMake-3.4.1-intel-2016a.eb deleted file mode 100644 index db841bba..00000000 --- a/c/CMake/CMake-3.4.1-intel-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.4.1' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1p'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.4.3-foss-2016a.eb b/c/CMake/CMake-3.4.3-foss-2016a.eb deleted file mode 100644 index e6beb92b..00000000 --- a/c/CMake/CMake-3.4.3-foss-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.4.3' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1p'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.4.3-foss-2016b.eb b/c/CMake/CMake-3.4.3-foss-2016b.eb deleted file mode 100644 index cfb29da8..00000000 --- a/c/CMake/CMake-3.4.3-foss-2016b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.4.3' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1p'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.4.3-intel-2016a.eb b/c/CMake/CMake-3.4.3-intel-2016a.eb deleted file mode 100644 index 31b70f1b..00000000 --- a/c/CMake/CMake-3.4.3-intel-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.4.3' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1p'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.5.1-intel-2016a.eb b/c/CMake/CMake-3.5.1-intel-2016a.eb deleted file mode 100644 index a7044137..00000000 --- a/c/CMake/CMake-3.5.1-intel-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.5.1' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1s'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.5.2-foss-2016a.eb b/c/CMake/CMake-3.5.2-foss-2016a.eb deleted file mode 100644 index 9075c094..00000000 --- a/c/CMake/CMake-3.5.2-foss-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.5.2' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1s'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.5.2-foss-2016b.eb b/c/CMake/CMake-3.5.2-foss-2016b.eb deleted file mode 100644 index 42e9b3b3..00000000 --- a/c/CMake/CMake-3.5.2-foss-2016b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.5.2' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1s'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.5.2-intel-2016a.eb b/c/CMake/CMake-3.5.2-intel-2016a.eb deleted file mode 100644 index 6d07f31e..00000000 --- a/c/CMake/CMake-3.5.2-intel-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.5.2' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1s'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.5.2-intel-2016b.eb b/c/CMake/CMake-3.5.2-intel-2016b.eb deleted file mode 100644 index b68274e5..00000000 --- a/c/CMake/CMake-3.5.2-intel-2016b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.5.2' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1s'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.6.1-foss-2016b.eb b/c/CMake/CMake-3.6.1-foss-2016b.eb deleted file mode 100644 index c1386c78..00000000 --- a/c/CMake/CMake-3.6.1-foss-2016b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.6.1' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1s'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.6.1-intel-2016b.eb b/c/CMake/CMake-3.6.1-intel-2016b.eb deleted file mode 100644 index 40d915d1..00000000 --- a/c/CMake/CMake-3.6.1-intel-2016b.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.6.1' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -patches = ['%(name)s-%(version)s-use-gnu11.patch'] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1s'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.6.2-foss-2016b.eb b/c/CMake/CMake-3.6.2-foss-2016b.eb deleted file mode 100644 index adb07244..00000000 --- a/c/CMake/CMake-3.6.2-foss-2016b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.6.2' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.2j'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.6.2-intel-2016b.eb b/c/CMake/CMake-3.6.2-intel-2016b.eb deleted file mode 100644 index b6e49683..00000000 --- a/c/CMake/CMake-3.6.2-intel-2016b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.6.2' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.2j'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.7.1-foss-2016b.eb b/c/CMake/CMake-3.7.1-foss-2016b.eb deleted file mode 100644 index e459f784..00000000 --- a/c/CMake/CMake-3.7.1-foss-2016b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.7.1' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.2j'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CMake/CMake-3.7.1-intel-2016b.eb b/c/CMake/CMake-3.7.1-intel-2016b.eb deleted file mode 100644 index 0464c902..00000000 --- a/c/CMake/CMake-3.7.1-intel-2016b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'CMake' -version = '3.7.1' - -homepage = 'http://www.cmake.org' -description = """CMake, the cross-platform, open-source build system. - CMake is a family of tools designed to build, test and package software.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '-- -DCMAKE_USE_OPENSSL=1' - -dependencies = [ - ('ncurses', '6.0'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.2j'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/c/CORALbenchmark/CORALbenchmark-1.00-foss-2016a.eb b/c/CORALbenchmark/CORALbenchmark-1.00-foss-2016a.eb deleted file mode 100644 index 613b4b6f..00000000 --- a/c/CORALbenchmark/CORALbenchmark-1.00-foss-2016a.eb +++ /dev/null @@ -1,16 +0,0 @@ -easyblock = 'Toolchain' - -name = 'CORALbenchmark' -version = '1.00' - -homepage = 'https://asc.llnl.gov/CORAL-benchmarks' -description = 'Benchmark Codes' - -toolchain = {'name': 'foss', 'version': '2016a'} - -dependencies = [ - ('QBOX', 'r140b'), - ('LSMS', '3_rev237'), -] - -moduleclass = 'tools' diff --git a/c/Caffe/Caffe-1.0-foss-2016a-CUDA-8.0.44-Python-2.7.13.eb b/c/Caffe/Caffe-1.0-foss-2016a-CUDA-8.0.44-Python-2.7.13.eb deleted file mode 100644 index 980e72e3..00000000 --- a/c/Caffe/Caffe-1.0-foss-2016a-CUDA-8.0.44-Python-2.7.13.eb +++ /dev/null @@ -1,57 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'Caffe' -version = '1.0' - -cudaversion = '8.0.44' -versionsuffix = '-CUDA-%s-Python-%%(pyver)s' % cudaversion - -homepage = 'https://github.com/BVLC/caffe' -description = """ -Caffe is a deep learning framework made with expression, speed, -and modularity in mind. It is developed by the Berkeley Vision -and Learning Center (BVLC) and community contributors. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'optarch': True, 'pic': True} - -sources = ['%(version)s.tar.gz'] -source_urls = ['https://github.com/BVLC/caffe/archive/'] - -builddependencies = [ - ('CMake', '3.8.1', '', True), -] - -protobuf_ver = '3.2.0' - -dependencies = [ - ('glog', '0.3.4', '', True), - ('gflags', '2.1.2', '', True), - ('OpenCV', '3.1.0', '', True), - ('CUDA', cudaversion, '', True), - ('cuDNN', '5.1', '-CUDA-%s' % cudaversion, True), - ('LMDB', '0.9.18', '', True), - ('LevelDB', '1.18', '', True), - ('snappy', '1.1.3', '', True), - ('protobuf', protobuf_ver), - # ('protobuf-python', protobuf_ver, '-Python-%(pyver)s'), - ('HDF5', '1.8.16', '-serial'), - ('Boost', '1.63.0', '-Python-%(pyver)s'), - ('Python', '2.7.13', '', True), - ('scikit-image', '0.12.3', '-Python-%(pyver)s', True) -] - -configopts = '-DBLAS=open' - -modextrapaths = {'PYTHONPATH': ['python']} - -sanity_check_paths = { - 'files': ['bin/caffe'] + - ['include/caffe/proto/caffe.pb.h'], - 'dirs': [], -} - -sanity_check_commands = [('python', "-c 'import caffe'")] - -moduleclass = 'devel' diff --git a/c/Cantera/Cantera-2.2.1-intel-2016b-Python-2.7.12.eb b/c/Cantera/Cantera-2.2.1-intel-2016b-Python-2.7.12.eb deleted file mode 100644 index 4d9fc5e7..00000000 --- a/c/Cantera/Cantera-2.2.1-intel-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,44 +0,0 @@ -easyblock = 'SCons' - -name = 'Cantera' -version = '2.2.1' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://github.com/Cantera/cantera' -description = """Chemical kinetics, thermodynamics, and transport tool suite""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = ['https://github.com/Cantera/cantera/archive/'] -sources = ['v%(version)s.tar.gz'] - -dependencies = [ - ('Python', '2.7.12'), - ('Boost', '1.61.0', versionsuffix), - ('SUNDIALS', '2.6.2'), -] -builddependencies = [ - ('SCons', '2.5.0', versionsuffix), - ('3to2', '1.1.1', versionsuffix), -] - -common_opts = 'env_vars=all CC="$CC" CXX="$CXX" blas_lapack_libs=mkl_rt blas_lapack_dir=$BLAS_LAPACK_LIB_DIR' -common_opts += ' sundials_include=$EBROOTSUNDIALS/include sundials_libdir=$EBROOTSUNDIALS/lib' -buildopts = 'build ' + common_opts -runtest = 'test ' + common_opts -buildopts = 'install ' + common_opts -prefix_arg = 'prefix=' - -modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} - -sanity_check_paths = { - 'files': ['bin/mixmaster'], - 'dirs': [ - 'include/cantera', - 'lib/pkgconfig', - 'lib/python%(pyshortver)s/site-packages'], -} - -sanity_check_commands = [('python', "-c 'import cantera'")] - -moduleclass = 'chem' diff --git a/c/Commet/Commet-20150415-foss-2016a-Python-2.7.11.eb b/c/Commet/Commet-20150415-foss-2016a-Python-2.7.11.eb deleted file mode 100644 index 2f204293..00000000 --- a/c/Commet/Commet-20150415-foss-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,41 +0,0 @@ -easyblock = 'MakeCp' - -name = 'Commet' -version = '20150415' -commit = '4ef0705' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://colibread.inria.fr/software/commet/' -description = """ COMMET ("COmpare Multiple METagenomes") provides a global similarity overview between all datasets of - a large metagenomic project. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://github.com/pierrepeterlongo/commet/archive'] -sources = ['%s.tar.gz' % commit] - -checksums = ['19cba09ca7a92eaed75ed6af820d9451'] - -dependencies = [ - ('Python', '2.7.11'), -] - -files_to_copy = ["bin", "doc", "include", - "ABCDE_bench", (["Commet.py"], 'bin')] - -sanity_check_paths = { - 'files': [ - 'bin/%s' % - binfile for binfile in [ - 'Commet.py', - 'bvop', - 'compare_reads', - 'extract_reads', - 'filter_reads', - 'index_and_search']], - 'dirs': [ - 'doc', - 'include']} - -moduleclass = 'bio' diff --git a/c/CrossTalkZ/CrossTalkZ-1.4-foss-2016a.eb b/c/CrossTalkZ/CrossTalkZ-1.4-foss-2016a.eb deleted file mode 100644 index bf654609..00000000 --- a/c/CrossTalkZ/CrossTalkZ-1.4-foss-2016a.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'CrossTalkZ' -version = '1.4' - -homepage = 'http://sonnhammer.sbc.su.se/download/software/CrossTalkZ/' -description = """ -CrossTalkZ is a statistical method and software to assess the significance of crosstalk enrichment -between pairs of gene or protein groups in large biological networks. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'usempi': True, 'pic': True} - -source_urls = [ - 'http://sonnhammer.sbc.su.se/download/software/CrossTalkZ/' -] -sources = ['%(name)s_%(version)s.tgz'] - -dependencies = [('Boost', '1.60.0')] - -builddependencies = [('CMake', '3.4.3',)] - - -start_dir = 'src' - -configopts = " -DBoost_NO_BOOST_CMAKE=ON -DBoost_NO_SYSTEM_PATHS=ON -DBOOST_ROOT=$EBROOTBOOST" - -sanity_check_paths = { - 'files': ['bin/CrossTalkZ'], - 'dirs': [''], -} - -moduleclass = 'bio' diff --git a/c/Cython/Cython-0.24.1-foss-2016a-Python-2.7.11.eb b/c/Cython/Cython-0.24.1-foss-2016a-Python-2.7.11.eb deleted file mode 100644 index a8de95af..00000000 --- a/c/Cython/Cython-0.24.1-foss-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'Cython' -version = '0.24.1' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://pypi.python.org/pypi/Cython/' -description = """The Cython language makes writing C extensions for the Python language as easy as Python itself. -Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [PYPI_SOURCE] -sources = [SOURCE_TAR_GZ] - -dependencies = [('Python', '2.7.11')] - -cythonlibdir = 'lib/python%(pyshortver)s/site-packages/Cython-%(version)s-py%(pyshortver)s-linux-x86_64.egg' -sanity_check_paths = { - 'files': [ - 'bin/cygdb', - 'bin/cython', - '%s/%%(namelower)s.py' % - cythonlibdir], - 'dirs': [ - cythonlibdir + - '/%(name)s']} - -moduleclass = 'lang' diff --git a/c/cURL/cURL-7.37.1-intel-2015b.eb b/c/cURL/cURL-7.37.1-intel-2015b.eb deleted file mode 100644 index 9165997d..00000000 --- a/c/cURL/cURL-7.37.1-intel-2015b.eb +++ /dev/null @@ -1,28 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'cURL' -version = '7.37.1' - -homepage = 'http://curl.haxx.se' -description = """libcurl is a free and easy-to-use client-side URL transfer library, - supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, - POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports - SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, - proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, - Kerberos), file transfer resume, http proxy tunneling and more.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://curl.haxx.se/download/'] - -# dependencies = [('OpenSSL', '1.0.1i')] # OS dependency should be -# preferred for security reasons -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], - 'dirs': ['lib/pkgconfig'], -} - -moduleclass = 'tools' diff --git a/c/cclib/cclib-1.5-foss-2016b-Python-3.5.2.eb b/c/cclib/cclib-1.5-foss-2016b-Python-3.5.2.eb deleted file mode 100644 index e9d86b5a..00000000 --- a/c/cclib/cclib-1.5-foss-2016b-Python-3.5.2.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'cclib' -version = '1.5' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://cclib.github.io/' -description = """cclib is a Python library that provides parsers for computational chemistry log files. - It alsoprovides a platform to implement algorithms in a package-independent manner. -""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = [ - 'https://github.com/cclib/cclib/releases/download/v%(version)s/'] -sources = ['%(name)s-%(version)s.post1.tar.gz'] - -dependencies = [ - ('Python', '3.5.2'), # This contains numpy as extension needed for cclib -] - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages/%(name)s'], -} - -moduleclass = 'tools' diff --git a/c/ctffind/ctffind-4.0.17-intel-2015b.eb b/c/ctffind/ctffind-4.0.17-intel-2015b.eb deleted file mode 100644 index 8e893bc4..00000000 --- a/c/ctffind/ctffind-4.0.17-intel-2015b.eb +++ /dev/null @@ -1,38 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# sciCORE - University of Basel -# SIB Swiss Institute of Bioinformatics - -easyblock = 'MakeCp' - -name = 'ctffind' -version = '4.0.17' - -homepage = 'http://grigoriefflab.janelia.org/ctffind4' -description = """program for finding CTFs of electron micrographs""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'openmp': True} - -source_urls = ['http://grigoriefflab.janelia.org/sites/default/files/'] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [('GSL', '1.16')] - -# when running ./configure in the root folder it fails. -# application doesn't provide a 'make install' -prebuildopts = 'mkdir build && cd build && ' -prebuildopts += ' ../configure --enable-static --disable-debug --enable-optimisations --enable-openmp FC=${FC} F77=${F77} && ' - -files_to_copy = [(['build/ctffind'], 'bin'), 'doc', 'scripts'] - -parallel = 1 - -sanity_check_paths = { - 'files': ['bin/ctffind'], - 'dirs': [], -} - -modloadmsg = """Define OMP_NUM_THREADS or use the command line option --omp-num-threads=N when using this application""" - -moduleclass = 'bio' diff --git a/c/cutadapt/cutadapt-1.9.1-foss-2016a-Python-2.7.11.eb b/c/cutadapt/cutadapt-1.9.1-foss-2016a-Python-2.7.11.eb deleted file mode 100644 index 99d5dfa4..00000000 --- a/c/cutadapt/cutadapt-1.9.1-foss-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,32 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# Swiss Institute of Bioinformatics (SIB) -# Biozentrum - University of Basel -# Author: Adam Huffman -# The Francis Crick Institute - -easyblock = "PythonPackage" - -name = 'cutadapt' -version = '1.9.1' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://opensource.scilifelab.se/projects/cutadapt/' -description = """ Cutadapt finds and removes adapter sequences, primers, poly-A tails and - other types of unwanted sequence from your high-throughput sequencing reads. """ - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [PYPI_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [ - ('Python', '2.7.11'), -] - -sanity_check_paths = { - 'files': ['bin/cutadapt'], - 'dirs': ['lib/python%(pyshortver)s/site-packages/cutadapt/'], -} - -moduleclass = 'bio' diff --git a/d/DB/DB-6.2.23-foss-2016a.eb b/d/DB/DB-6.2.23-foss-2016a.eb deleted file mode 100644 index 1b4964b4..00000000 --- a/d/DB/DB-6.2.23-foss-2016a.eb +++ /dev/null @@ -1,20 +0,0 @@ -name = 'DB' -version = '6.2.23' - -homepage = 'http://www.oracle.com/technetwork/products/berkeleydb' -description = """Berkeley DB enables the development of custom data management solutions, - without the overhead traditionally associated with such custom projects.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -# download via -# http://www.oracle.com/technetwork/products/berkeleydb/downloads/, -# requires registration -sources = [SOURCELOWER_TAR_GZ] - -sanity_check_paths = { - 'files': ["include/db.h"], - 'dirs': [], -} - -moduleclass = 'tools' diff --git a/d/DBD-mysql/DBD-mysql-4.032-intel-2016a-Perl-5.22.2.eb b/d/DBD-mysql/DBD-mysql-4.032-intel-2016a-Perl-5.22.2.eb deleted file mode 100644 index 496fa4f0..00000000 --- a/d/DBD-mysql/DBD-mysql-4.032-intel-2016a-Perl-5.22.2.eb +++ /dev/null @@ -1,37 +0,0 @@ -easyblock = 'PerlModule' - -name = 'DBD-mysql' -version = '4.032' -versionsuffix = '-Perl-%(perlver)s' - -homepage = 'http://search.cpan.org/~capttofu/DBD-mysql-%(version)s/' -description = """Perl binding for MySQL""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['http://cpan.metacpan.org/authors/id/C/CA/CAPTTOFU/'] -sources = [SOURCE_TAR_GZ] - -dependencies = [ - ('Perl', '5.22.2'), - ('MariaDB', '10.1.13'), - ('zlib', '1.2.8'), - # OS dependency should be preferred if the os version is more recent then this version - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1q'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# force static linking of libmysqlclient to dance around problem with -# unresolved symbols -configopts = '--libs="-L$EBROOTMARIADB/lib -Wl,-Bstatic -lmysqlclient -Wl,-Bdynamic -lpthread -lz -lrt -lssl -lcrypto"' - -options = {'modulename': 'DBD::mysql'} - -sanity_check_paths = { - 'files': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/DBD/mysql.pm'], - 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/DBD/mysql'], -} - -moduleclass = 'data' diff --git a/d/DBD-mysql/DBD-mysql-4.033-intel-2016b-Perl-5.24.0.eb b/d/DBD-mysql/DBD-mysql-4.033-intel-2016b-Perl-5.24.0.eb deleted file mode 100644 index 3e8b82d9..00000000 --- a/d/DBD-mysql/DBD-mysql-4.033-intel-2016b-Perl-5.24.0.eb +++ /dev/null @@ -1,37 +0,0 @@ -easyblock = 'PerlModule' - -name = 'DBD-mysql' -version = '4.033' -versionsuffix = '-Perl-%(perlver)s' - -homepage = 'http://search.cpan.org/~capttofu/DBD-mysql-%(version)s/' -description = """Perl binding for MySQL""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = ['http://cpan.metacpan.org/authors/id/C/CA/CAPTTOFU/'] -sources = [SOURCE_TAR_GZ] - -dependencies = [ - ('Perl', '5.24.0'), - ('MariaDB', '10.1.17'), - ('zlib', '1.2.8'), - # OS dependency should be preferred if the os version is more recent then this version - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.1q'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# force static linking of libmysqlclient to dance around problem with -# unresolved symbols -configopts = '--libs="-L$EBROOTMARIADB/lib -Wl,-Bstatic -lmysqlclient -Wl,-Bdynamic -lpthread -lz -lrt -lssl -lcrypto"' - -options = {'modulename': 'DBD::mysql'} - -sanity_check_paths = { - 'files': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/DBD/mysql.pm'], - 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/DBD/mysql'], -} - -moduleclass = 'data' diff --git a/d/DB_File/DB_File-1.835-foss-2016a-Perl-5.22.1.eb b/d/DB_File/DB_File-1.835-foss-2016a-Perl-5.22.1.eb deleted file mode 100644 index 03f4831a..00000000 --- a/d/DB_File/DB_File-1.835-foss-2016a-Perl-5.22.1.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'PerlModule' - -name = 'DB_File' -version = '1.835' -versionsuffix = '-Perl-%(perlver)s' - -homepage = 'http://perldoc.perl.org/DB_File.html' -description = """Perl5 access to Berkeley DB version 1.x.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://www.cpan.org/modules/by-module/DB_File/PMQS'] -sources = [SOURCE_TAR_GZ] - -dependencies = [ - ('Perl', '5.22.1'), - ('DB', '6.2.23'), -] - -preconfigopts = 'env DB_FILE_INCLUDE="$EBROOTDB/include" DB_FILE_LIB="$EBROOTDB/lib" ' - -sanity_check_paths = { - 'files': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/DB_File.pm'], - 'dirs': [], -} - -moduleclass = 'data' diff --git a/d/DBus/DBus-1.10.12-intel-2016b.eb b/d/DBus/DBus-1.10.12-intel-2016b.eb deleted file mode 100644 index 257e5242..00000000 --- a/d/DBus/DBus-1.10.12-intel-2016b.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'DBus' -version = '1.10.12' - -homepage = 'http://dbus.freedesktop.org/doc/dbus-glib' -description = """D-Bus is a message bus system, a simple way for applications to talk - to one another. In addition to interprocess communication, D-Bus helps - coordinate process lifecycle; it makes it simple and reliable to code - a "single instance" application or daemon, and to launch applications - and daemons on demand when their services are needed.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = ['http://dbus.freedesktop.org/releases/dbus'] -sources = [SOURCELOWER_TAR_GZ] - -sanity_check_paths = { - 'files': [ - 'bin/dbus-%s' % - x for x in [ - 'cleanup-sockets', - 'daemon', - 'launch', - 'monitor', - 'run-session', - 'send', - 'uuidgen']] + - [ - 'lib/libdbus-1.%s' % - x for x in [ - 'a', - SHLIB_EXT]], - 'dirs': [ - 'include', - 'share']} - -moduleclass = 'devel' diff --git a/d/DBus/DBus-1.10.8-foss-2016a.eb b/d/DBus/DBus-1.10.8-foss-2016a.eb deleted file mode 100644 index e0a7c74d..00000000 --- a/d/DBus/DBus-1.10.8-foss-2016a.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'DBus' -version = '1.10.8' - -homepage = 'http://dbus.freedesktop.org/doc/dbus-glib' -description = """D-Bus is a message bus system, a simple way for applications to talk - to one another. In addition to interprocess communication, D-Bus helps - coordinate process lifecycle; it makes it simple and reliable to code - a "single instance" application or daemon, and to launch applications - and daemons on demand when their services are needed.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://dbus.freedesktop.org/releases/dbus'] -sources = [SOURCELOWER_TAR_GZ] - -sanity_check_paths = { - 'files': [ - 'bin/dbus-%s' % - x for x in [ - 'cleanup-sockets', - 'daemon', - 'launch', - 'monitor', - 'run-session', - 'send', - 'uuidgen']] + - [ - 'lib/libdbus-1.%s' % - x for x in [ - 'a', - SHLIB_EXT]], - 'dirs': [ - 'include', - 'share']} - -moduleclass = 'devel' diff --git a/d/DBus/DBus-1.10.8-intel-2016a.eb b/d/DBus/DBus-1.10.8-intel-2016a.eb deleted file mode 100644 index d494f82b..00000000 --- a/d/DBus/DBus-1.10.8-intel-2016a.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'DBus' -version = '1.10.8' - -homepage = 'http://dbus.freedesktop.org/doc/dbus-glib' -description = """D-Bus is a message bus system, a simple way for applications to talk - to one another. In addition to interprocess communication, D-Bus helps - coordinate process lifecycle; it makes it simple and reliable to code - a "single instance" application or daemon, and to launch applications - and daemons on demand when their services are needed.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['http://dbus.freedesktop.org/releases/dbus'] -sources = [SOURCELOWER_TAR_GZ] - -sanity_check_paths = { - 'files': [ - 'bin/dbus-%s' % - x for x in [ - 'cleanup-sockets', - 'daemon', - 'launch', - 'monitor', - 'run-session', - 'send', - 'uuidgen']] + - [ - 'lib/libdbus-1.%s' % - x for x in [ - 'a', - SHLIB_EXT]], - 'dirs': [ - 'include', - 'share']} - -moduleclass = 'devel' diff --git a/d/DFT-D3/DFT-D3-3.1.1-intel-2015a.eb b/d/DFT-D3/DFT-D3-3.1.1-intel-2015a.eb deleted file mode 100644 index 99e680c2..00000000 --- a/d/DFT-D3/DFT-D3-3.1.1-intel-2015a.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'MakeCp' - -name = 'DFT-D3' -version = '3.1.1' - -homepage = 'http://www.thch.uni-bonn.de/tc/index.php?section=downloads&subsection=DFT-D3&lang=english' -description = """DFT-D3 implements a dispersion correction for density functionals, Hartree-Fock and semi-empirical quantum chemical methods.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -source_urls = ['http://www.thch.uni-bonn.de/tc/downloads/%(name)s/data'] -# Note that the DFT-D3 tarball is named as "dftd3.tgz" with no version -# numbering. Also, the authors are prone (alas) to stealth upgrades, so that two -# tarballs with the same version number can have different checksums. For this -# reason, it is suggested to manually download and rename the tarball. The -# checksum may also need updating from time to time. -# Checksum last updated: 15 April 2016 -# Date tarball was reported to have been modified: 11 January 2016 -sources = ['dftd3-%(version)s.tgz'] -checksums = [('md5', 'c9d6a92c43bb2ba71ad75f388fdce216')] - -files_to_copy = [(['dftd3'], 'bin'), (['man.pdf'], 'doc')] - -sanity_check_paths = { - 'files': ['bin/dftd3'], - 'dirs': [], -} - -moduleclass = 'chem' diff --git a/d/DIAL/DIAL-2011.06.06-foss-2016a.eb b/d/DIAL/DIAL-2011.06.06-foss-2016a.eb deleted file mode 100644 index b9b7a241..00000000 --- a/d/DIAL/DIAL-2011.06.06-foss-2016a.eb +++ /dev/null @@ -1,49 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'DIAL' -version = '2011.06.06' - -homepage = 'http://www.bx.psu.edu/miller_lab/' -description = """DIAL (De novo Identification of Alleles) is a collection of programs - to automate the discovery of alleles for a species where we lack a reference sequence. - The SNPs/alleles are specifically selected for a low error rate in genotyping assays. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://www.bx.psu.edu/miller_lab/dist/'] - -patches = ['DIAL-%(version)s_Makefile.in.patch'] - -dependencies = [ - ('LASTZ', '1.02.00'), -] - -binaries = [ - 'assemble', - 'assemble1', - 'assemble_illumina', - 'build_sff_index', - 'convertFastqFasta', - 'cull_components', - 'DIAL', - 'filter', - 'filter_clusters', - 'fish_clusters', - 'make_template', - 'masker', - 'partition', - 'remove_clones', - 'remove_clusters', - 'update', - 'update_clusters', - 'update_status', -] - -sanity_check_paths = { - 'files': ['bin/%s' % binfile for binfile in binaries], - 'dirs': ['bin'] -} - -moduleclass = 'bio' diff --git a/d/Doxygen/Doxygen-1.8.7-intel-2015b.eb b/d/Doxygen/Doxygen-1.8.7-intel-2015b.eb deleted file mode 100644 index 004a66ef..00000000 --- a/d/Doxygen/Doxygen-1.8.7-intel-2015b.eb +++ /dev/null @@ -1,18 +0,0 @@ -name = 'Doxygen' -version = '1.8.7' - -homepage = 'http://www.doxygen.org' -description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, - IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = ['%(namelower)s-%(version)s.src.tar.gz'] -source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] - -builddependencies = [ - ('flex', '2.5.39'), - ('Bison', '3.0.2'), -] - -moduleclass = 'devel' diff --git a/e/ea-utils/ea-utils-27a4809-foss-2016a.eb b/e/ea-utils/ea-utils-27a4809-foss-2016a.eb deleted file mode 100644 index 82abd6d8..00000000 --- a/e/ea-utils/ea-utils-27a4809-foss-2016a.eb +++ /dev/null @@ -1,51 +0,0 @@ -easyblock = 'MakeCp' - -name = 'ea-utils' -version = '27a4809' - -homepage = 'https://code.google.com/p/ea-utils/' -description = """Command-line tools for processing biological sequencing data. -Barcode demultiplexing, adapter trimming, etc. - -Primarily written to support an Illumina based pipeline - -but should work with any FASTQs.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'optarch': True, 'pic': True} - -source_urls = ['https://github.com/ExpressionAnalysis/%(name)s/tarball/master'] -sources = [SOURCE_TGZ] - -checksums = ['45eef4b040f83abe2c9f51d4a7d18271'] - -start_dir = 'clipper' - -prebuildopts = "sed -i 's/$(CFLAGS)/$(CFLAGS) $(LDFLAGS) -I./' Makefile && PREFIX=%(installdir)s " -buildopts = 'fastq-mcf fastq-multx fastq-join fastq-stats fastq-clipper sam-stats varcall' - -builddependencies = [ - ('Perl', '5.22.1'), -] - -dependencies = [ - ('GSL', '2.1'), -] - -files_to_copy = [([ - 'fastq-mcf', 'fastq-multx', 'fastq-join', 'fastq-stats', 'fastq-clipper', - 'sam-stats', 'varcall', 'randomFQ', 'alc', 'determine-phred'], 'bin' -)] - - -sanity_check_paths = { - 'files': [ - 'bin/fastq-mcf', - 'bin/fastq-multx', - 'bin/fastq-join', - 'bin/fastq-stats', - 'bin/fastq-clipper', - 'bin/sam-stats', - 'bin/varcall'], - 'dirs': []} - -moduleclass = 'bio' diff --git a/e/ea-utils/ea-utils-27a4809-foss-2016b.eb b/e/ea-utils/ea-utils-27a4809-foss-2016b.eb deleted file mode 100644 index 626db13b..00000000 --- a/e/ea-utils/ea-utils-27a4809-foss-2016b.eb +++ /dev/null @@ -1,51 +0,0 @@ -easyblock = 'MakeCp' - -name = 'ea-utils' -version = '27a4809' - -homepage = 'https://code.google.com/p/ea-utils/' -description = """Command-line tools for processing biological sequencing data. -Barcode demultiplexing, adapter trimming, etc. - -Primarily written to support an Illumina based pipeline - -but should work with any FASTQs.""" - -toolchain = {'name': 'foss', 'version': '2016b'} -toolchainopts = {'optarch': True, 'pic': True} - -source_urls = ['https://github.com/ExpressionAnalysis/%(name)s/tarball/master'] -sources = [SOURCE_TGZ] - -checksums = ['45eef4b040f83abe2c9f51d4a7d18271'] - -start_dir = 'clipper' - -prebuildopts = "sed -i 's/$(CFLAGS)/$(CFLAGS) $(LDFLAGS) -I./' Makefile && PREFIX=%(installdir)s " -buildopts = 'fastq-mcf fastq-multx fastq-join fastq-stats fastq-clipper sam-stats varcall' - -builddependencies = [ - ('Perl', '5.22.1'), -] - -dependencies = [ - ('GSL', '2.1'), -] - -files_to_copy = [([ - 'fastq-mcf', 'fastq-multx', 'fastq-join', 'fastq-stats', 'fastq-clipper', - 'sam-stats', 'varcall', 'randomFQ', 'alc', 'determine-phred'], 'bin' -)] - - -sanity_check_paths = { - 'files': [ - 'bin/fastq-mcf', - 'bin/fastq-multx', - 'bin/fastq-join', - 'bin/fastq-stats', - 'bin/fastq-clipper', - 'bin/sam-stats', - 'bin/varcall'], - 'dirs': []} - -moduleclass = 'bio' diff --git a/e/eudev/eudev-3.1.5-foss-2015g.eb b/e/eudev/eudev-3.1.5-foss-2015g.eb deleted file mode 100644 index 91f0b92a..00000000 --- a/e/eudev/eudev-3.1.5-foss-2015g.eb +++ /dev/null @@ -1,39 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'eudev' -version = '3.1.5' - -homepage = 'https://wiki.gentoo.org/wiki/Project:Eudev' -description = """eudev is a fork of systemd-udev with the goal of obtaining - better compatibility with existing software such as - OpenRC and Upstart, older kernels, various toolchains - and anything else required by users and various distributions.""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'cstd': 'c99'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://dev.gentoo.org/~blueness/%(name)s/'] -patches = ['%(name)s-3.1.2_pre-2.6.34_kernel.patch'] - -builddependencies = [ - ('gperf', '3.0.4'), -] - -osdependencies = [('kernel-headers', 'linux-libc-dev')] - -configopts = '--disable-blkid --disable-selinux --disable-manpages ' -runtest = 'check' - -sanity_check_paths = { - 'files': [ - 'bin/udevadm', - 'include/libudev.h', - 'include/udev.h', - 'lib/libudev.so.1'], - 'dirs': [], -} - -maxparallel = 1 - -moduleclass = 'system' diff --git a/f/FDS/FDS-6.3.0-intel-2015b.eb b/f/FDS/FDS-6.3.0-intel-2015b.eb deleted file mode 100644 index 7278d23d..00000000 --- a/f/FDS/FDS-6.3.0-intel-2015b.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'FDS' -version = '6.3.0' - -homepage = 'http://firemodels.github.io/fds-smv/' -description = """Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, - with an emphasis on smoke and heat transport from fires.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True, 'usempi': True} - -source_urls = ['https://github.com/firemodels/fds-smv/archive/'] -sources = ['e6ca47c.tar.gz'] - -patches = ['FDS-r18915_makefile.patch'] - -unpack_options = '--strip-components=1' - -start_dir = 'FDS_Compilation' - -# just run make in the install dir -skipsteps = ['configure', 'install'] -buildininstalldir = True - -prebuildopts = 'env FFLAGS="$FFLAGS -fpp"' - -modextrapaths = {'PATH': 'FDS_Compilation'} - -sanity_check_paths = { - 'files': ['FDS_Compilation/fds'], - 'dirs': [], -} -moduleclass = 'phys' diff --git a/f/FDS/FDS-r17534-intel-2015a.eb b/f/FDS/FDS-r17534-intel-2015a.eb deleted file mode 100644 index 2779e0dd..00000000 --- a/f/FDS/FDS-r17534-intel-2015a.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'FDS' -version = 'r17534' - -homepage = 'https://code.google.com/p/fds-smv/' -description = """Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, - with an emphasis on smoke and heat transport from fires.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'pic': True, 'usempi': True} - -sources = [SOURCE_TAR_GZ] -patches = ['FDS-%(version)s_makefile.patch'] - -unpack_options = '--strip-components=1' - -start_dir = 'FDS_Compilation' - -parallel = 1 - -# just run make in the install dir -skipsteps = ['configure', 'install'] -buildininstalldir = True - -modextrapaths = {'PATH': 'FDS_Compilation'} - -sanity_check_paths = { - 'files': ['FDS_Compilation/fds'], - 'dirs': [], -} - -moduleclass = 'phys' diff --git a/f/FDS/FDS-r18915-intel-2015a.eb b/f/FDS/FDS-r18915-intel-2015a.eb deleted file mode 100644 index e4ac832f..00000000 --- a/f/FDS/FDS-r18915-intel-2015a.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'FDS' -version = 'r18915' - -homepage = 'https://code.google.com/p/fds-smv/' -description = """Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, - with an emphasis on smoke and heat transport from fires.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'pic': True, 'usempi': True} - -sources = [SOURCE_TAR_GZ] -patches = ['FDS-%(version)s_makefile.patch'] - -# just run make in the install dir -skipsteps = ['configure', 'install'] -buildininstalldir = True - -modextrapaths = {'PATH': 'FDS_Source'} - -sanity_check_paths = { - 'files': ['FDS_Source/fds'], - 'dirs': [], -} - -moduleclass = 'phys' diff --git a/f/FDS/FDS-r22681-intel-2015a.eb b/f/FDS/FDS-r22681-intel-2015a.eb deleted file mode 100644 index 75d4dcf4..00000000 --- a/f/FDS/FDS-r22681-intel-2015a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'FDS' -version = 'r22681' - -homepage = 'https://code.google.com/p/fds-smv/' -description = """Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, - with an emphasis on smoke and heat transport from fires.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'pic': True, 'usempi': True} - -sources = [SOURCE_TAR_GZ] -patches = ['FDS-r18915_makefile.patch'] - -unpack_options = '--strip-components=1' - -start_dir = 'FDS_Compilation' - -# just run make in the install dir -skipsteps = ['configure', 'install'] -buildininstalldir = True - -modextrapaths = {'PATH': 'FDS_Compilation'} - -sanity_check_paths = { - 'files': ['FDS_Compilation/fds'], - 'dirs': [], -} - -moduleclass = 'phys' diff --git a/f/FFTW/FFTW-3.3.4-intel-2015b.eb b/f/FFTW/FFTW-3.3.4-intel-2015b.eb deleted file mode 100644 index 190d5fd0..00000000 --- a/f/FFTW/FFTW-3.3.4-intel-2015b.eb +++ /dev/null @@ -1,39 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-06-29_22-09-37 -easyblock = 'ConfigureMake' - -name = 'FFTW' -version = '3.3.4' - -homepage = 'http://www.fftw.org' -description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) - in one or more dimensions, of arbitrary input size, and of both real and complex data.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'optarch': True, 'pic': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [homepage] - -common_configopts = "--enable-threads --enable-openmp --with-pic" - -# no quad precision, requires GCC v4.6 or higher -configopts = [ - common_configopts + " --enable-single --enable-sse2 --enable-mpi", - common_configopts + " --enable-long-double --enable-mpi", - common_configopts + " --enable-sse2 --enable-mpi", # default as last -] - -sanity_check_paths = { - 'files': [ - 'bin/fftw%s' % - x for x in [ - '-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + [ - 'include/fftw3%s' % - x for x in [ - '-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + [ - 'lib/libfftw3%s%s.a' % - (x, y) for x in [ - '', 'f', 'l'] for y in [ - '', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } - -moduleclass = 'numlib' diff --git a/f/FFTW/FFTW-3.3.5-foss-2016a.eb b/f/FFTW/FFTW-3.3.5-foss-2016a.eb deleted file mode 100644 index 310e6834..00000000 --- a/f/FFTW/FFTW-3.3.5-foss-2016a.eb +++ /dev/null @@ -1,40 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'FFTW' -version = '3.3.5' - -homepage = 'http://www.fftw.org' -description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) - in one or more dimensions, of arbitrary input size, and of both real and complex data.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'pic': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [homepage] - -common_configopts = "--enable-threads --enable-openmp --with-pic" - -# no quad precision, requires GCC v4.6 or higher -# see also -# http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html -configopts = [ - common_configopts + " --enable-single --enable-sse2 --enable-mpi", - common_configopts + " --enable-long-double --enable-mpi", - common_configopts + " --enable-sse2 --enable-mpi", # default as last -] - -sanity_check_paths = { - 'files': [ - 'bin/fftw%s' % - x for x in [ - '-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + [ - 'include/fftw3%s' % - x for x in [ - '-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + [ - 'lib/libfftw3%s%s.a' % - (x, y) for x in [ - '', 'f', 'l'] for y in [ - '', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } - -moduleclass = 'numlib' diff --git a/f/FFTW/FFTW-3.3.5-intel-2016a.eb b/f/FFTW/FFTW-3.3.5-intel-2016a.eb deleted file mode 100644 index 1fe1e319..00000000 --- a/f/FFTW/FFTW-3.3.5-intel-2016a.eb +++ /dev/null @@ -1,40 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'FFTW' -version = '3.3.5' - -homepage = 'http://www.fftw.org' -description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) - in one or more dimensions, of arbitrary input size, and of both real and complex data.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'pic': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [homepage] - -common_configopts = "--enable-threads --enable-openmp --with-pic" - -# no quad precision, requires GCC v4.6 or higher -# see also -# http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html -configopts = [ - common_configopts + " --enable-single --enable-sse2 --enable-mpi", - common_configopts + " --enable-long-double --enable-mpi", - common_configopts + " --enable-sse2 --enable-mpi", # default as last -] - -sanity_check_paths = { - 'files': [ - 'bin/fftw%s' % - x for x in [ - '-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + [ - 'include/fftw3%s' % - x for x in [ - '-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + [ - 'lib/libfftw3%s%s.a' % - (x, y) for x in [ - '', 'f', 'l'] for y in [ - '', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } - -moduleclass = 'numlib' diff --git a/f/FFmpeg/FFmpeg-0.10.16-intel-2016a.eb b/f/FFmpeg/FFmpeg-0.10.16-intel-2016a.eb deleted file mode 100644 index 3badec48..00000000 --- a/f/FFmpeg/FFmpeg-0.10.16-intel-2016a.eb +++ /dev/null @@ -1,49 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'FFmpeg' -version = '0.10.16' - -homepage = 'https://www.ffmpeg.org/' -description = """A complete, cross-platform solution to record, convert and stream audio and video.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -# disable use of -xHOST, since it can trigger an internal compiler error -# in this case -toolchainopts = {'optarch': False} - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = ['http://ffmpeg.org/releases/'] - -dependencies = [ - ('NASM', '2.11.08'), - ('zlib', '1.2.8'), - ('x264', '20160114'), -] - -configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX" ' -configopts += '--enable-libx264' - -sanity_check_paths = { - 'files': [ - 'bin/ff%s' % - x for x in [ - 'mpeg', - 'probe', - 'server']] + - [ - 'lib/lib%s.%s' % - (x, - y) for x in [ - 'avdevice', - 'avfilter', - 'avformat', - 'avcodec', - 'postproc', - 'swresample', - 'swscale', - 'avutil'] for y in [ - 'so', - 'a']], - 'dirs': ['include']} - -moduleclass = 'vis' diff --git a/f/FFmpeg/FFmpeg-2.8.6-intel-2016a.eb b/f/FFmpeg/FFmpeg-2.8.6-intel-2016a.eb deleted file mode 100644 index 99241cbf..00000000 --- a/f/FFmpeg/FFmpeg-2.8.6-intel-2016a.eb +++ /dev/null @@ -1,46 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'FFmpeg' -version = '2.8.6' - -homepage = 'https://www.ffmpeg.org/' -description = """A complete, cross-platform solution to record, convert and stream audio and video.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = ['http://ffmpeg.org/releases/'] - -dependencies = [ - ('NASM', '2.11.08'), - ('zlib', '1.2.8'), - ('x264', '20160114'), -] - -configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX" ' -configopts += '--enable-libx264' - -sanity_check_paths = { - 'files': [ - 'bin/ff%s' % - x for x in [ - 'mpeg', - 'probe', - 'server']] + - [ - 'lib/lib%s.%s' % - (x, - y) for x in [ - 'avdevice', - 'avfilter', - 'avformat', - 'avcodec', - 'postproc', - 'swresample', - 'swscale', - 'avutil'] for y in [ - 'so', - 'a']], - 'dirs': ['include']} - -moduleclass = 'vis' diff --git a/f/FFmpeg/FFmpeg-2.8.7-foss-2016a.eb b/f/FFmpeg/FFmpeg-2.8.7-foss-2016a.eb deleted file mode 100644 index 8d51d65a..00000000 --- a/f/FFmpeg/FFmpeg-2.8.7-foss-2016a.eb +++ /dev/null @@ -1,46 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'FFmpeg' -version = '2.8.7' - -homepage = 'https://www.ffmpeg.org/' -description = """A complete, cross-platform solution to record, convert and stream audio and video.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = ['http://ffmpeg.org/releases/'] - -dependencies = [ - ('NASM', '2.12.01'), - ('zlib', '1.2.8'), - ('x264', '20160430'), -] - -configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX" ' -configopts += '--enable-libx264' - -sanity_check_paths = { - 'files': [ - 'bin/ff%s' % - x for x in [ - 'mpeg', - 'probe', - 'server']] + - [ - 'lib/lib%s.%s' % - (x, - y) for x in [ - 'avdevice', - 'avfilter', - 'avformat', - 'avcodec', - 'postproc', - 'swresample', - 'swscale', - 'avutil'] for y in [ - SHLIB_EXT, - 'a']], - 'dirs': ['include']} - -moduleclass = 'vis' diff --git a/f/FFmpeg/FFmpeg-2.8.7-intel-2016a.eb b/f/FFmpeg/FFmpeg-2.8.7-intel-2016a.eb deleted file mode 100644 index 04978dd9..00000000 --- a/f/FFmpeg/FFmpeg-2.8.7-intel-2016a.eb +++ /dev/null @@ -1,46 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'FFmpeg' -version = '2.8.7' - -homepage = 'https://www.ffmpeg.org/' -description = """A complete, cross-platform solution to record, convert and stream audio and video.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = ['http://ffmpeg.org/releases/'] - -dependencies = [ - ('NASM', '2.12.01'), - ('zlib', '1.2.8'), - ('x264', '20160430'), -] - -configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX" ' -configopts += '--enable-libx264' - -sanity_check_paths = { - 'files': [ - 'bin/ff%s' % - x for x in [ - 'mpeg', - 'probe', - 'server']] + - [ - 'lib/lib%s.%s' % - (x, - y) for x in [ - 'avdevice', - 'avfilter', - 'avformat', - 'avcodec', - 'postproc', - 'swresample', - 'swscale', - 'avutil'] for y in [ - 'so', - 'a']], - 'dirs': ['include']} - -moduleclass = 'vis' diff --git a/f/FIAT/FIAT-1.6.0-intel-2015b-Python-2.7.9.eb b/f/FIAT/FIAT-1.6.0-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index 1871acb0..00000000 --- a/f/FIAT/FIAT-1.6.0-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,36 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'FIAT' -version = '1.6.0' - -homepage = 'https://bitbucket.org/fenics-project/fiat' -description = """The FInite element Automatic Tabulator FIAT supports generation of arbitrary order -instances of the Lagrange elements on lines, triangles, and tetrahedra. It is also capable of generating -arbitrary order instances of Jacobi-type quadrature rules on the same element shapes.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['https://bitbucket.org/fenics-project/fiat/downloads'] -sources = [SOURCELOWER_TAR_GZ] - -python = "Python" -pythonversion = '2.7.9' -pythonshortversion = ".".join(pythonversion.split('.')[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - -dependencies = [ - (python, pythonversion), - ('ScientificPython', '2.9.4', versionsuffix), - ('sympy', '0.7.6', versionsuffix), -] - -options = {'modulename': name} - -sanity_check_paths = { - 'files': [''], - #'dirs': ['lib/python%s/site-packages/FIAT' % pythonshortversion], - 'dirs': [''], -} - -moduleclass = 'math' diff --git a/f/FIAT/FIAT-1.6.0-intel-2016.01-Python-2.7.9.eb b/f/FIAT/FIAT-1.6.0-intel-2016.01-Python-2.7.9.eb deleted file mode 100644 index eb33a733..00000000 --- a/f/FIAT/FIAT-1.6.0-intel-2016.01-Python-2.7.9.eb +++ /dev/null @@ -1,35 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'FIAT' -version = '1.6.0' - -homepage = 'https://bitbucket.org/fenics-project/fiat' -description = """The FInite element Automatic Tabulator FIAT supports generation of arbitrary order -instances of the Lagrange elements on lines, triangles, and tetrahedra. It is also capable of generating -arbitrary order instances of Jacobi-type quadrature rules on the same element shapes.""" - -toolchain = {'name': 'intel', 'version': '2016.01'} - -source_urls = ['https://bitbucket.org/fenics-project/fiat/downloads'] -sources = [SOURCELOWER_TAR_GZ] - -python = "Python" -pythonversion = '2.7.9' -pythonshortversion = ".".join(pythonversion.split('.')[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - -dependencies = [ - (python, pythonversion), - ('ScientificPython', '2.9.4', versionsuffix), - ('sympy', '0.7.6', versionsuffix), -] - -options = {'modulename': name} - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib'], -} - -moduleclass = 'math' diff --git a/f/FLEUR/FLEUR-0.26e-intel-2016a.eb b/f/FLEUR/FLEUR-0.26e-intel-2016a.eb deleted file mode 100644 index f2e25311..00000000 --- a/f/FLEUR/FLEUR-0.26e-intel-2016a.eb +++ /dev/null @@ -1,48 +0,0 @@ -easyblock = 'MakeCp' - -name = 'FLEUR' -version = '0.26e' - -homepage = 'http://www.flapw.de/' -description = """FLEUR is a feature-full, freely available FLAPW (full potential linearized augmented planewave) code, - based on density-functional theory.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'usempi': True, 'r8': True} - -# dowload requires registration, see -# http://www.flapw.de/pm/index.php?n=FLEUR.Downloads -sources = ['v%s.tgz' % version.split('.')[1]] - -builddependencies = [('imake', '1.0.7')] - -dependencies = [ - ('zlib', '1.2.8'), - ('Szip', '2.1'), - ('HDF5', '1.8.16'), - # ('Wannier90', '2.0.1'), # only needed if '#define wann' is added to Imakefile -] - -# define hardware platform to be 'parallel intel compiler, 64 bit, use -# scalapack') -prebuildopts = "sed -i 's/^#define jureca/#define linux_evp_64/g' Imakefile && " -# don't specialize for systems with structural symmetry -prebuildopts += "sed -i 's/^#define inversion//g' Imakefile && " -# no need to jump through hoops to make compilation work with older -# Fortran compilers -prebuildopts += "sed -i 's/^#define f_90//g' Imakefile && " - -prebuildopts += "imake && " -buildopts = 'FC="$FC" FFLAGS="$FFLAGS" HDFROOT=$EBROOTHDF5 fleur.x inpgen.x' - -# parallel build tends to fail -parallel = 1 - -files_to_copy = [(['fleur.x', 'inpgen.x'], 'bin')] - -sanity_check_paths = { - 'files': ['bin/fleur.x', 'bin/inpgen.x'], - 'dirs': [], -} - -moduleclass = 'chem' diff --git a/f/FLTK/FLTK-1.3.3-foss-2016a.eb b/f/FLTK/FLTK-1.3.3-foss-2016a.eb deleted file mode 100644 index a1517731..00000000 --- a/f/FLTK/FLTK-1.3.3-foss-2016a.eb +++ /dev/null @@ -1,44 +0,0 @@ -# -# author: Dina Mahmoud Ibrahim ( Cairo University ) -# -easyblock = 'ConfigureMake' - -name = 'FLTK' -version = '1.3.3' - -homepage = 'http://www.fltk.org' -description = """FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, - and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL - and its built-in GLUT emulation.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'optarch': True, 'pic': True} - -sources = ['%(namelower)s-%(version)s-source.tar.gz'] -source_urls = ['http://fltk.org/pub/%(namelower)s/%(version)s/'] - -configopts = '--enable-shared --enable-threads --enable-xft' - -dependencies = [ - ('libX11', '1.6.3'), - ('libXcursor', '1.1.14'), - ('libXinerama', '1.1.3'), - ('Mesa', '11.1.2'), - ('libGLU', '9.0.0'), - ('libpng', '1.6.21'), - ('libjpeg-turbo', '1.4.2'), - ('xprop', '1.2.2'), - ('libXft', '2.3.2'), -] - -sanity_check_paths = { - 'files': [ - 'bin/fltk-config', - 'bin/fluid', - 'lib/libfltk.a', - 'lib/libfltk.%s' % - SHLIB_EXT], - 'dirs': ['lib'], -} - -moduleclass = 'vis' diff --git a/f/FLTK/FLTK-1.3.3-intel-2016a.eb b/f/FLTK/FLTK-1.3.3-intel-2016a.eb deleted file mode 100644 index ecde4b41..00000000 --- a/f/FLTK/FLTK-1.3.3-intel-2016a.eb +++ /dev/null @@ -1,44 +0,0 @@ -# -# author: Dina Mahmoud Ibrahim ( Cairo University ) -# -easyblock = 'ConfigureMake' - -name = 'FLTK' -version = '1.3.3' - -homepage = 'http://www.fltk.org' -description = """FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, - and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL - and its built-in GLUT emulation.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'optarch': True, 'pic': True} - -sources = ['%(namelower)s-%(version)s-source.tar.gz'] -source_urls = ['http://fltk.org/pub/%(namelower)s/%(version)s/'] - -configopts = '--enable-shared --enable-threads --enable-xft' - -dependencies = [ - ('libX11', '1.6.3'), - ('libXcursor', '1.1.14'), - ('libXinerama', '1.1.3'), - ('Mesa', '11.1.2'), - ('libGLU', '9.0.0'), - ('libpng', '1.6.21'), - ('libjpeg-turbo', '1.4.2'), - ('xprop', '1.2.2'), - ('libXft', '2.3.2'), -] - -sanity_check_paths = { - 'files': [ - 'bin/fltk-config', - 'bin/fluid', - 'lib/libfltk.a', - 'lib/libfltk.%s' % - SHLIB_EXT], - 'dirs': ['lib'], -} - -moduleclass = 'vis' diff --git a/f/FOX/FOX-1.6.51-foss-2015g.eb b/f/FOX/FOX-1.6.51-foss-2015g.eb deleted file mode 100644 index 1dd5da03..00000000 --- a/f/FOX/FOX-1.6.51-foss-2015g.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'FOX' -version = '1.6.51' - -homepage = 'http://fox-toolkit.org' - -description = """FOX is a C++ based Toolkit for developing Graphical User Interfaces easily and effectively. -It offers a wide, and growing, collection of Controls, and provides state of the art facilities such as -drag and drop, selection, as well as OpenGL widgets for 3D graphical manipulation.""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = ['ftp://ftp.fox-toolkit.org/pub'] -sources = [SOURCELOWER_TAR_GZ] - -sanity_check_paths = { - 'files': ['bin/fox-config'], - 'dirs': ['bin', 'lib', 'include'], -} - -moduleclass = 'lib' diff --git a/f/FreeFem++/FreeFem++-3.45-intel-2015b.eb b/f/FreeFem++/FreeFem++-3.45-intel-2015b.eb deleted file mode 100644 index db68a02d..00000000 --- a/f/FreeFem++/FreeFem++-3.45-intel-2015b.eb +++ /dev/null @@ -1,42 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'FreeFem++' -version = '3.45' - -homepage = 'http://www.freefem.org' -description = """FreeFem++ is a partial differential equation solver. It has its own language. freefem scripts can solve multiphysics non linear systems in 2D and 3D. -Problems involving PDE (2d, 3d) from several branches of physics such as fluid-structure interactions require interpolations of data on several meshes and their manipulation within one program. FreeFem++ includes a fast 2^d-tree-based interpolation algorithm and a language for the manipulation of data on multiple meshes (as a follow up of bamg (now a part of FreeFem++ ). - -FreeFem++ is written in C++ and the FreeFem++ language is a C++ idiom. It runs on Macs, Windows, Unix machines. FreeFem++ replaces the older freefem and freefem+.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'opt': True, 'optarch': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://www.freefem.org/ff++/ftp/'] - -patches = ['FreeFem_metis.patch'] - -dependencies = [ - ('HDF5', '1.8.13'), - ('SuiteSparse', '4.4.6', '-ParMETIS-4.0.3'), - ('PETSc', '3.6.3', '-Python-2.7.11'), - ('GSL', '1.16'), - ('arpack-ng', '3.3.0'), - ('FFTW', '3.3.4') -] - -configopts = '--with-umfpack="-lumfpack -lcholmod -lcolamd -lamd -lsuitesparseconfig" ' + \ - '--with-amd="-lumfpack -lcholmod -lcolamd -lamd -lsuitesparseconfig" --with-arpack="-larpack" ' + \ - '--with-petsc=$EBROOTPETSC --enable-generic --with-parmetis-include=$EBROOTPARMETIS/include --with-parmetis-ldflags="-lparmetis" ' + \ - '--disable-hpddm' # unable to get this one to work - -# parallel builds tend to fail ? or not ? -parallel = 1 - -sanity_check_paths = { - 'files': [], - 'dirs': ['bin'] -} - -moduleclass = 'cae' diff --git a/f/FreeXL/FreeXL-1.0.1-intel-2015a.eb b/f/FreeXL/FreeXL-1.0.1-intel-2015a.eb deleted file mode 100644 index e2833c72..00000000 --- a/f/FreeXL/FreeXL-1.0.1-intel-2015a.eb +++ /dev/null @@ -1,22 +0,0 @@ -name = 'FreeXL' -version = '1.0.1' - -easyblock = 'ConfigureMake' - -homepage = "https://www.gaia-gis.it/fossil/freexl/index" -description = "FreeXL is an open source library to extract valid data from within an Excel (.xls) spreadsheet." - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'usempi': False, 'pic': True} - -source_urls = ['http://www.gaia-gis.it/gaia-sins/freexl-sources/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [('CMake', '3.2.2')] - -sanity_check_paths = { - 'files': ["lib/libfreexl.la"], - 'dirs': ["lib"] -} - -moduleclass = 'lib' diff --git a/f/FreeXL/FreeXL-1.0.2-foss-2015a.eb b/f/FreeXL/FreeXL-1.0.2-foss-2015a.eb deleted file mode 100644 index 40bff9f9..00000000 --- a/f/FreeXL/FreeXL-1.0.2-foss-2015a.eb +++ /dev/null @@ -1,22 +0,0 @@ -name = 'FreeXL' -version = '1.0.2' - -easyblock = 'ConfigureMake' - -homepage = "https://www.gaia-gis.it/fossil/freexl/index" -description = "FreeXL is an open source library to extract valid data from within an Excel (.xls) spreadsheet." - -toolchain = {'name': 'foss', 'version': '2015a'} -toolchainopts = {'usempi': False, 'pic': True} - -source_urls = ['http://www.gaia-gis.it/gaia-sins/freexl-sources/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [('CMake', '3.4.1')] - -sanity_check_paths = { - 'files': ["lib/libfreexl.la"], - 'dirs': ["lib"] -} - -moduleclass = 'lib' diff --git a/f/FreeXL/FreeXL-1.0.2-intel-2016b.eb b/f/FreeXL/FreeXL-1.0.2-intel-2016b.eb deleted file mode 100644 index 2e9b594a..00000000 --- a/f/FreeXL/FreeXL-1.0.2-intel-2016b.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'FreeXL' -version = '1.0.2' - -homepage = "https://www.gaia-gis.it/fossil/freexl/index" -description = "FreeXL is an open source library to extract valid data from within an Excel (.xls) spreadsheet." - -toolchain = {'name': 'intel', 'version': '2016b'} -toolchainopts = {'pic': True} - -source_urls = ['http://www.gaia-gis.it/gaia-sins/freexl-sources/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [('CMake', '3.7.1')] - -sanity_check_paths = { - 'files': ['lib/libfreexl.a'], - 'dirs': [] -} - -moduleclass = 'lib' diff --git a/f/ffmpeg/ffmpeg-2.4-intel-2015b.eb b/f/ffmpeg/ffmpeg-2.4-intel-2015b.eb deleted file mode 100644 index ff27e172..00000000 --- a/f/ffmpeg/ffmpeg-2.4-intel-2015b.eb +++ /dev/null @@ -1,45 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-10-02_23-11-11 -easyblock = 'ConfigureMake' - -name = 'ffmpeg' -version = '2.4' - -homepage = 'https://www.ffmpeg.org/' -description = """A complete, cross-platform solution to record, convert and stream audio and video.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = [SOURCE_TAR_BZ2] -source_urls = ['http://ffmpeg.org/releases/'] - -configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX"' - -dependencies = [ - ('NASM', '2.11.05'), - ('zlib', '1.2.8'), -] - -sanity_check_paths = { - 'files': [ - 'bin/ff%s' % - x for x in [ - 'mpeg', - 'probe', - 'server']] + - [ - 'lib/lib%s.%s' % - (x, - y) for x in [ - 'avdevice', - 'avfilter', - 'avformat', - 'avcodec', - 'postproc', - 'swresample', - 'swscale', - 'avutil'] for y in [ - 'so', - 'a']], - 'dirs': ['include']} - -moduleclass = 'vis' diff --git a/f/fixesproto/fixesproto-5.0-foss-2016a.eb b/f/fixesproto/fixesproto-5.0-foss-2016a.eb deleted file mode 100644 index 03621b65..00000000 --- a/f/fixesproto/fixesproto-5.0-foss-2016a.eb +++ /dev/null @@ -1,21 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'fixesproto' -version = '5.0' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X.org FixesProto protocol headers.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_PROTO_SOURCE] - -sanity_check_paths = { - 'files': [ - 'include/X11/extensions/xfixesproto.h', - 'include/X11/extensions/xfixeswire.h'], - 'dirs': ['lib/pkgconfig'], -} - -moduleclass = 'vis' diff --git a/f/fixesproto/fixesproto-5.0-intel-2016a.eb b/f/fixesproto/fixesproto-5.0-intel-2016a.eb deleted file mode 100644 index 941a3d53..00000000 --- a/f/fixesproto/fixesproto-5.0-intel-2016a.eb +++ /dev/null @@ -1,21 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'fixesproto' -version = '5.0' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X.org FixesProto protocol headers.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_PROTO_SOURCE] - -sanity_check_paths = { - 'files': [ - 'include/X11/extensions/xfixesproto.h', - 'include/X11/extensions/xfixeswire.h'], - 'dirs': ['lib/pkgconfig'], -} - -moduleclass = 'vis' diff --git a/f/foss/foss-2015b.eb b/f/foss/foss-2015b.eb deleted file mode 100644 index 6bbcdeb4..00000000 --- a/f/foss/foss-2015b.eb +++ /dev/null @@ -1,39 +0,0 @@ -easyblock = "Toolchain" - -name = 'foss' -version = '2015b' - -homepage = '(none)' -description = """GNU Compiler Collection (GCC) based compiler toolchain, including - OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" - -toolchain = {'name': 'system', 'version': ''} - -gccver = '5.1.0' -binutilsver = '2.25' -tcver = '%s-binutils-%s' % (gccver, binutilsver) - -blaslib = 'OpenBLAS' -blasver = '0.2.14' -blas = '%s-%s' % (blaslib, blasver) -blassuff = '-LAPACK-3.5.0' - -# toolchain used to build foss dependencies -comp_mpi_tc_name = 'gompi' -comp_mpi_tc_ver = "%s" % version -comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) - -# compiler toolchain depencies -# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain -# because of toolchain preperation functions -# For binutils, stick to http://wiki.osdev.org/Cross-Compiler_Successful_Builds -dependencies = [ - ('GCC', gccver, '-binutils-%s' % binutilsver), - ('binutils', binutilsver, '', ('GCC', tcver)), - ('OpenMPI', '1.8.8', '', ('GNU', '%s-%s' % (gccver, binutilsver))), - (blaslib, blasver, blassuff, ('GNU', '%s-%s' % (gccver, binutilsver))), - ('FFTW', '3.3.4', '', comp_mpi_tc), - ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), -] - -moduleclass = 'toolchain' diff --git a/f/foss/foss-2015e.eb b/f/foss/foss-2015e.eb deleted file mode 100644 index 4e51ff4a..00000000 --- a/f/foss/foss-2015e.eb +++ /dev/null @@ -1,37 +0,0 @@ -easyblock = "Toolchain" - -name = 'foss' -version = '2015e' - -homepage = '(none)' -description = """GNU Compiler Collection (GCC) based compiler toolchain, including - OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" - -toolchain = {'name': 'system', 'version': ''} - -comp_name = 'GCC' -comp_version = '4.4.7-system' -comp = (comp_name, comp_version) - -blaslib = 'OpenBLAS' -blasver = '0.2.14' -blas = '%s-%s' % (blaslib, blasver) -blas_suff = '-LAPACK-3.5.0' - -# toolchain used to build foss dependencies -comp_mpi_tc_name = 'gompi' -comp_mpi_tc_ver = "%s" % version -comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) - -# compiler toolchain dependencies -# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain -# because of toolchain preperation functions -dependencies = [ - comp, - ('OpenMPI', '1.8.6', '', comp), # part of gompi-2015e - (blaslib, blasver, blas_suff, comp_mpi_tc), - ('FFTW', '3.3.4', '', comp_mpi_tc), - ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blas_suff), comp_mpi_tc) -] - -moduleclass = 'toolchain' diff --git a/f/foss/foss-2015g.eb b/f/foss/foss-2015g.eb deleted file mode 100644 index f3988851..00000000 --- a/f/foss/foss-2015g.eb +++ /dev/null @@ -1,39 +0,0 @@ -easyblock = "Toolchain" - -name = 'foss' -version = '2015g' - -homepage = '(none)' -description = """GNU Compiler Collection (GCC) based compiler toolchain, including - OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" - -toolchain = {'name': 'system', 'version': ''} - -gccver = '4.9.3' -binutilsver = '2.25' -tcver = '%s-binutils-%s' % (gccver, binutilsver) - -blaslib = 'OpenBLAS' -blasver = '0.2.14' -blas = '%s-%s' % (blaslib, blasver) -blassuff = '-LAPACK-3.5.0' - -# toolchain used to build foss dependencies -comp_mpi_tc_name = 'gompi' -comp_mpi_tc_ver = "%s" % version -comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) - -# compiler toolchain depencies -# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain -# because of toolchain preperation functions -# For binutils, stick to http://wiki.osdev.org/Cross-Compiler_Successful_Builds -dependencies = [ - ('GCC', gccver, '-binutils-%s' % binutilsver), - ('binutils', binutilsver, '', ('GCC', tcver)), - ('OpenMPI', '1.8.8', '', ('GNU', '%s-%s' % (gccver, binutilsver))), - (blaslib, blasver, blassuff, ('GNU', '%s-%s' % (gccver, binutilsver))), - ('FFTW', '3.3.4', '', comp_mpi_tc), - ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), -] - -moduleclass = 'toolchain' diff --git a/f/foss/foss-2016a.eb b/f/foss/foss-2016a.eb deleted file mode 100644 index 3e6ef20f..00000000 --- a/f/foss/foss-2016a.eb +++ /dev/null @@ -1,37 +0,0 @@ -# IT4Innovations 2018 - -easyblock = 'Toolchain' - -name = 'foss' -version = '2016a' - -homepage = '(none)' -description = """GNU Compiler Collection (GCC) based compiler toolchain, including - OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" - -toolchain = {'name': 'system', 'version': ''} - -gccver = '4.9.3-2.25' - -blaslib = 'OpenBLAS' -blasver = '0.2.15' -blas = '%s-%s' % (blaslib, blasver) -blassuff = '-LAPACK-3.6.0' - -# toolchain used to build foss dependencies -comp_mpi_tc_name = 'gompi' -comp_mpi_tc = (comp_mpi_tc_name, version) - -# compiler toolchain depencies -# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain -# because of toolchain preperation functions -# For binutils, stick to http://wiki.osdev.org/Cross-Compiler_Successful_Builds -dependencies = [ - ('GCC', gccver), - ('OpenMPI', '1.10.7', '', ('GCC', gccver)), - (blaslib, blasver, blassuff, ('GCC', gccver)), - ('FFTW', '3.3.5', '', comp_mpi_tc), - ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), -] - -moduleclass = 'toolchain' diff --git a/f/freeglut/freeglut-3.0.0-foss-2016a-Mesa-11.2.1.eb b/f/freeglut/freeglut-3.0.0-foss-2016a-Mesa-11.2.1.eb deleted file mode 100644 index 7c266579..00000000 --- a/f/freeglut/freeglut-3.0.0-foss-2016a-Mesa-11.2.1.eb +++ /dev/null @@ -1,41 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'freeglut' -version = '3.0.0' - -homepage = 'http://freeglut.sourceforge.net/' -description = "freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library." - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://prdownloads.sourceforge.net/%(name)s'] - -mesa_ver = '11.2.1' -versionsuffix = '-Mesa-%s' % mesa_ver - -builddependencies = [('CMake', '3.4.3')] - -dependencies = [ - ('libX11', '1.6.3'), - ('libXext', '1.3.3'), - ('libXrandr', '1.5.0'), - ('libXi', '1.7.6'), - ('Mesa', mesa_ver), -] - -configopts = ' -DX11_X11_LIB="$EBROOTLIBX11/lib/libX11.so" ' -configopts += ' -DX11_X11_INCLUDE_PATH="$EBROOTLIBX11/include/X11" ' -configopts += ' -DX11_Xext_LIB="$EBROOTLIBXEXT/lib/libXext.so" ' -configopts += ' -DX11_Xrandr_LIB="$EBROOTLIBXRANDR/lib/libXrandr.so" ' -configopts += ' -DX11_Xrandr_INCLUDE_PATH="$EBROOTLIBXRANDR/include/X11/extensions/" ' -configopts += ' -DX11_Xi_LIB="$EBROOTLIBXIlib/libXrandr.so" ' -configopts += ' -DX11_Xi_INCLUDE_PATH="$EBROOTLIBXI/include/X11/extensions/" ' - -sanity_check_paths = { - 'files': [ - ('lib/libglut.a', 'lib64/libglut.a'), ('lib/libglut.%s' % - SHLIB_EXT, 'lib64/libglut.%s' % - SHLIB_EXT)], 'dirs': ['include/GL'], } - -moduleclass = 'lib' diff --git a/f/freeglut/freeglut-3.0.0-foss-2016a.eb b/f/freeglut/freeglut-3.0.0-foss-2016a.eb deleted file mode 100644 index b3808986..00000000 --- a/f/freeglut/freeglut-3.0.0-foss-2016a.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'freeglut' -version = '3.0.0' - -homepage = 'http://freeglut.sourceforge.net/' -description = "freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library." - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://prdownloads.sourceforge.net/%(name)s'] - -builddependencies = [('CMake', '3.4.3')] - -dependencies = [ - ('libX11', '1.6.3'), - ('libXext', '1.3.3'), - ('libXrandr', '1.5.0'), - ('libXi', '1.7.6'), - ('Mesa', '11.1.2'), -] - -configopts = ' -DX11_X11_LIB="$EBROOTLIBX11/lib/libX11.so" ' -configopts += ' -DX11_X11_INCLUDE_PATH="$EBROOTLIBX11/include/X11" ' -configopts += ' -DX11_Xext_LIB="$EBROOTLIBXEXT/lib/libXext.so" ' -configopts += ' -DX11_Xrandr_LIB="$EBROOTLIBXRANDR/lib/libXrandr.so" ' -configopts += ' -DX11_Xrandr_INCLUDE_PATH="$EBROOTLIBXRANDR/include/X11/extensions/" ' -configopts += ' -DX11_Xi_LIB="$EBROOTLIBXIlib/libXrandr.so" ' -configopts += ' -DX11_Xi_INCLUDE_PATH="$EBROOTLIBXI/include/X11/extensions/" ' - -sanity_check_paths = { - 'files': [ - ('lib/libglut.a', 'lib64/libglut.a'), ('lib/libglut.%s' % - SHLIB_EXT, 'lib64/libglut.%s' % - SHLIB_EXT)], 'dirs': ['include/GL'], } - -moduleclass = 'lib' diff --git a/f/freeglut/freeglut-3.0.0-intel-2016a-Mesa-11.2.1.eb b/f/freeglut/freeglut-3.0.0-intel-2016a-Mesa-11.2.1.eb deleted file mode 100644 index 49d8d568..00000000 --- a/f/freeglut/freeglut-3.0.0-intel-2016a-Mesa-11.2.1.eb +++ /dev/null @@ -1,41 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'freeglut' -version = '3.0.0' - -homepage = 'http://freeglut.sourceforge.net/' -description = "freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library." - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://prdownloads.sourceforge.net/%(name)s'] - -mesa_ver = '11.2.1' -versionsuffix = '-Mesa-%s' % mesa_ver - -builddependencies = [('CMake', '3.4.3')] - -dependencies = [ - ('libX11', '1.6.3'), - ('libXext', '1.3.3'), - ('libXrandr', '1.5.0'), - ('libXi', '1.7.6'), - ('Mesa', mesa_ver), -] - -configopts = ' -DX11_X11_LIB="$EBROOTLIBX11/lib/libX11.so" ' -configopts += ' -DX11_X11_INCLUDE_PATH="$EBROOTLIBX11/include/X11" ' -configopts += ' -DX11_Xext_LIB="$EBROOTLIBXEXT/lib/libXext.so" ' -configopts += ' -DX11_Xrandr_LIB="$EBROOTLIBXRANDR/lib/libXrandr.so" ' -configopts += ' -DX11_Xrandr_INCLUDE_PATH="$EBROOTLIBXRANDR/include/X11/extensions/" ' -configopts += ' -DX11_Xi_LIB="$EBROOTLIBXIlib/libXrandr.so" ' -configopts += ' -DX11_Xi_INCLUDE_PATH="$EBROOTLIBXI/include/X11/extensions/" ' - -sanity_check_paths = { - 'files': [ - ('lib/libglut.a', 'lib64/libglut.a'), ('lib/libglut.%s' % - SHLIB_EXT, 'lib64/libglut.%s' % - SHLIB_EXT)], 'dirs': ['include/GL'], } - -moduleclass = 'lib' diff --git a/f/freeglut/freeglut-3.0.0-intel-2016a.eb b/f/freeglut/freeglut-3.0.0-intel-2016a.eb deleted file mode 100644 index 33b92412..00000000 --- a/f/freeglut/freeglut-3.0.0-intel-2016a.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'freeglut' -version = '3.0.0' - -homepage = 'http://freeglut.sourceforge.net/' -description = "freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library." - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://prdownloads.sourceforge.net/%(name)s'] - -builddependencies = [('CMake', '3.4.3')] - -dependencies = [ - ('libX11', '1.6.3'), - ('libXext', '1.3.3'), - ('libXrandr', '1.5.0'), - ('libXi', '1.7.6'), - ('Mesa', '11.1.2'), -] - -configopts = ' -DX11_X11_LIB="$EBROOTLIBX11/lib/libX11.so" ' -configopts += ' -DX11_X11_INCLUDE_PATH="$EBROOTLIBX11/include/X11" ' -configopts += ' -DX11_Xext_LIB="$EBROOTLIBXEXT/lib/libXext.so" ' -configopts += ' -DX11_Xrandr_LIB="$EBROOTLIBXRANDR/lib/libXrandr.so" ' -configopts += ' -DX11_Xrandr_INCLUDE_PATH="$EBROOTLIBXRANDR/include/X11/extensions/" ' -configopts += ' -DX11_Xi_LIB="$EBROOTLIBXIlib/libXrandr.so" ' -configopts += ' -DX11_Xi_INCLUDE_PATH="$EBROOTLIBXI/include/X11/extensions/" ' - -sanity_check_paths = { - 'files': [ - ('lib/libglut.a', 'lib64/libglut.a'), ('lib/libglut.%s' % - SHLIB_EXT, 'lib64/libglut.%s' % - SHLIB_EXT)], 'dirs': ['include/GL'], } - -moduleclass = 'lib' diff --git a/g/GDAL/GDAL-1.11.4-intel-2015b--Python-3.4.3.eb b/g/GDAL/GDAL-1.11.4-intel-2015b--Python-3.4.3.eb deleted file mode 100644 index 58d06e89..00000000 --- a/g/GDAL/GDAL-1.11.4-intel-2015b--Python-3.4.3.eb +++ /dev/null @@ -1,28 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'GDAL' -version = "1.11.4" -versionsuffix = '-Python-3.4.3' - -homepage = 'http://www.gdal.org/' -description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style - Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model - to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for - data translation and processing.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['http://download.osgeo.org/gdal/%(version)s/'] -sources = [SOURCELOWER_TAR_XZ] - -dependencies = [ - ('zlib', '1.2.8'), - ('Python', '3.4.3') -] - -sanity_check_paths = { - 'files': ['lib/libgdal.%s' % SHLIB_EXT, 'lib/libgdal.a'], - 'dirs': ['bin', 'include'] -} - -moduleclass = 'data' diff --git a/g/GDAL/GDAL-1.9.2-foss-2015g.eb b/g/GDAL/GDAL-1.9.2-foss-2015g.eb deleted file mode 100644 index 2481f727..00000000 --- a/g/GDAL/GDAL-1.9.2-foss-2015g.eb +++ /dev/null @@ -1,24 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'GDAL' -version = '1.9.2' - -homepage = 'http://www.gdal.org/' -description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style - Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model - to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for - data translation and processing.""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = ['http://download.osgeo.org/gdal/'] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [('zlib', '1.2.8')] - -sanity_check_paths = { - 'files': ['lib/libgdal.so', 'lib/libgdal.a'], - 'dirs': ['bin', 'include'] -} - -moduleclass = 'data' diff --git a/g/GDAL/GDAL-2.1.0-foss-2015g.eb b/g/GDAL/GDAL-2.1.0-foss-2015g.eb deleted file mode 100644 index f6a2c6af..00000000 --- a/g/GDAL/GDAL-2.1.0-foss-2015g.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'GDAL' -version = "2.1.0" - -homepage = 'http://www.gdal.org/' -description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style - Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model - to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for - data translation and processing.""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = ['http://download.osgeo.org/gdal/'] -sources = [SOURCELOWER_TAR_GZ] - - -dependencies = [('zlib', '1.2.8'), ] - -configopts = '--with-python=/usr/bin/python ' - -# to avoid libtool error, http://www.michael-joost.de/gdal_install.html -preconfigopts = 'unset CC CPP CXX &&' -prebuildopts = 'unset CC CPP CXX &&' - -sanity_check_paths = { - 'files': ['lib/libgdal.so', 'lib/libgdal.a'], - 'dirs': ['bin', 'include'] -} - -moduleclass = 'data' diff --git a/g/GDAL/GDAL-2.1.0-intel-2015b.eb b/g/GDAL/GDAL-2.1.0-intel-2015b.eb deleted file mode 100644 index 0a547b32..00000000 --- a/g/GDAL/GDAL-2.1.0-intel-2015b.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'GDAL' -version = "2.1.0" - -homepage = 'http://www.gdal.org/' -description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style - Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model - to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for - data translation and processing.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['http://download.osgeo.org/gdal/'] -sources = [SOURCELOWER_TAR_GZ] - - -dependencies = [('zlib', '1.2.8'), ] - -sanity_check_paths = { - 'files': ['lib/libgdal.%s' % SHLIB_EXT, 'lib/libgdal.a'], - 'dirs': ['bin', 'include'] -} - -moduleclass = 'data' diff --git a/g/GEOS/GEOS-3.5.0-foss-2015a-Python-2.7.11.eb b/g/GEOS/GEOS-3.5.0-foss-2015a-Python-2.7.11.eb deleted file mode 100644 index 2fc04cf2..00000000 --- a/g/GEOS/GEOS-3.5.0-foss-2015a-Python-2.7.11.eb +++ /dev/null @@ -1,37 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'GEOS' -version = '3.5.0' - -homepage = 'http://trac.osgeo.org/geos' -description = """GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)""" - -toolchain = {'name': 'foss', 'version': '2015a'} - -source_urls = ['http://download.osgeo.org/geos/'] -sources = [SOURCELOWER_TAR_BZ2] - -pyver = '2.7.11' -pyshortver = '.'.join(pyver.split('.')[0:2]) -versionsuffix = '-Python-%s' % pyver - -dependencies = [('Python', pyver)] - -builddependencies = [('SWIG', '3.0.8', versionsuffix)] - -configopts = '--enable-python' - -modextrapaths = {'PYTHONPATH': 'lib/python%s/site-packages' % pyshortver} - -sanity_check_paths = { - 'files': [ - 'bin/geos-config', - 'lib/libgeos.%s' % - SHLIB_EXT, - 'lib/libgeos.a', - 'include/geos.h'], - 'dirs': [ - 'lib/python%s/site-packages/geos' % - pyshortver]} - -moduleclass = 'math' diff --git a/g/GEOS/GEOS-3.5.0-foss-2015g.eb b/g/GEOS/GEOS-3.5.0-foss-2015g.eb deleted file mode 100644 index 55d9f727..00000000 --- a/g/GEOS/GEOS-3.5.0-foss-2015g.eb +++ /dev/null @@ -1,14 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'GEOS' -version = '3.5.0' - -homepage = 'http://trac.osgeo.org/geos' -description = """GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)""" - -source_urls = ['http://download.osgeo.org/geos/'] -sources = [SOURCELOWER_TAR_BZ2] - -toolchain = {'name': 'foss', 'version': '2015g'} - -moduleclass = 'math' diff --git a/g/GLib/GLib-2.40.0-foss-2015b.eb b/g/GLib/GLib-2.40.0-foss-2015b.eb deleted file mode 100644 index ed7feb18..00000000 --- a/g/GLib/GLib-2.40.0-foss-2015b.eb +++ /dev/null @@ -1,23 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-07-07_13-08-51 -easyblock = 'ConfigureMake' - -name = 'GLib' -version = '2.40.0' - -homepage = 'http://www.gtk.org/' -description = """GLib is one of the base libraries of the GTK+ project""" - -toolchain = {'name': 'foss', 'version': '2015b'} -toolchainopts = {'optarch': True, 'pic': True} - -source_urls = [ - 'http://ftp.gnome.org/pub/gnome/sources/glib/%(version_major_minor)s/'] -sources = ['glib-%(version)s.tar.xz'] - -dependencies = [ - ('libffi', '3.0.13'), - ('gettext', '0.19.2'), -] -builddependencies = [('Python', '2.7.9')] - -moduleclass = 'vis' diff --git a/g/GLib/GLib-2.40.0-foss-2015g.eb b/g/GLib/GLib-2.40.0-foss-2015g.eb deleted file mode 100644 index fe0fc804..00000000 --- a/g/GLib/GLib-2.40.0-foss-2015g.eb +++ /dev/null @@ -1,23 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-07-07_13-08-51 -easyblock = 'ConfigureMake' - -name = 'GLib' -version = '2.40.0' - -homepage = 'http://www.gtk.org/' -description = """GLib is one of the base libraries of the GTK+ project""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'optarch': True, 'pic': True} - -source_urls = [ - 'http://ftp.gnome.org/pub/gnome/sources/glib/%(version_major_minor)s/'] -sources = ['glib-%(version)s.tar.xz'] - -dependencies = [ - ('libffi', '3.0.13'), - ('gettext', '0.19.2'), -] -builddependencies = [('Python', '2.7.9')] - -moduleclass = 'vis' diff --git a/g/GLib/GLib-2.40.0-intel-2015b.eb b/g/GLib/GLib-2.40.0-intel-2015b.eb deleted file mode 100644 index 68150fe2..00000000 --- a/g/GLib/GLib-2.40.0-intel-2015b.eb +++ /dev/null @@ -1,23 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-07-07_13-08-51 -easyblock = 'ConfigureMake' - -name = 'GLib' -version = '2.40.0' - -homepage = 'http://www.gtk.org/' -description = """GLib is one of the base libraries of the GTK+ project""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'optarch': True, 'pic': True} - -source_urls = [ - 'http://ftp.gnome.org/pub/gnome/sources/glib/%(version_major_minor)s/'] -sources = ['glib-%(version)s.tar.xz'] - -dependencies = [ - ('libffi', '3.1'), - ('gettext', '0.19.2'), -] -builddependencies = [('Python', '2.7.8')] - -moduleclass = 'vis' diff --git a/g/GLib/GLib-2.48.0-foss-2016a.eb b/g/GLib/GLib-2.48.0-foss-2016a.eb deleted file mode 100644 index d735ed04..00000000 --- a/g/GLib/GLib-2.48.0-foss-2016a.eb +++ /dev/null @@ -1,39 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'GLib' -version = '2.48.0' - -homepage = 'http://www.gtk.org/' -description = """GLib is one of the base libraries of the GTK+ project""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'optarch': True, 'pic': True} - -source_urls = [FTPGNOME_SOURCE] -sources = [SOURCELOWER_TAR_XZ] - -dependencies = [ - ('libffi', '3.2.1'), - ('gettext', '0.19.7'), - ('libxml2', '2.9.3'), - ('PCRE', '8.38'), -] - -builddependencies = [('Python', '2.7.11')] - -configopts = "--disable-maintainer-mode --disable-silent-rules --disable-libelf --enable-static --enable-shared --disable-systemtap" - -postinstallcmds = [ - "sed -i -e 's|#!.*python|#!/usr/bin/env python|' %(installdir)s/bin/*"] - -sanity_check_paths = { - 'files': [ - 'lib/libglib-%(version_major)s.0.a', - 'lib/libglib-%%(version_major)s.0.%s' % - SHLIB_EXT], - 'dirs': [ - 'bin', - 'include'], -} - -moduleclass = 'vis' diff --git a/g/GLib/GLib-2.48.0-intel-2016a.eb b/g/GLib/GLib-2.48.0-intel-2016a.eb deleted file mode 100644 index 2e82800d..00000000 --- a/g/GLib/GLib-2.48.0-intel-2016a.eb +++ /dev/null @@ -1,39 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'GLib' -version = '2.48.0' - -homepage = 'http://www.gtk.org/' -description = """GLib is one of the base libraries of the GTK+ project""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'optarch': True, 'pic': True} - -source_urls = [FTPGNOME_SOURCE] -sources = [SOURCELOWER_TAR_XZ] - -dependencies = [ - ('libffi', '3.2.1'), - ('gettext', '0.19.7'), - ('libxml2', '2.9.3'), - ('PCRE', '8.38'), -] - -builddependencies = [('Python', '2.7.11')] - -configopts = "--disable-maintainer-mode --disable-silent-rules --disable-libelf --enable-static --enable-shared --disable-systemtap" - -postinstallcmds = [ - "sed -i -e 's|#!.*python|#!/usr/bin/env python|' %(installdir)s/bin/*"] - -sanity_check_paths = { - 'files': [ - 'lib/libglib-%(version_major)s.0.a', - 'lib/libglib-%%(version_major)s.0.%s' % - SHLIB_EXT], - 'dirs': [ - 'bin', - 'include'], -} - -moduleclass = 'vis' diff --git a/g/GLib/GLib-2.49.5-foss-2016b.eb b/g/GLib/GLib-2.49.5-foss-2016b.eb deleted file mode 100644 index 4aa67678..00000000 --- a/g/GLib/GLib-2.49.5-foss-2016b.eb +++ /dev/null @@ -1,39 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'GLib' -version = '2.49.5' - -homepage = 'http://www.gtk.org/' -description = """GLib is one of the base libraries of the GTK+ project""" - -toolchain = {'name': 'foss', 'version': '2016b'} -toolchainopts = {'pic': True} - -source_urls = [FTPGNOME_SOURCE] -sources = [SOURCELOWER_TAR_XZ] - -dependencies = [ - ('libffi', '3.2.1'), - ('gettext', '0.19.8'), - ('libxml2', '2.9.4'), - ('PCRE', '8.39'), -] - -builddependencies = [('Python', '2.7.12')] - -configopts = "--disable-maintainer-mode --disable-silent-rules --disable-libelf --enable-static --enable-shared --disable-systemtap" - -postinstallcmds = [ - "sed -i -e 's|#!.*python|#!/usr/bin/env python|' %(installdir)s/bin/*"] - -sanity_check_paths = { - 'files': [ - 'lib/libglib-%(version_major)s.0.a', - 'lib/libglib-%%(version_major)s.0.%s' % - SHLIB_EXT], - 'dirs': [ - 'bin', - 'include'], -} - -moduleclass = 'vis' diff --git a/g/GLib/GLib-2.49.5-intel-2016b.eb b/g/GLib/GLib-2.49.5-intel-2016b.eb deleted file mode 100644 index ff700eb2..00000000 --- a/g/GLib/GLib-2.49.5-intel-2016b.eb +++ /dev/null @@ -1,39 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'GLib' -version = '2.49.5' - -homepage = 'http://www.gtk.org/' -description = """GLib is one of the base libraries of the GTK+ project""" - -toolchain = {'name': 'intel', 'version': '2016b'} -toolchainopts = {'pic': True} - -source_urls = [FTPGNOME_SOURCE] -sources = [SOURCELOWER_TAR_XZ] - -dependencies = [ - ('libffi', '3.2.1'), - ('gettext', '0.19.8'), - ('libxml2', '2.9.4'), - ('PCRE', '8.39'), -] - -builddependencies = [('Python', '2.7.12')] - -configopts = "--disable-maintainer-mode --disable-silent-rules --disable-libelf --enable-static --enable-shared --disable-systemtap" - -postinstallcmds = [ - "sed -i -e 's|#!.*python|#!/usr/bin/env python|' %(installdir)s/bin/*"] - -sanity_check_paths = { - 'files': [ - 'lib/libglib-%(version_major)s.0.a', - 'lib/libglib-%%(version_major)s.0.%s' % - SHLIB_EXT], - 'dirs': [ - 'bin', - 'include'], -} - -moduleclass = 'vis' diff --git a/g/GMAP-GSNAP/GMAP-GSNAP-2015-12-31.v2-foss-2015b.eb b/g/GMAP-GSNAP/GMAP-GSNAP-2015-12-31.v2-foss-2015b.eb deleted file mode 100644 index 5440f253..00000000 --- a/g/GMAP-GSNAP/GMAP-GSNAP-2015-12-31.v2-foss-2015b.eb +++ /dev/null @@ -1,37 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# Swiss Institute of Bioinformatics -# Biozentrum - University of Basel - -easyblock = 'ConfigureMake' - -name = 'GMAP-GSNAP' -version = "2015-12-31.v2" - -homepage = 'http://research-pub.gene.com/gmap/' -description = """GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences - GSNAP: Genomic Short-read Nucleotide Alignment Program""" - -toolchain = {'name': 'foss', 'version': '2015b'} - -source_urls = ['http://research-pub.gene.com/gmap/src/'] -sources = [SOURCELOWER_TAR_GZ] - -# with these deps you can use standard compressed files -# to support files in gobby format take a look at README for extra dependencies -# http://research-pub.gene.com/gmap/src/README -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), -] - -# you can change the MAX_READLENGTH for GSNAP with something like this. -# details in the README http://research-pub.gene.com/gmap/src/README -#configopts = 'MAX_READLENGTH=250' - -sanity_check_paths = { - 'files': ['bin/gmap', 'bin/gsnap'], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/g/GMAP-GSNAP/GMAP-GSNAP-2016-05-01-foss-2016a.eb b/g/GMAP-GSNAP/GMAP-GSNAP-2016-05-01-foss-2016a.eb deleted file mode 100644 index 5e9cfedc..00000000 --- a/g/GMAP-GSNAP/GMAP-GSNAP-2016-05-01-foss-2016a.eb +++ /dev/null @@ -1,37 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# Swiss Institute of Bioinformatics -# Biozentrum - University of Basel - -easyblock = 'ConfigureMake' - -name = 'GMAP-GSNAP' -version = '2016-05-01' - -homepage = 'http://research-pub.gene.com/gmap/' -description = """GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences - GSNAP: Genomic Short-read Nucleotide Alignment Program""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://research-pub.gene.com/gmap/src/'] -sources = [SOURCELOWER_TAR_GZ] - -# with these deps you can use standard compressed files -# to support files in gobby format take a look at README for extra dependencies -# http://research-pub.gene.com/gmap/src/README -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), -] - -# you can change the MAX_READLENGTH for GSNAP with something like this. -# details in the README http://research-pub.gene.com/gmap/src/README -#configopts = 'MAX_READLENGTH=250' - -sanity_check_paths = { - 'files': ['bin/gmap', 'bin/gsnap'], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/g/GMAP-GSNAP/GMAP-GSNAP-2016-11-07-foss-2016b.eb b/g/GMAP-GSNAP/GMAP-GSNAP-2016-11-07-foss-2016b.eb deleted file mode 100644 index 00035603..00000000 --- a/g/GMAP-GSNAP/GMAP-GSNAP-2016-11-07-foss-2016b.eb +++ /dev/null @@ -1,40 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# Swiss Institute of Bioinformatics -# Biozentrum - University of Basel -# 2016-11-07 modified by: -# Adam Huffman -# The Francis Crick Institute - -easyblock = 'ConfigureMake' - -name = 'GMAP-GSNAP' -version = '2016-11-07' - -homepage = 'http://research-pub.gene.com/gmap/' -description = """GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences - GSNAP: Genomic Short-read Nucleotide Alignment Program""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = ['http://research-pub.gene.com/gmap/src/'] -sources = [SOURCELOWER_TAR_GZ] - -# with these deps you can use standard compressed files -# to support files in gobby format take a look at README for extra dependencies -# http://research-pub.gene.com/gmap/src/README -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), -] - -# you can change the MAX_READLENGTH for GSNAP with something like this. -# details in the README http://research-pub.gene.com/gmap/src/README -#configopts = 'MAX_READLENGTH=250' - -sanity_check_paths = { - 'files': ['bin/gmap', 'bin/gsnap'], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/g/GMP/GMP-5.0.5-foss-2015g.eb b/g/GMP/GMP-5.0.5-foss-2015g.eb deleted file mode 100644 index 77a01d25..00000000 --- a/g/GMP/GMP-5.0.5-foss-2015g.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'GMP' -version = '5.0.5' - -homepage = 'http://gmplib.org/' -description = """GMP is a free library for arbitrary precision arithmetic, - operating on signed integers, rational numbers, and floating point numbers. """ - -toolchain = {'name': 'foss', 'version': '2015g'} - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = [GNU_SOURCE] - -runtest = 'check' - -sanity_check_paths = { - 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], - 'dirs': [], -} - -moduleclass = 'math' diff --git a/g/GMP/GMP-5.0.5-intel-2015b.eb b/g/GMP/GMP-5.0.5-intel-2015b.eb deleted file mode 100644 index de76fa09..00000000 --- a/g/GMP/GMP-5.0.5-intel-2015b.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'GMP' -version = '5.0.5' - -homepage = 'http://gmplib.org/' -description = """GMP is a free library for arbitrary precision arithmetic, - operating on signed integers, rational numbers, and floating point numbers. """ - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = [GNU_SOURCE] - -runtest = 'check' - -sanity_check_paths = { - 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], - 'dirs': [], -} - -moduleclass = 'math' diff --git a/g/GMP/GMP-6.0.0a-foss-2015b.eb b/g/GMP/GMP-6.0.0a-foss-2015b.eb deleted file mode 100644 index f8095b4d..00000000 --- a/g/GMP/GMP-6.0.0a-foss-2015b.eb +++ /dev/null @@ -1,26 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'GMP' -version = '6.0.0a' - -homepage = 'http://gmplib.org/' -description = """GMP is a free library for arbitrary precision arithmetic, -operating on signed integers, rational numbers, and floating point numbers. """ - -toolchain = {'name': 'foss', 'version': '2015b'} -toolchainopts = {'pic': True, 'precise': True} - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = [GNU_SOURCE] - -# enable C++ interface -configopts = '--enable-cxx' - -runtest = 'check' - -sanity_check_paths = { - 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], - 'dirs': [], -} - -moduleclass = 'math' diff --git a/g/GMT/GMT-5.2.1-foss-2015g.eb b/g/GMT/GMT-5.2.1-foss-2015g.eb deleted file mode 100644 index d901988d..00000000 --- a/g/GMT/GMT-5.2.1-foss-2015g.eb +++ /dev/null @@ -1,62 +0,0 @@ -easyblock = "CMakeMake" - -name = "GMT" -version = "5.2.1" - -homepage = 'http://gmt.soest.hawaii.edu/' -description = """GMT is an open source collection of about 80 command-line tools for manipulating - geographic and Cartesian data sets (including filtering, trend fitting, gridding, projecting, - etc.) and producing PostScript illustrations ranging from simple x-y plots via contour maps - to artificially illuminated surfaces and 3D perspective views; the GMT supplements add another - 40 more specialized and discipline-specific tools. """ - -toolchain = {'name': 'foss', 'version': '2015g'} - -gshhg_ver = '2.3.4' -dcw_ver = '1.1.2' -sources = [ - 'gmt-%(version)s-src.tar.gz', - # coastlines, rivers, and political boundaries - 'gshhg-gmt-%s.tar.gz' % gshhg_ver, - # country polygons - 'dcw-gmt-%s.tar.gz' % dcw_ver, -] - -# 'http://gmt.soest.hawaii.edu/files/download?name=' needs flash enabled browser -source_urls = [ - 'http://ftp.soest.hawaii.edu/gmt', - # 'ftp://ftp.soest.hawaii.edu/gmt/legacy', - # 'ftp://ftp.soest.hawaii.edu/gshhg', - # 'ftp://ftp.soest.hawaii.edu/gshhg/legacy', - # 'ftp://ftp.soest.hawaii.edu/dcw', - # 'ftp://ftp.soest.hawaii.edu/dcw/legacy', -] - -#patches = ['GMT-%(version)s_netCDF.patch'] - -builddependencies = [('CMake', '3.3.1')] - -dependencies = [ - ('PCRE', '8.36'), - ('GDAL', '1.9.2'), - ('FFTW', '3.3.4', '', ('gompi', '2015g')), - ('netCDF', '4.3.2'), - # ('Ghostscript', '9.14'), -] - -preconfigopts = "export CMAKE_LIBRARY_PATH=$LD_LIBRARY_PATH && " - -configopts = '-DCOPY_GSHHG=TRUE -DGSHHG_ROOT=%%(builddir)s/gshhg-gmt-%s ' % gshhg_ver -configopts += '-DCOPY_DCW=TRUE -DDCW_ROOT=%%(builddir)s/dcw-gmt-%s ' % dcw_ver -configopts += '-DHAVE_NETCDF4=1 ' - -separate_build_dir = True - -sanity_check_paths = { - 'files': ['bin/gmt', 'bin/isogmt'], - 'dirs': [] -} - -modextrapaths = {'GMTHOME': ''} - -moduleclass = 'geo' diff --git a/g/GP2C/GP2C-0.0.9pl5-foss-2016a.eb b/g/GP2C/GP2C-0.0.9pl5-foss-2016a.eb deleted file mode 100644 index d72bb75e..00000000 --- a/g/GP2C/GP2C-0.0.9pl5-foss-2016a.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'GP2C' -version = '0.0.9pl5' - -homepage = 'http://pari.math.u-bordeaux.fr/pub/pari/manuals/gp2c/gp2c.html' -description = """The gp2c compiler is a package for translating GP routines into the C programming language, so that - they can be compiled and used with the PARI system or the GP calculator. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://pari.math.u-bordeaux.fr/pub/pari/GP2C/'] - -dependencies = [ - ('PARI-GP', '2.7.6'), -] - -configopts = '--with-paricfg=$EBROOTPARIMINGP/lib/pari/pari.cfg' - -runtest = 'check' - -sanity_check_paths = { - 'files': ['bin/%s' % binfile for binfile in ['gp2c', 'gp2c-run', ]], - 'dirs': ['bin'] -} - -moduleclass = 'math' diff --git a/g/GROMACS/GROMACS-4.6.7-foss-2015g-hybrid-single-PLUMED.eb b/g/GROMACS/GROMACS-4.6.7-foss-2015g-hybrid-single-PLUMED.eb deleted file mode 100644 index 193de255..00000000 --- a/g/GROMACS/GROMACS-4.6.7-foss-2015g-hybrid-single-PLUMED.eb +++ /dev/null @@ -1,37 +0,0 @@ -name = 'GROMACS' -version = '4.6.7' -versionsuffix = '-hybrid-single-PLUMED' - -homepage = 'http://www.gromacs.org' -description = """GROMACS is a versatile package to perform molecular dynamics, - i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'openmp': True, 'usempi': True} - -patches = ['gromacs-%s-plumed-2.1.3-mpi.patch' % version] - -source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [ - ('CMake', '3.3.1'), # We are using system CMake - ('libxml2', '2.9.2'), - ('almost', '2.1.0'), - ('libmatheval', '1.1.8') -] - -configopts = ' -DGMX_GPU=OFF -DGMX_DOUBLE=OFF -DGMX_SIMD=AVX2_256 ' - -dependencies = [ - ('Boost', '1.58.0', '-Python-2.7.9'), - ('almost', '2.1.0'), - ('libmatheval', '1.1.8'), -] - -sanity_check_paths = { - 'files': [''], - 'dirs': ['bin', 'include'], -} - -moduleclass = 'bio' diff --git a/g/GROMACS/GROMACS-5.0.4-foss-2015e-hybrid-single-PLUMED.eb b/g/GROMACS/GROMACS-5.0.4-foss-2015e-hybrid-single-PLUMED.eb deleted file mode 100644 index 5c411f44..00000000 --- a/g/GROMACS/GROMACS-5.0.4-foss-2015e-hybrid-single-PLUMED.eb +++ /dev/null @@ -1,26 +0,0 @@ -name = 'GROMACS' -version = '5.0.4' -versionsuffix = '-hybrid-single-PLUMED' - -homepage = 'http://www.gromacs.org' -description = """GROMACS is a versatile package to perform molecular dynamics, - i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" - -toolchain = {'name': 'foss', 'version': '2015e'} -toolchainopts = {'openmp': True, 'usempi': True} - -patches = ['gromacs-5.0.4-plumed-2.1.3.patch'] - -source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [ - # ('CMake', '3.0.0'), # We are using system CMake - ('libxml2', '2.9.2', '', ('gompi', '2015e')) -] - -configopts = ' -DGMX_GPU=OFF -DGMX_DOUBLE=OFF -DGMX_SIMD=AVX_256' - -dependencies = [('Boost', '1.58.0', '-Python-2.7.9', ('gompi', '2015e'))] - -moduleclass = 'bio' diff --git a/g/GROMACS/GROMACS-5.0.4-foss-2015g-hybrid-single-PLUMED.eb b/g/GROMACS/GROMACS-5.0.4-foss-2015g-hybrid-single-PLUMED.eb deleted file mode 100644 index 45e2c6bc..00000000 --- a/g/GROMACS/GROMACS-5.0.4-foss-2015g-hybrid-single-PLUMED.eb +++ /dev/null @@ -1,37 +0,0 @@ -name = 'GROMACS' -version = '5.0.4' -versionsuffix = '-hybrid-single-PLUMED' - -homepage = 'http://www.gromacs.org' -description = """GROMACS is a versatile package to perform molecular dynamics, - i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'openmp': True, 'usempi': True} - -patches = ['gromacs-%s-plumed-2.1.3-mpi.patch' % version] - -source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [ - ('CMake', '3.3.1'), # We are using system CMake - ('libxml2', '2.9.2'), - ('almost', '2.1.0'), - ('libmatheval', '1.1.8') -] - -configopts = ' -DGMX_GPU=OFF -DGMX_DOUBLE=OFF -DGMX_SIMD=AVX2_256 ' - -dependencies = [ - ('Boost', '1.58.0', '-Python-2.7.9'), - ('almost', '2.1.0'), - ('libmatheval', '1.1.8'), -] - -sanity_check_paths = { - 'files': ['bin/gmx_mpi'], - 'dirs': [''], -} - -moduleclass = 'bio' diff --git a/g/GROMACS/GROMACS-5.0.4-foss-2015g-hybrid-single.eb b/g/GROMACS/GROMACS-5.0.4-foss-2015g-hybrid-single.eb deleted file mode 100644 index 617706dc..00000000 --- a/g/GROMACS/GROMACS-5.0.4-foss-2015g-hybrid-single.eb +++ /dev/null @@ -1,36 +0,0 @@ -name = 'GROMACS' -version = '5.0.4' -versionsuffix = '-hybrid-single' - -homepage = 'http://www.gromacs.org' -description = """GROMACS is a versatile package to perform molecular dynamics, - i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'openmp': True, 'usempi': True} - -source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [ - ('almost', '2.1.0'), - ('libmatheval', '1.1.8') -] - -builddependencies = [ - ('CMake', '3.3.1'), # We are using system CMake - ('libxml2', '2.9.2'), - ('almost', '2.1.0'), - ('libmatheval', '1.1.8') -] - -configopts = ' -DGMX_GPU=OFF -DGMX_DOUBLE=OFF -DGMX_SIMD=AVX2_256 ' - -dependencies = [('Boost', '1.58.0', '-Python-2.7.9')] - -sanity_check_paths = { - 'files': ['bin/gmx_mpi'], - 'dirs': [''], -} - -moduleclass = 'bio' diff --git a/g/GROMACS/GROMACS-5.0.4-intel-2015b-hybrid-single.eb b/g/GROMACS/GROMACS-5.0.4-intel-2015b-hybrid-single.eb deleted file mode 100644 index 072f8a7e..00000000 --- a/g/GROMACS/GROMACS-5.0.4-intel-2015b-hybrid-single.eb +++ /dev/null @@ -1,24 +0,0 @@ -name = 'GROMACS' -version = '5.0.4' -versionsuffix = '-hybrid-single' - -homepage = 'http://www.gromacs.org' -description = """GROMACS is a versatile package to perform molecular dynamics, - i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'openmp': True, 'usempi': True} - -source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [ - ('CMake', '3.0.0'), - ('libxml2', '2.9.2') -] - -configopts = ' -DGMX_GPU=OFF -DGMX_DOUBLE=OFF' - -dependencies = [('Boost', '1.58.0', '-Python-2.7.9')] - -moduleclass = 'bio' diff --git a/g/GROMACS/GROMACS-5.1.2-foss-2015g-hybrid-single-CUDA-7.5-PLUMED.eb b/g/GROMACS/GROMACS-5.1.2-foss-2015g-hybrid-single-CUDA-7.5-PLUMED.eb deleted file mode 100644 index 8e188e53..00000000 --- a/g/GROMACS/GROMACS-5.1.2-foss-2015g-hybrid-single-CUDA-7.5-PLUMED.eb +++ /dev/null @@ -1,39 +0,0 @@ -name = 'GROMACS' -version = '5.1.2' -versionsuffix = '-hybrid-single-CUDA-7.5-PLUMED' - -homepage = 'http://www.gromacs.org' -description = """GROMACS is a versatile package to perform molecular dynamics, - i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'openmp': True, 'usempi': True} - -source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [ - ('CMake', '3.3.1'), # We are using system CMake - ('libxml2', '2.9.2'), - ('almost', '2.1.0'), - ('libmatheval', '1.1.8') -] - -preconfigopts = 'plumed patch -p -e gromacs-5.1.0 --shared &&' - -configopts = ' -DGMX_GPU=ON -DGMX_DOUBLE=OFF -DGMX_SIMD=AVX_256' - -dependencies = [ - ('Boost', '1.58.0', '-Python-2.7.9'), - ('almost', '2.1.0'), - ('libmatheval', '1.1.8'), - ('PLUMED', '2.3b'), - ('CUDA', '7.5.18', '', ('dummy', '')), -] - -sanity_check_paths = { - 'files': ['bin/gmx_mpi'], - 'dirs': [''], -} - -moduleclass = 'bio' diff --git a/g/GROMACS/GROMACS-5.1.2-foss-2015g-hybrid-single-PLUMED.eb b/g/GROMACS/GROMACS-5.1.2-foss-2015g-hybrid-single-PLUMED.eb deleted file mode 100644 index 40bd865a..00000000 --- a/g/GROMACS/GROMACS-5.1.2-foss-2015g-hybrid-single-PLUMED.eb +++ /dev/null @@ -1,38 +0,0 @@ -name = 'GROMACS' -version = '5.1.2' -versionsuffix = '-hybrid-single-PLUMED' - -homepage = 'http://www.gromacs.org' -description = """GROMACS is a versatile package to perform molecular dynamics, - i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'openmp': True, 'usempi': True} - -source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [ - ('CMake', '3.3.1'), # We are using system CMake - ('libxml2', '2.9.2'), - ('almost', '2.1.0'), - ('libmatheval', '1.1.8') -] - -preconfigopts = 'plumed patch -p -e gromacs-5.1.0 --shared &&' - -configopts = ' -DGMX_GPU=OFF -DGMX_DOUBLE=OFF -DGMX_SIMD=AVX2_256' - -dependencies = [ - ('Boost', '1.58.0', '-Python-2.7.9'), - ('almost', '2.1.0'), - ('libmatheval', '1.1.8'), - ('PLUMED', '2.3b') -] - -sanity_check_paths = { - 'files': ['bin/gmx_mpi'], - 'dirs': [''], -} - -moduleclass = 'bio' diff --git a/g/GROMACS/GROMACS-5.1.2-foss-2016a-hybrid-single-CUDA-7.5-PLUMED-2.3b.eb b/g/GROMACS/GROMACS-5.1.2-foss-2016a-hybrid-single-CUDA-7.5-PLUMED-2.3b.eb deleted file mode 100644 index 8a6daa4a..00000000 --- a/g/GROMACS/GROMACS-5.1.2-foss-2016a-hybrid-single-CUDA-7.5-PLUMED-2.3b.eb +++ /dev/null @@ -1,47 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ -# George Tsouloupas , Kenneth Hoste -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html -# -# Version 5.1.2 -# Author: Adam Huffman -# The Francis Crick Institute -## - -name = 'GROMACS' -version = '5.1.2' -versionsuffix = '-hybrid-single-CUDA-7.5-PLUMED-2.3b' - -homepage = 'http://www.gromacs.org' -description = """GROMACS is a versatile package to perform molecular dynamics, - i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'openmp': True, 'usempi': True} - -source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [ - ('CMake', '3.4.1'), - ('libxml2', '2.9.3') -] - -dependencies = [ - ('Boost', '1.61.0', '-serial'), - ('CUDA', '7.5.18', '', ('dummy', '')), - ('PLUMED', '2.3b') -] - -configopts = ' -DGMX_GPU=ON -DGMX_DOUBLE=OFF' - -preconfigopts = 'plumed patch -p -e gromacs-5.1.0 --shared &&' - -moduleclass = 'bio' diff --git a/g/GROMACS/GROMACS-5.1.2-foss-2016a-hybrid-single-PLUMED.eb b/g/GROMACS/GROMACS-5.1.2-foss-2016a-hybrid-single-PLUMED.eb deleted file mode 100644 index f38ef26a..00000000 --- a/g/GROMACS/GROMACS-5.1.2-foss-2016a-hybrid-single-PLUMED.eb +++ /dev/null @@ -1,38 +0,0 @@ -name = 'GROMACS' -version = '5.1.4' -versionsuffix = '-hybrid-single-PLUMED' - -homepage = 'http://www.gromacs.org' -description = """GROMACS is a versatile package to perform molecular dynamics, - i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'openmp': True, 'usempi': True} - -source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [ - ('CMake', '3.3.1'), # We are using system CMake - ('libxml2', '2.9.3'), - ('almost', '2.1.0'), - ('libmatheval', '1.1.8') -] - -preconfigopts = 'plumed patch -p -e gromacs-5.1.0 --shared &&' - -configopts = ' -DGMX_GPU=ON -DGMX_DOUBLE=OFF -DGMX_SIMD=AVX_128_FMA' - -dependencies = [ - ('Boost', '1.61.0', '-serial'), - ('almost', '2.1.0'), - ('libmatheval', '1.1.8'), - ('PLUMED', '2.3.0') -] - -sanity_check_paths = { - 'files': ['bin/gmx_mpi'], - 'dirs': [''], -} - -moduleclass = 'bio' diff --git a/g/GROMACS/GROMACS-5.1.2-intel-2015b-hybrid-single-CUDA-7.5-PLUMED-2.2.1.eb b/g/GROMACS/GROMACS-5.1.2-intel-2015b-hybrid-single-CUDA-7.5-PLUMED-2.2.1.eb deleted file mode 100644 index a5c89ba2..00000000 --- a/g/GROMACS/GROMACS-5.1.2-intel-2015b-hybrid-single-CUDA-7.5-PLUMED-2.2.1.eb +++ /dev/null @@ -1,47 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ -# George Tsouloupas , Kenneth Hoste -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html -# -# Version 5.1.2 -# Author: Adam Huffman -# The Francis Crick Institute -## - -name = 'GROMACS' -version = '5.1.2' -versionsuffix = '-hybrid-single-CUDA-7.5-PLUMED-2.2.1' - -homepage = 'http://www.gromacs.org' -description = """GROMACS is a versatile package to perform molecular dynamics, - i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'openmp': True, 'usempi': True} - -source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [ - ('CMake', '3.4.1'), - ('libxml2', '2.9.2') -] - -dependencies = [ - ('Boost', '1.59.0'), - ('CUDA', '7.5.18', '', ('dummy', '')), - ('PLUMED', '2.2.1') -] - -configopts = ' -DGMX_GPU=ON -DGMX_DOUBLE=OFF' - -preconfigopts = 'plumed patch -p -e gromacs-5.1.0 --shared &&' - -moduleclass = 'bio' diff --git a/g/GROMACS/GROMACS-5.1.2-intel-2015b-hybrid-single-cuda.eb b/g/GROMACS/GROMACS-5.1.2-intel-2015b-hybrid-single-cuda.eb deleted file mode 100644 index 81a59815..00000000 --- a/g/GROMACS/GROMACS-5.1.2-intel-2015b-hybrid-single-cuda.eb +++ /dev/null @@ -1,44 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ -# George Tsouloupas , Kenneth Hoste -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html -# -# Version 5.1.2 -# Author: Adam Huffman -# The Francis Crick Institute -## - -name = 'GROMACS' -version = '5.1.2' -versionsuffix = '-hybrid-single-cuda' - -homepage = 'http://www.gromacs.org' -description = """GROMACS is a versatile package to perform molecular dynamics, - i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'openmp': True, 'usempi': True} - -source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [ - ('CMake', '3.4.1'), - ('libxml2', '2.9.2') -] - -dependencies = [ - ('Boost', '1.59.0'), - ('CUDA', '7.5.18', '', ('dummy', '')) -] - -configopts = ' -DGMX_GPU=ON -DGMX_DOUBLE=OFF' - -moduleclass = 'bio' diff --git a/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid-single-cuda.eb b/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid-single-cuda.eb deleted file mode 100644 index 8e68d7f9..00000000 --- a/g/GROMACS/GROMACS-5.1.2-intel-2016a-hybrid-single-cuda.eb +++ /dev/null @@ -1,44 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ -# George Tsouloupas , Kenneth Hoste -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html -# -# Version 5.1.2 -# Author: Adam Huffman -# The Francis Crick Institute -## - -name = 'GROMACS' -version = '5.1.2' -versionsuffix = '-hybrid-single-cuda' - -homepage = 'http://www.gromacs.org' -description = """GROMACS is a versatile package to perform molecular dynamics, - i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'openmp': True, 'usempi': True} - -source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [ - ('CMake', '3.5.2'), - ('libxml2', '2.9.3') -] - -dependencies = [ - ('Boost', '1.60.0'), - ('CUDA', '7.5.18', '', ('dummy', '')) -] - -configopts = ' -DGMX_GPU=ON -DGMX_DOUBLE=OFF' - -moduleclass = 'bio' diff --git a/g/GROMACS/GROMACS-5.1.4-foss-2015g-hybrid-single-PLUMED.eb b/g/GROMACS/GROMACS-5.1.4-foss-2015g-hybrid-single-PLUMED.eb deleted file mode 100644 index 45e2c6bc..00000000 --- a/g/GROMACS/GROMACS-5.1.4-foss-2015g-hybrid-single-PLUMED.eb +++ /dev/null @@ -1,37 +0,0 @@ -name = 'GROMACS' -version = '5.0.4' -versionsuffix = '-hybrid-single-PLUMED' - -homepage = 'http://www.gromacs.org' -description = """GROMACS is a versatile package to perform molecular dynamics, - i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'openmp': True, 'usempi': True} - -patches = ['gromacs-%s-plumed-2.1.3-mpi.patch' % version] - -source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [ - ('CMake', '3.3.1'), # We are using system CMake - ('libxml2', '2.9.2'), - ('almost', '2.1.0'), - ('libmatheval', '1.1.8') -] - -configopts = ' -DGMX_GPU=OFF -DGMX_DOUBLE=OFF -DGMX_SIMD=AVX2_256 ' - -dependencies = [ - ('Boost', '1.58.0', '-Python-2.7.9'), - ('almost', '2.1.0'), - ('libmatheval', '1.1.8'), -] - -sanity_check_paths = { - 'files': ['bin/gmx_mpi'], - 'dirs': [''], -} - -moduleclass = 'bio' diff --git a/g/GROMACS/GROMACS-5.1.4-foss-2016a-hybrid-single-PLUMED-v2.eb b/g/GROMACS/GROMACS-5.1.4-foss-2016a-hybrid-single-PLUMED-v2.eb deleted file mode 100644 index 3ec78aff..00000000 --- a/g/GROMACS/GROMACS-5.1.4-foss-2016a-hybrid-single-PLUMED-v2.eb +++ /dev/null @@ -1,33 +0,0 @@ -name = 'GROMACS' -version = '5.1.4' -versionsuffix = '-hybrid-single-PLUMED-v2' - -homepage = 'http://www.gromacs.org' -description = """GROMACS is a versatile package to perform molecular dynamics, - i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'openmp': True, 'usempi': True} - -source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] -sources = [SOURCELOWER_TAR_GZ] - -preconfigopts = 'plumed patch -p -e gromacs-5.1.4 &&' - -configopts = ' -DGMX_GPU=OFF -DBUILD_SHARED_LIBS=OFF -DGMX_PREFER_STATIC_LIBS=ON -DGMX_DOUBLE=OFF -DGMX_SIMD=AVX2_256 -DGMX_BUILD_OWN_FFTW=ON -DGMX_MPI=ON' - -builddependencies = [ - ('CMake', '3.5.2'), -] - -dependencies = [ - ('Boost', '1.61.0', '-serial'), - ('PLUMED', '2.3.0') -] - -sanity_check_paths = { - 'files': ['bin/gmx_mpi'], - 'dirs': [''], -} - -moduleclass = 'bio' diff --git a/g/GROMACS/GROMACS-5.1.4-foss-2016a-hybrid-single-PLUMED.eb b/g/GROMACS/GROMACS-5.1.4-foss-2016a-hybrid-single-PLUMED.eb deleted file mode 100644 index 75acf808..00000000 --- a/g/GROMACS/GROMACS-5.1.4-foss-2016a-hybrid-single-PLUMED.eb +++ /dev/null @@ -1,35 +0,0 @@ -# IT4Innovations 2018 - -name = 'GROMACS' -version = '5.1.4' -versionsuffix = '-hybrid-single-PLUMED' - -homepage = 'http://www.gromacs.org' -description = """GROMACS is a versatile package to perform molecular dynamics, - i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'openmp': True, 'usempi': True} - -source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] -sources = [SOURCELOWER_TAR_GZ] - -preconfigopts = 'plumed patch -p -e gromacs-5.1.4 &&' - -configopts = ' -DGMX_GPU=OFF -DBUILD_SHARED_LIBS=OFF -DGMX_PREFER_STATIC_LIBS=ON -DGMX_DOUBLE=OFF -DGMX_SIMD=AVX2_256 -DGMX_BUILD_OWN_FFTW=ON -DGMX_MPI=ON' - -builddependencies = [ - ('CMake', '3.5.2'), -] - -dependencies = [ - ('Boost', '1.61.0', '-serial'), - ('PLUMED', '2.3.0') -] - -sanity_check_paths = { - 'files': ['bin/gmx_mpi'], - 'dirs': [''], -} - -moduleclass = 'bio' diff --git a/g/Geant4/Geant4-10.01.p01-intel-2015a.eb b/g/Geant4/Geant4-10.01.p01-intel-2015a.eb deleted file mode 100644 index 509565c6..00000000 --- a/g/Geant4/Geant4-10.01.p01-intel-2015a.eb +++ /dev/null @@ -1,26 +0,0 @@ -name = 'Geant4' -version = '10.01.p01' - -homepage = 'http://geant4.cern.ch/' -description = """Geant4 is a toolkit for the simulation of the passage of particles through matter. - Its areas of application include high energy, nuclear and accelerator physics, - as well as studies in medical and space science.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -source_urls = ['http://geant4.cern.ch/support/source'] -sources = ['%(namelower)s.%(version)s.tar.gz'] - -dependencies = [ - ('expat', '2.1.0'), - # recommended CLHEP version, see - # https://geant4.web.cern.ch/geant4/support/ReleaseNotes4.10.1.html#2. - ('CLHEP', '2.2.0.5'), -] - -builddependencies = [('CMake', '3.2.2')] - -configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" -configopts += "-DGEANT4_INSTALL_DATA=OFF" - -moduleclass = 'phys' diff --git a/g/Geant4/Geant4-10.01.p03-intel-2016a.eb b/g/Geant4/Geant4-10.01.p03-intel-2016a.eb deleted file mode 100644 index 1e25886f..00000000 --- a/g/Geant4/Geant4-10.01.p03-intel-2016a.eb +++ /dev/null @@ -1,26 +0,0 @@ -name = 'Geant4' -version = '10.01.p03' - -homepage = 'http://geant4.cern.ch/' -description = """Geant4 is a toolkit for the simulation of the passage of particles through matter. - Its areas of application include high energy, nuclear and accelerator physics, - as well as studies in medical and space science.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['http://geant4.cern.ch/support/source'] -sources = ['%(namelower)s.%(version)s.tar.gz'] - -dependencies = [ - ('expat', '2.1.0'), - # recommended CLHEP version, see - # https://geant4.web.cern.ch/geant4/support/ReleaseNotes4.10.1.html#2. - ('CLHEP', '2.2.0.8'), -] - -builddependencies = [('CMake', '3.4.3')] - -configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" -configopts += "-DGEANT4_INSTALL_DATA=OFF" - -moduleclass = 'phys' diff --git a/g/Geant4/Geant4-10.02.p01-intel-2016a.eb b/g/Geant4/Geant4-10.02.p01-intel-2016a.eb deleted file mode 100644 index dcb6682d..00000000 --- a/g/Geant4/Geant4-10.02.p01-intel-2016a.eb +++ /dev/null @@ -1,26 +0,0 @@ -name = 'Geant4' -version = '10.02.p01' - -homepage = 'http://geant4.cern.ch/' -description = """Geant4 is a toolkit for the simulation of the passage of particles through matter. - Its areas of application include high energy, nuclear and accelerator physics, - as well as studies in medical and space science.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['http://geant4.cern.ch/support/source'] -sources = ['%(namelower)s.%(version)s.tar.gz'] - -dependencies = [ - ('expat', '2.1.0'), - # recommended CLHEP version, see - # https://geant4.web.cern.ch/geant4/support/ReleaseNotes4.10.2.html#2. - ('CLHEP', '2.3.1.1'), -] - -builddependencies = [('CMake', '3.4.3')] - -configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" -configopts += "-DGEANT4_INSTALL_DATA=OFF" - -moduleclass = 'phys' diff --git a/g/Geant4/Geant4-9.5.p01-intel-2015a.eb b/g/Geant4/Geant4-9.5.p01-intel-2015a.eb deleted file mode 100644 index afc7f915..00000000 --- a/g/Geant4/Geant4-9.5.p01-intel-2015a.eb +++ /dev/null @@ -1,26 +0,0 @@ -name = 'Geant4' -version = '9.5.p01' - -homepage = 'http://geant4.cern.ch/' -description = """Geant4 is a toolkit for the simulation of the passage of particles through matter. - Its areas of application include high energy, nuclear and accelerator physics, - as well as studies in medical and space science.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -source_urls = ['http://geant4.cern.ch/support/source'] -sources = ['%(namelower)s.%(version)s.tar.gz'] - -dependencies = [ - ('expat', '2.1.0'), - # recommended CLHEP version, see - # https://geant4.web.cern.ch/geant4/support/ReleaseNotes4.9.5.html#2. - ('CLHEP', '2.1.1.0'), -] - -builddependencies = [('CMake', '2.8.4')] - -configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" -configopts += "-DGEANT4_INSTALL_DATA=OFF" - -moduleclass = 'phys' diff --git a/g/Geant4/Geant4-9.5.p02-intel-2016a.eb b/g/Geant4/Geant4-9.5.p02-intel-2016a.eb deleted file mode 100644 index 56b88c5e..00000000 --- a/g/Geant4/Geant4-9.5.p02-intel-2016a.eb +++ /dev/null @@ -1,26 +0,0 @@ -name = 'Geant4' -version = '9.5.p02' - -homepage = 'http://geant4.cern.ch/' -description = """Geant4 is a toolkit for the simulation of the passage of particles through matter. - Its areas of application include high energy, nuclear and accelerator physics, - as well as studies in medical and space science.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['http://geant4.cern.ch/support/source'] -sources = ['%(namelower)s.%(version)s.tar.gz'] - -dependencies = [ - ('expat', '2.1.0'), - # recommended CLHEP version, see - # https://geant4.web.cern.ch/geant4/support/ReleaseNotes4.9.5.html#2. - ('CLHEP', '2.1.1.0'), -] - -builddependencies = [('CMake', '3.4.3')] - -configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" -configopts += "-DGEANT4_INSTALL_DATA=OFF" - -moduleclass = 'phys' diff --git a/g/Geant4/Geant4-9.6.p04-intel-2015a.eb b/g/Geant4/Geant4-9.6.p04-intel-2015a.eb deleted file mode 100644 index 2bd2b22b..00000000 --- a/g/Geant4/Geant4-9.6.p04-intel-2015a.eb +++ /dev/null @@ -1,26 +0,0 @@ -name = 'Geant4' -version = '9.6.p04' - -homepage = 'http://geant4.cern.ch/' -description = """Geant4 is a toolkit for the simulation of the passage of particles through matter. - Its areas of application include high energy, nuclear and accelerator physics, - as well as studies in medical and space science.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -source_urls = ['http://geant4.cern.ch/support/source'] -sources = ['%(namelower)s.%(version)s.tar.gz'] - -dependencies = [ - ('expat', '2.1.0'), - # recommended CLHEP version, see - # https://geant4.web.cern.ch/geant4/support/ReleaseNotes4.9.6.html#2. - ('CLHEP', '2.1.3.1'), -] - -builddependencies = [('CMake', '3.1.3')] - -configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" -configopts += "-DGEANT4_INSTALL_DATA=OFF" - -moduleclass = 'phys' diff --git a/g/Geant4/Geant4-9.6.p04-intel-2016a.eb b/g/Geant4/Geant4-9.6.p04-intel-2016a.eb deleted file mode 100644 index b901fd4e..00000000 --- a/g/Geant4/Geant4-9.6.p04-intel-2016a.eb +++ /dev/null @@ -1,27 +0,0 @@ -name = 'Geant4' -version = '9.6.p04' - -homepage = 'http://geant4.cern.ch/' -description = """Geant4 is a toolkit for the simulation of the passage of particles through matter. - Its areas of application include high energy, nuclear and accelerator physics, - as well as studies in medical and space science.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['http://geant4.cern.ch/support/source'] -sources = ['%(namelower)s.%(version)s.tar.gz'] - -dependencies = [ - ('expat', '2.1.0'), - # recommended CLHEP version, see - # https://geant4.web.cern.ch/geant4/support/ReleaseNotes4.9.6.html#2. - ('CLHEP', '2.1.3.1'), -] -builddependencies = [ - ('CMake', '3.4.3'), -] - -configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" -configopts += "-DGEANT4_INSTALL_DATA=OFF" - -moduleclass = 'phys' diff --git a/g/Ghostscript/Ghostscript-9.16-intel-2015a.eb b/g/Ghostscript/Ghostscript-9.16-intel-2015a.eb deleted file mode 100644 index 8c4f96db..00000000 --- a/g/Ghostscript/Ghostscript-9.16-intel-2015a.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Ghostscript' -version = '9.16' - -homepage = 'http://ghostscript.com' -description = """Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to - different targets. It used to be part of the cups printing stack, but is no longer used for that.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -# lowopt (-O1) is used to avoid internal compiler error that is hit when -# -O2 is used -toolchainopts = {'pic': True, 'lowopt': True} - -source_urls = ["http://downloads.ghostscript.com/public/"] -sources = [SOURCELOWER_TAR_GZ] - -checksums = ['829319325bbdb83f5c81379a8f86f38f'] - -dependencies = [ - ('zlib', '1.2.8'), - ('libpng', '1.6.17'), - ('freetype', '2.6'), - ('fontconfig', '2.11.94'), - ('GLib', '2.44.1'), - ('libjpeg-turbo', '1.3.1'), # note: libjpeg-turbo 1.4.[01] doesn't work - ('expat', '2.1.0'), - ('cairo', '1.14.2'), - ('LibTIFF', '4.0.4'), -] - -configopts = "--with-system-libtiff --enable-dynamic" - -moduleclass = 'tools' diff --git a/g/Ghostscript/Ghostscript-9.19-intel-2016a.eb b/g/Ghostscript/Ghostscript-9.19-intel-2016a.eb deleted file mode 100644 index 0c84f260..00000000 --- a/g/Ghostscript/Ghostscript-9.19-intel-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Ghostscript' -version = '9.19' - -homepage = 'http://ghostscript.com' -description = """Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to - different targets. It used to be part of the cups printing stack, but is no longer used for that.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'pic': True} - -source_urls = [ - "https://github.com/ArtifexSoftware/ghostpdl-downloads/releases/download/gs%(version_major)s%(version_minor)s/"] -sources = ["ghostpdl-%(version)s.tar.bz2"] - -dependencies = [ - ('zlib', '1.2.8'), - ('libpng', '1.6.21'), - ('freetype', '2.6.3'), - ('fontconfig', '2.11.95'), - ('libjpeg-turbo', '1.4.2'), - ('expat', '2.1.1'), - ('GLib', '2.48.0'), - ('cairo', '1.14.6', '-GLib-2.48.0'), - ('LibTIFF', '4.0.6'), -] - -configopts = "--with-system-libtiff --enable-dynamic" - -moduleclass = 'tools' diff --git a/g/Ghostscript/Ghostscript-9.19-intel-2016b.eb b/g/Ghostscript/Ghostscript-9.19-intel-2016b.eb deleted file mode 100644 index abd49e88..00000000 --- a/g/Ghostscript/Ghostscript-9.19-intel-2016b.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Ghostscript' -version = '9.19' - -homepage = 'http://ghostscript.com' -description = """Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to - different targets. It used to be part of the cups printing stack, but is no longer used for that.""" - -toolchain = {'name': 'intel', 'version': '2016b'} -toolchainopts = {'pic': True} - -source_urls = [ - "https://github.com/ArtifexSoftware/ghostpdl-downloads/releases/download/gs%(version_major)s%(version_minor)s/"] -sources = ["ghostpdl-%(version)s.tar.bz2"] - -dependencies = [ - ('zlib', '1.2.8'), - ('libpng', '1.6.24'), - ('freetype', '2.6.5'), - ('libjpeg-turbo', '1.5.0'), - ('expat', '2.2.0'), - ('GLib', '2.49.5'), - ('cairo', '1.14.6'), - ('LibTIFF', '4.0.6'), -] - -configopts = "--with-system-libtiff --enable-dynamic" - -moduleclass = 'tools' diff --git a/g/Ghostscript/Ghostscript-9.20-intel-2016b.eb b/g/Ghostscript/Ghostscript-9.20-intel-2016b.eb deleted file mode 100644 index dca73426..00000000 --- a/g/Ghostscript/Ghostscript-9.20-intel-2016b.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Ghostscript' -version = '9.20' - -homepage = 'http://ghostscript.com' -description = """Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to - different targets. It used to be part of the cups printing stack, but is no longer used for that.""" - -toolchain = {'name': 'intel', 'version': '2016b'} -toolchainopts = {'pic': True} - -source_urls = [ - "https://github.com/ArtifexSoftware/ghostpdl-downloads/releases/download/gs%(version_major)s%(version_minor)s/"] -sources = ['ghostscript-%(version)s.tar.gz'] - -dependencies = [ - ('zlib', '1.2.8'), - ('libpng', '1.6.24'), - ('freetype', '2.6.5'), - ('libjpeg-turbo', '1.5.0'), - ('expat', '2.2.0'), - ('GLib', '2.49.5'), - ('cairo', '1.14.6'), - ('LibTIFF', '4.0.6'), -] - -configopts = "--with-system-libtiff --enable-dynamic" - -moduleclass = 'tools' diff --git a/g/Graph500/Graph500-3.0.0rc1-foss-2016a.eb b/g/Graph500/Graph500-3.0.0rc1-foss-2016a.eb deleted file mode 100644 index 4d27a79f..00000000 --- a/g/Graph500/Graph500-3.0.0rc1-foss-2016a.eb +++ /dev/null @@ -1,26 +0,0 @@ -# Golasowski Martin , Jiri Hanzelka -# , 2017 IT4Innovations -easyblock = 'MakeCp' - -name = 'Graph500' -version = '3.0.0rc1' - -homepage = 'http://graph500.org/' -description = 'Reference code of the Graph500 benchmark.' - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://github.com/graph500/graph500/archive/'] -sources = ['newreference.zip'] - -files_to_copy = [ - 'src/graph500_reference_bfs', - 'src/graph500_reference_bfs_sssp'] -prebuildopts = 'cd src &&' - -sanity_check_paths = { - 'files': ['graph500_reference_bfs', 'graph500_reference_bfs_sssp'], - 'dirs': [] -} - -moduleclass = 'tools' diff --git a/g/Graphviz/Graphviz-2.38.0-intel-2015a-Python-2.7.10.eb b/g/Graphviz/Graphviz-2.38.0-intel-2015a-Python-2.7.10.eb deleted file mode 100644 index 5582b036..00000000 --- a/g/Graphviz/Graphviz-2.38.0-intel-2015a-Python-2.7.10.eb +++ /dev/null @@ -1,76 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Graphviz' -version = '2.38.0' - -homepage = 'http://www.graphviz.org/' -description = """Graphviz is open source graph visualization software. Graph visualization - is a way of representing structural information as diagrams of - abstract graphs and networks. It has important applications in networking, - bioinformatics, software engineering, database and web design, machine learning, - and in visual interfaces for other technical domains.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -source_urls = ['http://www.graphviz.org/pub/graphviz/stable/SOURCES/'] -sources = [SOURCELOWER_TAR_GZ] - -python = 'Python' -pyver = '2.7.10' -versionsuffix = '-%s-%s' % (python, pyver) - -glibsuff = '-GLib-2.44.1' - -dependencies = [ - ('cairo', '1.14.2'), - ('expat', '2.1.0'), - ('freetype', '2.6'), - ('fontconfig', '2.11.94'), - ('Ghostscript', '9.16'), - ('GTS', '0.7.6', glibsuff), - ('Java', '1.7.0_80', '', True), - ('libpng', '1.6.17'), - ('Pango', '1.37.2'), - ('Perl', '5.20.0'), - (python, pyver), - ('Qt', '4.8.6', glibsuff), - ('SWIG', '3.0.7', versionsuffix), - ('Tcl', '8.6.4'), - ('zlib', '1.2.8'), -] - -builddependencies = [ - ('M4', '1.4.17'), -] - -patches = [ - 'Graphviz-2.38.0_icc_vmalloc.patch', - 'Graphviz-2.38.0_icc_sfio.patch', -] - -configopts = '--enable-guile=no --enable-lua=no --enable-ocaml=no ' -configopts += '--enable-r=no --enable-ruby=no ' - -prebuildopts = 'qmake -o cmd/gvedit/qMakefile cmd/gvedit/gvedit.pro && ' - -sanity_check_paths = { - 'files': [ - 'bin/cluster', - 'bin/dot', - 'bin/gvmap', - 'lib/libcdt.%s' % - SHLIB_EXT, - 'lib/libgvc.%s' % - SHLIB_EXT, - 'lib/libxdot.%s' % - SHLIB_EXT], - 'dirs': ['include']} - -modextrapaths = { - 'PYTHONPATH': 'lib/graphviz/python', - 'CLASSPATH': 'lib/graphviz/java/org/graphviz', - 'LD_LIBRARY_PATH': 'lib/graphviz/java', - 'TCLLIBPATH': 'lib/graphviz/tcl', -} - -moduleclass = 'vis' diff --git a/g/gensim/gensim-0.13.2-foss-2016a-Python-2.7.11.eb b/g/gensim/gensim-0.13.2-foss-2016a-Python-2.7.11.eb deleted file mode 100644 index 173f59cc..00000000 --- a/g/gensim/gensim-0.13.2-foss-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,50 +0,0 @@ -easyblock = 'Bundle' - -name = 'gensim' -version = '0.13.2' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://pypi.python.org/pypi/gensim' -description = """Gensim is a Python library for topic modelling, document indexing and similarity retrieval with - large corpora.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -# this is a bundle of Python packages -exts_defaultclass = 'PythonPackage' - -dependencies = [ - ('Python', '2.7.11'), - ('requests', '2.10.0', '-Python-%(pyver)s'), -] - -exts_list = [ - ('boto', '2.42.0', { - 'source_urls': ['https://pypi.python.org/packages/source/b/%(name)s'], - 'source_tmpl': '%(name)s-%(version)s.tar.gz', - }), - ('bz2file', '0.98', { - 'source_urls': ['https://pypi.python.org/packages/source/b/%(name)s'], - 'source_tmpl': '%(name)s-%(version)s.tar.gz', - }), - ('smart_open', '1.3.4', { - 'source_urls': ['https://pypi.python.org/packages/source/s/%(name)s'], - 'source_tmpl': '%(name)s-%(version)s.tar.gz', - }), - (name, version, { - 'source_urls': ['https://pypi.python.org/packages/source/g/%(name)s'], - }), -] - -# specify that Bundle easyblock should run a full sanity check, rather -# than just trying to load the module -full_sanity_check = True - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} - -moduleclass = 'lib' diff --git a/g/glproto/glproto-1.4.17-foss-2016a.eb b/g/glproto/glproto-1.4.17-foss-2016a.eb deleted file mode 100644 index 415535f2..00000000 --- a/g/glproto/glproto-1.4.17-foss-2016a.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'glproto' -version = '1.4.17' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = "X protocol and ancillary headers" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_PROTO_SOURCE] - -sanity_check_paths = { - 'files': [ - 'include/GL/%s.h' % - x for x in [ - 'glxint', - 'glxmd', - 'glxproto', - 'glxtokens', - 'internal/glcore']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/g/glproto/glproto-1.4.17-intel-2016a.eb b/g/glproto/glproto-1.4.17-intel-2016a.eb deleted file mode 100644 index 9ff9748f..00000000 --- a/g/glproto/glproto-1.4.17-intel-2016a.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'glproto' -version = '1.4.17' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = "X protocol and ancillary headers" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_PROTO_SOURCE] - -sanity_check_paths = { - 'files': [ - 'include/GL/%s.h' % - x for x in [ - 'glxint', - 'glxmd', - 'glxproto', - 'glxtokens', - 'internal/glcore']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/g/gnutls/gnutls-3.3.21-intel-2016a.eb b/g/gnutls/gnutls-3.3.21-intel-2016a.eb deleted file mode 100644 index b0926d4c..00000000 --- a/g/gnutls/gnutls-3.3.21-intel-2016a.eb +++ /dev/null @@ -1,59 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'gnutls' -version = '3.3.21' - -homepage = 'http://www.gnutls.org/' -description = """GnuTLS is a secure communications library implementing the SSL, TLS - and DTLS protocols and technologies around them. It provides a simple - C language application programming interface (API) to access the secure - communications protocols as well as APIs to parse and write X.509, PKCS #12, - OpenPGP and other required structures. It is aimed to be portable - and efficient with focus on security and interoperability.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['ftp://ftp.gnutls.org/gcrypt/gnutls/v%(version_major_minor)s'] -sources = [SOURCE_TAR_XZ] - -guilever = '1.8.8' -guileshortver = '.'.join(guilever.split('.')[:2]) -dependencies = [ - ('GMP', '6.1.0'), - ('nettle', '3.1.1'), - ('guile', guilever), - ('libtasn1', '4.7'), - ('libidn', '1.32'), - ('p11-kit', '0.23.2'), -] - -configopts = "--with-guile-site-dir=$EBROOTGUILE --enable-openssl-compatibility " - -sanity_check_paths = { - 'files': [ - 'bin/%s' % - x for x in [ - 'certtool', - 'crywrap', - 'gnutls-cli', - 'gnutls-cli-debug', - 'gnutls-serv', - 'ocsptool', - 'psktool', - 'srptool']] + - [ - 'lib/libgnutls%s' % - x for x in [ - '.%s' % - SHLIB_EXT, - 'xx.%s' % - SHLIB_EXT, - '-openssl.%s' % - SHLIB_EXT]] + - [ - 'lib/guile/%s/guile-gnutls-v-2.so' % - guileshortver], - 'dirs': ['include/gnutls'], -} - -moduleclass = 'system' diff --git a/g/gnutls/gnutls-3.4.11-foss-2016a.eb b/g/gnutls/gnutls-3.4.11-foss-2016a.eb deleted file mode 100644 index 256d390d..00000000 --- a/g/gnutls/gnutls-3.4.11-foss-2016a.eb +++ /dev/null @@ -1,59 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'gnutls' -version = '3.4.11' - -homepage = 'http://www.gnutls.org/' -description = """GnuTLS is a secure communications library implementing the SSL, TLS - and DTLS protocols and technologies around them. It provides a simple - C language application programming interface (API) to access the secure - communications protocols as well as APIs to parse and write X.509, PKCS #12, - OpenPGP and other required structures. It is aimed to be portable - and efficient with focus on security and interoperability.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['ftp://ftp.gnutls.org/gcrypt/gnutls/v%(version_major_minor)s'] -sources = [SOURCE_TAR_XZ] - -guilever = '1.8.8' -guileshortver = '.'.join(guilever.split('.')[:2]) -dependencies = [ - ('GMP', '6.1.0'), - ('nettle', '3.1.1'), - ('guile', guilever), - ('libtasn1', '4.7'), - ('libidn', '1.32'), - ('p11-kit', '0.23.2'), -] - -configopts = "--with-guile-site-dir=$EBROOTGUILE --enable-openssl-compatibility " - -sanity_check_paths = { - 'files': [ - 'bin/%s' % - x for x in [ - 'certtool', - 'crywrap', - 'gnutls-cli', - 'gnutls-cli-debug', - 'gnutls-serv', - 'ocsptool', - 'psktool', - 'srptool']] + - [ - 'lib/libgnutls%s' % - x for x in [ - '.%s' % - SHLIB_EXT, - 'xx.%s' % - SHLIB_EXT, - '-openssl.%s' % - SHLIB_EXT]] + - [ - 'lib/guile/%s/guile-gnutls-v-2.so' % - guileshortver], - 'dirs': ['include/gnutls'], -} - -moduleclass = 'system' diff --git a/g/grace/grace-5.1.25-intel-2015b-test.eb b/g/grace/grace-5.1.25-intel-2015b-test.eb deleted file mode 100644 index f09994bc..00000000 --- a/g/grace/grace-5.1.25-intel-2015b-test.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'grace' -version = '5.1.25' -versionsuffix = '-test' - -homepage = 'http://freecode.com/projects/grace' -description = """Grace is a WYSIWYG 2D plotting tool for X Windows System and Motif.""" - -source_urls = ['ftp://plasma-gate.weizmann.ac.il/pub/grace/src/stable'] -sources = [SOURCE_TAR_GZ] - -toolchain = {'name': 'intel', 'version': '2015b'} - -dependencies = [ - ('motif', '2.3.4', '-libX11-1.6.2'), - ('netCDF', '4.3.2'), -] - -runtest = 'tests' - -# we also need to run make links right before or after make install. -installopts = 'links' - -sanity_check_paths = { - 'files': ['bin/xmgrace'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/g/grace/grace-5.1.25-intel-2015b.eb b/g/grace/grace-5.1.25-intel-2015b.eb deleted file mode 100644 index c473d147..00000000 --- a/g/grace/grace-5.1.25-intel-2015b.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'grace' -version = '5.1.25' - -homepage = 'http://freecode.com/projects/grace' -description = """Grace is a WYSIWYG 2D plotting tool for X Windows System and Motif.""" - -source_urls = ['ftp://plasma-gate.weizmann.ac.il/pub/grace/src/stable'] -sources = [SOURCE_TAR_GZ] - -toolchain = {'name': 'intel', 'version': '2015b'} - -dependencies = [ - ('motif', '2.3.4', '-libX11-1.6.2'), - ('netCDF', '4.3.2'), -] - -runtest = 'tests' - -# we also need to run make links right before or after make install. -installopts = 'links' - -sanity_check_paths = { - 'files': ['bin/xmgrace'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/g/gtkglext/gtkglext-1.2.0-intel-2015b.eb b/g/gtkglext/gtkglext-1.2.0-intel-2015b.eb deleted file mode 100644 index cca9de47..00000000 --- a/g/gtkglext/gtkglext-1.2.0-intel-2015b.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'gtkglext' -version = '1.2.0' - -homepage = 'https://projects.gnome.org/gtkglext' -description = """GtkGLExt is an OpenGL extension to GTK+.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCE_TAR_GZ] - -patches = ['gtkglext-%(version)s_fix-gtk-compat.patch'] - -pangover = '1.37.1' -dependencies = [ - ('GTK+', '2.24.28'), - ('Pango', pangover), - ('pangox-compat', '0.0.2', '-Pango-%s' % pangover), -] - -sanity_check_paths = { - 'files': [ - 'lib/gtkglext-1.0/include/gdkglext-config.h', - 'lib/libgdkglext-x11-1.0.a', - 'lib/libgdkglext-x11-1.0.%s' % - SHLIB_EXT, - 'lib/libgtkglext-x11-1.0.a', - 'lib/libgtkglext-x11-1.0.%s' % - SHLIB_EXT], - 'dirs': [ - 'include/gtkglext-1.0/gdk', - 'include/gtkglext-1.0/gtk', - 'lib/pkgconfig'], -} - -moduleclass = 'vis' diff --git a/h/HDF5/HDF5-1.8.13-intel-2015b-no-mpi.eb b/h/HDF5/HDF5-1.8.13-intel-2015b-no-mpi.eb deleted file mode 100644 index a5a9805e..00000000 --- a/h/HDF5/HDF5-1.8.13-intel-2015b-no-mpi.eb +++ /dev/null @@ -1,28 +0,0 @@ -name = 'HDF5' -version = '1.8.13' -versionsuffix = '-intel-2015b-no-mpi' - -homepage = 'http://www.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} - -source_urls = [ - 'http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] -sources = [SOURCELOWER_TAR_GZ] - -patches = [ - 'HDF5-%(version)s_configure_intel.patch', - 'configure_libtool.patch', -] - -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - -dependencies = [ - ('zlib', '1.2.8'), - ('Szip', '2.1'), -] - -moduleclass = 'data' diff --git a/h/HDF5/HDF5-1.8.16-foss-2016a.eb b/h/HDF5/HDF5-1.8.16-foss-2016a.eb deleted file mode 100644 index 58a2386d..00000000 --- a/h/HDF5/HDF5-1.8.16-foss-2016a.eb +++ /dev/null @@ -1,27 +0,0 @@ -name = 'HDF5' -version = '1.8.16' - -homepage = 'http://www.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} - -source_urls = [ - 'http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] -sources = [SOURCELOWER_TAR_GZ] - -patches = [ - 'HDF5-1.8.15_configure_intel.patch', - 'configure_libtool.patch', -] - -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - -dependencies = [ - ('zlib', '1.2.8'), - ('Szip', '2.1'), -] - -moduleclass = 'data' diff --git a/h/HDF5/HDF5-1.8.16-intel-2015b-threadsafe.eb b/h/HDF5/HDF5-1.8.16-intel-2015b-threadsafe.eb deleted file mode 100644 index 55f33a87..00000000 --- a/h/HDF5/HDF5-1.8.16-intel-2015b-threadsafe.eb +++ /dev/null @@ -1,32 +0,0 @@ -name = 'HDF5' -version = '1.8.16' -versionsuffix = '-threadsafe' - -homepage = 'http://www.hdfgroup.org/HDF5/' -description = """HDF5 is a unique technology suite that makes possible the management of - extremely large and complex data collections. - -This is a thread-safe version, not necessarily thread-effecient. See https://gamma.hdfgroup.org/papers/features/mthdf/index.html - """ - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} - -source_urls = [ - 'http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] -sources = [SOURCELOWER_TAR_GZ] - -patches = [ - 'HDF5-1.8.15_configure_intel.patch', - 'configure_libtool.patch', -] - -configopts = '--enable-threadsafe' -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - -dependencies = [ - ('zlib', '1.2.8'), - ('Szip', '2.1'), -] - -moduleclass = 'data' diff --git a/h/HMMER/HMMER-3.1b2-foss-2016a.eb b/h/HMMER/HMMER-3.1b2-foss-2016a.eb deleted file mode 100644 index 76841e9d..00000000 --- a/h/HMMER/HMMER-3.1b2-foss-2016a.eb +++ /dev/null @@ -1,44 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Nils Christian , Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html -## - -easyblock = 'ConfigureMake' - -name = 'HMMER' -version = '3.1b2' - -homepage = 'http://hmmer.janelia.org/' -description = """HMMER is used for searching sequence databases for homologs of protein sequences, - and for making protein sequence alignments. It implements methods using probabilistic models - called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other - sequence alignment and database search tools based on older scoring methodology, - HMMER aims to be significantly more accurate and more able to detect remote homologs - because of the strength of its underlying mathematical models. In the past, this strength - came at significant computational expense, but in the new HMMER3 project, HMMER is now - essentially as fast as BLAST.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = ['hmmer-%(version)s-linux-intel-x86_64.tar.gz'] -source_urls = [ - 'http://selab.janelia.org/software/hmmer%(version_major)s/%(version)s/'] - -installopts = ' && cd easel && make install' - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["hmmemit", "hmmsearch", "hmmscan", - "esl-alimap", "esl-cluster", "esl-mask"]], - 'dirs': [] -} - -runtest = 'check' - -moduleclass = 'bio' diff --git a/h/HMMER/HMMER-3.1b2-intel-2015a.eb b/h/HMMER/HMMER-3.1b2-intel-2015a.eb deleted file mode 100644 index be31a5e8..00000000 --- a/h/HMMER/HMMER-3.1b2-intel-2015a.eb +++ /dev/null @@ -1,44 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Nils Christian , Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html -## - -easyblock = 'ConfigureMake' - -name = 'HMMER' -version = '3.1b2' - -homepage = 'http://hmmer.janelia.org/' -description = """HMMER is used for searching sequence databases for homologs of protein sequences, - and for making protein sequence alignments. It implements methods using probabilistic models - called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other - sequence alignment and database search tools based on older scoring methodology, - HMMER aims to be significantly more accurate and more able to detect remote homologs - because of the strength of its underlying mathematical models. In the past, this strength - came at significant computational expense, but in the new HMMER3 project, HMMER is now - essentially as fast as BLAST.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -sources = ['hmmer-%(version)s-linux-intel-x86_64.tar.gz'] -source_urls = [ - 'http://selab.janelia.org/software/hmmer%(version_major)s/%(version)s/'] - -installopts = ' && cd easel && make install' - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["hmmemit", "hmmsearch", "hmmscan", - "esl-alimap", "esl-cluster", "esl-mask"]], - 'dirs': [] -} - -runtest = 'check' - -moduleclass = 'bio' diff --git a/h/HTSlib/HTSlib-1.3-foss-2015g.eb b/h/HTSlib/HTSlib-1.3-foss-2015g.eb deleted file mode 100644 index 3ea3b4eb..00000000 --- a/h/HTSlib/HTSlib-1.3-foss-2015g.eb +++ /dev/null @@ -1,28 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# Swiss Institute of Bioinformatics -# Biozentrum - University of Basel - -easyblock = 'ConfigureMake' - -name = 'HTSlib' -version = '1.3' - -homepage = "http://www.htslib.org/" -description = """ A C library for reading/writing high-throughput sequencing data. - This package includes the utilities bgzip and tabix """ - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = [ - 'https://github.com/samtools/%(namelower)s/releases/download/%(version)s/'] -sources = [SOURCELOWER_TAR_BZ2] - -dependencies = [('zlib', '1.2.8')] - -sanity_check_paths = { - 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.%s" % SHLIB_EXT], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/h/Harminv/Harminv-1.4-intel-2015b.eb b/h/Harminv/Harminv-1.4-intel-2015b.eb deleted file mode 100644 index 7fe93748..00000000 --- a/h/Harminv/Harminv-1.4-intel-2015b.eb +++ /dev/null @@ -1,25 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-08-21_15-12-59 -easyblock = 'ConfigureMake' - -name = 'Harminv' -version = '1.4' - -homepage = 'http://ab-initio.mit.edu/wiki/index.php/Harminv' -description = """Harminv is a free program (and accompanying library) to solve the problem of harmonic inversion - given - a discrete-time, finite-length signal that consists of a sum of finitely-many sinusoids (possibly exponentially decaying) - in a given bandwidth, it determines the frequencies, decay constants, amplitudes, and phases of those sinusoids.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = { - 'opt': True, - 'unroll': True, - 'optarch': True, - 'pic': True, - 'cstd': 'c99'} - -source_urls = ['http://ab-initio.mit.edu/harminv/'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = "--with-pic --with-blas=mkl_em64t --with-lapack=mkl_em64t --enable-shared" - -moduleclass = 'math' diff --git a/h/Hypre/Hypre-2.10.0b-intel-2015b.eb b/h/Hypre/Hypre-2.10.0b-intel-2015b.eb deleted file mode 100644 index 4b2c0f1f..00000000 --- a/h/Hypre/Hypre-2.10.0b-intel-2015b.eb +++ /dev/null @@ -1,23 +0,0 @@ -name = 'Hypre' -version = '2.10.0b' - -homepage = "https://computation.llnl.gov/casc/linear_solvers/sls_hypre.html" -description = """Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. - The problems of interest arise in the simulation codes being developed at LLNL and elsewhere - to study physical phenomena in the defense, environmental, energy, and biological sciences.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True} - -# download via -# https://computation.llnl.gov/project/linear_solvers/download/hypre-2.10.0b_reg.php -sources = [SOURCELOWER_TAR_GZ] - -start_dir = "src" - -sanity_check_paths = { - 'files': ['lib/libHYPRE.a'], - 'dirs': ['include'] -} - -moduleclass = 'numlib' diff --git a/i/IMB/IMB-4.1-foss-2016a.eb b/i/IMB/IMB-4.1-foss-2016a.eb deleted file mode 100644 index 999782d6..00000000 --- a/i/IMB/IMB-4.1-foss-2016a.eb +++ /dev/null @@ -1,37 +0,0 @@ -easyblock = 'MakeCp' - -name = 'IMB' -version = '4.1' - -homepage = 'https://software.intel.com/en-us/articles/intel-mpi-benchmarks' -description = """ -The Intel® MPI Benchmarks perform a set of MPI performance measurements for point-to-point -and global communication operations for a range of message sizes. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = ['%(name)s_%(version)s.tgz'] -source_urls = ['https://software.intel.com/sites/default/files/managed/a3/b2/'] - -start_dir = 'src' -prebuildopts = 'export MPI_HOME=$EBROOTOPENMPI && ' -buildopts = "-f make_mpich MPI_HOME=$EBROOTOPENMPI" - -parallel = 1 - -files_to_copy = [(['src/IMB-*'], 'bin'), (['doc/IMB_Users_Guide.pdf'], 'doc')] - -sanity_check_paths = { - 'files': [ - 'bin/%s' % - binfile for binfile in [ - 'IMB-RMA', - 'IMB-EXT', - 'IMB-NBC', - 'IMB-MPI1']], - 'dirs': [ - 'bin', - 'doc']} - -moduleclass = 'perf' diff --git a/i/IOR/IOR-3.0.1-foss-2016a-mpiio.eb b/i/IOR/IOR-3.0.1-foss-2016a-mpiio.eb deleted file mode 100644 index 66d029ec..00000000 --- a/i/IOR/IOR-3.0.1-foss-2016a-mpiio.eb +++ /dev/null @@ -1,36 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# Swiss Institute of Bioinformatics -# Biozentrum - University of Basel - -easyblock = 'ConfigureMake' - -name = "IOR" -version = "3.0.1" -versionsuffix = "-mpiio" - -homepage = 'https://github.com/chaos/ior' -description = """ The IOR software is used for benchmarking parallel file systems using POSIX, MPIIO, - or HDF5 interfaces. """ - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [('https://github.com/chaos/ior/archive/')] -sources = ['%(version)s.tar.gz'] - -# configure opts listed below -# --with-PACKAGE[=ARG] use PACKAGE [ARG=yes] -# --without-PACKAGE do not use PACKAGE (same as --with-PACKAGE=no) -# --with-lustre support configurable Lustre striping values [default=check] -# --with-posix support IO with POSIX backend [default=yes] -# --with-mpiio support IO with MPI-IO backend [default=yes] -# --with-hdf5 support IO with HDF5 backend [default=no] -# --with-ncmpi support IO with NCMPI backend [default=no] -preconfigopts = "./bootstrap &&" - -sanity_check_paths = { - 'files': ["bin/ior"], - 'dirs': ["share"] -} - -moduleclass = 'tools' diff --git a/i/IOzone/IOzone-3.434-foss-2016a.eb b/i/IOzone/IOzone-3.434-foss-2016a.eb deleted file mode 100644 index 20ea96cc..00000000 --- a/i/IOzone/IOzone-3.434-foss-2016a.eb +++ /dev/null @@ -1,35 +0,0 @@ -easyblock = 'MakeCp' - -name = 'IOzone' -version = '3.434' - -homepage = 'http://www.iozone.org/' -description = """ -IOzone is a filesystem benchmark tool. The benchmark generates and measures a variety of file operations. Iozone has been ported - to many machines and runs under many operating systems. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = ['%(namelower)s%(version_major)s_%(version_minor)s.tar'] -source_urls = ['http://www.iozone.org/src/current/'] - -prebuildopts = 'cd src/current &&' -buildopts = 'linux-AMD64' - -files_to_copy = [ - (['src/current/iozone'], 'bin'), - (['src/current/%s' % docfile for docfile in ['gengnuplot.sh', 'report.pl', 'Changes.txt']], 'share/doc'), - (['src/current/%s' % docfile for docfile in ['gengnuplot.sh', 'Generate_Graphs', 'gnu3d.dem']], 'share'), - (['docs/iozone.1'], 'share/man/man1'), - (['docs/%s' % docfile for docfile in ['IOzone_msword_98.doc', 'IOzone_msword_98.pdf', 'Iozone_ps.gz', 'Run_rules.doc']], - 'share/doc'), -] - - -sanity_check_paths = { - 'files': ['bin/iozone'], - 'dirs': ['bin', 'share/doc', 'share/man'] -} - -moduleclass = 'tools' diff --git a/i/IPython/IPython-4.2.0-intel-2016a-Python-2.7.11.eb b/i/IPython/IPython-4.2.0-intel-2016a-Python-2.7.11.eb deleted file mode 100644 index 5f2b8712..00000000 --- a/i/IPython/IPython-4.2.0-intel-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,148 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# sciCORE - University of Basel -# SIB Swiss Institute of Bioinformatics - -easyblock = 'Bundle' - -name = 'IPython' -version = '4.2.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://ipython.org/index.html' -description = """IPython provides a rich architecture for interactive computing with: - Powerful interactive shells (terminal and Qt-based). - A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. - Support for interactive data visualization and use of GUI toolkits. - Flexible, embeddable interpreters to load into your own projects. - Easy to use, high performance tools for parallel computing.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -dependencies = [ - ('Python', '2.7.11'), - ('PyZMQ', '15.2.0', '%s-zmq4' % versionsuffix), - ('testpath', '0.3', versionsuffix), -] - -# this is a bundle of Python packages -exts_defaultclass = 'PythonPackage' -exts_filter = ("python -c 'import %(ext_name)s'", '') - -exts_list = [ - ('pysqlite', '2.8.2', { - 'modulename': 'pysqlite2', - 'source_urls': ['https://pypi.python.org/packages/source/p/pysqlite/'], - }), - ('requests', '2.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/r/requests/'], - }), - ('nbformat', '4.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nbformat/'], - }), - ('Pygments', '2.1.3', { - 'source_urls': ['https://pypi.python.org/packages/source/P/Pygments/'], - }), - ('singledispatch', '3.4.0.3', { - 'source_urls': ['https://pypi.python.org/packages/source/s/singledispatch/'], - }), - ('backports.ssl_match_hostname', '3.5.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/b/backports.ssl_match_hostname/'], - }), - ('certifi', '2016.2.28', { - 'source_urls': ['https://pypi.python.org/packages/source/c/certifi/'], - }), - ('backports_abc', '0.4', { - 'source_urls': ['https://pypi.python.org/packages/source/b/backports_abc/'], - }), - ('tornado', '4.3', { - 'source_urls': ['https://pypi.python.org/packages/source/t/tornado/'], - }), - ('MarkupSafe', '0.23', { - 'source_urls': ['https://pypi.io/packages/source/M/MarkupSafe/'], - 'modulename': 'markupsafe', - }), - ('Jinja2', '2.8', { - 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], - }), - ('vcversioner', '2.16.0.0', { - 'source_urls': ['https://pypi.python.org/packages/source/v/vcversioner/'], - }), - ('jupyter_client', '4.2.2', { - 'source_urls': ['https://pypi.python.org/packages/source/j/jupyter_client/'], - }), - ('functools32', '3.2.3-2', { - 'source_urls': ['https://pypi.python.org/packages/source/f/functools32/'], - }), - ('jsonschema', '2.5.1', { - 'source_urls': ['https://pypi.python.org/packages/source/j/jsonschema/'], - }), - ('mistune', '0.7.2', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mistune/'], - }), - ('ptyprocess', '0.5.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/ptyprocess/'], - }), - ('terminado', '0.6', { - 'source_urls': ['https://pypi.python.org/packages/source/t/terminado/'], - }), - ('setuptools_scm', '1.11.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools_scm/'], - 'source_tmpl': 'setuptools_scm-%(version)s.tar.gz', - }), - ('simplegeneric', '0.8.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/simplegeneric/'], - 'source_tmpl': 'simplegeneric-%(version)s.zip', - }), - ('path.py', '8.1.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/path.py/'], - 'modulename': 'path', - }), - ('ipython_genutils', '0.1.0', { - 'source_urls': ['https://pypi.python.org/packages/source/i/ipython_genutils/'], - }), - ('pathlib2', '2.1.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pathlib2/'], - }), - ('pickleshare', '0.7.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pickleshare/'], - }), - ('traitlets', '4.2.1', { - 'source_urls': ['https://pypi.python.org/packages/source/t/traitlets/'], - }), - ('notebook', '4.2.0', { - 'source_urls': ['https://pypi.python.org/packages/source/n/notebook/'], - }), - ('jupyter_core', '4.1.0', { - 'source_urls': ['https://pypi.python.org/packages/source/j/jupyter_core/'], - }), - ('ipykernel', '4.3.1', { - 'source_urls': ['https://pypi.python.org/packages/source/i/ipykernel/'], - }), - ('pexpect', '4.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pexpect/'], - }), - ('backports.shutil_get_terminal_size', '1.0.0', { - 'source_urls': ['https://pypi.python.org/packages/source/b/backports.shutil_get_terminal_size/'], - }), - ('ipython', version, { - 'source_urls': ['https://pypi.python.org/packages/source/i/ipython/'], - 'modulename': 'IPython', - }), -] - -modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} - -sanity_check_paths = { - 'files': ['bin/ipython'], - 'dirs': ['lib/python%(pyshortver)s/site-packages/IPython'], -} - -sanity_check_commands = [ - ('ipython -h', ''), - ('ipython notebook --help', ''), - ('iptest', ''), - ('iptest2', ''), -] - -moduleclass = 'tools' diff --git a/i/IPython/IPython-5.1.0-foss-2016b-Python-2.7.12.eb b/i/IPython/IPython-5.1.0-foss-2016b-Python-2.7.12.eb deleted file mode 100644 index df95bd62..00000000 --- a/i/IPython/IPython-5.1.0-foss-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,155 +0,0 @@ -easyblock = 'Bundle' - -name = 'IPython' -version = '5.1.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://ipython.org/index.html' -description = """IPython provides a rich architecture for interactive computing with: - Powerful interactive shells (terminal and Qt-based). - A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. - Support for interactive data visualization and use of GUI toolkits. - Flexible, embeddable interpreters to load into your own projects. - Easy to use, high performance tools for parallel computing.""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -dependencies = [ - ('Python', '2.7.12'), - ('PyZMQ', '16.0.2', '%s-zmq4' % versionsuffix), - ('testpath', '0.3', versionsuffix), - # required by 'nbconvert', but causes problems w.r.t. 'backports' module... - # see https://github.com/hpcugent/easybuild-easyconfigs/issues/3825 - #('entrypoints', '0.2.2', versionsuffix), - ('path.py', '8.2.1', versionsuffix), - ('prompt-toolkit', '1.0.6', versionsuffix), -] - -# this is a bundle of Python packages -# XXX: the wheel packages (testpath, entrypoints, path.py, prompt-toolkit) have -# to be included as dependencies because bundling wheels does not work -exts_defaultclass = 'PythonPackage' -exts_filter = ("python -c 'import %(ext_name)s'", '') - -exts_list = [ - ('nose', '1.3.7', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('requests', '2.11.0', { - 'source_urls': ['https://pypi.python.org/packages/source/r/requests/'], - }), - ('nbformat', '4.1.0', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nbformat/'], - }), - ('Pygments', '2.1.3', { - 'source_urls': ['https://pypi.python.org/packages/source/P/Pygments/'], - 'modulename': 'pygments', - }), - ('singledispatch', '3.4.0.3', { - 'source_urls': ['https://pypi.python.org/packages/source/s/singledispatch/'], - }), - ('certifi', '2016.8.8', { - 'source_urls': ['https://pypi.python.org/packages/source/c/certifi/'], - }), - ('backports_abc', '0.4', { - 'source_urls': ['https://pypi.python.org/packages/source/b/backports_abc/'], - }), - ('tornado', '4.4.1', { - 'source_urls': ['https://pypi.python.org/packages/source/t/tornado/'], - }), - ('MarkupSafe', '0.23', { - 'source_urls': ['https://pypi.python.org/packages/source/M/MarkupSafe/'], - 'modulename': 'markupsafe', - }), - ('Jinja2', '2.8', { - 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], - 'modulename': 'jinja2', - }), - ('jupyter_client', '4.3.0', { - 'source_urls': ['https://pypi.python.org/packages/source/j/jupyter_client/'], - }), - ('functools32', '3.2.3-2', { - 'source_urls': ['https://pypi.python.org/packages/source/f/functools32/'], - }), - ('jsonschema', '2.5.1', { - 'source_urls': ['https://pypi.python.org/packages/source/j/jsonschema/'], - }), - ('mistune', '0.7.3', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mistune/'], - }), - ('ptyprocess', '0.5.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/ptyprocess/'], - }), - ('terminado', '0.6', { - 'source_urls': ['https://pypi.python.org/packages/source/t/terminado/'], - }), - ('setuptools', '25.2.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('simplegeneric', '0.8.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/simplegeneric/'], - 'source_tmpl': 'simplegeneric-%(version)s.zip', - }), - ('ipython_genutils', '0.1.0', { - 'source_urls': ['https://pypi.python.org/packages/source/i/ipython_genutils/'], - }), - ('pathlib2', '2.1.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pathlib2/'], - }), - ('pickleshare', '0.7.4', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pickleshare/'], - }), - ('traitlets', '4.2.2', { - 'source_urls': ['https://pypi.python.org/packages/source/t/traitlets/'], - }), - ('notebook', '4.2.2', { - 'source_urls': ['https://pypi.python.org/packages/source/n/notebook/'], - }), - ('jupyter_core', '4.1.1', { - 'source_urls': ['https://pypi.python.org/packages/source/j/jupyter_core/'], - }), - ('ipykernel', '4.4.1', { - 'source_urls': ['https://pypi.python.org/packages/source/i/ipykernel/'], - }), - ('pexpect', '4.2.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pexpect/'], - }), - # disabled because entrypoints on which this depends pull in configparser, which causes problems - # see https://github.com/hpcugent/easybuild-easyconfigs/issues/3825 - #('nbconvert', '4.2.0', { - # 'source_urls': ['https://pypi.python.org/packages/source/n/nbconvert/'], - #}), - ('backports.shutil_get_terminal_size', '1.0.0', { - 'source_urls': ['https://pypi.python.org/packages/source/b/backports.shutil_get_terminal_size/'], - }), - ('decorator', '4.0.10', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('ipython', version, { - 'source_urls': ['https://pypi.python.org/packages/source/i/ipython/'], - 'patches': ['ipython-5.0.0_fix-test-paths-symlink.patch'], - 'modulename': 'IPython', - }), - ('ipywidgets', '5.2.2', { - 'source_urls': ['https://pypi.python.org/packages/source/i/ipywidgets/'], - }), - ('widgetsnbextension', '1.2.6', { - 'source_urls': ['https://pypi.python.org/packages/source/w/widgetsnbextension/'], - }), -] - -modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} - -sanity_check_paths = { - 'files': ['bin/ipython'], - 'dirs': ['lib/python%(pyshortver)s/site-packages/IPython'], -} - -sanity_check_commands = [ - ('ipython -h', ''), - ('ipython notebook --help', ''), - ('iptest', ''), - ('iptest2', ''), -] - -moduleclass = 'tools' diff --git a/i/IPython/IPython-5.1.0-intel-2016b-Python-2.7.12.eb b/i/IPython/IPython-5.1.0-intel-2016b-Python-2.7.12.eb deleted file mode 100644 index d3bbfe47..00000000 --- a/i/IPython/IPython-5.1.0-intel-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,155 +0,0 @@ -easyblock = 'Bundle' - -name = 'IPython' -version = '5.1.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://ipython.org/index.html' -description = """IPython provides a rich architecture for interactive computing with: - Powerful interactive shells (terminal and Qt-based). - A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. - Support for interactive data visualization and use of GUI toolkits. - Flexible, embeddable interpreters to load into your own projects. - Easy to use, high performance tools for parallel computing.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -dependencies = [ - ('Python', '2.7.12'), - ('PyZMQ', '15.4.0', '%s-zmq4' % versionsuffix), - ('testpath', '0.3', versionsuffix), - # required by 'nbconvert', but causes problems w.r.t. 'backports' module... - # see https://github.com/hpcugent/easybuild-easyconfigs/issues/3825 - #('entrypoints', '0.2.2', versionsuffix), - ('path.py', '8.2.1', versionsuffix), - ('prompt-toolkit', '1.0.6', versionsuffix), -] - -# this is a bundle of Python packages -# XXX: the wheel packages (testpath, entrypoints, path.py, prompt-toolkit) have -# to be included as dependencies because bundling wheels does not work -exts_defaultclass = 'PythonPackage' -exts_filter = ("python -c 'import %(ext_name)s'", '') - -exts_list = [ - ('nose', '1.3.7', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('requests', '2.11.0', { - 'source_urls': ['https://pypi.python.org/packages/source/r/requests/'], - }), - ('nbformat', '4.1.0', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nbformat/'], - }), - ('Pygments', '2.1.3', { - 'source_urls': ['https://pypi.python.org/packages/source/P/Pygments/'], - 'modulename': 'pygments', - }), - ('singledispatch', '3.4.0.3', { - 'source_urls': ['https://pypi.python.org/packages/source/s/singledispatch/'], - }), - ('certifi', '2016.8.8', { - 'source_urls': ['https://pypi.python.org/packages/source/c/certifi/'], - }), - ('backports_abc', '0.4', { - 'source_urls': ['https://pypi.python.org/packages/source/b/backports_abc/'], - }), - ('tornado', '4.4.1', { - 'source_urls': ['https://pypi.python.org/packages/source/t/tornado/'], - }), - ('MarkupSafe', '0.23', { - 'source_urls': ['https://pypi.python.org/packages/source/M/MarkupSafe/'], - 'modulename': 'markupsafe', - }), - ('Jinja2', '2.8', { - 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], - 'modulename': 'jinja2', - }), - ('jupyter_client', '4.3.0', { - 'source_urls': ['https://pypi.python.org/packages/source/j/jupyter_client/'], - }), - ('functools32', '3.2.3-2', { - 'source_urls': ['https://pypi.python.org/packages/source/f/functools32/'], - }), - ('jsonschema', '2.5.1', { - 'source_urls': ['https://pypi.python.org/packages/source/j/jsonschema/'], - }), - ('mistune', '0.7.3', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mistune/'], - }), - ('ptyprocess', '0.5.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/ptyprocess/'], - }), - ('terminado', '0.6', { - 'source_urls': ['https://pypi.python.org/packages/source/t/terminado/'], - }), - ('setuptools', '25.2.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('simplegeneric', '0.8.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/simplegeneric/'], - 'source_tmpl': 'simplegeneric-%(version)s.zip', - }), - ('ipython_genutils', '0.1.0', { - 'source_urls': ['https://pypi.python.org/packages/source/i/ipython_genutils/'], - }), - ('pathlib2', '2.1.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pathlib2/'], - }), - ('pickleshare', '0.7.4', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pickleshare/'], - }), - ('traitlets', '4.2.2', { - 'source_urls': ['https://pypi.python.org/packages/source/t/traitlets/'], - }), - ('notebook', '4.2.2', { - 'source_urls': ['https://pypi.python.org/packages/source/n/notebook/'], - }), - ('jupyter_core', '4.1.1', { - 'source_urls': ['https://pypi.python.org/packages/source/j/jupyter_core/'], - }), - ('ipykernel', '4.4.1', { - 'source_urls': ['https://pypi.python.org/packages/source/i/ipykernel/'], - }), - ('pexpect', '4.2.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pexpect/'], - }), - # disabled because entrypoints on which this depends pull in configparser, which causes problems - # see https://github.com/hpcugent/easybuild-easyconfigs/issues/3825 - #('nbconvert', '4.2.0', { - # 'source_urls': ['https://pypi.python.org/packages/source/n/nbconvert/'], - #}), - ('backports.shutil_get_terminal_size', '1.0.0', { - 'source_urls': ['https://pypi.python.org/packages/source/b/backports.shutil_get_terminal_size/'], - }), - ('decorator', '4.0.10', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('ipython', version, { - 'source_urls': ['https://pypi.python.org/packages/source/i/ipython/'], - 'patches': ['ipython-5.0.0_fix-test-paths-symlink.patch'], - 'modulename': 'IPython', - }), - ('ipywidgets', '5.2.2', { - 'source_urls': ['https://pypi.python.org/packages/source/i/ipywidgets/'], - }), - ('widgetsnbextension', '1.2.6', { - 'source_urls': ['https://pypi.python.org/packages/source/w/widgetsnbextension/'], - }), -] - -modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} - -sanity_check_paths = { - 'files': ['bin/ipython'], - 'dirs': ['lib/python%(pyshortver)s/site-packages/IPython'], -} - -sanity_check_commands = [ - ('ipython -h', ''), - ('ipython notebook --help', ''), - ('iptest', ''), - ('iptest2', ''), -] - -moduleclass = 'tools' diff --git a/i/ImageMagick/ImageMagick-6.9.4-8-intel-2016a.eb b/i/ImageMagick/ImageMagick-6.9.4-8-intel-2016a.eb deleted file mode 100644 index 7d930a6b..00000000 --- a/i/ImageMagick/ImageMagick-6.9.4-8-intel-2016a.eb +++ /dev/null @@ -1,45 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'ImageMagick' -version = '6.9.4-8' - -homepage = 'http://www.imagemagick.org/' -description = """ImageMagick is a software suite to create, edit, compose, or convert bitmap images""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_XZ] -source_urls = ['http://www.imagemagick.org/download'] - -dependencies = [ - ('bzip2', '1.0.6'), - ('freetype', '2.6.3'), - ('Ghostscript', '9.19'), - ('JasPer', '1.900.1'), - ('libjpeg-turbo', '1.4.2'), - ('LibTIFF', '4.0.6'), - ('libX11', '1.6.3'), - ('libXext', '1.3.3'), - ('libXt', '1.1.5'), - ('LittleCMS', '2.7'), -] - -builddependencies = [ - ('pkg-config', '0.29'), -] - -configopts = "--with-gslib --with-x" - -sanity_check_paths = { - 'files': [], - 'dirs': [ - 'bin', - 'etc/%(name)s-%(version_major)s', - 'include/%(name)s-%(version_major)s', - 'lib', - 'share'], -} - -modextravars = {'MAGICK_HOME': '%(installdir)s'} - -moduleclass = 'vis' diff --git a/i/ImageMagick/ImageMagick-7.0.1-6-intel-2016a.eb b/i/ImageMagick/ImageMagick-7.0.1-6-intel-2016a.eb deleted file mode 100644 index 487735af..00000000 --- a/i/ImageMagick/ImageMagick-7.0.1-6-intel-2016a.eb +++ /dev/null @@ -1,45 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'ImageMagick' -version = '7.0.1-6' - -homepage = 'http://www.imagemagick.org/' -description = """ImageMagick is a software suite to create, edit, compose, or convert bitmap images""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_XZ] -source_urls = ['http://www.imagemagick.org/download'] - -dependencies = [ - ('bzip2', '1.0.6'), - ('freetype', '2.6.3'), - ('Ghostscript', '9.19'), - ('JasPer', '1.900.1'), - ('libjpeg-turbo', '1.4.2'), - ('LibTIFF', '4.0.6'), - ('libX11', '1.6.3'), - ('libXext', '1.3.3'), - ('libXt', '1.1.5'), - ('LittleCMS', '2.7'), -] - -builddependencies = [ - ('pkg-config', '0.29'), -] - -configopts = "--with-gslib --with-x" - -sanity_check_paths = { - 'files': [], - 'dirs': [ - 'bin', - 'etc/%(name)s-%(version_major)s', - 'include/%(name)s-%(version_major)s', - 'lib', - 'share'], -} - -modextravars = {'MAGICK_HOME': '%(installdir)s'} - -moduleclass = 'vis' diff --git a/i/ImageMagick/ImageMagick-7.0.1-9-intel-2016a.eb b/i/ImageMagick/ImageMagick-7.0.1-9-intel-2016a.eb deleted file mode 100644 index 352567ee..00000000 --- a/i/ImageMagick/ImageMagick-7.0.1-9-intel-2016a.eb +++ /dev/null @@ -1,45 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'ImageMagick' -version = '7.0.1-9' - -homepage = 'http://www.imagemagick.org/' -description = """ImageMagick is a software suite to create, edit, compose, or convert bitmap images""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_XZ] -source_urls = ['http://www.imagemagick.org/download'] - -dependencies = [ - ('bzip2', '1.0.6'), - ('freetype', '2.6.3'), - ('Ghostscript', '9.19'), - ('JasPer', '1.900.1'), - ('libjpeg-turbo', '1.4.2'), - ('LibTIFF', '4.0.6'), - ('libX11', '1.6.3'), - ('libXext', '1.3.3'), - ('libXt', '1.1.5'), - ('LittleCMS', '2.7'), -] - -builddependencies = [ - ('pkg-config', '0.29'), -] - -configopts = "--with-gslib --with-x" - -sanity_check_paths = { - 'files': [], - 'dirs': [ - 'bin', - 'etc/%(name)s-%(version_major)s', - 'include/%(name)s-%(version_major)s', - 'lib', - 'share'], -} - -modextravars = {'MAGICK_HOME': '%(installdir)s'} - -moduleclass = 'vis' diff --git a/i/ImageMagick/ImageMagick-7.0.2-9-intel-2016a.eb b/i/ImageMagick/ImageMagick-7.0.2-9-intel-2016a.eb deleted file mode 100644 index e693333c..00000000 --- a/i/ImageMagick/ImageMagick-7.0.2-9-intel-2016a.eb +++ /dev/null @@ -1,49 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Ravi Tripathi -# Email: ravi89@uab.edu - -easyblock = 'ConfigureMake' - -name = 'ImageMagick' -version = '7.0.2-9' - -homepage = 'http://www.imagemagick.org/' -description = """ImageMagick is a software suite to create, edit, compose, or convert bitmap images""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_XZ] -source_urls = ['http://www.imagemagick.org/download'] - -dependencies = [ - ('bzip2', '1.0.6'), - ('freetype', '2.6.3'), - ('Ghostscript', '9.19'), - ('JasPer', '1.900.1'), - ('libjpeg-turbo', '1.4.2'), - ('LibTIFF', '4.0.6'), - ('libX11', '1.6.3'), - ('libXext', '1.3.3'), - ('libXt', '1.1.5'), - ('LittleCMS', '2.7'), -] - -builddependencies = [ - ('pkg-config', '0.29'), -] - -configopts = "--with-gslib --with-x" - -sanity_check_paths = { - 'files': [], - 'dirs': [ - 'bin', - 'etc/%(name)s-%(version_major)s', - 'include/%(name)s-%(version_major)s', - 'lib', - 'share'], -} - -modextravars = {'MAGICK_HOME': '%(installdir)s'} - -moduleclass = 'vis' diff --git a/i/ImageMagick/ImageMagick-7.0.3-1-intel-2016b.eb b/i/ImageMagick/ImageMagick-7.0.3-1-intel-2016b.eb deleted file mode 100644 index 52e0215c..00000000 --- a/i/ImageMagick/ImageMagick-7.0.3-1-intel-2016b.eb +++ /dev/null @@ -1,46 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Ravi Tripathi -# Email: ravi89@uab.edu - -easyblock = 'ConfigureMake' - -name = 'ImageMagick' -version = '7.0.3-1' - -homepage = 'http://www.imagemagick.org/' -description = """ImageMagick is a software suite to create, edit, compose, or convert bitmap images""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -sources = [SOURCE_TAR_XZ] -source_urls = ['http://www.imagemagick.org/download'] - -dependencies = [ - ('bzip2', '1.0.6'), - ('X11', '20160819'), - ('Ghostscript', '9.19'), - ('JasPer', '1.900.1'), - ('libjpeg-turbo', '1.5.0'), - ('LibTIFF', '4.0.6'), - ('LittleCMS', '2.8'), -] - -builddependencies = [ - ('pkg-config', '0.29.1'), -] - -configopts = "--with-gslib --with-x" - -sanity_check_paths = { - 'files': [], - 'dirs': [ - 'bin', - 'etc/%(name)s-%(version_major)s', - 'include/%(name)s-%(version_major)s', - 'lib', - 'share'], -} - -modextravars = {'MAGICK_HOME': '%(installdir)s'} - -moduleclass = 'vis' diff --git a/i/inputproto/inputproto-2.3-intel-2015b.eb b/i/inputproto/inputproto-2.3-intel-2015b.eb deleted file mode 100644 index 7b0920e9..00000000 --- a/i/inputproto/inputproto-2.3-intel-2015b.eb +++ /dev/null @@ -1,26 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-06-29_22-18-38 -easyblock = 'ConfigureMake' - -name = 'inputproto' -version = '2.3' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X.org InputProto protocol headers.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] - -sanity_check_paths = { - 'files': [ - 'include/X11/extensions/%s' % - x for x in [ - 'XI2.h', - 'XI.h', - 'XIproto.h', - 'XI2proto.h']], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/k/Kraken/Kraken-0.10.5-beta-foss-2016a-Perl-5.22.1.eb b/k/Kraken/Kraken-0.10.5-beta-foss-2016a-Perl-5.22.1.eb deleted file mode 100644 index 8eaaba57..00000000 --- a/k/Kraken/Kraken-0.10.5-beta-foss-2016a-Perl-5.22.1.eb +++ /dev/null @@ -1,64 +0,0 @@ -easyblock = 'PackedBinary' - -name = 'Kraken' -version = '0.10.5-beta' -versionsuffix = '-Perl-%(perlver)s' - -homepage = 'http://ccb.jhu.edu/software/kraken/' -description = """Kraken is a system for assigning taxonomic labels to short DNA sequences, - usually obtained through metagenomic studies. Previous attempts by other - bioinformatics software to accomplish this task have often used sequence - alignment or machine learning techniques that were quite slow, leading to - the development of less sensitive but much faster abundance estimation - programs. Kraken aims to achieve high sensitivity and high speed by - utilizing exact alignments of k-mers and a novel classification algorithm.""" - -# Part is compiled with CXX, the rest is in Perl -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'openmp': True} - -source_urls = ['http://ccb.jhu.edu/software/kraken/dl/'] -sources = [SOURCELOWER_TGZ] - -patches = ['Kraken_%(version)s_makefile.patch'] - -dependencies = [ - ('Perl', '5.22.1'), - ('Jellyfish', '1.1.11'), - ('wget', '1.17.1'), -] - -install_cmd = 'cd %(builddir)s/%(namelower)s-%(version)s && ' -install_cmd += './install_kraken.sh %(installdir)s' - -sanity_check_paths = { - 'files': [ - 'add_to_library.sh', - 'build_kraken_db.sh', - 'check_for_jellyfish.sh', - 'classify', - 'clean_db.sh', - 'cp_into_tempfile.pl', - 'db_shrink', - 'db_sort', - 'download_genomic_library.sh', - 'download_taxonomy.sh', - 'kraken', - 'kraken-build', - 'kraken-filter', - 'krakenlib.pm', - 'kraken-mpa-report', - 'kraken-report', - 'kraken-translate', - 'make_seqid_to_taxid_map', - 'read_merger.pl', - 'report_gi_numbers.pl', - 'set_lcas', - 'shrink_db.sh', - 'standard_installation.sh', - 'upgrade_db.sh', - 'verify_gi_numbers.pl'], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/k/Kraken/Kraken-0.10.5-beta-foss-2016b-Perl-5.24.0.eb b/k/Kraken/Kraken-0.10.5-beta-foss-2016b-Perl-5.24.0.eb deleted file mode 100644 index 6bf8f8f4..00000000 --- a/k/Kraken/Kraken-0.10.5-beta-foss-2016b-Perl-5.24.0.eb +++ /dev/null @@ -1,64 +0,0 @@ -easyblock = 'PackedBinary' - -name = 'Kraken' -version = '0.10.5-beta' -versionsuffix = '-Perl-%(perlver)s' - -homepage = 'http://ccb.jhu.edu/software/kraken/' -description = """Kraken is a system for assigning taxonomic labels to short DNA sequences, - usually obtained through metagenomic studies. Previous attempts by other - bioinformatics software to accomplish this task have often used sequence - alignment or machine learning techniques that were quite slow, leading to - the development of less sensitive but much faster abundance estimation - programs. Kraken aims to achieve high sensitivity and high speed by - utilizing exact alignments of k-mers and a novel classification algorithm.""" - -# Part is compiled with CXX, the rest is in Perl -toolchain = {'name': 'foss', 'version': '2016b'} -toolchainopts = {'openmp': True} - -source_urls = ['http://ccb.jhu.edu/software/kraken/dl/'] -sources = [SOURCELOWER_TGZ] - -patches = ['Kraken_%(version)s_makefile.patch'] - -dependencies = [ - ('Perl', '5.24.0'), - ('Jellyfish', '1.1.11'), - ('wget', '1.17.1'), -] - -install_cmd = 'cd %(builddir)s/%(namelower)s-%(version)s && ' -install_cmd += './install_kraken.sh %(installdir)s' - -sanity_check_paths = { - 'files': [ - 'add_to_library.sh', - 'build_kraken_db.sh', - 'check_for_jellyfish.sh', - 'classify', - 'clean_db.sh', - 'cp_into_tempfile.pl', - 'db_shrink', - 'db_sort', - 'download_genomic_library.sh', - 'download_taxonomy.sh', - 'kraken', - 'kraken-build', - 'kraken-filter', - 'krakenlib.pm', - 'kraken-mpa-report', - 'kraken-report', - 'kraken-translate', - 'make_seqid_to_taxid_map', - 'read_merger.pl', - 'report_gi_numbers.pl', - 'set_lcas', - 'shrink_db.sh', - 'standard_installation.sh', - 'upgrade_db.sh', - 'verify_gi_numbers.pl'], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/l/LAMMPS/LAMMPS-28Jun14-intel-2015b.eb b/l/LAMMPS/LAMMPS-28Jun14-intel-2015b.eb deleted file mode 100644 index 83ada18e..00000000 --- a/l/LAMMPS/LAMMPS-28Jun14-intel-2015b.eb +++ /dev/null @@ -1,35 +0,0 @@ -name = 'LAMMPS' -version = '28Jun14' - -homepage = 'http://lammps.sandia.gov' -description = """LAMMPS is a classical molecular dynamics code, -and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. -Has potentials for solid-state materials (metals, semiconductors) and soft -matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. -It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, -meso, or continuum scale. -""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -# Please rename downloaded package lammps-stable.tar.gz to correct format reflecting version, like -# lammps-28jun14.tar.gz (lowercase!) and move to the Easybuils sources -# direcory. -source_urls = [ - # Use manually downloaded sources -] - -sources = [SOURCELOWER_TAR_GZ] - -patches = [('LAMMPS-Makefile.mkl.patch', 0)] - -prebuildopts = "cd src && " - -skipsteps = ['configure', 'install'] - -sanity_check_paths = { - 'files': ['bin/lmp_mkl'], - 'dirs': [''], -} - -moduleclass = 'chem' diff --git a/l/LLVM/LLVM-3.7.1-foss-2015g.eb b/l/LLVM/LLVM-3.7.1-foss-2015g.eb deleted file mode 100644 index f8185817..00000000 --- a/l/LLVM/LLVM-3.7.1-foss-2015g.eb +++ /dev/null @@ -1,35 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'LLVM' -version = '3.7.1' - -homepage = "http://llvm.org/" -description = """The LLVM Core libraries provide a modern source- and target-independent - optimizer, along with code generation support for many popular CPUs - (as well as some less common ones!) These libraries are built around a well - specified code representation known as the LLVM intermediate representation - ("LLVM IR"). The LLVM Core libraries are well documented, and it is - particularly easy to invent your own language (or port an existing compiler) - to use LLVM as an optimizer and code generator.""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'cstd': 'gnu++11'} - -source_urls = ["http://llvm.org/releases/%(version)s"] -sources = ["llvm-%(version)s.src.tar.xz"] - -builddependencies = [ - ('CMake', '3.3.1'), - ('Python', '2.7.9'), -] - -configopts = '-DBUILD_SHARED_LIBS=ON -DCMAKE_EXE_LINKER_FLAGS="$LDFLAGS" ' - -sanity_check_paths = { - 'files': ['bin/llvm-ar'], - 'dirs': ['include/llvm', 'include/llvm-c'], -} - -separate_build_dir = True - -moduleclass = 'compiler' diff --git a/l/LSMS/LSMS-3_rev237-foss-2015g.eb b/l/LSMS/LSMS-3_rev237-foss-2015g.eb deleted file mode 100644 index efb8b12f..00000000 --- a/l/LSMS/LSMS-3_rev237-foss-2015g.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = 'MakeCp' - -name = 'LSMS' -version = '3_rev237' - -homepage = 'https://asc.llnl.gov/CORAL-benchmarks/#lsms' -description = "LSMS benchmark, part of CORAL suite" - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = ['https://asc.llnl.gov/CORAL-benchmarks/Science/'] -sources = ['%(name)s_%(version)s.tar.bz2'] - -checksums = ['8c864c9223b93488663815557e61cd0b'] - -patches = ['LSMS-Makefiles.patch'] - -#files_to_copy = ['bin/lsms', 'bin/wl-lsms'] -files_to_copy = ['bin'] - -buildopts = '-j 1' - -dependencies = [ - ('HDF5', '1.8.16'), -] - -sanity_check_paths = { - 'files': ['bin/lsms', 'bin/wl-lsms'], - 'dirs': [], -} - -moduleclass = 'tools' diff --git a/l/LSMS/LSMS-3_rev237-foss-2016a.eb b/l/LSMS/LSMS-3_rev237-foss-2016a.eb deleted file mode 100644 index 6ad5dcad..00000000 --- a/l/LSMS/LSMS-3_rev237-foss-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'MakeCp' - -name = 'LSMS' -version = '3_rev237' - -homepage = 'https://asc.llnl.gov/CORAL-benchmarks/#lsms' -description = "LSMS benchmark, part of CORAL suite" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://asc.llnl.gov/CORAL-benchmarks/Science/'] -sources = ['%(name)s_%(version)s.tar.bz2'] - -checksums = ['8c864c9223b93488663815557e61cd0b'] - -patches = ['LSMS-Makefiles.patch'] - -files_to_copy = ['bin'] - -buildopts = '-j 1' - -dependencies = [ - ('HDF5', '1.8.16'), -] - -sanity_check_paths = { - 'files': ['bin/lsms', 'bin/wl-lsms'], - 'dirs': [], -} - -moduleclass = 'tools' diff --git a/l/LibTIFF/LibTIFF-4.0.3-intel-2015a.eb b/l/LibTIFF/LibTIFF-4.0.3-intel-2015a.eb deleted file mode 100644 index 5b2c252b..00000000 --- a/l/LibTIFF/LibTIFF-4.0.3-intel-2015a.eb +++ /dev/null @@ -1,30 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -## -easyblock = 'ConfigureMake' - -name = 'LibTIFF' -version = '4.0.3' - -homepage = 'http://www.remotesensing.org/libtiff/' -description = "tiff: Library and tools for reading and writing TIFF data files" - -source_urls = ['ftp://ftp.remotesensing.org/pub/libtiff/'] -sources = ['tiff-%(version)s.tar.gz'] - -toolchain = {'name': 'intel', 'version': '2015a'} - -sanity_check_paths = { - 'files': ['bin/tiffinfo'], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/l/LibTIFF/LibTIFF-4.0.3-intel-2015b.eb b/l/LibTIFF/LibTIFF-4.0.3-intel-2015b.eb deleted file mode 100644 index d18fddfb..00000000 --- a/l/LibTIFF/LibTIFF-4.0.3-intel-2015b.eb +++ /dev/null @@ -1,30 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -## -easyblock = 'ConfigureMake' - -name = 'LibTIFF' -version = '4.0.3' - -homepage = 'http://www.remotesensing.org/libtiff/' -description = "tiff: Library and tools for reading and writing TIFF data files" - -source_urls = ['ftp://ftp.remotesensing.org/pub/libtiff/'] -sources = ['tiff-%(version)s.tar.gz'] - -toolchain = {'name': 'intel', 'version': '2015b'} - -sanity_check_paths = { - 'files': ['bin/tiffinfo'], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/l/Loki/Loki-0.1.7-foss-2016a.eb b/l/Loki/Loki-0.1.7-foss-2016a.eb deleted file mode 100644 index 10946056..00000000 --- a/l/Loki/Loki-0.1.7-foss-2016a.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Loki' -version = '0.1.7' - -homepage = 'http://loki-lib.sourceforge.net/' -description = """ Loki is a C++ library of designs, containing flexible implementations of common design patterns and - idioms. """ - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [ - 'https://sourceforge.net/projects/loki-lib/files/Loki/Loki %(version)s/'] -sources = [SOURCELOWER_TAR_GZ] - -skipsteps = ['configure'] - -installopts = "prefix=%(installdir)s" - -sanity_check_paths = { - 'files': [ - 'lib/libloki.a', - 'lib/libloki.%s' % - SHLIB_EXT, - 'lib/libloki.%s.%%(version)s' % - SHLIB_EXT], - 'dirs': ['include/loki'], -} - -moduleclass = 'lib' diff --git a/l/Loki/Loki-0.1.7-foss-2016b.eb b/l/Loki/Loki-0.1.7-foss-2016b.eb deleted file mode 100644 index 3f83f95b..00000000 --- a/l/Loki/Loki-0.1.7-foss-2016b.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Loki' -version = '0.1.7' - -homepage = 'http://loki-lib.sourceforge.net/' -description = """ Loki is a C++ library of designs, containing flexible implementations of common design patterns and - idioms. """ - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = [ - 'https://sourceforge.net/projects/loki-lib/files/Loki/Loki %(version)s/'] -sources = [SOURCELOWER_TAR_GZ] - -skipsteps = ['configure'] - -installopts = "prefix=%(installdir)s" - -sanity_check_paths = { - 'files': [ - 'lib/libloki.a', - 'lib/libloki.%s' % - SHLIB_EXT, - 'lib/libloki.%s.%%(version)s' % - SHLIB_EXT], - 'dirs': ['include/loki'], -} - -moduleclass = 'lib' diff --git a/l/Loki/Loki-0.1.7-intel-2016a.eb b/l/Loki/Loki-0.1.7-intel-2016a.eb deleted file mode 100644 index fcf69b53..00000000 --- a/l/Loki/Loki-0.1.7-intel-2016a.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Loki' -version = '0.1.7' - -homepage = 'http://loki-lib.sourceforge.net/' -description = """ Loki is a C++ library of designs, containing flexible implementations of common design patterns and - idioms. """ - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = [ - 'https://sourceforge.net/projects/loki-lib/files/Loki/Loki %(version)s/'] -sources = [SOURCELOWER_TAR_GZ] - -skipsteps = ['configure'] - -installopts = "prefix=%(installdir)s" - -sanity_check_paths = { - 'files': [ - 'lib/libloki.a', - 'lib/libloki.%s' % - SHLIB_EXT, - 'lib/libloki.%s.%%(version)s' % - SHLIB_EXT], - 'dirs': ['include/loki'], -} - -moduleclass = 'lib' diff --git a/l/Loki/Loki-0.1.7-intel-2016b.eb b/l/Loki/Loki-0.1.7-intel-2016b.eb deleted file mode 100644 index 8269fecd..00000000 --- a/l/Loki/Loki-0.1.7-intel-2016b.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Loki' -version = '0.1.7' - -homepage = 'http://loki-lib.sourceforge.net/' -description = """ Loki is a C++ library of designs, containing flexible implementations of common design patterns and - idioms. """ - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = [ - 'https://sourceforge.net/projects/loki-lib/files/Loki/Loki %(version)s/'] -sources = [SOURCELOWER_TAR_GZ] - -skipsteps = ['configure'] - -installopts = "prefix=%(installdir)s" - -sanity_check_paths = { - 'files': [ - 'lib/libloki.a', - 'lib/libloki.%s' % - SHLIB_EXT, - 'lib/libloki.%s.%%(version)s' % - SHLIB_EXT], - 'dirs': ['include/loki'], -} - -moduleclass = 'lib' diff --git a/l/libGLU/libGLU-9.0.0-foss-2015g.eb b/l/libGLU/libGLU-9.0.0-foss-2015g.eb deleted file mode 100644 index 9544cc58..00000000 --- a/l/libGLU/libGLU-9.0.0-foss-2015g.eb +++ /dev/null @@ -1,24 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libGLU' -version = '9.0.0' - -homepage = 'ftp://ftp.freedesktop.org/pub/mesa/glu/' -description = """The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. """ - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'pic': True} - -source_urls = ['ftp://ftp.freedesktop.org/pub/mesa/glu/'] -sources = ['glu-%(version)s.tar.bz2'] - -dependencies = [ - ('Mesa', '11.0.8', '-Python-2.7.9'), -] - -sanity_check_paths = { - 'files': ['lib/libGLU.so.1'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libICE/libICE-1.0.9-foss-2016a.eb b/l/libICE/libICE-1.0.9-foss-2016a.eb deleted file mode 100644 index 8ac3ccaa..00000000 --- a/l/libICE/libICE-1.0.9-foss-2016a.eb +++ /dev/null @@ -1,35 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libICE' -version = '1.0.9' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X Inter-Client Exchange library for freedesktop.org""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -dependencies = [ - ('xtrans', '1.3.5'), -] - -builddependencies = [ - ('xproto', '7.0.28'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/ICE/ICE%s.h' % - x for x in [ - '', - 'conn', - 'lib', - 'msg', - 'proto', - 'util']], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libICE/libICE-1.0.9-intel-2016a.eb b/l/libICE/libICE-1.0.9-intel-2016a.eb deleted file mode 100644 index 5b20b367..00000000 --- a/l/libICE/libICE-1.0.9-intel-2016a.eb +++ /dev/null @@ -1,35 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libICE' -version = '1.0.9' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X Inter-Client Exchange library for freedesktop.org""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -dependencies = [ - ('xtrans', '1.3.5'), -] - -builddependencies = [ - ('xproto', '7.0.28'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/ICE/ICE%s.h' % - x for x in [ - '', - 'conn', - 'lib', - 'msg', - 'proto', - 'util']], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libMesh/libMesh-0.9.5-intel-2016.01.eb b/l/libMesh/libMesh-0.9.5-intel-2016.01.eb deleted file mode 100644 index 2f156ad2..00000000 --- a/l/libMesh/libMesh-0.9.5-intel-2016.01.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libMesh' -version = '0.9.5' - -homepage = 'http://libmesh.github.io/' -description = """The libMesh library provides a framework for the numerical simulation of partial differential equations - using arbitrary unstructured discretizations on serial and parallel platforms. A major goal of the library is to - provide support for adaptive mesh refinement (AMR) computations in parallel while allowing a research scientist - to focus on the physics they are modeling.""" - -toolchain = {'name': 'intel', 'version': '2016.01'} - -source_urls = [ - 'https://github.com/libMesh/libmesh/releases/download/v%(version)s/', -] - -sources = [SOURCELOWER_TAR_GZ] - -configopts = "CC=mpiicc CXX=mpiicpc" - -#builddependencies = [('PETSc', '3.6.1', '-Python-2.7.9'),] - -sanity_check_paths = { - 'files': ['bin/meshtool-opt'], - 'dirs': ['bin'], -} - -moduleclass = 'lib' diff --git a/l/libSM/libSM-1.2.2-foss-2016a.eb b/l/libSM/libSM-1.2.2-foss-2016a.eb deleted file mode 100644 index 2b248a5a..00000000 --- a/l/libSM/libSM-1.2.2-foss-2016a.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libSM' -version = '1.2.2' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X11 Session Management library, which allows for applications to both manage sessions, - and make use of session managers to save and restore their state for later use.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -dependencies = [ - ('libICE', '1.0.9'), -] -builddependencies = [ - ('xproto', '7.0.28'), - ('xtrans', '1.3.5'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/SM/%s' % - x for x in [ - 'SM.h', - 'SMlib.h', - 'SMproto.h']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/l/libSM/libSM-1.2.2-intel-2016a.eb b/l/libSM/libSM-1.2.2-intel-2016a.eb deleted file mode 100644 index 7f9284c6..00000000 --- a/l/libSM/libSM-1.2.2-intel-2016a.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libSM' -version = '1.2.2' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X11 Session Management library, which allows for applications to both manage sessions, - and make use of session managers to save and restore their state for later use.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -dependencies = [ - ('libICE', '1.0.9'), -] -builddependencies = [ - ('xproto', '7.0.28'), - ('xtrans', '1.3.5'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/SM/%s' % - x for x in [ - 'SM.h', - 'SMlib.h', - 'SMproto.h']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/l/libX11/libX11-1.6.2-intel-2015b-Python-2.7.9.eb b/l/libX11/libX11-1.6.2-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index 42bbf410..00000000 --- a/l/libX11/libX11-1.6.2-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,48 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libX11' -version = '1.6.2' -versionsuffix = '-Python-2.7.9' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X11 client-side library""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('xextproto', '7.3.0'), - ('xcb-proto', '1.11', versionsuffix), - ('inputproto', '2.3'), - ('xproto', '7.0.26'), - ('kbproto', '1.0.6'), -] - -dependencies = [ - ('libxcb', '1.11', versionsuffix), - ('xtrans', '1.3.5'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/%s' % - x for x in [ - 'cursorfont.h', - 'ImUtil.h', - 'Xcms.h', - 'XKBlib.h', - 'XlibConf.h', - 'Xlib.h', - 'Xlibint.h', - 'Xlib-xcb.h', - 'Xlocale.h', - 'Xregion.h', - 'Xresource.h', - 'Xutil.h', - ]], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libX11/libX11-1.6.3-foss-2016a.eb b/l/libX11/libX11-1.6.3-foss-2016a.eb deleted file mode 100644 index 8290462c..00000000 --- a/l/libX11/libX11-1.6.3-foss-2016a.eb +++ /dev/null @@ -1,48 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libX11' -version = '1.6.3' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X11 client-side library""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('xextproto', '7.3.0'), - ('xcb-proto', '1.11', '', True), - ('inputproto', '2.3.1'), - ('xproto', '7.0.28'), - ('libpthread-stubs', '0.3'), - ('kbproto', '1.0.7'), - ('xtrans', '1.3.5'), -] - -dependencies = [ - ('libxcb', '1.11.1'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/%s' % - x for x in [ - 'cursorfont.h', - 'ImUtil.h', - 'Xcms.h', - 'XKBlib.h', - 'XlibConf.h', - 'Xlib.h', - 'Xlibint.h', - 'Xlib-xcb.h', - 'Xlocale.h', - 'Xregion.h', - 'Xresource.h', - 'Xutil.h', - ]], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libX11/libX11-1.6.3-intel-2015b-Python-2.7.9.eb b/l/libX11/libX11-1.6.3-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index 37c24b58..00000000 --- a/l/libX11/libX11-1.6.3-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,48 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libX11' -version = '1.6.3' -versionsuffix = '-Python-2.7.9' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X11 client-side library""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('xextproto', '7.3.0'), - ('xcb-proto', '1.11', versionsuffix), - ('inputproto', '2.3.1'), - ('xproto', '7.0.26'), - ('kbproto', '1.0.6'), -] - -dependencies = [ - ('libxcb', '1.11', versionsuffix), - ('xtrans', '1.3.5'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/%s' % - x for x in [ - 'cursorfont.h', - 'ImUtil.h', - 'Xcms.h', - 'XKBlib.h', - 'XlibConf.h', - 'Xlib.h', - 'Xlibint.h', - 'Xlib-xcb.h', - 'Xlocale.h', - 'Xregion.h', - 'Xresource.h', - 'Xutil.h', - ]], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libX11/libX11-1.6.3-intel-2016a.eb b/l/libX11/libX11-1.6.3-intel-2016a.eb deleted file mode 100644 index ca9c8ae6..00000000 --- a/l/libX11/libX11-1.6.3-intel-2016a.eb +++ /dev/null @@ -1,48 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libX11' -version = '1.6.3' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X11 client-side library""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('xextproto', '7.3.0'), - ('xcb-proto', '1.11', '', True), - ('inputproto', '2.3.1'), - ('xproto', '7.0.28'), - ('libpthread-stubs', '0.3'), - ('kbproto', '1.0.7'), - ('xtrans', '1.3.5'), -] - -dependencies = [ - ('libxcb', '1.11.1'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/%s' % - x for x in [ - 'cursorfont.h', - 'ImUtil.h', - 'Xcms.h', - 'XKBlib.h', - 'XlibConf.h', - 'Xlib.h', - 'Xlibint.h', - 'Xlib-xcb.h', - 'Xlocale.h', - 'Xregion.h', - 'Xresource.h', - 'Xutil.h', - ]], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXau/libXau-1.0.8-foss-2016a.eb b/l/libXau/libXau-1.0.8-foss-2016a.eb deleted file mode 100644 index 9f496971..00000000 --- a/l/libXau/libXau-1.0.8-foss-2016a.eb +++ /dev/null @@ -1,26 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXau' -version = '1.0.8' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """The libXau package contains a library implementing the X11 Authorization Protocol. -This is useful for restricting client access to the display.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('pkg-config', '0.29'), - ('xproto', '7.0.28'), -] - -sanity_check_paths = { - 'files': ['lib/libXau.a', 'lib/libXau.%s' % SHLIB_EXT], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXau/libXau-1.0.8-intel-2016a.eb b/l/libXau/libXau-1.0.8-intel-2016a.eb deleted file mode 100644 index 8003dc09..00000000 --- a/l/libXau/libXau-1.0.8-intel-2016a.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXau' -version = '1.0.8' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """The libXau package contains a library implementing the X11 Authorization Protocol. -This is useful for restricting client access to the display.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('xproto', '7.0.28'), -] - -sanity_check_paths = { - 'files': ['lib/libXau.a', 'lib/libXau.%s' % SHLIB_EXT], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXcursor/libXcursor-1.1.14-foss-2016a.eb b/l/libXcursor/libXcursor-1.1.14-foss-2016a.eb deleted file mode 100644 index 3bfa19a9..00000000 --- a/l/libXcursor/libXcursor-1.1.14-foss-2016a.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXcursor' -version = '1.1.14' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X Cursor management library""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('fixesproto', '5.0'), -] - -dependencies = [ - ('libX11', '1.6.3'), - ('libXfixes', '5.0.1'), - ('libXrender', '0.9.9'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/Xcursor/Xcursor.h', - 'lib/libXcursor.%s' % - SHLIB_EXT, - 'lib/libXcursor.a'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXcursor/libXcursor-1.1.14-intel-2016a.eb b/l/libXcursor/libXcursor-1.1.14-intel-2016a.eb deleted file mode 100644 index b33519b0..00000000 --- a/l/libXcursor/libXcursor-1.1.14-intel-2016a.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXcursor' -version = '1.1.14' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X Cursor management library""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('fixesproto', '5.0'), -] - -dependencies = [ - ('libX11', '1.6.3'), - ('libXfixes', '5.0.1'), - ('libXrender', '0.9.9'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/Xcursor/Xcursor.h', - 'lib/libXcursor.%s' % - SHLIB_EXT, - 'lib/libXcursor.a'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXdamage/libXdamage-1.1.4-foss-2015g-Python-2.7.9.eb b/l/libXdamage/libXdamage-1.1.4-foss-2015g-Python-2.7.9.eb deleted file mode 100644 index 8772916d..00000000 --- a/l/libXdamage/libXdamage-1.1.4-foss-2015g-Python-2.7.9.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXdamage' -version = '1.1.4' -versionsuffix = '-Python-2.7.9' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X Damage extension library""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -dependencies = [ - ('libX11', '1.6.2', versionsuffix), - ('libxcb', '1.11', versionsuffix), - ('libXau', '1.0.8'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/extensions/Xdamage.h', - 'lib/libXdamage.so', - 'lib/libXdamage.a'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXdamage/libXdamage-1.1.4-foss-2016a.eb b/l/libXdamage/libXdamage-1.1.4-foss-2016a.eb deleted file mode 100644 index 928a5cb2..00000000 --- a/l/libXdamage/libXdamage-1.1.4-foss-2016a.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXdamage' -version = '1.1.4' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X Damage extension library""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -dependencies = [ - ('libX11', '1.6.3'), - ('libxcb', '1.11.1'), - ('libXau', '1.0.8'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/extensions/Xdamage.h', - 'lib/libXdamage.%s' % - SHLIB_EXT, - 'lib/libXdamage.a'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXdamage/libXdamage-1.1.4-intel-2016a.eb b/l/libXdamage/libXdamage-1.1.4-intel-2016a.eb deleted file mode 100644 index 0d512c5f..00000000 --- a/l/libXdamage/libXdamage-1.1.4-intel-2016a.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXdamage' -version = '1.1.4' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X Damage extension library""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -dependencies = [ - ('libX11', '1.6.3'), - ('libxcb', '1.11.1'), - ('libXau', '1.0.8'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/extensions/Xdamage.h', - 'lib/libXdamage.%s' % - SHLIB_EXT, - 'lib/libXdamage.a'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXdmcp/libXdmcp-1.1.2-foss-2016a.eb b/l/libXdmcp/libXdmcp-1.1.2-foss-2016a.eb deleted file mode 100644 index 09bc32a4..00000000 --- a/l/libXdmcp/libXdmcp-1.1.2-foss-2016a.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXdmcp' -version = '1.1.2' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """The libXdmcp package contains a library implementing the X Display Manager Control Protocol. This is -useful for allowing clients to interact with the X Display Manager. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('pkg-config', '0.29'), - ('xproto', '7.0.28'), -] - -sanity_check_paths = { - 'files': ['lib/%(name)s.a', 'lib/%%(name)s.%s' % SHLIB_EXT], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXdmcp/libXdmcp-1.1.2-intel-2016a.eb b/l/libXdmcp/libXdmcp-1.1.2-intel-2016a.eb deleted file mode 100644 index 6ec7ecf4..00000000 --- a/l/libXdmcp/libXdmcp-1.1.2-intel-2016a.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXdmcp' -version = '1.1.2' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """The libXdmcp package contains a library implementing the X Display Manager Control Protocol. This is -useful for allowing clients to interact with the X Display Manager. -""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('xproto', '7.0.28'), -] -sanity_check_paths = { - 'files': ['lib/%(name)s.a', 'lib/%%(name)s.%s' % SHLIB_EXT], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXext/libXext-1.3.3-foss-2015g-Python-2.7.9.eb b/l/libXext/libXext-1.3.3-foss-2015g-Python-2.7.9.eb deleted file mode 100644 index 317ef0c0..00000000 --- a/l/libXext/libXext-1.3.3-foss-2015g-Python-2.7.9.eb +++ /dev/null @@ -1,50 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXext' -version = '1.3.3' -versionsuffix = '-Python-2.7.9' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """Common X Extensions library""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] - -builddependencies = [ - ('xproto', '7.0.26'), - ('xextproto', '7.3.0'), -] - -dependencies = [ - ('libX11', '1.6.2', versionsuffix), - ('libXdmcp', '1.1.2'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/extensions/%s' % - x for x in [ - 'dpms.h', - 'extutil.h', - 'MITMisc.h', - 'multibuf.h', - 'security.h', - 'shape.h', - 'sync.h', - 'Xag.h', - 'Xcup.h', - 'Xdbe.h', - 'XEVI.h', - 'Xext.h', - 'Xge.h', - 'XLbx.h', - 'XShm.h', - 'xtestext1.h', - ]], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXext/libXext-1.3.3-foss-2016a.eb b/l/libXext/libXext-1.3.3-foss-2016a.eb deleted file mode 100644 index 646fe3f5..00000000 --- a/l/libXext/libXext-1.3.3-foss-2016a.eb +++ /dev/null @@ -1,49 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXext' -version = '1.3.3' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """Common X Extensions library""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('xproto', '7.0.28'), - ('xextproto', '7.3.0'), - ('libpthread-stubs', '0.3'), -] - -dependencies = [ - ('libX11', '1.6.3'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/extensions/%s' % - x for x in [ - 'dpms.h', - 'extutil.h', - 'MITMisc.h', - 'multibuf.h', - 'security.h', - 'shape.h', - 'sync.h', - 'Xag.h', - 'Xcup.h', - 'Xdbe.h', - 'XEVI.h', - 'Xext.h', - 'Xge.h', - 'XLbx.h', - 'XShm.h', - 'xtestext1.h', - ]], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXext/libXext-1.3.3-intel-2016a.eb b/l/libXext/libXext-1.3.3-intel-2016a.eb deleted file mode 100644 index aa87e5e4..00000000 --- a/l/libXext/libXext-1.3.3-intel-2016a.eb +++ /dev/null @@ -1,49 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXext' -version = '1.3.3' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """Common X Extensions library""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('xproto', '7.0.28'), - ('xextproto', '7.3.0'), - ('libpthread-stubs', '0.3'), -] - -dependencies = [ - ('libX11', '1.6.3'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/extensions/%s' % - x for x in [ - 'dpms.h', - 'extutil.h', - 'MITMisc.h', - 'multibuf.h', - 'security.h', - 'shape.h', - 'sync.h', - 'Xag.h', - 'Xcup.h', - 'Xdbe.h', - 'XEVI.h', - 'Xext.h', - 'Xge.h', - 'XLbx.h', - 'XShm.h', - 'xtestext1.h', - ]], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXfixes/libXfixes-5.0.1-foss-2015g.eb b/l/libXfixes/libXfixes-5.0.1-foss-2015g.eb deleted file mode 100644 index 0948ec2d..00000000 --- a/l/libXfixes/libXfixes-5.0.1-foss-2015g.eb +++ /dev/null @@ -1,28 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXfixes' -version = '5.0.1' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X Fixes extension library""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -dependencies = [ - ('fixesproto', '5.0'), - ('xextproto', '7.3.0'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/extensions/Xfixes.h', - 'lib/libXfixes.a', - 'lib/libXfixes.%s' % - SHLIB_EXT], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXfixes/libXfixes-5.0.1-foss-2016a.eb b/l/libXfixes/libXfixes-5.0.1-foss-2016a.eb deleted file mode 100644 index 6f3bcdc4..00000000 --- a/l/libXfixes/libXfixes-5.0.1-foss-2016a.eb +++ /dev/null @@ -1,28 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXfixes' -version = '5.0.1' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X Fixes extension library""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('fixesproto', '5.0'), - ('xextproto', '7.3.0'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/extensions/Xfixes.h', - 'lib/libXfixes.a', - 'lib/libXfixes.%s' % - SHLIB_EXT], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXfixes/libXfixes-5.0.1-intel-2016a.eb b/l/libXfixes/libXfixes-5.0.1-intel-2016a.eb deleted file mode 100644 index 8a4d3776..00000000 --- a/l/libXfixes/libXfixes-5.0.1-intel-2016a.eb +++ /dev/null @@ -1,28 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXfixes' -version = '5.0.1' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X Fixes extension library""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('fixesproto', '5.0'), - ('xextproto', '7.3.0'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/extensions/Xfixes.h', - 'lib/libXfixes.a', - 'lib/libXfixes.%s' % - SHLIB_EXT], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXfont/libXfont-1.5.1-foss-2015g-Python-2.7.9.eb b/l/libXfont/libXfont-1.5.1-foss-2015g-Python-2.7.9.eb deleted file mode 100644 index 914f7dfe..00000000 --- a/l/libXfont/libXfont-1.5.1-foss-2015g-Python-2.7.9.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXfont' -version = '1.5.1' -versionsuffix = '-Python-2.7.9' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X font libary""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('fontsproto', '2.1.3'), - ('xproto', '7.0.26'), - ('xtrans', '1.3.5'), - ('xorg-macros', '1.17'), - ('libfontenc', '1.1.3'), -] -dependencies = [ - ('libX11', '1.6.2', versionsuffix), - ('freetype', '2.5.3'), -] - -sanity_check_paths = { - 'files': ['lib/libXfont.so', 'lib/libXfont.a'], - 'dirs': ['include/X11/fonts'], -} - -moduleclass = 'vis' diff --git a/l/libXft/libXft-2.3.2-foss-2016a.eb b/l/libXft/libXft-2.3.2-foss-2016a.eb deleted file mode 100644 index 1a968a5a..00000000 --- a/l/libXft/libXft-2.3.2-foss-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXft' -version = '2.3.2' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X11 client-side library""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('kbproto', '1.0.7'), - ('renderproto', '0.11'), -] - -dependencies = [ - ('libX11', '1.6.3'), - ('libXrender', '0.9.9'), - ('freetype', '2.6.2'), - ('fontconfig', '2.11.94'), -] - -sanity_check_paths = { - 'files': ['lib/libXft.a'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXft/libXft-2.3.2-intel-2016a-fontconfig-2.11.95.eb b/l/libXft/libXft-2.3.2-intel-2016a-fontconfig-2.11.95.eb deleted file mode 100644 index 3c4a3783..00000000 --- a/l/libXft/libXft-2.3.2-intel-2016a-fontconfig-2.11.95.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXft' -version = '2.3.2' -versionsuffix = '-fontconfig-2.11.95' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X11 client-side library""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('kbproto', '1.0.7'), - ('renderproto', '0.11'), -] - -dependencies = [ - ('libX11', '1.6.3'), - ('libXrender', '0.9.9'), - ('freetype', '2.6.3'), - ('fontconfig', '2.11.95'), -] - -sanity_check_paths = { - 'files': ['lib/libXft.a'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXft/libXft-2.3.2-intel-2016a.eb b/l/libXft/libXft-2.3.2-intel-2016a.eb deleted file mode 100644 index 17ddfd09..00000000 --- a/l/libXft/libXft-2.3.2-intel-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXft' -version = '2.3.2' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X11 client-side library""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('kbproto', '1.0.7'), - ('renderproto', '0.11'), -] - -dependencies = [ - ('libX11', '1.6.3'), - ('libXrender', '0.9.9'), - ('freetype', '2.6.2'), - ('fontconfig', '2.11.94'), -] - -sanity_check_paths = { - 'files': ['lib/libXft.a'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXi/libXi-1.7.6-foss-2016a.eb b/l/libXi/libXi-1.7.6-foss-2016a.eb deleted file mode 100644 index d5fe7e6d..00000000 --- a/l/libXi/libXi-1.7.6-foss-2016a.eb +++ /dev/null @@ -1,36 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXi' -version = '1.7.6' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """LibXi provides an X Window System client interface to the XINPUT extension to the X protocol.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('xproto', '7.0.28'), - ('xextproto', '7.3.0'), - ('inputproto', '2.3.1'), - ('xorg-macros', '1.19.0'), -] - -dependencies = [ - ('libXext', '1.3.3'), - ('libXfixes', '5.0.1'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/extensions/XInput.h', - 'include/X11/extensions/XInput2.h', - 'lib/libXi.%s' % - SHLIB_EXT, - 'lib/libXi.a'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXi/libXi-1.7.6-intel-2016a.eb b/l/libXi/libXi-1.7.6-intel-2016a.eb deleted file mode 100644 index cb3db9e8..00000000 --- a/l/libXi/libXi-1.7.6-intel-2016a.eb +++ /dev/null @@ -1,36 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXi' -version = '1.7.6' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """LibXi provides an X Window System client interface to the XINPUT extension to the X protocol.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('xproto', '7.0.28'), - ('xextproto', '7.3.0'), - ('inputproto', '2.3.1'), - ('xorg-macros', '1.19.0'), -] - -dependencies = [ - ('libXext', '1.3.3'), - ('libXfixes', '5.0.1'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/extensions/XInput.h', - 'include/X11/extensions/XInput2.h', - 'lib/libXi.%s' % - SHLIB_EXT, - 'lib/libXi.a'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXinerama/libXinerama-1.1.3-foss-2016a.eb b/l/libXinerama/libXinerama-1.1.3-foss-2016a.eb deleted file mode 100644 index e0a2e3d2..00000000 --- a/l/libXinerama/libXinerama-1.1.3-foss-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXinerama' -version = '1.1.3' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """Xinerama multiple monitor library""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('kbproto', '1.0.7'), - ('xineramaproto', '1.2.1'), - ('xextproto', '7.3.0'), - ('xproto', '7.0.28'), -] - -dependencies = [ - ('libX11', '1.6.3'), - ('libXext', '1.3.3'), -] - -sanity_check_paths = { - 'files': ['lib/libXinerama.a'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXinerama/libXinerama-1.1.3-intel-2016a.eb b/l/libXinerama/libXinerama-1.1.3-intel-2016a.eb deleted file mode 100644 index 59633745..00000000 --- a/l/libXinerama/libXinerama-1.1.3-intel-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXinerama' -version = '1.1.3' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """Xinerama multiple monitor library""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('kbproto', '1.0.7'), - ('xineramaproto', '1.2.1'), - ('xextproto', '7.3.0'), - ('xproto', '7.0.28'), -] - -dependencies = [ - ('libX11', '1.6.3'), - ('libXext', '1.3.3'), -] - -sanity_check_paths = { - 'files': ['lib/libXinerama.a'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXrandr/libXrandr-1.5.0-foss-2016a.eb b/l/libXrandr/libXrandr-1.5.0-foss-2016a.eb deleted file mode 100644 index b6614e79..00000000 --- a/l/libXrandr/libXrandr-1.5.0-foss-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXrandr' -version = '1.5.0' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X Resize, Rotate and Reflection extension library""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('randrproto', '1.5.0'), - ('renderproto', '0.11'), - ('xextproto', '7.3.0'), -] - -dependencies = [ - ('libX11', '1.6.3'), - ('libXext', '1.3.3'), - ('libXrender', '0.9.9'), -] - -sanity_check_paths = { - 'files': ['lib/libXrandr.%s' % SHLIB_EXT, 'lib/libXrandr.a'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXrandr/libXrandr-1.5.0-intel-2016a.eb b/l/libXrandr/libXrandr-1.5.0-intel-2016a.eb deleted file mode 100644 index d7c99042..00000000 --- a/l/libXrandr/libXrandr-1.5.0-intel-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXrandr' -version = '1.5.0' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X Resize, Rotate and Reflection extension library""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('randrproto', '1.5.0'), - ('renderproto', '0.11'), - ('xextproto', '7.3.0'), -] - -dependencies = [ - ('libX11', '1.6.3'), - ('libXext', '1.3.3'), - ('libXrender', '0.9.9'), -] - -sanity_check_paths = { - 'files': ['lib/libXrandr.%s' % SHLIB_EXT, 'lib/libXrandr.a'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXrender/libXrender-0.9.9-foss-2016a.eb b/l/libXrender/libXrender-0.9.9-foss-2016a.eb deleted file mode 100644 index 1e633407..00000000 --- a/l/libXrender/libXrender-0.9.9-foss-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXrender' -version = '0.9.9' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X11 client-side library""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('kbproto', '1.0.7'), - ('renderproto', '0.11'), - ('libpthread-stubs', '0.3'), - ('xorg-macros', '1.19.0'), - ('xproto', '7.0.28') -] - -dependencies = [ - ('libX11', '1.6.3'), -] - -sanity_check_paths = { - 'files': ['lib/libXrender.a'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXrender/libXrender-0.9.9-intel-2016a.eb b/l/libXrender/libXrender-0.9.9-intel-2016a.eb deleted file mode 100644 index fefc99f4..00000000 --- a/l/libXrender/libXrender-0.9.9-intel-2016a.eb +++ /dev/null @@ -1,28 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXrender' -version = '0.9.9' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X11 client-side library""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('kbproto', '1.0.7'), - ('renderproto', '0.11'), -] - -dependencies = [ - ('libX11', '1.6.3'), -] - -sanity_check_paths = { - 'files': ['lib/libXrender.a'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXt/libXt-1.1.4-intel-2015b-libX11-1.6.2.eb b/l/libXt/libXt-1.1.4-intel-2015b-libX11-1.6.2.eb deleted file mode 100644 index bcb60f73..00000000 --- a/l/libXt/libXt-1.1.4-intel-2015b-libX11-1.6.2.eb +++ /dev/null @@ -1,70 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXt' -version = '1.1.4' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """libXt provides the X Toolkit Intrinsics, an abstract widget library upon which other toolkits are - based. Xt is the basis for many toolkits, including the Athena widgets (Xaw), and LessTif (a Motif implementation).""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -libx11ver = '1.6.2' -versionsuffix = '-libX11-%s' % libx11ver -dependencies = [ - ('libSM', '1.2.2'), - ('libICE', '1.0.9'), - ('libX11', libx11ver, '-Python-2.7.9'), -] - -builddependencies = [ - ('xproto', '7.0.26'), - ('kbproto', '1.0.6'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/%s' % - x for x in [ - 'CallbackI.h', - 'CompositeP.h', - 'Constraint.h', - 'Core.h', - 'CreateI.h', - 'HookObjI.h', - 'Intrinsic.h', - 'IntrinsicP.h', - 'ObjectP.h', - 'RectObj.h', - 'ResConfigP.h', - 'SelectionI.h', - 'ShellI.h', - 'StringDefs.h', - 'TranslateI.h', - 'Vendor.h', - 'Xtos.h', - 'Composite.h', - 'ConstrainP.h', - 'ConvertI.h', - 'CoreP.h', - 'EventI.h', - 'InitialI.h', - 'IntrinsicI.h', - 'Object.h', - 'PassivGraI.h', - 'RectObjP.h', - 'ResourceI.h', - 'Shell.h', - 'ShellP.h', - 'ThreadsI.h', - 'VarargsI.h', - 'VendorP.h', - ]], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXt/libXt-1.1.5-foss-2015g.eb b/l/libXt/libXt-1.1.5-foss-2015g.eb deleted file mode 100644 index f85cdc15..00000000 --- a/l/libXt/libXt-1.1.5-foss-2015g.eb +++ /dev/null @@ -1,68 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXt' -version = '1.1.5' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """libXt provides the X Toolkit Intrinsics, an abstract widget library upon which other toolkits are - based. Xt is the basis for many toolkits, including the Athena widgets (Xaw), and LessTif (a Motif implementation).""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -dependencies = [ - ('libSM', '1.2.2'), - ('libICE', '1.0.9'), - ('libX11', '1.6.2', '-Python-2.7.9'), -] - -builddependencies = [ - ('xproto', '7.0.26'), - ('kbproto', '1.0.6'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/%s' % - x for x in [ - 'CallbackI.h', - 'CompositeP.h', - 'Constraint.h', - 'Core.h', - 'CreateI.h', - 'HookObjI.h', - 'Intrinsic.h', - 'IntrinsicP.h', - 'ObjectP.h', - 'RectObj.h', - 'ResConfigP.h', - 'SelectionI.h', - 'ShellI.h', - 'StringDefs.h', - 'TranslateI.h', - 'Vendor.h', - 'Xtos.h', - 'Composite.h', - 'ConstrainP.h', - 'ConvertI.h', - 'CoreP.h', - 'EventI.h', - 'InitialI.h', - 'IntrinsicI.h', - 'Object.h', - 'PassivGraI.h', - 'RectObjP.h', - 'ResourceI.h', - 'Shell.h', - 'ShellP.h', - 'ThreadsI.h', - 'VarargsI.h', - 'VendorP.h', - ]], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXt/libXt-1.1.5-foss-2016a.eb b/l/libXt/libXt-1.1.5-foss-2016a.eb deleted file mode 100644 index 54d19a37..00000000 --- a/l/libXt/libXt-1.1.5-foss-2016a.eb +++ /dev/null @@ -1,68 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXt' -version = '1.1.5' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """libXt provides the X Toolkit Intrinsics, an abstract widget library upon which other toolkits are - based. Xt is the basis for many toolkits, including the Athena widgets (Xaw), and LessTif (a Motif implementation).""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('xproto', '7.0.28'), - ('kbproto', '1.0.7'), -] - -dependencies = [ - ('libSM', '1.2.2'), - ('libICE', '1.0.9'), - ('libX11', '1.6.3'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/%s' % - x for x in [ - 'CallbackI.h', - 'CompositeP.h', - 'Constraint.h', - 'Core.h', - 'CreateI.h', - 'HookObjI.h', - 'Intrinsic.h', - 'IntrinsicP.h', - 'ObjectP.h', - 'RectObj.h', - 'ResConfigP.h', - 'SelectionI.h', - 'ShellI.h', - 'StringDefs.h', - 'TranslateI.h', - 'Vendor.h', - 'Xtos.h', - 'Composite.h', - 'ConstrainP.h', - 'ConvertI.h', - 'CoreP.h', - 'EventI.h', - 'InitialI.h', - 'IntrinsicI.h', - 'Object.h', - 'PassivGraI.h', - 'RectObjP.h', - 'ResourceI.h', - 'Shell.h', - 'ShellP.h', - 'ThreadsI.h', - 'VarargsI.h', - 'VendorP.h', - ]], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libXt/libXt-1.1.5-intel-2016a.eb b/l/libXt/libXt-1.1.5-intel-2016a.eb deleted file mode 100644 index a245a0fb..00000000 --- a/l/libXt/libXt-1.1.5-intel-2016a.eb +++ /dev/null @@ -1,68 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libXt' -version = '1.1.5' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """libXt provides the X Toolkit Intrinsics, an abstract widget library upon which other toolkits are - based. Xt is the basis for many toolkits, including the Athena widgets (Xaw), and LessTif (a Motif implementation).""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('xproto', '7.0.28'), - ('kbproto', '1.0.7'), -] - -dependencies = [ - ('libSM', '1.2.2'), - ('libICE', '1.0.9'), - ('libX11', '1.6.3'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/%s' % - x for x in [ - 'CallbackI.h', - 'CompositeP.h', - 'Constraint.h', - 'Core.h', - 'CreateI.h', - 'HookObjI.h', - 'Intrinsic.h', - 'IntrinsicP.h', - 'ObjectP.h', - 'RectObj.h', - 'ResConfigP.h', - 'SelectionI.h', - 'ShellI.h', - 'StringDefs.h', - 'TranslateI.h', - 'Vendor.h', - 'Xtos.h', - 'Composite.h', - 'ConstrainP.h', - 'ConvertI.h', - 'CoreP.h', - 'EventI.h', - 'InitialI.h', - 'IntrinsicI.h', - 'Object.h', - 'PassivGraI.h', - 'RectObjP.h', - 'ResourceI.h', - 'Shell.h', - 'ShellP.h', - 'ThreadsI.h', - 'VarargsI.h', - 'VendorP.h', - ]], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/l/libctl/libctl-3.2.2-intel-2015a.eb b/l/libctl/libctl-3.2.2-intel-2015a.eb deleted file mode 100644 index e5f034b8..00000000 --- a/l/libctl/libctl-3.2.2-intel-2015a.eb +++ /dev/null @@ -1,21 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libctl' -version = '3.2.2' - -homepage = 'http://ab-initio.mit.edu/libctl' -description = """libctl is a free Guile-based library implementing flexible control files for scientific simulations.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'optarch': True} - -source_urls = ['http://ab-initio.mit.edu/libctl/'] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [('guile', '1.8.8')] - -# fix for guile-config being broken because shebang line contains full -# path to bin/guile -configopts = 'GUILE_CONFIG="$EBROOTGUILE/bin/guile -e main -s $EBROOTGUILE/bin/guile-config"' - -moduleclass = 'chem' diff --git a/l/libdrm/libdrm-2.4.70-foss-2016b.eb b/l/libdrm/libdrm-2.4.70-foss-2016b.eb deleted file mode 100644 index 829c1b55..00000000 --- a/l/libdrm/libdrm-2.4.70-foss-2016b.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libdrm' -version = '2.4.70' - -homepage = 'http://dri.freedesktop.org' -description = """Direct Rendering Manager runtime library.""" - -source_urls = ['http://dri.freedesktop.org/libdrm/'] -sources = [SOURCELOWER_TAR_GZ] - -toolchain = {'name': 'foss', 'version': '2016b'} - -dependencies = [ - ('X11', '20160819'), - ('libpthread-stubs', '0.3'), - ('libpciaccess', '0.13.4'), -] - -sanity_check_paths = { - 'files': [ - 'include/xf86drm.h', - 'include/xf86drmMode.h', - 'lib/libdrm_intel.%s' % - SHLIB_EXT, - 'lib/libdrm_radeon.%s' % - SHLIB_EXT, - 'lib/libdrm.%s' % - SHLIB_EXT, - 'lib/libkms.%s' % - SHLIB_EXT], - 'dirs': [ - 'include/libdrm', - 'include/libkms', - 'lib/pkgconfig'], -} - -moduleclass = 'lib' diff --git a/l/libdrm/libdrm-2.4.70-intel-2016b.eb b/l/libdrm/libdrm-2.4.70-intel-2016b.eb deleted file mode 100644 index 92ae5779..00000000 --- a/l/libdrm/libdrm-2.4.70-intel-2016b.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libdrm' -version = '2.4.70' - -homepage = 'http://dri.freedesktop.org' -description = """Direct Rendering Manager runtime library.""" - -source_urls = ['http://dri.freedesktop.org/libdrm/'] -sources = [SOURCELOWER_TAR_GZ] - -toolchain = {'name': 'intel', 'version': '2016b'} - -dependencies = [ - ('X11', '20160819'), - ('libpthread-stubs', '0.3'), - ('libpciaccess', '0.13.4'), -] - -sanity_check_paths = { - 'files': [ - 'include/xf86drm.h', - 'include/xf86drmMode.h', - 'lib/libdrm_intel.%s' % - SHLIB_EXT, - 'lib/libdrm_radeon.%s' % - SHLIB_EXT, - 'lib/libdrm.%s' % - SHLIB_EXT, - 'lib/libkms.%s' % - SHLIB_EXT], - 'dirs': [ - 'include/libdrm', - 'include/libkms', - 'lib/pkgconfig'], -} - -moduleclass = 'lib' diff --git a/l/libffi/libffi-3.0.13-foss-2015b.eb b/l/libffi/libffi-3.0.13-foss-2015b.eb deleted file mode 100644 index 2540d6e6..00000000 --- a/l/libffi/libffi-3.0.13-foss-2015b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libffi' -version = '3.0.13' - -homepage = 'http://sourceware.org/libffi/' -description = """The libffi library provides a portable, high level programming interface to various calling -conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" - -toolchain = {'name': 'foss', 'version': '2015b'} - -source_urls = [ - 'ftp://sourceware.org/pub/libffi/', - 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', -] -sources = [SOURCELOWER_TAR_GZ] - -patches = ['libffi-%(version)s_include-xmmintrin.patch'] - -sanity_check_paths = { - 'files': [ - ('lib/libffi.%s' % - SHLIB_EXT, - 'lib64/libffi.%s' % - SHLIB_EXT), - ('lib/libffi.a', - 'lib64/libffi.a')], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/l/libffi/libffi-3.0.13-foss-2015g.eb b/l/libffi/libffi-3.0.13-foss-2015g.eb deleted file mode 100644 index 81cadffa..00000000 --- a/l/libffi/libffi-3.0.13-foss-2015g.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libffi' -version = '3.0.13' - -homepage = 'http://sourceware.org/libffi/' -description = """The libffi library provides a portable, high level programming interface to various calling -conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = [ - 'ftp://sourceware.org/pub/libffi/', - 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', -] -sources = [SOURCELOWER_TAR_GZ] - -patches = ['libffi-%(version)s_include-xmmintrin.patch'] - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib'], -} - -moduleclass = 'lib' diff --git a/l/libfontenc/libfontenc-1.1.3-foss-2015g.eb b/l/libfontenc/libfontenc-1.1.3-foss-2015g.eb deleted file mode 100644 index 7c0d5f3f..00000000 --- a/l/libfontenc/libfontenc-1.1.3-foss-2015g.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libfontenc' -version = '1.1.3' - -homepage = 'http://www.freedesktop.org/wiki/Software/xlibs/' -description = """X11 font encoding library""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('xproto', '7.0.26'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/fonts/fontenc.h', - 'lib/libfontenc.%s' % - SHLIB_EXT, - 'lib/libfontenc.a'], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/l/libfontenc/libfontenc-1.1.3-foss-2016a.eb b/l/libfontenc/libfontenc-1.1.3-foss-2016a.eb deleted file mode 100644 index 2c044f20..00000000 --- a/l/libfontenc/libfontenc-1.1.3-foss-2016a.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libfontenc' -version = '1.1.3' - -homepage = 'http://www.freedesktop.org/wiki/Software/xlibs/' -description = """X11 font encoding library""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('xproto', '7.0.28'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/fonts/fontenc.h', - 'lib/libfontenc.%s' % - SHLIB_EXT, - 'lib/libfontenc.a'], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/l/libfontenc/libfontenc-1.1.3-intel-2016a.eb b/l/libfontenc/libfontenc-1.1.3-intel-2016a.eb deleted file mode 100644 index e8676119..00000000 --- a/l/libfontenc/libfontenc-1.1.3-intel-2016a.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libfontenc' -version = '1.1.3' - -homepage = 'http://www.freedesktop.org/wiki/Software/xlibs/' -description = """X11 font encoding library""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [XORG_LIB_SOURCE] - -builddependencies = [ - ('xproto', '7.0.28'), -] - -sanity_check_paths = { - 'files': [ - 'include/X11/fonts/fontenc.h', - 'lib/libfontenc.%s' % - SHLIB_EXT, - 'lib/libfontenc.a'], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/l/libgdiplus/libgdiplus-3.12-intel-2016.01.eb b/l/libgdiplus/libgdiplus-3.12-intel-2016.01.eb deleted file mode 100644 index a98779ec..00000000 --- a/l/libgdiplus/libgdiplus-3.12-intel-2016.01.eb +++ /dev/null @@ -1,27 +0,0 @@ -name = 'libgdiplus' -version = '3.12' - -easyblock = 'ConfigureMake' - -homepage = 'https://github.com/mono/libgdiplus' -description = """An Open Source implementation of the GDI+ API.""" - -toolchain = {'name': 'intel', 'version': '2016.01'} - -sources = ['%(version)s.tar.gz'] -source_urls = ['https://github.com/mono/libgdiplus/archive/'] - -preconfigopts = "./autogen.sh && " - -osdependencies = [('cairo-devel', 'libssl-dev')] - -builddependencies = [('GLib', '2.40.0')] - -sanity_check_paths = { - 'files': ['lib/libgdiplus.%s' % SHLIB_EXT], - 'dirs': [], -} - -maxparallel = 4 - -moduleclass = 'lang' diff --git a/l/libmatheval/libmatheval-1.1.11-foss-2015b.eb b/l/libmatheval/libmatheval-1.1.11-foss-2015b.eb deleted file mode 100644 index bff2a682..00000000 --- a/l/libmatheval/libmatheval-1.1.11-foss-2015b.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libmatheval' -version = '1.1.11' - -homepage = 'http://www.gnu.org/software/libmatheval/' -description = """GNU libmatheval is a library (callable from C and Fortran) to parse - and evaluate symbolic expressions input as text.""" - -toolchain = {'name': 'foss', 'version': '2015b'} -toolchainopts = {'pic': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [GNU_SOURCE] - -dependencies = [ - ('flex', '2.5.39'), - ('Bison', '3.0.4'), - ('byacc', '20150711'), - ('guile', '1.8.8'), -] - -configopts = '--with-pic ' - -# fix for guile-config being broken because shebang line contains full -# path to bin/guile -configopts += 'GUILE_CONFIG="$EBROOTGUILE/bin/guile -e main -s $EBROOTGUILE/bin/guile-config"' - -sanity_check_paths = { - 'files': ['lib/libmatheval.a', 'include/matheval.h'], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/l/libmatheval/libmatheval-1.1.11-intel-2015b.eb b/l/libmatheval/libmatheval-1.1.11-intel-2015b.eb deleted file mode 100644 index 6ceddad7..00000000 --- a/l/libmatheval/libmatheval-1.1.11-intel-2015b.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libmatheval' -version = '1.1.11' - -homepage = 'http://www.gnu.org/software/libmatheval/' -description = """GNU libmatheval is a library (callable from C and Fortran) to parse - and evaluate symbolic expressions input as text.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [GNU_SOURCE] - -dependencies = [ - ('flex', '2.5.39'), - ('Bison', '3.0.4'), - ('byacc', '20150711'), - ('guile', '1.8.8'), -] - -configopts = '--with-pic ' - -# fix for guile-config being broken because shebang line contains full -# path to bin/guile -configopts += 'GUILE_CONFIG="$EBROOTGUILE/bin/guile -e main -s $EBROOTGUILE/bin/guile-config"' - -sanity_check_paths = { - 'files': ['lib/libmatheval.a', 'include/matheval.h'], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/l/libmatheval/libmatheval-1.1.8-foss-2015b.eb b/l/libmatheval/libmatheval-1.1.8-foss-2015b.eb deleted file mode 100644 index f687709c..00000000 --- a/l/libmatheval/libmatheval-1.1.8-foss-2015b.eb +++ /dev/null @@ -1,35 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-08-17_09-22-15 -easyblock = 'ConfigureMake' - -name = 'libmatheval' -version = '1.1.8' - -homepage = 'http://www.gnu.org/software/libmatheval/' -description = """GNU libmatheval is a library (callable from C and Fortran) to parse - and evaluate symbolic expressions input as text.""" - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [GNU_SOURCE] - -toolchain = {'name': 'foss', 'version': '2015b'} -toolchainopts = {'pic': True} - -dependencies = [ - ('flex', '2.5.39'), - ('Bison', '2.7'), - ('byacc', '20120526'), - ('guile', '1.8.8'), -] - -configopts = '--with-pic ' - -# fix for guile-config being broken because shebang line contains full -# path to bin/guile -configopts += 'GUILE_CONFIG="$EBROOTGUILE/bin/guile -e main -s $EBROOTGUILE/bin/guile-config"' - -sanity_check_paths = { - 'files': ['lib/libmatheval.a', 'include/matheval.h'], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/l/libmatheval/libmatheval-1.1.8-foss-2015g.eb b/l/libmatheval/libmatheval-1.1.8-foss-2015g.eb deleted file mode 100644 index 7c00553b..00000000 --- a/l/libmatheval/libmatheval-1.1.8-foss-2015g.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libmatheval' -version = '1.1.8' - -homepage = 'http://www.gnu.org/software/libmatheval/' -description = """GNU libmatheval is a library (callable from C and Fortran) to parse - and evaluate symbolic expressions input as text.""" - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [GNU_SOURCE] - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'pic': True} - -dependencies = [ - ('flex', '2.5.39'), - ('Bison', '2.7'), - ('byacc', '20120526'), - ('guile', '1.8.8'), -] - -configopts = '--with-pic ' - -# fix for guile-config being broken because shebang line contains full -# path to bin/guile -configopts += 'GUILE_CONFIG="$EBROOTGUILE/bin/guile -e main -s $EBROOTGUILE/bin/guile-config"' - -sanity_check_paths = { - 'files': ['lib/libmatheval.a', 'include/matheval.h'], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/l/libmatheval/libmatheval-1.1.8-foss-2016a.eb b/l/libmatheval/libmatheval-1.1.8-foss-2016a.eb deleted file mode 100644 index 48bf5ef1..00000000 --- a/l/libmatheval/libmatheval-1.1.8-foss-2016a.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libmatheval' -version = '1.1.8' - -homepage = 'http://www.gnu.org/software/libmatheval/' -description = """GNU libmatheval is a library (callable from C and Fortran) to parse - and evaluate symbolic expressions input as text.""" - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [GNU_SOURCE] - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'pic': True} - -dependencies = [ - ('flex', '2.5.39'), - ('Bison', '3.0.4'), - ('byacc', '20120526'), - ('guile', '1.8.8'), -] - -configopts = '--with-pic ' - -# fix for guile-config being broken because shebang line contains full -# path to bin/guile -configopts += 'GUILE_CONFIG="$EBROOTGUILE/bin/guile -e main -s $EBROOTGUILE/bin/guile-config"' - -sanity_check_paths = { - 'files': ['lib/libmatheval.a', 'include/matheval.h'], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/l/libmatheval/libmatheval-1.1.8-intel-2015b.eb b/l/libmatheval/libmatheval-1.1.8-intel-2015b.eb deleted file mode 100644 index 9e85a2e1..00000000 --- a/l/libmatheval/libmatheval-1.1.8-intel-2015b.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libmatheval' -version = '1.1.8' - -homepage = 'http://www.gnu.org/software/libmatheval/' -description = """GNU libmatheval is a library (callable from C and Fortran) to parse - and evaluate symbolic expressions input as text.""" - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [GNU_SOURCE] - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True} - -dependencies = [ - ('flex', '2.5.35'), - ('Bison', '2.5'), - ('byacc', '20120526'), - ('guile', '1.8.8'), -] - -configopts = '--with-pic ' - -# fix for guile-config being broken because shebang line contains full -# path to bin/guile -configopts += 'GUILE_CONFIG="$EBROOTGUILE/bin/guile -e main -s $EBROOTGUILE/bin/guile-config"' - -sanity_check_paths = { - 'files': ['lib/libmatheval.a', 'include/matheval.h'], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/l/libpng/libpng-1.6.12-intel-2015b.eb b/l/libpng/libpng-1.6.12-intel-2015b.eb deleted file mode 100644 index 8e747969..00000000 --- a/l/libpng/libpng-1.6.12-intel-2015b.eb +++ /dev/null @@ -1,20 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-06-29_22-19-32 -easyblock = 'ConfigureMake' - -name = 'libpng' -version = '1.6.12' - -homepage = 'http://www.libpng.org/pub/png/libpng.html' -description = "libpng is the official PNG reference library" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [('zlib', '1.2.8')] - -configopts = "--with-pic" - -moduleclass = 'lib' diff --git a/l/libpsortb/libpsortb-1.0-foss-2016a.eb b/l/libpsortb/libpsortb-1.0-foss-2016a.eb deleted file mode 100644 index 49ee1596..00000000 --- a/l/libpsortb/libpsortb-1.0-foss-2016a.eb +++ /dev/null @@ -1,20 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libpsortb' -version = '1.0' - -homepage = "http://psort.org/" -description = """PSORT family of programs for subcellular localization prediction as well as other datasets and - resources relevant to localization prediction.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://www.psort.org/download/'] -sources = [SOURCELOWER_TAR_GZ] - -sanity_check_paths = { - 'files': ['lib64/libhmmer.so', 'lib64/libsvmloc.so'], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/l/libreadline/libreadline-6.2-intel-2015b.eb b/l/libreadline/libreadline-6.2-intel-2015b.eb deleted file mode 100644 index 49826369..00000000 --- a/l/libreadline/libreadline-6.2-intel-2015b.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libreadline' -version = '6.2' - -homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' -description = """The GNU Readline library provides a set of functions for use by applications that - allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. - The Readline library includes additional functions to maintain a list of previously-entered command lines, - to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True} - -sources = ['readline-%(version)s.tar.gz'] -source_urls = ['http://ftp.gnu.org/gnu/readline'] - -dependencies = [('ncurses', '5.9')] - -sanity_check_paths = { - 'files': [ - 'lib/libreadline.a', - 'lib/libhistory.a'] + - [ - 'include/readline/%s' % - x for x in [ - 'chardefs.h', - 'history.h', - 'keymaps.h', - 'readline.h', - 'rlconf.h', - 'rlstdc.h', - 'rltypedefs.h', - 'tilde.h']], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/l/libreadline/libreadline-6.3-foss-2015g.eb b/l/libreadline/libreadline-6.3-foss-2015g.eb deleted file mode 100644 index c930b74b..00000000 --- a/l/libreadline/libreadline-6.3-foss-2015g.eb +++ /dev/null @@ -1,40 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-09-08_14-59-35 -# Built with EasyBuild version 2.1.1 on 2015-06-29_22-22-35 -easyblock = 'ConfigureMake' - -name = 'libreadline' -version = '6.3' - -homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' -description = """The GNU Readline library provides a set of functions for use by applications that - allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. - The Readline library includes additional functions to maintain a list of previously-entered command lines, - to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'pic': True} - -sources = ['readline-%(version)s.tar.gz'] -source_urls = ['http://ftp.gnu.org/gnu/readline'] - -dependencies = [('ncurses', '5.9')] - -sanity_check_paths = { - 'files': [ - 'lib/libreadline.a', - 'lib/libhistory.a'] + - [ - 'include/readline/%s' % - x for x in [ - 'chardefs.h', - 'history.h', - 'keymaps.h', - 'readline.h', - 'rlconf.h', - 'rlstdc.h', - 'rltypedefs.h', - 'tilde.h']], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/l/libsodium/libsodium-1.0.3-intel-2015a.eb b/l/libsodium/libsodium-1.0.3-intel-2015a.eb deleted file mode 100644 index 6a09abe7..00000000 --- a/l/libsodium/libsodium-1.0.3-intel-2015a.eb +++ /dev/null @@ -1,26 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libsodium' -version = '1.0.3' - -homepage = 'http://doc.libsodium.org/' -description = """Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, - password hashing and more.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -source_urls = ['https://download.libsodium.org/libsodium/releases/'] -sources = [SOURCE_TAR_GZ] - -sanity_check_paths = { - 'files': [ - 'include/sodium.h', - 'lib/libsodium.%s' % - SHLIB_EXT, - 'lib/libsodium.a'], - 'dirs': [ - 'include/sodium', - 'lib/pkgconfig'], -} - -moduleclass = 'lib' diff --git a/l/libtool/libtool-2.4.2-foss-2015b.eb b/l/libtool/libtool-2.4.2-foss-2015b.eb deleted file mode 100644 index 8566a8be..00000000 --- a/l/libtool/libtool-2.4.2-foss-2015b.eb +++ /dev/null @@ -1,16 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-08-17_08-12-48 -easyblock = 'ConfigureMake' - -name = 'libtool' -version = '2.4.2' - -homepage = 'http://www.gnu.org/software/libtool' -description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries - behind a consistent, portable interface.""" - -toolchain = {'name': 'foss', 'version': '2015b'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://ftp.gnu.org/gnu/%s' % name.lower()] - -moduleclass = 'lib' diff --git a/l/libtool/libtool-2.4.2-foss-2015g.eb b/l/libtool/libtool-2.4.2-foss-2015g.eb deleted file mode 100644 index f3865909..00000000 --- a/l/libtool/libtool-2.4.2-foss-2015g.eb +++ /dev/null @@ -1,17 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-09-08_14-18-26 -# Built with EasyBuild version 2.1.1 on 2015-08-17_08-12-48 -easyblock = 'ConfigureMake' - -name = 'libtool' -version = '2.4.2' - -homepage = 'http://www.gnu.org/software/libtool' -description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries - behind a consistent, portable interface.""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://ftp.gnu.org/gnu/%s' % name.lower()] - -moduleclass = 'lib' diff --git a/l/libtool/libtool-2.4.2-intel-2015b.eb b/l/libtool/libtool-2.4.2-intel-2015b.eb deleted file mode 100644 index f1eef359..00000000 --- a/l/libtool/libtool-2.4.2-intel-2015b.eb +++ /dev/null @@ -1,16 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-08-17_08-12-48 -easyblock = 'ConfigureMake' - -name = 'libtool' -version = '2.4.2' - -homepage = 'http://www.gnu.org/software/libtool' -description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries - behind a consistent, portable interface.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://ftp.gnu.org/gnu/%s' % name.lower()] - -moduleclass = 'lib' diff --git a/l/libunistring/libunistring-0.9.3-foss-2015b.eb b/l/libunistring/libunistring-0.9.3-foss-2015b.eb deleted file mode 100644 index d0ed08fb..00000000 --- a/l/libunistring/libunistring-0.9.3-foss-2015b.eb +++ /dev/null @@ -1,41 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libunistring' -version = '0.9.3' - -homepage = 'http://www.gnu.org/software/libunistring/' -description = """This library provides functions for manipulating Unicode strings and for manipulating C strings - according to the Unicode standard.""" - -toolchain = {'name': 'foss', 'version': '2015b'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [GNU_SOURCE] - -patches = ['libunistring_icc_builtin_nan-inf.patch'] - -parallel = 1 - -sanity_check_paths = { - 'files': [ - 'lib/libunistring.a', - 'lib/libunistring.%s' % - SHLIB_EXT] + - [ - 'include/uni%s.h' % - x for x in [ - 'case', - 'conv', - 'ctype', - 'lbrk', - 'name', - 'norm', - 'stdio', - 'str', - 'types', - 'wbrk', - 'width']], - 'dirs': ['include/unistring'], -} - -moduleclass = 'lib' diff --git a/l/libunistring/libunistring-0.9.3-foss-2015g.eb b/l/libunistring/libunistring-0.9.3-foss-2015g.eb deleted file mode 100644 index 5a6362a7..00000000 --- a/l/libunistring/libunistring-0.9.3-foss-2015g.eb +++ /dev/null @@ -1,41 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libunistring' -version = '0.9.3' - -homepage = 'http://www.gnu.org/software/libunistring/' -description = """This library provides functions for manipulating Unicode strings and for manipulating C strings - according to the Unicode standard.""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [GNU_SOURCE] - -patches = ['libunistring_icc_builtin_nan-inf.patch'] - -parallel = 1 - -sanity_check_paths = { - 'files': [ - 'lib/libunistring.a', - 'lib/libunistring.so', - 'include/unistring'] + - [ - 'include/uni%s.h' % - x for x in [ - 'case', - 'conv', - 'ctype', - 'lbrk', - 'name', - 'norm', - 'stdio', - 'str', - 'types', - 'wbrk', - 'width']], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/l/libxc/libxc-2.2.1-intel-2015a.eb b/l/libxc/libxc-2.2.1-intel-2015a.eb deleted file mode 100644 index 13f7f941..00000000 --- a/l/libxc/libxc-2.2.1-intel-2015a.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxc' -version = '2.2.1' - -homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' -description = """Libxc is a library of exchange-correlation functionals for density-functional theory. - The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'opt': True} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] - -configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' - -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -#runtest = 'check' - -sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], - 'dirs': ['include'], -} - -parallel = 1 - -moduleclass = 'chem' diff --git a/l/libxc/libxc-2.2.2-foss-2015b.eb b/l/libxc/libxc-2.2.2-foss-2015b.eb deleted file mode 100644 index b029d795..00000000 --- a/l/libxc/libxc-2.2.2-foss-2015b.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxc' -version = '2.2.2' - -homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' -description = """Libxc is a library of exchange-correlation functionals for density-functional theory. - The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" - -toolchain = {'name': 'foss', 'version': '2015b'} -toolchainopts = {'opt': True} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] - -configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' - -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -#runtest = 'check' - -sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], - 'dirs': ['include'], -} - -parallel = 1 - -moduleclass = 'chem' diff --git a/l/libxc/libxc-2.2.2-intel-2015a.eb b/l/libxc/libxc-2.2.2-intel-2015a.eb deleted file mode 100644 index 7590c866..00000000 --- a/l/libxc/libxc-2.2.2-intel-2015a.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxc' -version = '2.2.2' - -homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' -description = """Libxc is a library of exchange-correlation functionals for density-functional theory. - The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'opt': True} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] - -configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' - -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -#runtest = 'check' - -sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], - 'dirs': ['include'], -} - -parallel = 1 - -moduleclass = 'chem' diff --git a/l/libxc/libxc-2.2.2-intel-2015b.eb b/l/libxc/libxc-2.2.2-intel-2015b.eb deleted file mode 100644 index 96aab1d1..00000000 --- a/l/libxc/libxc-2.2.2-intel-2015b.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxc' -version = '2.2.2' - -homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' -description = """Libxc is a library of exchange-correlation functionals for density-functional theory. - The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'opt': True} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] - -configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' - -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -#runtest = 'check' - -sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], - 'dirs': ['include'], -} - -parallel = 1 - -moduleclass = 'chem' diff --git a/l/libxc/libxc-2.2.3-foss-2016b.eb b/l/libxc/libxc-2.2.3-foss-2016b.eb deleted file mode 100644 index ae5d8d9f..00000000 --- a/l/libxc/libxc-2.2.3-foss-2016b.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxc' -version = '2.2.3' - -homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' -description = """Libxc is a library of exchange-correlation functionals for density-functional theory. - The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] - -configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' - -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -#runtest = 'check' - -sanity_check_paths = { - 'files': [ - 'lib/libxc%s.%s' % - (x, y) for x in [ - '', 'f90'] for y in [ - 'a', SHLIB_EXT]], 'dirs': ['include'], } - -parallel = 1 - -moduleclass = 'chem' diff --git a/l/libxc/libxc-2.2.3-intel-2016a.eb b/l/libxc/libxc-2.2.3-intel-2016a.eb deleted file mode 100644 index e0da7f83..00000000 --- a/l/libxc/libxc-2.2.3-intel-2016a.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxc' -version = '2.2.3' - -homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' -description = """Libxc is a library of exchange-correlation functionals for density-functional theory. - The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] - -configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' - -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -#runtest = 'check' - -sanity_check_paths = { - 'files': [ - 'lib/libxc%s.%s' % - (x, y) for x in [ - '', 'f90'] for y in [ - 'a', SHLIB_EXT]], 'dirs': ['include'], } - -parallel = 1 - -moduleclass = 'chem' diff --git a/l/libxc/libxc-2.2.3-intel-2016b.eb b/l/libxc/libxc-2.2.3-intel-2016b.eb deleted file mode 100644 index abd0ca0d..00000000 --- a/l/libxc/libxc-2.2.3-intel-2016b.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxc' -version = '2.2.3' - -homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' -description = """Libxc is a library of exchange-correlation functionals for density-functional theory. - The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] - -configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' - -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -#runtest = 'check' - -sanity_check_paths = { - 'files': [ - 'lib/libxc%s.%s' % - (x, y) for x in [ - '', 'f90'] for y in [ - 'a', SHLIB_EXT]], 'dirs': ['include'], } - -parallel = 1 - -moduleclass = 'chem' diff --git a/l/libxc/libxc-3.0.0-intel-2016a.eb b/l/libxc/libxc-3.0.0-intel-2016a.eb deleted file mode 100644 index 141e3537..00000000 --- a/l/libxc/libxc-3.0.0-intel-2016a.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxc' -version = '3.0.0' - -homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' -description = """Libxc is a library of exchange-correlation functionals for density-functional theory. - The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] - -configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' - -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -#runtest = 'check' - -sanity_check_paths = { - 'files': [ - 'lib/libxc%s.%s' % - (x, y) for x in [ - '', 'f90'] for y in [ - 'a', SHLIB_EXT]], 'dirs': ['include'], } - -parallel = 1 - -moduleclass = 'chem' diff --git a/l/libxc/libxc-3.0.0-intel-2016b.eb b/l/libxc/libxc-3.0.0-intel-2016b.eb deleted file mode 100644 index 35e8ad68..00000000 --- a/l/libxc/libxc-3.0.0-intel-2016b.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxc' -version = '3.0.0' - -homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' -description = """Libxc is a library of exchange-correlation functionals for density-functional theory. - The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] - -configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' - -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -#runtest = 'check' - -sanity_check_paths = { - 'files': [ - 'lib/libxc%s.%s' % - (x, y) for x in [ - '', 'f90'] for y in [ - 'a', SHLIB_EXT]], 'dirs': ['include'], } - -parallel = 1 - -moduleclass = 'chem' diff --git a/l/libxcb/libxcb-1.11-intel-2015b-Python-2.7.9.eb b/l/libxcb/libxcb-1.11-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index 7c849039..00000000 --- a/l/libxcb/libxcb-1.11-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,57 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxcb' -version = '1.11' - -homepage = 'http://xcb.freedesktop.org/' -description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, -latency hiding, direct access to the protocol, improved threading support, and extensibility.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['http://xcb.freedesktop.org/dist/'] -sources = [SOURCELOWER_TAR_GZ] - -python = 'Python' -pyver = '2.7.9' -versionsuffix = '-%s-%s' % (python, pyver) - -dependencies = [ - (python, pyver), - ('xcb-proto', '1.11', versionsuffix), - ('libXau', '1.0.8'), - ('libpthread-stubs', '0.3'), -] - -sanity_check_paths = { - 'files': [ - 'lib/libxcb%s.a' % - x for x in [ - "", - "-composite", - "-damage", - "-dpms", - "-dri2", - "-glx", - "-randr", - "-record", - "-render", - "-res", - "-screensaver", - "-shape", - "-shm", - "-sync", - "-xevie", - "-xf86dri", - "-xfixes", - "-xinerama", - "-xprint", - "-xtest", - "-xv", - "-xvmc"]], - 'dirs': [ - 'include/xcb', - 'lib/pkgconfig'], -} - -moduleclass = 'lib' diff --git a/l/libxcb/libxcb-1.11.1-foss-2016a.eb b/l/libxcb/libxcb-1.11.1-foss-2016a.eb deleted file mode 100644 index 984e1fc5..00000000 --- a/l/libxcb/libxcb-1.11.1-foss-2016a.eb +++ /dev/null @@ -1,57 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxcb' -version = '1.11.1' - -homepage = 'http://xcb.freedesktop.org/' -description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, -latency hiding, direct access to the protocol, improved threading support, and extensibility.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://xcb.freedesktop.org/dist/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [ - ('pkg-config', '0.29'), - ('xcb-proto', '1.11', '', True), - ('xproto', '7.0.28'), - ('libpthread-stubs', '0.3'), -] -dependencies = [ - ('libXau', '1.0.8'), - ('libXdmcp', '1.1.2'), -] - -sanity_check_paths = { - 'files': [ - 'lib/libxcb%s.a' % - x for x in [ - '', - '-composite', - '-damage', - '-dpms', - '-dri2', - '-glx', - '-randr', - '-record', - '-render', - '-res', - '-screensaver', - '-shape', - '-shm', - '-sync', - '-xevie', - '-xf86dri', - '-xfixes', - '-xinerama', - '-xprint', - '-xtest', - '-xv', - '-xvmc']], - 'dirs': [ - 'include/xcb', - 'lib/pkgconfig'], -} - -moduleclass = 'lib' diff --git a/l/libxcb/libxcb-1.11.1-intel-2016a.eb b/l/libxcb/libxcb-1.11.1-intel-2016a.eb deleted file mode 100644 index f9ee2029..00000000 --- a/l/libxcb/libxcb-1.11.1-intel-2016a.eb +++ /dev/null @@ -1,56 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxcb' -version = '1.11.1' - -homepage = 'http://xcb.freedesktop.org/' -description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, -latency hiding, direct access to the protocol, improved threading support, and extensibility.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['http://xcb.freedesktop.org/dist/'] -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [ - ('xcb-proto', '1.11', '', True), - ('xproto', '7.0.28'), - ('libpthread-stubs', '0.3'), -] -dependencies = [ - ('libXau', '1.0.8'), - ('libXdmcp', '1.1.2'), -] - -sanity_check_paths = { - 'files': [ - 'lib/libxcb%s.a' % - x for x in [ - '', - '-composite', - '-damage', - '-dpms', - '-dri2', - '-glx', - '-randr', - '-record', - '-render', - '-res', - '-screensaver', - '-shape', - '-shm', - '-sync', - '-xevie', - '-xf86dri', - '-xfixes', - '-xinerama', - '-xprint', - '-xtest', - '-xv', - '-xvmc']], - 'dirs': [ - 'include/xcb', - 'lib/pkgconfig'], -} - -moduleclass = 'lib' diff --git a/l/libxkbcommon/libxkbcommon-0.6.1-foss-2016a.eb b/l/libxkbcommon/libxkbcommon-0.6.1-foss-2016a.eb deleted file mode 100644 index 5f450a09..00000000 --- a/l/libxkbcommon/libxkbcommon-0.6.1-foss-2016a.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxkbcommon' -version = '0.6.1' - -homepage = 'http://xkbcommon.org/' -description = """xkbcommon is a library to handle keyboard descriptions, - including loading them from disk, parsing them and handling their state. - It's mainly meant for client toolkits, window systems, - and other system applications.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://xkbcommon.org/download/'] -sources = [SOURCELOWER_TAR_XZ] - -dependencies = [ - ('libxcb', '1.11.1'), - ('XKeyboardConfig', '2.17'), -] - -builddependencies = [ - ('flex', '2.6.0'), - ('Bison', '3.0.4'), -] - -sanity_check_paths = { - 'files': ['lib/libxkbcommon%s.so' % x for x in ['', '-x11']], - 'dirs': [] -} - -moduleclass = 'devel' diff --git a/l/libxkbcommon/libxkbcommon-0.6.1-intel-2016a.eb b/l/libxkbcommon/libxkbcommon-0.6.1-intel-2016a.eb deleted file mode 100644 index 8611f033..00000000 --- a/l/libxkbcommon/libxkbcommon-0.6.1-intel-2016a.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxkbcommon' -version = '0.6.1' - -homepage = 'http://xkbcommon.org/' -description = """xkbcommon is a library to handle keyboard descriptions, - including loading them from disk, parsing them and handling their state. - It's mainly meant for client toolkits, window systems, - and other system applications.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['http://xkbcommon.org/download/'] -sources = [SOURCELOWER_TAR_XZ] - -dependencies = [ - ('libxcb', '1.11.1'), - ('XKeyboardConfig', '2.17'), -] - -builddependencies = [ - ('flex', '2.6.0'), - ('Bison', '3.0.4'), -] - -sanity_check_paths = { - 'files': ['lib/libxkbcommon%s.so' % x for x in ['', '-x11']], - 'dirs': [] -} - -moduleclass = 'devel' diff --git a/l/libxml2/libxml2-2.8.0-intel-2015a-Python-2.7.3.eb b/l/libxml2/libxml2-2.8.0-intel-2015a-Python-2.7.3.eb deleted file mode 100644 index f73ef8d4..00000000 --- a/l/libxml2/libxml2-2.8.0-intel-2015a-Python-2.7.3.eb +++ /dev/null @@ -1,35 +0,0 @@ -name = 'libxml2' -version = '2.8.0' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable - outside of the Gnome platform).""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' - -pythonver = '2.7.3' -pythonshortver = '.'.join(pythonver.split('.')[0:2]) -versionsuffix = '-%s-%s' % ('Python', pythonver) - -dependencies = [ - ('zlib', '1.2.8'), - ('Python', pythonver), -] - -sanity_check_paths = { - 'files': [ - ('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % - SHLIB_EXT, 'lib64/libxml2.%s' % - SHLIB_EXT)], 'dirs': [ - 'bin', 'include/libxml2/libxml'], } - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.1-foss-2015b.eb b/l/libxml2/libxml2-2.9.1-foss-2015b.eb deleted file mode 100644 index fa588abd..00000000 --- a/l/libxml2/libxml2-2.9.1-foss-2015b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxml2' -version = '2.9.1' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and -toolchain developed for the Gnome project - (but usable outside of the Gnome platform).""" - -toolchain = {'name': 'foss', 'version': '2015b'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' - -dependencies = [('zlib', '1.2.8')] - -sanity_check_paths = { - 'files': [ - ('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % - SHLIB_EXT, 'lib64/libxml2.%s' % - SHLIB_EXT)], 'dirs': [ - 'bin', 'include/libxml2/libxml'], } - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.2-foss-2015a.eb b/l/libxml2/libxml2-2.9.2-foss-2015a.eb deleted file mode 100644 index 260a1d61..00000000 --- a/l/libxml2/libxml2-2.9.2-foss-2015a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxml2' -version = '2.9.2' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and -toolchain developed for the Gnome project - (but usable outside of the Gnome platform).""" - -toolchain = {'name': 'foss', 'version': '2015a'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' - -dependencies = [('zlib', '1.2.8')] - -sanity_check_paths = { - 'files': [ - ('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % - SHLIB_EXT, 'lib64/libxml2.%s' % - SHLIB_EXT)], 'dirs': [ - 'bin', 'include/libxml2/libxml'], } - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.2-foss-2015b.eb b/l/libxml2/libxml2-2.9.2-foss-2015b.eb deleted file mode 100644 index 94842d78..00000000 --- a/l/libxml2/libxml2-2.9.2-foss-2015b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxml2' -version = '2.9.2' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and -toolchain developed for the Gnome project - (but usable outside of the Gnome platform).""" - -toolchain = {'name': 'foss', 'version': '2015b'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' - -dependencies = [('zlib', '1.2.8')] - -sanity_check_paths = { - 'files': [ - ('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % - SHLIB_EXT, 'lib64/libxml2.%s' % - SHLIB_EXT)], 'dirs': [ - 'bin', 'include/libxml2/libxml'], } - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.2-foss-2015g-Python-2.7.9.eb b/l/libxml2/libxml2-2.9.2-foss-2015g-Python-2.7.9.eb deleted file mode 100644 index 3f53d503..00000000 --- a/l/libxml2/libxml2-2.9.2-foss-2015g-Python-2.7.9.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxml2' -version = '2.9.2' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and -toolchain developed for the Gnome project - (but usable outside of the Gnome platform).""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' - -pythonver = '2.7.9' -pythonshortver = '.'.join(pythonver.split('.')[0:2]) -versionsuffix = '-%s-%s' % ('Python', pythonver) - -dependencies = [('zlib', '1.2.8'), - ('Python', pythonver), - ] - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.2-foss-2015g.eb b/l/libxml2/libxml2-2.9.2-foss-2015g.eb deleted file mode 100644 index fc557f01..00000000 --- a/l/libxml2/libxml2-2.9.2-foss-2015g.eb +++ /dev/null @@ -1,23 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxml2' -version = '2.9.2' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and -toolchain developed for the Gnome project - (but usable outside of the Gnome platform).""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' - -dependencies = [('zlib', '1.2.8')] - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.2-intel-2015a-Python-2.7.10.eb b/l/libxml2/libxml2-2.9.2-intel-2015a-Python-2.7.10.eb deleted file mode 100644 index 37724f23..00000000 --- a/l/libxml2/libxml2-2.9.2-intel-2015a-Python-2.7.10.eb +++ /dev/null @@ -1,28 +0,0 @@ -name = 'libxml2' -version = '2.9.2' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable - outside of the Gnome platform).""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' - -pythonver = '2.7.10' -pythonshortver = '.'.join(pythonver.split('.')[0:2]) -versionsuffix = '-%s-%s' % ('Python', pythonver) - -dependencies = [ - ('zlib', '1.2.8'), - ('Python', pythonver), -] - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.2-intel-2015a-Python-2.7.9.eb b/l/libxml2/libxml2-2.9.2-intel-2015a-Python-2.7.9.eb deleted file mode 100644 index 307b1793..00000000 --- a/l/libxml2/libxml2-2.9.2-intel-2015a-Python-2.7.9.eb +++ /dev/null @@ -1,28 +0,0 @@ -name = 'libxml2' -version = '2.9.2' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable - outside of the Gnome platform).""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' - -pythonver = '2.7.9' -pythonshortver = '.'.join(pythonver.split('.')[0:2]) -versionsuffix = '-%s-%s' % ('Python', pythonver) - -dependencies = [ - ('zlib', '1.2.8'), - ('Python', pythonver), -] - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.2-intel-2015a.eb b/l/libxml2/libxml2-2.9.2-intel-2015a.eb deleted file mode 100644 index e59554d7..00000000 --- a/l/libxml2/libxml2-2.9.2-intel-2015a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxml2' -version = '2.9.2' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and -toolchain developed for the Gnome project - (but usable outside of the Gnome platform).""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' - -dependencies = [('zlib', '1.2.8')] - -sanity_check_paths = { - 'files': [ - ('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % - SHLIB_EXT, 'lib64/libxml2.%s' % - SHLIB_EXT)], 'dirs': [ - 'bin', 'include/libxml2/libxml'], } - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.2-intel-2015b.eb b/l/libxml2/libxml2-2.9.2-intel-2015b.eb deleted file mode 100644 index 36cacd7d..00000000 --- a/l/libxml2/libxml2-2.9.2-intel-2015b.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxml2' -version = '2.9.2' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and -toolchain developed for the Gnome project - (but usable outside of the Gnome platform).""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' - -dependencies = [('zlib', '1.2.8')] - -sanity_check_paths = { - 'files': [ - ('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % - SHLIB_EXT, 'lib64/libxml2.%s' % - SHLIB_EXT)], 'dirs': [ - 'bin', 'include/libxml2/libxml'], } - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.3-foss-2015a-Python-2.7.11.eb b/l/libxml2/libxml2-2.9.3-foss-2015a-Python-2.7.11.eb deleted file mode 100644 index 6cafc86e..00000000 --- a/l/libxml2/libxml2-2.9.3-foss-2015a-Python-2.7.11.eb +++ /dev/null @@ -1,28 +0,0 @@ -name = 'libxml2' -version = '2.9.3' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable - outside of the Gnome platform).""" - -toolchain = {'name': 'foss', 'version': '2015a'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' - -pythonver = '2.7.11' -pythonshortver = '.'.join(pythonver.split('.')[:2]) -versionsuffix = '-%s-%s' % ('Python', pythonver) - -dependencies = [ - ('zlib', '1.2.8'), - ('Python', pythonver), -] - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.3-foss-2015a.eb b/l/libxml2/libxml2-2.9.3-foss-2015a.eb deleted file mode 100644 index 59e03317..00000000 --- a/l/libxml2/libxml2-2.9.3-foss-2015a.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxml2' -version = '2.9.3' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable - outside of the Gnome platform).""" - -toolchain = {'name': 'foss', 'version': '2015a'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' - -dependencies = [ - ('zlib', '1.2.8'), -] - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.3-foss-2016a-Python-2.7.11.eb b/l/libxml2/libxml2-2.9.3-foss-2016a-Python-2.7.11.eb deleted file mode 100644 index 0df5cbd9..00000000 --- a/l/libxml2/libxml2-2.9.3-foss-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,25 +0,0 @@ -name = 'libxml2' -version = '2.9.3' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable - outside of the Gnome platform).""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' - -dependencies = [ - ('zlib', '1.2.8'), - ('Python', '2.7.11'), -] - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.3-foss-2016a.eb b/l/libxml2/libxml2-2.9.3-foss-2016a.eb deleted file mode 100644 index e2aed002..00000000 --- a/l/libxml2/libxml2-2.9.3-foss-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxml2' -version = '2.9.3' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and -toolchain developed for the Gnome project - (but usable outside of the Gnome platform).""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' - -dependencies = [('zlib', '1.2.8')] - -sanity_check_paths = { - 'files': [ - ('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % - SHLIB_EXT, 'lib64/libxml2.%s' % - SHLIB_EXT)], 'dirs': [ - 'bin', 'include/libxml2/libxml'], } - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.3-intel-2015b-Python-2.7.10.eb b/l/libxml2/libxml2-2.9.3-intel-2015b-Python-2.7.10.eb deleted file mode 100644 index 34777c9c..00000000 --- a/l/libxml2/libxml2-2.9.3-intel-2015b-Python-2.7.10.eb +++ /dev/null @@ -1,28 +0,0 @@ -name = 'libxml2' -version = '2.9.3' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable - outside of the Gnome platform).""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' - -pythonver = '2.7.10' -pythonshortver = '.'.join(pythonver.split('.')[0:2]) -versionsuffix = '-%s-%s' % ('Python', pythonver) - -dependencies = [ - ('zlib', '1.2.8'), - ('Python', pythonver), -] - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.3-intel-2015b-Python-2.7.11.eb b/l/libxml2/libxml2-2.9.3-intel-2015b-Python-2.7.11.eb deleted file mode 100644 index b2807106..00000000 --- a/l/libxml2/libxml2-2.9.3-intel-2015b-Python-2.7.11.eb +++ /dev/null @@ -1,28 +0,0 @@ -name = 'libxml2' -version = '2.9.3' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable - outside of the Gnome platform).""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' - -pythonver = '2.7.11' -pythonshortver = '.'.join(pythonver.split('.')[:2]) -versionsuffix = '-%s-%s' % ('Python', pythonver) - -dependencies = [ - ('zlib', '1.2.8'), - ('Python', pythonver), -] - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.3-intel-2016a-Python-2.7.11.eb b/l/libxml2/libxml2-2.9.3-intel-2016a-Python-2.7.11.eb deleted file mode 100644 index 41e2af0e..00000000 --- a/l/libxml2/libxml2-2.9.3-intel-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,28 +0,0 @@ -name = 'libxml2' -version = '2.9.3' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable - outside of the Gnome platform).""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' - -pyver = '2.7.11' -pyshortver = '.'.join(pyver.split('.')[:2]) -versionsuffix = '-Python-%s' % pyver - -dependencies = [ - ('zlib', '1.2.8'), - ('Python', pyver), -] - -moduleclass = 'lib' diff --git a/l/libxml2/libxml2-2.9.3-intel-2016a.eb b/l/libxml2/libxml2-2.9.3-intel-2016a.eb deleted file mode 100644 index b02d7cfc..00000000 --- a/l/libxml2/libxml2-2.9.3-intel-2016a.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxml2' -version = '2.9.3' - -homepage = 'http://xmlsoft.org/' -description = """Libxml2 is the XML C parser and -toolchain developed for the Gnome project - (but usable outside of the Gnome platform).""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'pic': True} - -source_urls = [ - 'http://xmlsoft.org/sources/', - 'http://xmlsoft.org/sources/old/' -] -sources = [SOURCELOWER_TAR_GZ] - -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' - -dependencies = [('zlib', '1.2.8')] - -sanity_check_paths = { - 'files': [ - ('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % - SHLIB_EXT, 'lib64/libxml2.%s' % - SHLIB_EXT)], 'dirs': [ - 'bin', 'include/libxml2/libxml'], } - -moduleclass = 'lib' diff --git a/l/likwid/likwid-4.0.1-intel-2015b.eb b/l/likwid/likwid-4.0.1-intel-2015b.eb deleted file mode 100644 index a1f260e3..00000000 --- a/l/likwid/likwid-4.0.1-intel-2015b.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'likwid' -version = '4.0.1' - -homepage = 'http://code.google.com/p/likwid/' -description = """Likwid stands for Like I knew what I am doing. This project contributes easy to use - command line tools for Linux to support programmers in developing high performance multi threaded programs.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://ftp.fau.de/pub/likwid/'] - -skipsteps = ['configure'] -buildopts = 'CC="$CC" CFLAGS="$CFLAGS -std=c99"' -installopts = 'PREFIX=%(installdir)s' - -sanity_check_paths = { - 'files': [ - "bin/likwid-features", - "bin/likwid-memsweeper", - "bin/likwid-mpirun", - "bin/likwid-perfctr", - "bin/likwid-perfscope", - "bin/likwid-pin", - "bin/likwid-powermeter", - "bin/likwid-topology", - "lib/liblikwidpin.so", - "lib/liblikwid.a"], - 'dirs': ["man/man1"]} - -moduleclass = 'devel' diff --git a/l/lxml/lxml-3.4.4-intel-2015b-Python-2.7.9.eb b/l/lxml/lxml-3.4.4-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index 2ed06bf8..00000000 --- a/l/lxml/lxml-3.4.4-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = "PythonPackage" - -name = 'lxml' -version = '3.4.4' - -homepage = 'http://lxml.de/' -description = """The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['http://lxml.de/files/'] -sources = [SOURCE_TGZ] - -python = 'Python' -pythonversion = '2.7.9' -pyshortver = '.'.join(pythonversion.split('.')[:2]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - -dependencies = [ - (python, pythonversion), - ('libxml2', '2.9.2'), - ('libxslt', '1.1.28'), -] - -pylibdir = "lib/python%s/site-packages/%%(name)s" % pyshortver - -sanity_check_paths = { - 'files': [], 'dirs': [ - ('%s-%%(version)s-py%s.egg' % - (pylibdir, pyshortver), '%s-%%(version)s-py%s-linux-x86_64.egg' % - (pylibdir, pyshortver))], } - -moduleclass = 'lib' diff --git a/m/MATIO/MATIO-1.5.2-intel-2015b.eb b/m/MATIO/MATIO-1.5.2-intel-2015b.eb deleted file mode 100644 index 9fb67afb..00000000 --- a/m/MATIO/MATIO-1.5.2-intel-2015b.eb +++ /dev/null @@ -1,24 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2014-2015 The Cyprus Institute -# Authors:: Thekla Loizou -# License:: MIT/GPL -# -## -easyblock = 'ConfigureMake' - -name = 'MATIO' -version = '1.5.2' - -homepage = 'http://sourceforge.net/projects/matio/' -description = """matio is an C library for reading and writing Matlab MAT files.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCELOWER_ZIP] - -dependencies = [('zlib', '1.2.8')] - -moduleclass = 'lib' diff --git a/m/MDSplus/MDSplus-7.0.67-foss-2016a-Java-1.7.0_79-Python-2.7.11.eb b/m/MDSplus/MDSplus-7.0.67-foss-2016a-Java-1.7.0_79-Python-2.7.11.eb deleted file mode 100644 index b5723263..00000000 --- a/m/MDSplus/MDSplus-7.0.67-foss-2016a-Java-1.7.0_79-Python-2.7.11.eb +++ /dev/null @@ -1,35 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'MDSplus' -version = '7.0.67' -versionsuffix = '-Java-%(javaver)s-Python-%(pyver)s' - -homepage = 'http://mdsplus.org/' -description = """MDSplus is a set of software tools for data acquisition and storage and a - methodology for management of complex scientific data.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://github.com/%(name)s/%(namelower)s/archive'] -sources = ['stable_release-%s.zip' % version.replace('.', '-')] - -dependencies = [ - ('Java', '1.7.0_79', '', True), - ('Python', '2.7.11'), - ('HDF5', '1.8.16'), - ('libxml2', '2.9.3', '-Python-%(pyver)s'), - ('zlib', '1.2.8') -] - -configopts = '--with-jdk=$JAVA_HOME' - -preconfigopts = 'export CFLAGS="$CFLAGS -I$EBROOTLIBXML2/include/libxml2 " && ' - -parallel = 1 - -modextravars = { - 'MDSPLUS_DIR': '%(installdir)s', - 'MDS_PATH': '%(installdir)s/tdi', -} - -moduleclass = 'data' diff --git a/m/MIGRATE-N/MIGRATE-N-4.2.8-foss-2016a.eb b/m/MIGRATE-N/MIGRATE-N-4.2.8-foss-2016a.eb deleted file mode 100644 index 01a23623..00000000 --- a/m/MIGRATE-N/MIGRATE-N-4.2.8-foss-2016a.eb +++ /dev/null @@ -1,42 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'MIGRATE-N' -version = '4.2.8' - -homepage = 'http://popgen.sc.fsu.edu/Migrate/Migrate-n.html' -description = """ -Migrate estimates population parameters, effective population sizes -and migration rates of n populations, using genetic data. It -uses a coalescent theory approach taking into account history of -mutations and uncertainty of the genealogy. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = ['migrate-%(version)s.src.tar.gz'] -source_urls = [ - 'http://popgen.sc.fsu.edu/currentversions/', - 'http://popgen.sc.fsu.edu/oldversions/%(version_major)s.x/%(version_major_minor)s', - 'http://popgen.sc.fsu.edu/oldversions/', - 'http://popgen.sc.fsu.edu/newversions/', -] - -patches = [ - 'migrate-%(version)s_install.patch', -] - -dependencies = [ - ('zlib', '1.2.8'), -] - -configopts = '--enable-A4 "CC=$CC" STDCPLUS=-lstdc++ ' -prebuildopts = 'make mpis && make clean && ' - -start_dir = 'src' - -sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['migrate-n', 'migrate-n-mpi']], - 'dirs': ['man'], -} - -moduleclass = 'bio' diff --git a/m/MPI_NET/MPI_NET-1.2.0-intel-2016.01.eb b/m/MPI_NET/MPI_NET-1.2.0-intel-2016.01.eb deleted file mode 100644 index efcb0f63..00000000 --- a/m/MPI_NET/MPI_NET-1.2.0-intel-2016.01.eb +++ /dev/null @@ -1,32 +0,0 @@ -name = 'MPI_NET' -version = '1.2.0' - -easyblock = 'ConfigureMake' - -homepage = 'http://www.osl.iu.edu/research/mpi.net/' -description = """MPI.NET is a high-performance, easy-to-use implementation of the Message Passing Interface (MPI) -for Microsoft's .NET environment""" - -toolchain = {'name': 'intel', 'version': '2016.01'} - -dependencies = [('Mono', '4.2.2.10')] - -patches = [('mpi.net-1.2.0-unsafe.patch', 1), - ('configure.ac.patch') - ] - -preconfigopts = 'sh ./autogen.sh && ' - -prebuildopts = 'cd MPI && perl ./Unsafe.pl $EBROOTIMPI/include64/mpi.h ./Unsafe.cs CustomUnsafe.cs cbridge.c && cd .. && ' - -sources = ['MPI.NET-%(version)s.tar.gz'] -source_urls = ['https://github.com/jmp75/%(name)s/archive/'] - -sanity_check_paths = { - 'files': ['lib/MPI.dll'], - 'dirs': ['lib'], -} - -maxparallel = 4 - -moduleclass = 'mpi' diff --git a/m/MPJ-Express/MPJ-Express-0.44-foss-2016a-Java-1.8.0_92.eb b/m/MPJ-Express/MPJ-Express-0.44-foss-2016a-Java-1.8.0_92.eb deleted file mode 100644 index 8dfe3766..00000000 --- a/m/MPJ-Express/MPJ-Express-0.44-foss-2016a-Java-1.8.0_92.eb +++ /dev/null @@ -1,47 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# sciCORE - University of Basel -# SIB Swiss Institute of Bioinformatics - -easyblock = 'Tarball' - -name = 'MPJ-Express' -version = '0.44' -versionsuffix = '-Java-%(javaver)s' - -homepage = 'http://mpj-express.org/' -description = """MPJ Express is an open source Java message passing library that allows application - developers to write and execute parallel applications for multicore processors and compute clusters/clouds.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://sourceforge.net/projects/mpjexpress/files/releases/'] -sources = ['mpj-v%s.tar.gz' % (version.replace('.', '_'))] - -builddependencies = [('CMake', '3.5.2')] - -dependencies = [ - ('Java', '1.8.0_92', '', True), -] - -# compile JNI wrapper library as described in docs -# http://mpj-express.org/docs/readme/README -postinstallcmds = [ - "mkdir %(installdir)s/src/mpjdev/natmpjdev/lib/build", - "cd %(installdir)s/src/mpjdev/natmpjdev/lib/build && cmake .. && make && make install DESTDIR=%(installdir)s", -] - -modextrapaths = { - 'CLASSPATH': 'lib', -} - -modextravars = { - 'MPJ_HOME': '$root', # MPJ_HOME points to install directory -} - -sanity_check_paths = { - 'files': ['lib/libnativempjdev.so', 'bin/mpjrun.sh'], - 'dirs': [] -} - -moduleclass = 'lib' diff --git a/m/MVAPICH2/MVAPICH2-1.9-intel-2015b.eb b/m/MVAPICH2/MVAPICH2-1.9-intel-2015b.eb deleted file mode 100644 index 354f5d21..00000000 --- a/m/MVAPICH2/MVAPICH2-1.9-intel-2015b.eb +++ /dev/null @@ -1,16 +0,0 @@ -name = 'MVAPICH2' -version = '1.9' - -homepage = 'http://mvapich.cse.ohio-state.edu/overview/mvapich2/' -description = "This is an MPI 3.0 implementation. It is based on MPICH2 and MVICH." - -toolchain = {'name': 'intel', 'version': '2015b'} - -osdependencies = [('libibmad-devel', 'libibmad-dev')] - -source_urls = ['http://mvapich.cse.ohio-state.edu/download/mvapich2/'] -sources = [SOURCELOWER_TGZ] - -builddependencies = [('Bison', '2.7')] - -moduleclass = 'mpi' diff --git a/m/MariaDB/MariaDB-10.1.13-intel-2016a.eb b/m/MariaDB/MariaDB-10.1.13-intel-2016a.eb deleted file mode 100644 index 426a4f73..00000000 --- a/m/MariaDB/MariaDB-10.1.13-intel-2016a.eb +++ /dev/null @@ -1,47 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'MariaDB' -version = '10.1.13' - -homepage = 'https://mariadb.org/' -description = """MariaDB An enhanced, drop-in replacement for MySQL.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['https://downloads.mariadb.org/f/mariadb-%(version)s/source'] -sources = [SOURCELOWER_TAR_GZ] - -patches = [ - 'MariaDB-%(version)s-remove-Werror.patch', - 'MariaDB-%(version)s-link-rt-for-jemalloc.patch', -] - -dependencies = [ - ('zlib', '1.2.8'), - ('ncurses', '6.0'), - ('jemalloc', '4.1.0'), - ('PCRE', '8.38'), - ('XZ', '5.2.2'), - ('Boost', '1.60.0', '-Python-2.7.11'), - ('libxml2', '2.9.3'), -] - -builddependencies = [('CMake', '3.4.3')] - -separate_build_dir = True - -configopts = "-DWITH_PCRE=system -DWITH_JEMALLOC=yes -DWITH_ZLIB=system -DMYSQL_MAINTAINER_MODE=ON" - -sanity_check_paths = { - 'files': [ - 'bin/mysql', - 'bin/mysqld_safe', - 'lib/libmysqlclient.%s' % - SHLIB_EXT, - 'scripts/mysql_install_db'], - 'dirs': [ - 'include', - 'share'], -} - -moduleclass = 'data' diff --git a/m/Meep/Meep-1.3-intel-2015a.eb b/m/Meep/Meep-1.3-intel-2015a.eb deleted file mode 100644 index 3a087838..00000000 --- a/m/Meep/Meep-1.3-intel-2015a.eb +++ /dev/null @@ -1,41 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Meep' -version = '1.3' - -homepage = 'http://ab-initio.mit.edu/wiki/index.php/Meep' -description = """Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package - developed at MIT to model electromagnetic systems.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = { - 'usempi': True, - 'opt': True, - 'optarch': True, - 'unroll': True, - 'pic': True} - -source_urls = [ - 'http://ab-initio.mit.edu/meep/', - 'http://ab-initio.mit.edu/meep/old/', -] -sources = [SOURCELOWER_TAR_GZ] - -patches = ['Meep-%(version)s_version-string-without-spaces.patch'] - -dependencies = [ - ('Harminv', '1.4'), - ('HDF5', '1.8.14'), - ('libctl', '3.2.2'), - ('GSL', '1.16'), - ('FFTW', '3.3.4') -] - -configopts = "--with-pic --with-mpi --with-blas=mkl_em64t --with-lapack=mkl_em64t --without-gcc-arch " -configopts += "--with-libctl=$EBROOTLIBCTL/share/libctl --enable-shared " - -# fix for guile-config being broken because shebang line contains full -# path to bin/guile -configopts += 'GUILE_CONFIG="$EBROOTGUILE/bin/guile -e main -s $EBROOTGUILE/bin/guile-config"' - -moduleclass = 'phys' diff --git a/m/Meep/Meep-1.3-intel-2015b.eb b/m/Meep/Meep-1.3-intel-2015b.eb deleted file mode 100644 index a8e2707a..00000000 --- a/m/Meep/Meep-1.3-intel-2015b.eb +++ /dev/null @@ -1,41 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Meep' -version = '1.3' - -homepage = 'http://ab-initio.mit.edu/wiki/index.php/Meep' -description = """Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package - developed at MIT to model electromagnetic systems.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = { - 'usempi': True, - 'opt': True, - 'optarch': True, - 'unroll': True, - 'pic': True} - -source_urls = [ - 'http://ab-initio.mit.edu/meep/', - 'http://ab-initio.mit.edu/meep/old/', -] -sources = [SOURCELOWER_TAR_GZ] - -patches = ['Meep-%(version)s_version-string-without-spaces.patch'] - -dependencies = [ - ('Harminv', '1.4'), - ('HDF5', '1.8.13'), - ('libctl', '3.2.2'), - ('GSL', '1.16'), - ('FFTW', '3.3.4') -] - -configopts = "--with-pic --with-mpi --with-blas=mkl_em64t --with-lapack=mkl_em64t --without-gcc-arch " -configopts += "--with-libctl=$EBROOTLIBCTL/share/libctl --enable-shared " - -# fix for guile-config being broken because shebang line contains full -# path to bin/guile -configopts += 'GUILE_CONFIG="$EBROOTGUILE/bin/guile -e main -s $EBROOTGUILE/bin/guile-config"' - -moduleclass = 'phys' diff --git a/m/Mercurial/Mercurial-3.2.4-foss-2015a-Python-2.7.9.eb b/m/Mercurial/Mercurial-3.2.4-foss-2015a-Python-2.7.9.eb deleted file mode 100644 index 047324c7..00000000 --- a/m/Mercurial/Mercurial-3.2.4-foss-2015a-Python-2.7.9.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = "PythonPackage" - -name = 'Mercurial' -version = '3.2.4' - -homepage = 'http://mercurial.selenic.com/' -description = """Mercurial is a free, distributed source control management tool. It efficiently handles projects -of any size and offers an easy and intuitive interface. -""" - -toolchain = {'name': 'foss', 'version': '2015a'} - -source_urls = ['http://mercurial.selenic.com/release/'] -sources = [SOURCELOWER_TAR_GZ] - -python = "Python" -pythonversion = '2.7.9' -pythonshortversion = ".".join(pythonversion.split(".")[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - -dependencies = [(python, pythonversion)] - -sanity_check_paths = { - 'files': ['bin/hg'], - 'dirs': ['lib/python%s/site-packages/mercurial' % pythonshortversion], -} - -moduleclass = 'tools' diff --git a/m/Mercurial/Mercurial-3.5-intel-2015b-Python-2.7.9.eb b/m/Mercurial/Mercurial-3.5-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index 4e2aac77..00000000 --- a/m/Mercurial/Mercurial-3.5-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = "PythonPackage" - -name = 'Mercurial' -version = '3.5' - -homepage = 'http://mercurial.selenic.com/' -description = """Mercurial is a free, distributed source control management tool. It efficiently handles projects -of any size and offers an easy and intuitive interface. -""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['http://mercurial.selenic.com/release/'] -sources = [SOURCELOWER_TAR_GZ] - -python = "Python" -pythonversion = '2.7.9' -pythonshortversion = ".".join(pythonversion.split(".")[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - -dependencies = [(python, pythonversion)] - -sanity_check_paths = { - 'files': ['bin/hg'], - 'dirs': ['lib/python%s/site-packages/mercurial' % pythonshortversion], -} - -moduleclass = 'tools' diff --git a/m/Mercurial/Mercurial-3.7.3-foss-2015g-Python-2.7.9.eb b/m/Mercurial/Mercurial-3.7.3-foss-2015g-Python-2.7.9.eb deleted file mode 100644 index 691cf837..00000000 --- a/m/Mercurial/Mercurial-3.7.3-foss-2015g-Python-2.7.9.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = "PythonPackage" - -name = 'Mercurial' -version = '3.7.3' - -homepage = 'http://mercurial.selenic.com/' -description = """Mercurial is a free, distributed source control management tool. It efficiently handles projects -of any size and offers an easy and intuitive interface. -""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = ['http://mercurial.selenic.com/release/'] -sources = [SOURCELOWER_TAR_GZ] - -python = "Python" -pythonversion = '2.7.9' -pythonshortversion = ".".join(pythonversion.split(".")[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - -dependencies = [(python, pythonversion)] - -sanity_check_paths = { - 'files': ['bin/hg'], - 'dirs': ['lib/python%s/site-packages/mercurial' % pythonshortversion], -} - -moduleclass = 'tools' diff --git a/m/Mesa/Mesa-10.4.5-intel-2015a-Python-2.7.9.eb b/m/Mesa/Mesa-10.4.5-intel-2015a-Python-2.7.9.eb deleted file mode 100644 index bb09f864..00000000 --- a/m/Mesa/Mesa-10.4.5-intel-2015a-Python-2.7.9.eb +++ /dev/null @@ -1,81 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Mesa' -version = '10.4.5' - -homepage = 'http://www.mesa3d.org/' -description = """Mesa is an open-source implementation of the OpenGL specification - - a system for rendering interactive 3D graphics.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'optarch': True} - -sources = ['%(name)sLib-%(version)s.tar.gz'] -source_urls = [ - 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', - 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', -] - -patches = ['Mesa-%(version)s_sse4_1.patch'] - -pythonver = '2.7.9' -pythonshortver = '.'.join(pythonver.split('.')[0:2]) -versionsuffix = '-%s-%s' % ('Python', pythonver) - -builddependencies = [ - ('flex', '2.5.39'), - ('Bison', '3.0.2'), - ('Automake', '1.15'), - ('makedepend', '1.0.5'), - ('kbproto', '1.0.6'), - ('xextproto', '7.3.0'), - ('xproto', '7.0.27'), - ('libtool', '2.4.5'), - ('pkg-config', '0.28'), - ('glproto', '1.4.17'), - ('M4', '1.4.17') -] - -dependencies = [ - ('Python', pythonver), - ('libxml2', '2.9.2', versionsuffix), - ('libdrm', '2.4.59'), - ('libX11', '1.6.3', versionsuffix), - ('libXext', '1.3.3'), - ('libXfixes', '5.0.1'), - ('libXdamage', '1.1.4'), - ('libXfont', '1.5.1'), - ('LLVM', '3.6.2', versionsuffix), - ('eudev', '3.0'), -] - -# Use the os provided libudev or the EB provided eudev -#osdependencies = ['libudev'] - -# GLU is not part anymore of Mesa package! -configopts = " --disable-osmesa --disable-gallium-llvm --enable-glx --disable-dri --enable-xlib-glx" -configopts += " --disable-driglx-direct --with-gallium-drivers='' --disable-egl""" - -# package-config files for os dependencies are in an os specific place -#preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' - -prebuildopts = 'env CPATH="$EBROOTLIBDRM/include/libdrm:$CPATH" ' - -sanity_check_paths = { - 'files': [ - 'lib/libGL.%s' % - SHLIB_EXT, - 'include/GL/glext.h', - 'include/GL/gl_mangle.h', - 'include/GL/glx.h', - 'include/GL/osmesa.h', - 'include/GL/wglext.h', - 'include/GL/gl.h', - 'include/GL/glxext.h', - 'include/GL/glx_mangle.h', - 'include/GL/wmesa.h'], - 'dirs': []} - -maxparallel = 1 - -moduleclass = 'vis' diff --git a/m/Mesa/Mesa-10.5.5-intel-2015a-Python-2.7.10.eb b/m/Mesa/Mesa-10.5.5-intel-2015a-Python-2.7.10.eb deleted file mode 100644 index 592c4a11..00000000 --- a/m/Mesa/Mesa-10.5.5-intel-2015a-Python-2.7.10.eb +++ /dev/null @@ -1,74 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Mesa' -version = '10.5.5' - -homepage = 'http://www.mesa3d.org/' -description = """Mesa is an open-source implementation of the OpenGL specification - - a system for rendering interactive 3D graphics.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'optarch': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [ - 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', - 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', -] - -pythonver = '2.7.10' -pythonshortver = '.'.join(pythonver.split('.')[0:2]) -versionsuffix = '-%s-%s' % ('Python', pythonver) - -builddependencies = [ - ('flex', '2.5.39', '', ('GCC', '4.9.2')), - ('Bison', '3.0.4', '', ('GCC', '4.9.2')), - ('Autotools', '20150119', '', ('GCC', '4.9.2')), - ('pkg-config', '0.28', '', ('GCC', '4.9.2')), - ('glproto', '1.4.17'), - ('kbproto', '1.0.6'), - ('xextproto', '7.3.0'), - ('xproto', '7.0.27'), - ('makedepend', '1.0.5'), - ('M4', '1.4.17', '', ('GCC', '4.9.2')), -] - -dependencies = [ - ('Python', pythonver), - ('libxml2', '2.9.2'), - ('libdrm', '2.4.59'), - ('libX11', '1.6.3', versionsuffix), - ('libXext', '1.3.3', versionsuffix), - ('libXfixes', '5.0.1'), - ('libXdamage', '1.1.4', versionsuffix), - ('libXfont', '1.5.1', versionsuffix), - ('LLVM', '3.6.2'), - ('eudev', '3.0'), -] - -# Use the os provided libudev or the EB provided eudev -#osdependencies = ['libudev'] - -# GLU is not part anymore of Mesa package! -configopts = " --disable-osmesa --enable-gallium-osmesa --enable-gallium-llvm --enable-glx --disable-dri --enable-xlib-glx" -configopts += " --disable-driglx-direct --with-gallium-drivers='swrast' --disable-egl --with-osmesa-bits=32 --enable-texture-float " - -# package-config files for os dependencies are in an os specific place -#preconfigopts = 'libtoolize && PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' -preconfigopts = ' libtoolize && ' - -prebuildopts = 'env CPATH="$EBROOTLIBDRM/include/libdrm:$CPATH" ' - -sanity_check_paths = { - 'files': ['lib/libGL.%s' % SHLIB_EXT, 'lib/libOSMesa.%s' % SHLIB_EXT, - 'include/GL/glext.h', 'include/GL/gl_mangle.h', - 'include/GL/glx.h', 'include/GL/osmesa.h', - 'include/GL/wglext.h', 'include/GL/gl.h', - 'include/GL/glxext.h', 'include/GL/glx_mangle.h', - 'include/GL/wmesa.h'], - 'dirs': [] -} - -maxparallel = 1 - -moduleclass = 'vis' diff --git a/m/Mesa/Mesa-11.0.2-intel-2015b-Python-2.7.10.eb b/m/Mesa/Mesa-11.0.2-intel-2015b-Python-2.7.10.eb deleted file mode 100644 index 55bb207b..00000000 --- a/m/Mesa/Mesa-11.0.2-intel-2015b-Python-2.7.10.eb +++ /dev/null @@ -1,86 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Mesa' -version = '11.0.2' - -homepage = 'http://www.mesa3d.org/' -description = """Mesa is an open-source implementation of the OpenGL specification - - a system for rendering interactive 3D graphics.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'optarch': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [ - 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', - 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', -] - -pythonver = '2.7.10' -pythonshortver = '.'.join(pythonver.split('.')[0:2]) -versionsuffix = '-%s-%s' % ('Python', pythonver) - -builddependencies = [ - ('flex', '2.5.39'), - ('Bison', '3.0.4'), - ('Autotools', '20150215', '', ('GNU', '4.9.3-2.25')), - ('pkg-config', '0.29'), - ('glproto', '1.4.17'), - ('kbproto', '1.0.7'), - ('xextproto', '7.3.0'), - ('xproto', '7.0.28'), - ('makedepend', '1.0.5'), -] - -dependencies = [ - ('Python', pythonver), - ('libxml2', '2.9.2'), - ('libdrm', '2.4.64'), - ('libX11', '1.6.3', versionsuffix), - ('libXext', '1.3.3'), - ('libXfixes', '5.0.1'), - ('libXdamage', '1.1.4'), - ('libXfont', '1.5.1'), - ('LLVM', '3.7.0'), - ('eudev', '3.1.2'), -] - -# Use the os provided libudev or the EB provided eudev -#osdependencies = ['libudev'] - -# GLU is not part anymore of Mesa package! -configopts = " --disable-osmesa --enable-gallium-osmesa --enable-gallium-llvm --enable-glx --disable-dri --enable-xlib-glx" -configopts += " --disable-driglx-direct --with-gallium-drivers='swrast' --disable-egl --with-osmesa-bits=32 --enable-texture-float " - -# package-config files for os dependencies are in an os specific place -#preconfigopts = 'libtoolize && PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' -preconfigopts = ' libtoolize && ' - -prebuildopts = 'env CPATH="$EBROOTLIBDRM/include/libdrm:$CPATH" ' - -sanity_check_paths = { - 'files': [ - 'lib/libGL.%s' % - SHLIB_EXT, - 'lib/libOSMesa.%s' % - SHLIB_EXT, - 'lib/libGLESv1_CM.%s' % - SHLIB_EXT, - 'lib/libGLESv2.%s' % - SHLIB_EXT, - 'include/GL/glext.h', - 'include/GL/gl_mangle.h', - 'include/GL/glx.h', - 'include/GL/osmesa.h', - 'include/GL/wglext.h', - 'include/GL/gl.h', - 'include/GL/glxext.h', - 'include/GL/glx_mangle.h', - 'include/GLES/gl.h', - 'include/GLES2/gl2.h', - 'include/GLES3/gl3.h'], - 'dirs': []} - -maxparallel = 1 - -moduleclass = 'vis' diff --git a/m/Mesa/Mesa-11.0.8-foss-2015g-Python-2.7.9.eb b/m/Mesa/Mesa-11.0.8-foss-2015g-Python-2.7.9.eb deleted file mode 100644 index 922ec73e..00000000 --- a/m/Mesa/Mesa-11.0.8-foss-2015g-Python-2.7.9.eb +++ /dev/null @@ -1,80 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Mesa' -version = '11.0.8' - -homepage = 'http://www.mesa3d.org/' -description = """Mesa is an open-source implementation of the OpenGL specification - - a system for rendering interactive 3D graphics.""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'optarch': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [ - 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', - 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', -] - -pythonver = '2.7.9' -pythonshortver = '.'.join(pythonver.split('.')[0:2]) -versionsuffix = '-%s-%s' % ('Python', pythonver) - -builddependencies = [ - ('flex', '2.5.39'), - ('Bison', '3.0.2'), - ('Autotools', '20150215', '', ('GNU', '4.9.3-2.25')), - ('pkg-config', '0.27.1'), - ('glproto', '1.4.16'), - ('kbproto', '1.0.6'), - ('xextproto', '7.3.0'), - ('xproto', '7.0.26'), - ('makedepend', '1.0.4'), -] - -dependencies = [ - ('Python', pythonver), - ('libxml2', '2.9.2', versionsuffix), - ('libdrm', '2.4.27'), - ('libX11', '1.6.2', versionsuffix), - ('libXext', '1.3.3', versionsuffix), - ('libXfixes', '5.0.1'), - ('libXdamage', '1.1.4', versionsuffix), - ('libXfont', '1.5.1', versionsuffix), - ('LLVM', '3.7.1'), - #('eudev', '3.1.5'), -] - -# Use the os provided libudev or the EB provided eudev -#osdependencies = ['libudev'] - -# GLU is not part anymore of Mesa package! -#configopts = " --disable-osmesa --enable-gallium-osmesa --enable-gallium-llvm --enable-glx --disable-dri --enable-xlib-glx" -#configopts += " --disable-driglx-direct --with-gallium-drivers='swrast' --disable-egl --with-osmesa-bits=32 --enable-texture-float " - -#configopts = "--disable-xvmc --disable-glx --disable-dri --with-dri-drivers= --with-gallium-drivers=swrast --enable-texture-float --disable-shared-glapi --disable-egl" -#configopts += " --with-egl-platforms= --enable-gallium-osmesa --enable-gallium-llvm=yes --with-llvm-shared-libs" - -configopts = "--enable-osmesa --disable-driglx-direct --disable-dri --with-gallium-drivers=swrast --enable-gallium-llvm --disable-egl --enable-glx-tls" - -# package-config files for os dependencies are in an os specific place -#preconfigopts = 'libtoolize && PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' -preconfigopts = ' libtoolize && ' - -prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' - -sanity_check_paths = { - 'files': ['lib/libOSMesa.so', - 'lib/libGLESv1_CM.so', 'lib/libGLESv2.so', - 'include/GL/glext.h', 'include/GL/gl_mangle.h', - 'include/GL/glx.h', 'include/GL/osmesa.h', - 'include/GL/wglext.h', 'include/GL/gl.h', - 'include/GL/glxext.h', 'include/GL/glx_mangle.h', - 'include/GLES/gl.h', 'include/GLES2/gl2.h', - 'include/GLES3/gl3.h'], - 'dirs': [] -} - -maxparallel = 1 - -moduleclass = 'vis' diff --git a/m/Mesa/Mesa-11.0.8-intel-2015b-Python-2.7.11.eb b/m/Mesa/Mesa-11.0.8-intel-2015b-Python-2.7.11.eb deleted file mode 100644 index a22cf02d..00000000 --- a/m/Mesa/Mesa-11.0.8-intel-2015b-Python-2.7.11.eb +++ /dev/null @@ -1,75 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Mesa' -version = '11.0.8' - -homepage = 'http://www.mesa3d.org/' -description = """Mesa is an open-source implementation of the OpenGL specification - - a system for rendering interactive 3D graphics.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'optarch': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [ - 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', - 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', -] - -pythonver = '2.7.11' -pythonshortver = '.'.join(pythonver.split('.')[0:2]) -versionsuffix = '-%s-%s' % ('Python', pythonver) - -builddependencies = [ - ('flex', '2.5.39'), - ('Bison', '3.0.4'), - ('Autotools', '20150215', '', ('GNU', '4.9.3-2.25')), - ('pkg-config', '0.29'), - ('glproto', '1.4.17'), - ('kbproto', '1.0.7'), - ('xextproto', '7.3.0'), - ('xproto', '7.0.28'), - ('makedepend', '1.0.5'), -] - -dependencies = [ - ('Python', pythonver), - ('libxml2', '2.9.3', versionsuffix), - ('libdrm', '2.4.66'), - ('libX11', '1.6.3', versionsuffix), - ('libXext', '1.3.3', versionsuffix), - ('libXfixes', '5.0.1'), - ('libXdamage', '1.1.4', versionsuffix), - ('libXfont', '1.5.1', versionsuffix), - ('LLVM', '3.7.1'), - ('eudev', '3.1.5'), -] - -# Use the os provided libudev or the EB provided eudev -#osdependencies = ['libudev'] - -# GLU is not part anymore of Mesa package! -configopts = " --disable-osmesa --enable-gallium-osmesa --enable-gallium-llvm --enable-glx --disable-dri --enable-xlib-glx" -configopts += " --disable-driglx-direct --with-gallium-drivers='swrast' --disable-egl --with-osmesa-bits=32 --enable-texture-float " - -# package-config files for os dependencies are in an os specific place -#preconfigopts = 'libtoolize && PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' -preconfigopts = ' libtoolize && ' - -prebuildopts = 'env CPATH="$EBROOTLIBDRM/include/libdrm:$CPATH" ' - -sanity_check_paths = { - 'files': ['lib/libGL.so', 'lib/libOSMesa.so', - 'lib/libGLESv1_CM.so', 'lib/libGLESv2.so', - 'include/GL/glext.h', 'include/GL/gl_mangle.h', - 'include/GL/glx.h', 'include/GL/osmesa.h', - 'include/GL/wglext.h', 'include/GL/gl.h', - 'include/GL/glxext.h', 'include/GL/glx_mangle.h', - 'include/GLES/gl.h', 'include/GLES2/gl2.h', - 'include/GLES3/gl3.h'], - 'dirs': [] -} - -maxparallel = 1 - -moduleclass = 'vis' diff --git a/m/Mesa/Mesa-11.1.2-foss-2016a.eb b/m/Mesa/Mesa-11.1.2-foss-2016a.eb deleted file mode 100644 index 6a94147e..00000000 --- a/m/Mesa/Mesa-11.1.2-foss-2016a.eb +++ /dev/null @@ -1,83 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Mesa' -version = '11.1.2' - -homepage = 'http://www.mesa3d.org/' -description = """Mesa is an open-source implementation of the OpenGL specification - - a system for rendering interactive 3D graphics.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'optarch': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [ - 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', - 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', -] - -builddependencies = [ - ('flex', '2.6.0'), - ('Bison', '3.0.4'), - ('Autotools', '20150215'), - ('pkg-config', '0.29'), - ('glproto', '1.4.17'), - ('kbproto', '1.0.7'), - ('libpthread-stubs', '0.3'), - ('xextproto', '7.3.0'), - ('xproto', '7.0.28'), - ('makedepend', '1.0.5'), -] - -dependencies = [ - ('libxml2', '2.9.3'), - ('libdrm', '2.4.67'), - ('libX11', '1.6.3',), - ('libXext', '1.3.3'), - ('libXfixes', '5.0.1'), - ('libXdamage', '1.1.4'), - ('libXfont', '1.5.1'), - ('LLVM', '3.7.1'), - ('eudev', '3.1.5'), -] - -# Use the os provided libudev or the EB provided eudev -#osdependencies = ['libudev'] - -# GLU is not part anymore of Mesa package! -configopts = " --disable-osmesa --enable-gallium-osmesa --enable-gallium-llvm --enable-glx --disable-dri" -configopts += " --enable-xlib-glx --disable-driglx-direct --with-gallium-drivers='swrast' --disable-egl" -configopts += " --with-osmesa-bits=32 --enable-texture-float " - -# package-config files for os dependencies are in an os specific place -#preconfigopts = 'libtoolize && PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' -preconfigopts = ' libtoolize && ' - -prebuildopts = 'env CPATH="$EBROOTLIBDRM/include/libdrm:$CPATH" ' - -sanity_check_paths = { - 'files': [ - 'lib/libGL.%s' % - SHLIB_EXT, - 'lib/libOSMesa.%s' % - SHLIB_EXT, - 'lib/libGLESv1_CM.%s' % - SHLIB_EXT, - 'lib/libGLESv2.%s' % - SHLIB_EXT, - 'include/GL/glext.h', - 'include/GL/gl_mangle.h', - 'include/GL/glx.h', - 'include/GL/osmesa.h', - 'include/GL/wglext.h', - 'include/GL/gl.h', - 'include/GL/glxext.h', - 'include/GL/glx_mangle.h', - 'include/GLES/gl.h', - 'include/GLES2/gl2.h', - 'include/GLES3/gl3.h'], - 'dirs': []} - -maxparallel = 1 - -moduleclass = 'vis' diff --git a/m/Mesa/Mesa-11.1.2-intel-2016a.eb b/m/Mesa/Mesa-11.1.2-intel-2016a.eb deleted file mode 100644 index 70c610ad..00000000 --- a/m/Mesa/Mesa-11.1.2-intel-2016a.eb +++ /dev/null @@ -1,83 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Mesa' -version = '11.1.2' - -homepage = 'http://www.mesa3d.org/' -description = """Mesa is an open-source implementation of the OpenGL specification - - a system for rendering interactive 3D graphics.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'optarch': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [ - 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', - 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', -] - -builddependencies = [ - ('flex', '2.6.0'), - ('Bison', '3.0.4'), - ('Autotools', '20150215'), - ('pkg-config', '0.29'), - ('glproto', '1.4.17'), - ('kbproto', '1.0.7'), - ('libpthread-stubs', '0.3'), - ('xextproto', '7.3.0'), - ('xproto', '7.0.28'), - ('makedepend', '1.0.5'), -] - -dependencies = [ - ('libxml2', '2.9.3'), - ('libdrm', '2.4.67'), - ('libX11', '1.6.3',), - ('libXext', '1.3.3'), - ('libXfixes', '5.0.1'), - ('libXdamage', '1.1.4'), - ('libXfont', '1.5.1'), - ('LLVM', '3.7.1'), - ('eudev', '3.1.5'), -] - -# Use the os provided libudev or the EB provided eudev -#osdependencies = ['libudev'] - -# GLU is not part anymore of Mesa package! -configopts = " --disable-osmesa --enable-gallium-osmesa --enable-gallium-llvm --enable-glx --disable-dri" -configopts += " --enable-xlib-glx --disable-driglx-direct --with-gallium-drivers='swrast' --disable-egl" -configopts += " --with-osmesa-bits=32 --enable-texture-float " - -# package-config files for os dependencies are in an os specific place -#preconfigopts = 'libtoolize && PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' -preconfigopts = ' libtoolize && ' - -prebuildopts = 'env CPATH="$EBROOTLIBDRM/include/libdrm:$CPATH" ' - -sanity_check_paths = { - 'files': [ - 'lib/libGL.%s' % - SHLIB_EXT, - 'lib/libOSMesa.%s' % - SHLIB_EXT, - 'lib/libGLESv1_CM.%s' % - SHLIB_EXT, - 'lib/libGLESv2.%s' % - SHLIB_EXT, - 'include/GL/glext.h', - 'include/GL/gl_mangle.h', - 'include/GL/glx.h', - 'include/GL/osmesa.h', - 'include/GL/wglext.h', - 'include/GL/gl.h', - 'include/GL/glxext.h', - 'include/GL/glx_mangle.h', - 'include/GLES/gl.h', - 'include/GLES2/gl2.h', - 'include/GLES3/gl3.h'], - 'dirs': []} - -maxparallel = 1 - -moduleclass = 'vis' diff --git a/m/Mesa/Mesa-11.2.1-foss-2016a.eb b/m/Mesa/Mesa-11.2.1-foss-2016a.eb deleted file mode 100644 index da1637b8..00000000 --- a/m/Mesa/Mesa-11.2.1-foss-2016a.eb +++ /dev/null @@ -1,83 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Mesa' -version = '11.2.1' - -homepage = 'http://www.mesa3d.org/' -description = """Mesa is an open-source implementation of the OpenGL specification - - a system for rendering interactive 3D graphics.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [ - 'https://mesa.freedesktop.org/archive/%(version)s', - 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', - 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', -] - -builddependencies = [ - ('flex', '2.6.0'), - ('Bison', '3.0.4'), - ('Autotools', '20150215'), - ('pkg-config', '0.29.1'), - ('glproto', '1.4.17'), - ('kbproto', '1.0.7'), - ('libpthread-stubs', '0.3'), - ('xextproto', '7.3.0'), - ('xproto', '7.0.28'), - ('makedepend', '1.0.5'), -] - -dependencies = [ - ('libxml2', '2.9.3'), - ('libdrm', '2.4.68'), - ('libX11', '1.6.3',), - ('libXext', '1.3.3'), - ('libXfixes', '5.0.1'), - ('libXdamage', '1.1.4'), - ('libXfont', '1.5.1', '-freetype-2.6.3'), - ('LLVM', '3.8.0'), - ('eudev', '3.1.5'), -] - -# Use the os provided libudev or the EB provided eudev -#osdependencies = ['libudev'] - -# GLU is not part anymore of Mesa package! -configopts = " --disable-osmesa --enable-gallium-osmesa --enable-gallium-llvm --enable-glx --disable-dri" -configopts += " --enable-xlib-glx --disable-driglx-direct --with-gallium-drivers='swrast' --disable-egl" -configopts += " --with-osmesa-bits=32 --enable-texture-float " - -# package-config files for os dependencies are in an os specific place -#preconfigopts = 'libtoolize && PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' -preconfigopts = ' libtoolize && ' - -prebuildopts = 'env CPATH="$EBROOTLIBDRM/include/libdrm:$CPATH" ' - -sanity_check_paths = { - 'files': [ - 'lib/libGL.%s' % - SHLIB_EXT, - 'lib/libOSMesa.%s' % - SHLIB_EXT, - 'lib/libGLESv1_CM.%s' % - SHLIB_EXT, - 'lib/libGLESv2.%s' % - SHLIB_EXT, - 'include/GL/glext.h', - 'include/GL/gl_mangle.h', - 'include/GL/glx.h', - 'include/GL/osmesa.h', - 'include/GL/wglext.h', - 'include/GL/gl.h', - 'include/GL/glxext.h', - 'include/GL/glx_mangle.h', - 'include/GLES/gl.h', - 'include/GLES2/gl2.h', - 'include/GLES3/gl3.h'], - 'dirs': []} - -maxparallel = 1 - -moduleclass = 'vis' diff --git a/m/Mesa/Mesa-11.2.1-intel-2016a.eb b/m/Mesa/Mesa-11.2.1-intel-2016a.eb deleted file mode 100644 index e322cb55..00000000 --- a/m/Mesa/Mesa-11.2.1-intel-2016a.eb +++ /dev/null @@ -1,83 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Mesa' -version = '11.2.1' - -homepage = 'http://www.mesa3d.org/' -description = """Mesa is an open-source implementation of the OpenGL specification - - a system for rendering interactive 3D graphics.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [ - 'https://mesa.freedesktop.org/archive/%(version)s', - 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', - 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', -] - -builddependencies = [ - ('flex', '2.6.0'), - ('Bison', '3.0.4'), - ('Autotools', '20150215'), - ('pkg-config', '0.29.1'), - ('glproto', '1.4.17'), - ('kbproto', '1.0.7'), - ('libpthread-stubs', '0.3'), - ('xextproto', '7.3.0'), - ('xproto', '7.0.28'), - ('makedepend', '1.0.5'), -] - -dependencies = [ - ('libxml2', '2.9.3'), - ('libdrm', '2.4.68'), - ('libX11', '1.6.3',), - ('libXext', '1.3.3'), - ('libXfixes', '5.0.1'), - ('libXdamage', '1.1.4'), - ('libXfont', '1.5.1', '-freetype-2.6.3'), - ('LLVM', '3.8.0'), - ('eudev', '3.1.5'), -] - -# Use the os provided libudev or the EB provided eudev -#osdependencies = ['libudev'] - -# GLU is not part anymore of Mesa package! -configopts = " --disable-osmesa --enable-gallium-osmesa --enable-gallium-llvm --enable-glx --disable-dri" -configopts += " --enable-xlib-glx --disable-driglx-direct --with-gallium-drivers='swrast' --disable-egl" -configopts += " --with-osmesa-bits=32 --enable-texture-float " - -# package-config files for os dependencies are in an os specific place -#preconfigopts = 'libtoolize && PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' -preconfigopts = ' libtoolize && ' - -prebuildopts = 'env CPATH="$EBROOTLIBDRM/include/libdrm:$CPATH" ' - -sanity_check_paths = { - 'files': [ - 'lib/libGL.%s' % - SHLIB_EXT, - 'lib/libOSMesa.%s' % - SHLIB_EXT, - 'lib/libGLESv1_CM.%s' % - SHLIB_EXT, - 'lib/libGLESv2.%s' % - SHLIB_EXT, - 'include/GL/glext.h', - 'include/GL/gl_mangle.h', - 'include/GL/glx.h', - 'include/GL/osmesa.h', - 'include/GL/wglext.h', - 'include/GL/gl.h', - 'include/GL/glxext.h', - 'include/GL/glx_mangle.h', - 'include/GLES/gl.h', - 'include/GLES2/gl2.h', - 'include/GLES3/gl3.h'], - 'dirs': []} - -maxparallel = 1 - -moduleclass = 'vis' diff --git a/m/Mesa/Mesa-13.0.0-foss-2016a.eb b/m/Mesa/Mesa-13.0.0-foss-2016a.eb deleted file mode 100644 index 434d8ab2..00000000 --- a/m/Mesa/Mesa-13.0.0-foss-2016a.eb +++ /dev/null @@ -1,83 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Mesa' -version = '13.0.0' - -homepage = 'http://www.mesa3d.org/' -description = """Mesa is an open-source implementation of the OpenGL specification - - a system for rendering interactive 3D graphics.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [ - 'https://mesa.freedesktop.org/archive/%(version)s', - 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', - 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', -] - -builddependencies = [ - ('flex', '2.6.0'), - ('Bison', '3.0.4'), - ('Autotools', '20150215'), - ('pkg-config', '0.29.1'), - ('glproto', '1.4.17'), - ('kbproto', '1.0.7'), - ('libpthread-stubs', '0.3'), - ('xextproto', '7.3.0'), - ('xproto', '7.0.28'), - ('makedepend', '1.0.5'), -] - -dependencies = [ - ('libxml2', '2.9.3'), - ('libdrm', '2.4.68'), - ('libX11', '1.6.3',), - ('libXext', '1.3.3'), - ('libXfixes', '5.0.1'), - ('libXdamage', '1.1.4'), - ('libXfont', '1.5.1', '-freetype-2.6.3'), - ('LLVM', '3.8.0'), - ('eudev', '3.1.5'), -] - -# Use the os provided libudev or the EB provided eudev -#osdependencies = ['libudev'] - -# GLU is not part anymore of Mesa package! -configopts = " --disable-osmesa --enable-gallium-osmesa --enable-gallium-llvm --enable-glx --disable-dri" -configopts += " --enable-xlib-glx --disable-driglx-direct --with-gallium-drivers='swrast' --disable-egl" -configopts += " --with-osmesa-bits=32 --enable-texture-float " - -# package-config files for os dependencies are in an os specific place -#preconfigopts = 'libtoolize && PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' -preconfigopts = ' libtoolize && ' - -prebuildopts = 'env CPATH="$EBROOTLIBDRM/include/libdrm:$CPATH" ' - -sanity_check_paths = { - 'files': [ - 'lib/libGL.%s' % - SHLIB_EXT, - 'lib/libOSMesa.%s' % - SHLIB_EXT, - 'lib/libGLESv1_CM.%s' % - SHLIB_EXT, - 'lib/libGLESv2.%s' % - SHLIB_EXT, - 'include/GL/glext.h', - 'include/GL/gl_mangle.h', - 'include/GL/glx.h', - 'include/GL/osmesa.h', - 'include/GL/wglext.h', - 'include/GL/gl.h', - 'include/GL/glxext.h', - 'include/GL/glx_mangle.h', - 'include/GLES/gl.h', - 'include/GLES2/gl2.h', - 'include/GLES3/gl3.h'], - 'dirs': []} - -maxparallel = 1 - -moduleclass = 'vis' diff --git a/m/Mesa/Mesa-13.0.0-intel-2016a.eb b/m/Mesa/Mesa-13.0.0-intel-2016a.eb deleted file mode 100644 index 7f55e888..00000000 --- a/m/Mesa/Mesa-13.0.0-intel-2016a.eb +++ /dev/null @@ -1,65 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Mesa' -version = '13.0.0' - -homepage = 'http://www.mesa3d.org/' -description = """Mesa is an open-source implementation of the OpenGL specification - - a system for rendering interactive 3D graphics.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'optarch': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['mesa-13.0.0.tar.gz', ] - -builddependencies = [ - ('flex', '2.6.0'), - ('Bison', '3.0.4'), - ('Autotools', '20150215'), - ('pkg-config', '0.29'), - ('glproto', '1.4.17'), - ('kbproto', '1.0.7'), - ('libpthread-stubs', '0.3'), - ('xextproto', '7.3.0'), - ('xproto', '7.0.28'), - ('makedepend', '1.0.5'), -] - -dependencies = [ - ('libxml2', '2.9.3'), - ('libdrm', '2.4.67'), - ('libX11', '1.6.3',), - ('libXext', '1.3.3'), - ('libXfixes', '5.0.1'), - ('libXdamage', '1.1.4'), - ('libXfont', '1.5.1'), - ('LLVM', '3.7.1'), - ('eudev', '3.1.5'), -] - -# Use the os provided libudev or the EB provided eudev -#osdependencies = ['libudev'] - -# GLU is not part anymore of Mesa package! -configopts = " --disable-osmesa --enable-gallium-osmesa --enable-gallium-llvm --enable-glx --disable-dri" -configopts += " --enable-xlib-glx --disable-driglx-direct --with-gallium-drivers='swrast' --disable-egl" -configopts += " --with-osmesa-bits=32 --enable-texture-float " - -# package-config files for os dependencies are in an os specific place -#preconfigopts = 'libtoolize && PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' -preconfigopts = ' libtoolize && ' - -prebuildopts = 'env CPATH="$EBROOTLIBDRM/include/libdrm:$CPATH" ' - -# sanity_check_paths = { -# 'files': ['lib/libGL.%s' % SHLIB_EXT, 'lib/libOSMesa.%s' % SHLIB_EXT, 'lib/libGLESv1_CM.%s' % SHLIB_EXT, -# 'lib/libGLESv2.%s' %SHLIB_EXT, 'include/GL/glext.h', 'include/GL/gl_mangle.h', 'include/GL/glx.h', -# 'include/GL/osmesa.h', 'include/GL/wglext.h', 'include/GL/gl.h', 'include/GL/glxext.h', -# 'include/GL/glx_mangle.h', 'include/GLES/gl.h', 'include/GLES2/gl2.h', 'include/GLES3/gl3.h'], -# 'dirs': [] -#} - -maxparallel = 1 - -moduleclass = 'vis' diff --git a/m/Mesa/Mesa-7.11.2-foss-2015g-Python-2.7.9.eb b/m/Mesa/Mesa-7.11.2-foss-2015g-Python-2.7.9.eb deleted file mode 100644 index 2aa0ea66..00000000 --- a/m/Mesa/Mesa-7.11.2-foss-2015g-Python-2.7.9.eb +++ /dev/null @@ -1,69 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Mesa' -version = '7.11.2' - -homepage = 'http://www.mesa3d.org/' -description = """Mesa is an open-source implementation of the OpenGL specification - - a system for rendering interactive 3D graphics.""" - - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'optarch': True} - -sources = ['%sLib-%s.tar.gz' % (name, version)] -source_urls = [ - 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', - 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', -] - -pythonver = '2.7.9' -pythonshortver = '.'.join(pythonver.split('.')[0:2]) -versionsuffix = '-%s-%s' % ('Python', pythonver) - -dependencies = [ - ('flex', '2.5.39'), - ('Bison', '2.7'), - ('makedepend', '1.0.4'), - ('Python', pythonver), - #('libxml2', '2.9.2', versionsuffix), - ('libxml2', '2.9.2'), - ('glproto', '1.4.16'), - ('libdrm', '2.4.27') -] - -osdependencies = [ - 'libX11-devel', # Xlibs.h - 'xorg-x11-proto-devel', # X.h, glproto, xproto - 'libXdamage-devel', - 'libXext-devel', - 'libXfixes-devel', -] - -configopts = " --disable-osmesa --enable-glu --disable-gallium-llvm --disable-gallium-gbm --enable-glx --with-driver=xlib" -configopts += " --disable-driglx-direct --with-gallium-drivers='' --without-demos --disable-egl""" - -# package-config files for os dependencies are in an os specific place -preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' - -prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' - -sanity_check_paths = { - 'files': [ - 'lib/libGL.so', - 'lib/libGLU.so', - 'include/GL/glext.h', - 'include/GL/gl_mangle.h', - 'include/GL/glu_mangle.h', - 'include/GL/glx.h', - 'include/GL/osmesa.h', - 'include/GL/wglext.h', - 'include/GL/gl.h', - 'include/GL/glu.h', - 'include/GL/glxext.h', - 'include/GL/glx_mangle.h', - 'include/GL/vms_x_fix.h', - 'include/GL/wmesa.h'], - 'dirs': []} - -moduleclass = 'vis' diff --git a/m/Metal/Metal-2011-03-25-foss-2016a.eb b/m/Metal/Metal-2011-03-25-foss-2016a.eb deleted file mode 100644 index f760f589..00000000 --- a/m/Metal/Metal-2011-03-25-foss-2016a.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Metal' -version = '2011-03-25' - -homepage = 'http://csg.sph.umich.edu/abecasis/Metal/' -description = """ -Metal - Meta Analysis Helper -The METAL software is designed to facilitate meta-analysis of large datasets (such as several whole genome scans) in a - convenient, rapid and memory efficient manner. -""" - -sources = ['generic-%(namelower)s-%(version)s.tar.gz'] -source_urls = ['http://csg.sph.umich.edu/abecasis/Metal/download/'] - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'pic': True} - -patches = ['Metal-%(version)s_Makefile.patch'] - -skipsteps = ['configure'] - -buildopts = 'all' - -installopts = 'INSTALLDIR=%(installdir)s/bin' - -sanity_check_paths = { - 'files': ['bin/metal'], - 'dirs': [''], -} - -moduleclass = 'bio' diff --git a/m/Molpro/Molpro-2012.1.27-intel-2015a.eb b/m/Molpro/Molpro-2012.1.27-intel-2015a.eb deleted file mode 100644 index 519d0887..00000000 --- a/m/Molpro/Molpro-2012.1.27-intel-2015a.eb +++ /dev/null @@ -1,17 +0,0 @@ -name = 'Molpro' -version = '2012.1.27' - -homepage = 'https://www.molpro.net' -description = """Molpro is a complete system of ab initio programs for molecular electronic structure calculations.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'usempi': True} - -# no source URL available, requires registration to download -sources = ['%(namelower)s.%(version)s.tar.gz'] - -# license file -import os -license_file = os.path.join(os.getenv('HOME'), 'licenses', name, 'license.lic') - -moduleclass = 'chem' diff --git a/m/Mono/Mono-2.10.6-intel-2016b.eb b/m/Mono/Mono-2.10.6-intel-2016b.eb deleted file mode 100644 index 901f185e..00000000 --- a/m/Mono/Mono-2.10.6-intel-2016b.eb +++ /dev/null @@ -1,29 +0,0 @@ -name = 'Mono' -version = '2.10.6' - -homepage = 'http://mono-framework.com' -description = """An open source, cross-platform, implementation of C# and the CLR that is - binary compatible with Microsoft.NET.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -# Mono required Mono to build, so there are a couple of options: -# 1) provide Mono RPMs in sources, the Mono easyblock will use them to make a tmp Mono install -# 2) assume a Mono version is available system-wide (assert using e.g. "osdependencies = ['mono-core']") -# 3) specify an already available Mono module as build dep, e.g. -# "builddependencies = [('Mono', '2.10.6')] - -source_urls = ['http://download.mono-project.com/sources/mono/'] -sources = [ - SOURCELOWER_TAR_BZ2, - # Mono requires Mono to build, so provide RPMs so Mono can be bootstrapped - 'libgdiplus-2.4.2-2.el5.kb.x86_64.rpm', - 'mono-core-2.4.2.3-2.el5.kb.x86_64.rpm', -] - -builddependencies = [ - ('Bison', '3.0.4'), - ('gettext', '0.19.8'), -] - -moduleclass = 'lang' diff --git a/m/Mono/Mono-4.2.2.10-intel-2016.01.eb b/m/Mono/Mono-4.2.2.10-intel-2016.01.eb deleted file mode 100644 index 69499935..00000000 --- a/m/Mono/Mono-4.2.2.10-intel-2016.01.eb +++ /dev/null @@ -1,19 +0,0 @@ -name = 'Mono' -version = '4.2.2.10' - -easyblock = 'ConfigureMake' - -homepage = 'http://www.mono-project.com' -description = """Mono is an open source implementation of Microsoft's .NET Framework based on the ECMA standards -for C# and the Common Language Runtime.""" - -toolchain = {'name': 'intel', 'version': '2016.01'} - -dependencies = [('libgdiplus', '3.12')] - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = ['http://download.mono-project.com/sources/%(namelower)s'] - -maxparallel = 4 - -moduleclass = 'lang' diff --git a/m/Mono/Mono-4.6.2.7-intel-2016b.eb b/m/Mono/Mono-4.6.2.7-intel-2016b.eb deleted file mode 100644 index 11e5afa9..00000000 --- a/m/Mono/Mono-4.6.2.7-intel-2016b.eb +++ /dev/null @@ -1,21 +0,0 @@ -name = 'Mono' -version = '4.6.2.7' - -homepage = 'http://mono-framework.com' -description = """An open source, cross-platform, implementation of C# and the CLR that is - binary compatible with Microsoft.NET.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = ['http://download.mono-project.com/sources/mono/'] -sources = [SOURCELOWER_TAR_BZ2] - -builddependencies = [ - ('Autotools', '20150215'), - ('Bison', '3.0.4'), - ('gettext', '0.19.8'), -] - -configopts = "--with-large-heap=yes" - -moduleclass = 'lang' diff --git a/m/MrBayes/MrBayes-3.2.5-intel-2015a.eb b/m/MrBayes/MrBayes-3.2.5-intel-2015a.eb deleted file mode 100644 index f103e762..00000000 --- a/m/MrBayes/MrBayes-3.2.5-intel-2015a.eb +++ /dev/null @@ -1,19 +0,0 @@ -name = 'MrBayes' -version = '3.2.5' - -homepage = 'http://mrbayes.csit.fsu.edu' -description = "MrBayes is a program for the Bayesian estimation of phylogeny." - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'optarch': True, 'usempi': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [ - "http://downloads.sourceforge.net/project/mrbayes/mrbayes/%(version)s"] - -dependencies = [ - ('beagle-lib', '20141202'), - ('libreadline', '6.3'), -] - -moduleclass = 'bio' diff --git a/m/make/make-3.82-intel-2015b.eb b/m/make/make-3.82-intel-2015b.eb deleted file mode 100644 index 7bc6be59..00000000 --- a/m/make/make-3.82-intel-2015b.eb +++ /dev/null @@ -1,32 +0,0 @@ -## -# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'make' -version = '3.82' - -homepage = 'http://www.gnu.org/software/make/make.html' -description = "make-3.82: GNU version of make utility" - -# fi. http://ftp.gnu.org/gnu/make/make-3.82.tar.gz -sources = ['make-%(version)s.tar.bz2'] -source_urls = [GNU_SOURCE] - -toolchain = {'name': 'intel', 'version': '2015b'} - -sanity_check_paths = { - 'files': ['bin/make'], - 'dirs': [] -} - -moduleclass = 'devel' diff --git a/m/makedepend/makedepend-1.0.5-foss-2016a.eb b/m/makedepend/makedepend-1.0.5-foss-2016a.eb deleted file mode 100644 index c4a3658b..00000000 --- a/m/makedepend/makedepend-1.0.5-foss-2016a.eb +++ /dev/null @@ -1,24 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'makedepend' -version = '1.0.5' - -homepage = "http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html" -description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_UTIL_SOURCE] - -builddependencies = [ - ('xproto', '7.0.28'), -] - -sanity_check_paths = { - 'files': ['bin/makedepend'], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/m/makedepend/makedepend-1.0.5-intel-2016a.eb b/m/makedepend/makedepend-1.0.5-intel-2016a.eb deleted file mode 100644 index 943da96f..00000000 --- a/m/makedepend/makedepend-1.0.5-intel-2016a.eb +++ /dev/null @@ -1,24 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'makedepend' -version = '1.0.5' - -homepage = "http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html" -description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_UTIL_SOURCE] - -builddependencies = [ - ('xproto', '7.0.28'), -] - -sanity_check_paths = { - 'files': ['bin/makedepend'], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/m/matplotlib/matplotlib-1.4.3-intel-2015b-Python-2.7.9.eb b/m/matplotlib/matplotlib-1.4.3-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index ff70015f..00000000 --- a/m/matplotlib/matplotlib-1.4.3-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,37 +0,0 @@ -easyblock = "PythonPackage" - -name = 'matplotlib' -version = '1.4.3' - -homepage = 'http://matplotlib.org' -description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of - hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python - and ipython shell, web application servers, and six graphical user interface toolkits.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -patches = [('matplotlib-%(version)s_Qhull-intel-fix.patch')] - -python = "Python" -pythonversion = '2.7.9' -pyshortver = ".".join(pythonversion.split(".")[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - -dependencies = [ - (python, pythonversion), - ('freetype', '2.5.5'), - ('libpng', '1.6.16'), -] - -pyprefix = 'lib/python%s/site-packages' % pyshortver -eggname = 'matplotlib-%%(version)s-py%s-linux-x86_64.egg' % pyshortver -sanity_check_paths = { - 'files': [], - 'dirs': [('%s/%%(name)s' % pyprefix, '%s/%s' % (pyprefix, eggname))], -} - -moduleclass = 'vis' diff --git a/m/motif/motif-2.3.4-foss-2015g-libX11-1.6.2.eb b/m/motif/motif-2.3.4-foss-2015g-libX11-1.6.2.eb deleted file mode 100644 index be4a6be8..00000000 --- a/m/motif/motif-2.3.4-foss-2015g-libX11-1.6.2.eb +++ /dev/null @@ -1,59 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'motif' -version = '2.3.4' - -homepage = 'http://motif.ics.com/' -description = """Motif refers to both a graphical user interface (GUI) specification and the widget toolkit for building - applications that follow that specification under the X Window System on Unix and other POSIX-compliant systems. - It was the standard toolkit for the Common Desktop Environment and thus for Unix.""" - -toolchain = {'name': 'foss', 'version': '2015g'} -# use -O1 to dance around icc segfaulting -toolchainopts = {'lowopt': True} - -sources = ['%(name)s-%(version)s-src.tgz'] -source_urls = [SOURCEFORGE_SOURCE] - -libx11ver = '1.6.2' -versionsuffix = '-libX11-%s' % libx11ver -dependencies = [ - ('libXt', '1.1.4', versionsuffix), - ('libXau', '1.0.8'), - ('libX11', libx11ver, '-Python-2.7.9'), - ('libXext', '1.3.3'), - ('libXdmcp', '1.1.2'), - ('libpng', '1.6.12'), - ('xbitmaps', '1.1.1'), - ('freetype', '2.5.3'), - ('libjpeg-turbo', '1.4.0'), - ('bzip2', '1.0.6'), -] -builddependencies = [ - ('Autotools', '20150215', '', ('GNU', '4.9.3-2.25')), - ('flex', '2.5.39'), - ('Bison', '3.0.2'), - ('util-linux', '2.26.1'), -] - -preconfigopts = "./autogen.sh && " - -# makefile is not parallel safe -parallel = 1 - -sanity_check_paths = { - 'files': [ - 'lib/libMrm.a', - 'lib/libUil.a', - 'lib/libXm.a', - 'bin/mwm', - 'bin/uil', - 'bin/xmbind'], - 'dirs': [ - 'include/Mrm', - 'include/uil', - 'include/X11', - 'include/Xm'], -} - -moduleclass = 'vis' diff --git a/m/motif/motif-2.3.4-intel-2015b-libX11-1.6.2.eb b/m/motif/motif-2.3.4-intel-2015b-libX11-1.6.2.eb deleted file mode 100644 index 41863319..00000000 --- a/m/motif/motif-2.3.4-intel-2015b-libX11-1.6.2.eb +++ /dev/null @@ -1,59 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'motif' -version = '2.3.4' - -homepage = 'http://motif.ics.com/' -description = """Motif refers to both a graphical user interface (GUI) specification and the widget toolkit for building - applications that follow that specification under the X Window System on Unix and other POSIX-compliant systems. - It was the standard toolkit for the Common Desktop Environment and thus for Unix.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -# use -O1 to dance around icc segfaulting -toolchainopts = {'lowopt': True} - -sources = ['%(name)s-%(version)s-src.tgz'] -source_urls = [SOURCEFORGE_SOURCE] - -libx11ver = '1.6.2' -versionsuffix = '-libX11-%s' % libx11ver -dependencies = [ - ('libXt', '1.1.4', versionsuffix), - ('libXau', '1.0.8'), - ('libX11', libx11ver, '-Python-2.7.9'), - ('libXext', '1.3.3'), - ('libXdmcp', '1.1.2'), - ('libpng', '1.6.12'), - ('xbitmaps', '1.1.1'), - ('freetype', '2.5.3'), - ('libjpeg-turbo', '1.4.0'), - ('bzip2', '1.0.6'), -] -builddependencies = [ - ('Autotools', '20150215', '', ('GNU', '5.1.0-2.25')), - ('flex', '2.5.39'), - ('Bison', '3.0.2'), - ('util-linux', '2.26.1', '', True), -] - -preconfigopts = "./autogen.sh && " - -# makefile is not parallel safe -parallel = 1 - -sanity_check_paths = { - 'files': [ - 'lib/libMrm.a', - 'lib/libUil.a', - 'lib/libXm.a', - 'bin/mwm', - 'bin/uil', - 'bin/xmbind'], - 'dirs': [ - 'include/Mrm', - 'include/uil', - 'include/X11', - 'include/Xm'], -} - -moduleclass = 'vis' diff --git a/m/mutil/mutil-1.822.3-intel-2016a.eb b/m/mutil/mutil-1.822.3-intel-2016a.eb deleted file mode 100644 index 8f689fbc..00000000 --- a/m/mutil/mutil-1.822.3-intel-2016a.eb +++ /dev/null @@ -1,37 +0,0 @@ -name = 'mutil' -coreutils_maj = '8' -coreutils_min = '22' -version = '1.%s%s.3' % (coreutils_maj, coreutils_min) - -homepage = 'http://people.nas.nasa.gov/~kolano/projects/mutil.html' -description = """Mutil is a set of standard utilities that have been parallelized to maximize performance on -modern file systems. These currently include multi-threaded drop-in replacements for cp and md5sum from -GNU coreutils, which have achieved 10/30x rates on one/many nodes. -""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [ - "coreutils-%s.%s.tar.xz" % (coreutils_maj, coreutils_min), # must be first - SOURCE_TGZ, -] -source_urls = [ - SOURCEFORGE_SOURCE, - 'http://ftpmirror.gnu.org/coreutils', -] - -dependencies = [ - ('gnutls', '3.3.21'), - ('libgpg-error', '1.21'), - ('libgcrypt', '1.6.5'), -] - -# needs 1.14 to work -builddependencies = [('Automake', '1.14')] - -sanity_check_paths = { - 'files': ['bin/mcp', 'bin/msum'], - 'dirs': ['man/man1'] -} - -moduleclass = 'tools' diff --git a/n/NASM/NASM-2.11.05-intel-2015b.eb b/n/NASM/NASM-2.11.05-intel-2015b.eb deleted file mode 100644 index dd6c9a8d..00000000 --- a/n/NASM/NASM-2.11.05-intel-2015b.eb +++ /dev/null @@ -1,30 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html -## -easyblock = 'ConfigureMake' - -name = 'NASM' -version = '2.11.05' - -homepage = 'http://www.nasm.us/' -description = """NASM: General-purpose x86 assembler""" - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] - -toolchain = {'name': 'intel', 'version': '2015b'} - -sanity_check_paths = { - 'files': ['bin/nasm'], - 'dirs': [], -} - -moduleclass = 'lang' diff --git a/n/NodeJS/NodeJS-6.10.1-foss-2016a.eb b/n/NodeJS/NodeJS-6.10.1-foss-2016a.eb deleted file mode 100644 index 664fe1af..00000000 --- a/n/NodeJS/NodeJS-6.10.1-foss-2016a.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'NodeJS' -version = '6.10.1' - -homepage = 'http://nodejs.org' - -description = """Node.js is a platform built on Chrome's JavaScript runtime - for easily building fast, scalable network applications. Node.js uses an - event-driven, non-blocking I/O model that makes it lightweight and efficient, - perfect for data-intensive real-time applications that run across distributed devices.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://nodejs.org/dist/v%(version)s/'] -sources = ['node-v%(version)s.tar.gz'] - -builddependencies = [('Python', '2.7.11')] - -sanity_check_paths = { - 'files': ["bin/node", "bin/npm"], - 'dirs': ["lib/node_modules", "include/node"] -} - -moduleclass = 'lang' diff --git a/n/netCDF/netCDF-4.3.2-intel-2015b.eb b/n/netCDF/netCDF-4.3.2-intel-2015b.eb deleted file mode 100644 index 4c9bd2b6..00000000 --- a/n/netCDF/netCDF-4.3.2-intel-2015b.eb +++ /dev/null @@ -1,36 +0,0 @@ -name = 'netCDF' -version = '4.3.2' - -homepage = 'http://www.unidata.ucar.edu/software/netcdf/' -description = """NetCDF (network Common Data Form) is a set of software libraries - and machine-independent data formats that support the creation, access, and sharing of array-oriented - scientific data.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True, 'usempi': True} - -sources = ['v%(version)s.tar.gz'] -source_urls = ['https://github.com/Unidata/netcdf-c/archive'] - -patches = [ - 'netCDF-4.3.2-with-HDF-1.8.13.patch', - 'netCDF-4.3.2-parallel-HDF.patch', -] - -dependencies = [('HDF5', '1.8.13')] - -builddependencies = [ - ('CMake', '3.4.1'), - ('Doxygen', '1.8.10'), - ('cURL', '7.43.0'), -] - -# make sure both static and shared libs are built -configopts = [ - "-DCURL_LIBRARY=$EBROOTCURL/lib/libcurl.%s -DCURL_INCLUDE_DIR=$EBROOTCURL/include -DBUILD_SHARED_LIBS=ON" % - SHLIB_EXT, - "-DCURL_LIBRARY=$EBROOTCURL/lib/libcurl.%s -DCURL_INCLUDE_DIR=$EBROOTCURL/include -DBUILD_SHARED_LIBS=OFF" % - SHLIB_EXT, -] - -moduleclass = 'data' diff --git a/n/networkx/networkx-1.11-foss-2016a-Python-3.5.1.eb b/n/networkx/networkx-1.11-foss-2016a-Python-3.5.1.eb deleted file mode 100644 index 162c5870..00000000 --- a/n/networkx/networkx-1.11-foss-2016a-Python-3.5.1.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'networkx' -version = '1.11' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://pypi.python.org/pypi/networkx' -description = """NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, - and functions of complex networks.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [PYPI_SOURCE] -sources = [SOURCE_TAR_GZ] - -dependencies = [ - ('Python', '3.5.1'), -] - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages/'], -} - -moduleclass = 'tools' diff --git a/n/numpy/numpy-1.8.2-intel-2015b-Python-2.7.9.eb b/n/numpy/numpy-1.8.2-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index 22f848f4..00000000 --- a/n/numpy/numpy-1.8.2-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,26 +0,0 @@ -name = 'numpy' -version = '1.8.2' - -homepage = 'http://www.numpy.org' -description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: - a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran - code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, - NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be - defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCE_TAR_GZ] - -patches = ['numpy-1.8.1-mkl.patch'] - -python = 'Python' -pyver = '2.7.9' -versionsuffix = '-%s-%s' % (python, pyver) - -dependencies = [ - (python, pyver), -] - -moduleclass = 'math' diff --git a/n/numpy/numpy-1.9.1-intel-2015b-Python-2.7.9.eb b/n/numpy/numpy-1.9.1-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index 1e7b3dd7..00000000 --- a/n/numpy/numpy-1.9.1-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,26 +0,0 @@ -name = 'numpy' -version = '1.9.1' - -homepage = 'http://www.numpy.org' -description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: - a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran - code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, - NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be - defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCE_TAR_GZ] - -patches = ['numpy-1.8.1-mkl.patch'] - -python = 'Python' -pyver = '2.7.9' -versionsuffix = '-%s-%s' % (python, pyver) - -dependencies = [ - (python, pyver), -] - -moduleclass = 'math' diff --git a/n/numpy/numpy-1.9.2-intel-2015b-Python-3.4.3.eb b/n/numpy/numpy-1.9.2-intel-2015b-Python-3.4.3.eb deleted file mode 100644 index 0c2696a1..00000000 --- a/n/numpy/numpy-1.9.2-intel-2015b-Python-3.4.3.eb +++ /dev/null @@ -1,27 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-08-26_17-07-32 -name = 'numpy' -version = '1.9.2' - -homepage = 'http://www.numpy.org' -description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: - a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran - code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, - NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be - defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCE_TAR_GZ] - -patches = ['numpy-1.8.0-mkl.patch'] - -python = 'Python' -pyver = '3.4.3' -versionsuffix = '-%s-%s' % (python, pyver) - -dependencies = [ - (python, pyver), -] - -moduleclass = 'math' diff --git a/n/numpy/numpy-1.9.2-intel-2016b-Python-2.7.12.eb b/n/numpy/numpy-1.9.2-intel-2016b-Python-2.7.12.eb deleted file mode 100644 index 359a7826..00000000 --- a/n/numpy/numpy-1.9.2-intel-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,32 +0,0 @@ -name = 'numpy' -version = '1.9.2' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.numpy.org' -description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: - a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran - code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, - NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be - defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCE_TAR_GZ] - -patches = ['numpy-1.8.0-mkl.patch'] - -dependencies = [ - ('Python', '2.7.12'), -] - -# need to use pip rather than regular 'setup.py install,' -# to ensure that this numpy wins over the one in the Python installation; -# using easy_install does not work... -use_pip = True - -# install as zipped egg to get a .pth file in lib/python*/site-packages; -# this enables shadowing of the numpy that is part of the Python installation -zipped_egg = True - -moduleclass = 'math' diff --git a/o/OBITools/OBITools-1.2.9-foss-2016a-Python-2.7.11.eb b/o/OBITools/OBITools-1.2.9-foss-2016a-Python-2.7.11.eb deleted file mode 100644 index 8915f6b0..00000000 --- a/o/OBITools/OBITools-1.2.9-foss-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,43 +0,0 @@ -easyblock = "PythonPackage" - -name = 'OBITools' -version = '1.2.9' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.grenoble.prabi.fr/trac/OBITools' -description = """ The OBITools programs aims to help you to manipulate various data and sequence files in a convenient way using - the Unix command line interface. They follow the standard Unix interface for command line program, allowing to chain a set of - commands using the pipe mecanism. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [PYPI_SOURCE] -sources = [SOURCE_TAR_GZ] - - -dependencies = [ - ('Python', '2.7.11'), - ('Cython', '0.24.1', versionsuffix), - ('wheel', '0.29.0', versionsuffix), - ('IPython', '5.0.0', versionsuffix), - ('Sphinx', '1.4.8', versionsuffix) -] - -options = {'modulename': 'obitools'} - -sanity_check_paths = { - 'files': [ - "bin/%s" % - binfile for binfile in [ - 'ali2consensus', - 'ecotag', - 'obiaddtaxids', - 'obicount', - 'obistat']], - 'dirs': [ - 'bin', - 'lib/python%(pyshortver)s/site-packages/obitools'], -} - -moduleclass = 'math' diff --git a/o/OPARI2/OPARI2-1.1.4-intel-2015b.eb b/o/OPARI2/OPARI2-1.1.4-intel-2015b.eb deleted file mode 100644 index 4aeafc4f..00000000 --- a/o/OPARI2/OPARI2-1.1.4-intel-2015b.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'ConfigureMake' - -name = "OPARI2" -version = "1.1.4" - -homepage = 'http://www.score-p.org' -description = """OPARI2, the successor of Forschungszentrum Juelich's OPARI, - is a source-to-source instrumentation tool for OpenMP and hybrid codes. - It surrounds OpenMP directives and runtime library calls with calls to - the POMP2 measurement interface.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -# http://www.vi-hps.org/upload/packages/opari2/opari2-1.1.1.tar.gz -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://www.vi-hps.org/upload/packages/opari2/'] - -configopts = "--with-compiler-suite=intel " - -sanity_check_paths = { - 'files': ["bin/opari2", "include/opari2/pomp2_lib.h"], - 'dirs': [], -} - -moduleclass = 'perf' diff --git a/o/Octave/Octave-3.8.2-foss-2015g.eb b/o/Octave/Octave-3.8.2-foss-2015g.eb deleted file mode 100644 index c593facb..00000000 --- a/o/Octave/Octave-3.8.2-foss-2015g.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Octave' -version = '3.8.2' - -homepage = 'http://www.gnu.org/software/octave/' -description = """GNU Octave is a high-level interpreted language, primarily intended for numerical computations.""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = [GNU_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [ - ('PCRE', '8.37'), - ('ncurses', '5.9'), - ('libreadline', '6.3'), -] - -configopts = '--with-blas="$LIBBLAS"' - -sanity_check_paths = { - 'files': ['bin/octave'], - 'dirs': [] -} - -sanity_check_commands = [('octave', '--eval "1+2"')] - -moduleclass = 'math' diff --git a/o/Octave/Octave-3.8.2-intel-2015b.eb b/o/Octave/Octave-3.8.2-intel-2015b.eb deleted file mode 100644 index 6dcd6606..00000000 --- a/o/Octave/Octave-3.8.2-intel-2015b.eb +++ /dev/null @@ -1,43 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Octave' -version = '3.8.2' - -homepage = 'http://www.gnu.org/software/octave/' -description = """GNU Octave is a high-level interpreted language, primarily intended for numerical computations.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = [GNU_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -patches = ['Octave-%(version)s_intel.patch'] - -osdependencies = ['gnuplot', 'texinfo-tex', 'texlive-dvips'] - -dependencies = [ - ('PCRE', '8.38'), - ('ncurses', '5.9'), - ('libreadline', '6.3'), -] - -configopts = '--with-blas="-lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lpthread -lm" ' -configopts += '--with-lapack="-lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lpthread -lm" ' -configopts += '--without-umfpack --without-cxsparse --without-colamd --without-ccolamd --without-qrupdate ' -configopts += '--without-camd --without-amd --without-arpack --without-qhull' - -# Because of missing man pages (non-standard location) -postinstallcmds = [ - 'mkdir -p %(installdir)s/share/man/man1', - 'cp doc/interpreter/*.1 %(installdir)s/share/man/man1' -] -modextrapaths = {'MANPATH': 'share/man'} - -sanity_check_paths = { - 'files': ['bin/octave'], - 'dirs': [] -} - -sanity_check_commands = [('octave', '--eval "1+2"')] - -moduleclass = 'math' diff --git a/o/Octave/Octave-4.0.1-intel-2016.01.eb b/o/Octave/Octave-4.0.1-intel-2016.01.eb deleted file mode 100644 index 52d9e416..00000000 --- a/o/Octave/Octave-4.0.1-intel-2016.01.eb +++ /dev/null @@ -1,42 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-06-30_13-50-57 -easyblock = 'ConfigureMake' - -name = 'Octave' -version = '4.0.1' - -homepage = 'http://www.gnu.org/software/octave/' -description = """GNU Octave is a high-level interpreted language, primarily intended for numerical computations.""" - -toolchain = {'name': 'intel', 'version': '2016.01'} - -source_urls = [GNU_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -osdependencies = ['gnuplot', 'texinfo-tex', 'texlive-dvips'] - -dependencies = [ - ('PCRE', '8.36'), - ('ncurses', '5.9'), - ('libreadline', '6.3'), -] - -configopts = '--with-blas="-lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lpthread -lm" ' -configopts += '--with-lapack="-lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lpthread -lm" ' -configopts += '--without-umfpack --without-cxsparse --without-colamd --without-ccolamd --without-qrupdate ' -configopts += '--without-camd --without-amd --without-arpack --without-qhull' - -# Because of missing man pages (non-standard location) -postinstallcmds = [ - 'mkdir -p %(installdir)s/share/man/man1', - 'cp doc/interpreter/*.1 %(installdir)s/share/man/man1' -] -modextrapaths = {'MANPATH': 'share/man'} - -sanity_check_paths = { - 'files': ['bin/octave'], - 'dirs': [] -} - -sanity_check_commands = [('octave', '--eval "1+2"')] - -moduleclass = 'math' diff --git a/o/Octopus/Octopus-5.0.0-intel-2015b-mpi.eb b/o/Octopus/Octopus-5.0.0-intel-2015b-mpi.eb deleted file mode 100644 index aff641f4..00000000 --- a/o/Octopus/Octopus-5.0.0-intel-2015b-mpi.eb +++ /dev/null @@ -1,52 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Octopus' -version = '5.0.0' -versionsuffix = '-mpi' - -homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Main_Page' -description = """Octopus is a scientific program aimed at the ab initio virtual experimentation -on a hopefully ever-increasing range of system types. Electrons are described quantum-mechanically -within density-functional theory (DFT), in its time-dependent form (TDDFT) when doing simulations -in time. Nuclei are described classically as point particles. -Electron-nucleus interaction is described within the pseudopotential approximation.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'usempi': True, 'opt': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [ - 'http://www.tddft.org/programs/octopus/down.php?file=%(version)s/'] - -builddependencies = [ - ('Bison', '3.0.4'), - ('Perl', '5.20.2', '-bare'), -] - -dependencies = [ - ('libxc', '2.2.2'), - ('netCDF', '4.3.3.1'), - ('netCDF-Fortran', '4.4.2'), - ('FFTW', '3.3.4', '-PFFT-20150905'), - ('PFFT', '1.0.8-alpha'), - ('ETSF_IO', '1.0.4'), - ('GSL', '1.16'), -] - -configopts = '--disable-openmp --enable-mpi --enable-newuoa --disable-python --disable-gdlib ' -configopts += '--with-libxc-prefix=$EBROOTLIBXC --with-gsl-prefix=$EBROOTGSL ' -configopts += '--with-blas="-L$BLAS_LIB_DIR $LIBBLAS" ' -configopts += '--with-blacs="$MKLROOT/lib/intel64/libmkl_blacs_intelmpi_lp64.a" ' -configopts += '--with-scalapack="$MKLROOT/lib/intel64/libmkl_scalapack_lp64.a" ' -configopts += '--with-netcdf-prefix=$EBROOTNETCDFMINFORTRAN ' -configopts += '--with-etsf-io-prefix=$EBROOTETSF_IO ' -configopts += '--with-pfft-prefix=$EBROOTPFFT --with-mpifftw-prefix=$EBROOTFFTW ' - -runtest = 'MPIEXEC=`which mpirun` check' - -sanity_check_paths = { - 'files': ["bin/octopus_mpi"], - 'dirs': [] -} - -moduleclass = 'chem' diff --git a/o/OpenCV/OpenCV-3.0.0-intel-2015b.eb b/o/OpenCV/OpenCV-3.0.0-intel-2015b.eb deleted file mode 100644 index c8413c0f..00000000 --- a/o/OpenCV/OpenCV-3.0.0-intel-2015b.eb +++ /dev/null @@ -1,79 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'OpenCV' -version = '3.0.0' - -homepage = 'http://opencv.org/' -description = """OpenCV (Open Source Computer Vision Library) is an open source computer vision - and machine learning software library. OpenCV was built to provide - a common infrastructure for computer vision applications and to accelerate - the use of machine perception in the commercial products.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'opt': True, 'optarch': True} - -sources = [SOURCELOWER_ZIP] -source_urls = [ - ('http://sourceforge.net/projects/opencvlibrary/files/opencv-unix/%(version)s', - 'download')] - -patches = ['OpenCV-%(version)s_with_IPP.patch'] - -osdependencies = ['gtk2-devel'] - -builddependencies = [ - ('CMake', '3.0.0'), -] - -python = 'Python' -pythonver = '2.7.8' -pythonshortver = '.'.join(pythonver.split('.')[0:2]) -java = 'Java' -javaver = '1.7.0_79' - -dependencies = [ - (python, pythonver), - ('zlib', '1.2.8'), - ('ffmpeg', '2.4'), - ('libjpeg-turbo', '1.4.0'), - ('libpng', '1.6.12'), - ('LibTIFF', '4.0.3'), - ('JasPer', '1.900.1'), - (java, javaver, '', True), - ('ant', '1.9.3', '-%s-%s' % (java, javaver), True), - ('GLib', '2.40.0') -] - -preconfigopts = 'export IPPROOT=$EBROOTICC/ipp && ' - -configopts = '-DCMAKE_BUILD_TYPE=RELEASE ' -configopts += '-DBUILD_PYTHON_SUPPORT=ON ' -configopts += '-DPYTHON_PACKAGES_PATH=$EBROOTPYTHON/lib/python%s/site-packages ' % pythonshortver -configopts += '-DBUILD_NEW_PYTHON_SUPPORT=ON ' -configopts += '-DZLIB_LIBRARY=$EBROOTZLIB/lib/libz.so ' -configopts += '-DZLIB_INCLUDE_DIR=$EBROOTZLIB/include ' -configopts += '-DTIFF_LIBRARY=$EBROOTLIBTIFF/lib/libtiff.so ' -configopts += '-DTIFF_INCLUDE_DIR=$EBROOTLIBTIFF/include ' -configopts += '-DPNG_LIBRARY=$EBROOTLIBPNG/lib/libpng.so ' -configopts += '-DPNG_INCLUDE_DIR=$EBROOTLIBPNG/include ' -configopts += '-DJPEG_LIBRARY=$EBROOTLIBJPEGMINTURBO/lib/libjpeg.so ' -configopts += '-DJPEG_INCLUDE_DIR=$EBROOTLIBJPEGMINTURBO/include ' -configopts += '-DJASPER_LIBRARY=$EBROOTJASPER/lib/libjasper.a ' -configopts += '-DJASPER_INCLUDE_DIR=$EBROOTJASPER/include ' -configopts += '-DWITH_IPP=ON ' -configopts += '-DENABLE_SSE=ON -DENABLE_SSE2=ON -DENABLE_SSE3=ON ' -configopts += '-DENABLE_AVX=ON -DENABLE_AVX2=ON -DENABLE_FMA3=ON -DENABLE_SSE41=ON -DENABLE_SSE42=ON ' -configopts += '-DWITH_CUDA=OFF ' - -sanity_check_paths = { - 'files': ['lib/libopencv_core.so'] + - ['bin/opencv_%s' % x for x in ['createsamples', 'traincascade']], - 'dirs': ['include'] -} - -modextrapaths = { - 'PYTHONPATH': 'lib/python%s/site-packages' % pythonshortver, - 'CLASSPATH': 'share/OpenCV/java', -} - -moduleclass = 'vis' diff --git a/o/OpenCV/OpenCV-3.1.0-intel-2016a.eb b/o/OpenCV/OpenCV-3.1.0-intel-2016a.eb deleted file mode 100644 index f13f985a..00000000 --- a/o/OpenCV/OpenCV-3.1.0-intel-2016a.eb +++ /dev/null @@ -1,72 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'OpenCV' -version = '3.1.0' - -homepage = 'http://opencv.org/' -description = """OpenCV (Open Source Computer Vision Library) is an open source computer vision - and machine learning software library. OpenCV was built to provide - a common infrastructure for computer vision applications and to accelerate - the use of machine perception in the commercial products.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['https://github.com/Itseez/opencv/archive/'] -sources = ['%(version)s.zip'] - -patches = ['OpenCV-%(version)s_with_IPP.patch'] - -builddependencies = [ - ('CMake', '3.5.2'), -] - -dependencies = [ - ('Python', '2.7.11'), - ('zlib', '1.2.8'), - ('FFmpeg', '3.0.2'), - ('libjpeg-turbo', '1.4.2', '-NASM-2.12.01'), - ('libpng', '1.6.21'), - ('LibTIFF', '4.0.6'), - ('JasPer', '1.900.1'), - ('Java', '1.8.0_92', '', True), - ('ant', '1.9.7', '-Java-%(javaver)s', True), - ('GLib', '2.48.0'), - ('GTK+', '2.24.30'), -] - -preconfigopts = 'export IPPROOT=$EBROOTICC/ipp && ' - -configopts = '-DCMAKE_BUILD_TYPE=RELEASE ' -configopts += '-DBUILD_PYTHON_SUPPORT=ON ' -configopts += '-DPYTHON_PACKAGES_PATH=%(installdir)s/lib/python%(pyshortver)s/site-packages ' -configopts += '-DBUILD_NEW_PYTHON_SUPPORT=ON ' -configopts += '-DZLIB_LIBRARY=$EBROOTZLIB/lib/libz.%s ' % SHLIB_EXT -configopts += '-DZLIB_INCLUDE_DIR=$EBROOTZLIB/include ' -configopts += '-DTIFF_LIBRARY=$EBROOTLIBTIFF/lib/libtiff.%s ' % SHLIB_EXT -configopts += '-DTIFF_INCLUDE_DIR=$EBROOTLIBTIFF/include ' -configopts += '-DPNG_LIBRARY=$EBROOTLIBPNG/lib/libpng.%s ' % SHLIB_EXT -configopts += '-DPNG_INCLUDE_DIR=$EBROOTLIBPNG/include ' -configopts += '-DJPEG_LIBRARY=$EBROOTLIBJPEGMINTURBO/lib/libjpeg.%s ' % SHLIB_EXT -configopts += '-DJPEG_INCLUDE_DIR=$EBROOTLIBJPEGMINTURBO/include ' -configopts += '-DJASPER_LIBRARY=$EBROOTJASPER/lib/libjasper.a ' -configopts += '-DJASPER_INCLUDE_DIR=$EBROOTJASPER/include ' -configopts += '-DWITH_IPP=ON ' -configopts += '-DENABLE_SSE=ON -DENABLE_SSE2=ON -DENABLE_SSE3=ON ' -configopts += '-DWITH_CUDA=OFF ' - -sanity_check_paths = { - 'files': [ - 'lib/libopencv_core.%s' % - SHLIB_EXT] + [ - 'lib/python%%(pyshortver)s/site-packages/cv2.%s' % - SHLIB_EXT] + [ - 'bin/opencv_%s' % - x for x in [ - 'annotation', 'createsamples', 'traincascade']], 'dirs': ['include']} - -modextrapaths = { - 'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages', - 'CLASSPATH': 'share/OpenCV/java', -} - -moduleclass = 'vis' diff --git a/o/OpenCV/OpenCV-3.1.0-intel-2016b.eb b/o/OpenCV/OpenCV-3.1.0-intel-2016b.eb deleted file mode 100644 index f0ec1884..00000000 --- a/o/OpenCV/OpenCV-3.1.0-intel-2016b.eb +++ /dev/null @@ -1,72 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'OpenCV' -version = '3.1.0' - -homepage = 'http://opencv.org/' -description = """OpenCV (Open Source Computer Vision Library) is an open source computer vision - and machine learning software library. OpenCV was built to provide - a common infrastructure for computer vision applications and to accelerate - the use of machine perception in the commercial products.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = ['https://github.com/Itseez/opencv/archive/'] -sources = ['%(version)s.zip'] - -patches = ['OpenCV-%(version)s_with_IPP.patch'] - -builddependencies = [ - ('CMake', '3.5.2'), -] - -dependencies = [ - ('Python', '2.7.12'), - ('zlib', '1.2.8'), - ('FFmpeg', '3.1.3'), - ('libjpeg-turbo', '1.5.0'), - ('libpng', '1.6.24'), - ('LibTIFF', '4.0.6'), - ('JasPer', '1.900.1'), - ('Java', '1.8.0_92', '', True), - ('ant', '1.9.7', '-Java-%(javaver)s', True), - ('GLib', '2.49.5'), - ('GTK+', '2.24.31'), -] - -preconfigopts = 'export IPPROOT=$EBROOTICC/ipp && ' - -configopts = '-DCMAKE_BUILD_TYPE=RELEASE ' -configopts += '-DBUILD_PYTHON_SUPPORT=ON ' -configopts += '-DPYTHON_PACKAGES_PATH=%(installdir)s/lib/python%(pyshortver)s/site-packages ' -configopts += '-DBUILD_NEW_PYTHON_SUPPORT=ON ' -configopts += '-DZLIB_LIBRARY=$EBROOTZLIB/lib/libz.%s ' % SHLIB_EXT -configopts += '-DZLIB_INCLUDE_DIR=$EBROOTZLIB/include ' -configopts += '-DTIFF_LIBRARY=$EBROOTLIBTIFF/lib/libtiff.%s ' % SHLIB_EXT -configopts += '-DTIFF_INCLUDE_DIR=$EBROOTLIBTIFF/include ' -configopts += '-DPNG_LIBRARY=$EBROOTLIBPNG/lib/libpng.%s ' % SHLIB_EXT -configopts += '-DPNG_INCLUDE_DIR=$EBROOTLIBPNG/include ' -configopts += '-DJPEG_LIBRARY=$EBROOTLIBJPEGMINTURBO/lib/libjpeg.%s ' % SHLIB_EXT -configopts += '-DJPEG_INCLUDE_DIR=$EBROOTLIBJPEGMINTURBO/include ' -configopts += '-DJASPER_LIBRARY=$EBROOTJASPER/lib/libjasper.a ' -configopts += '-DJASPER_INCLUDE_DIR=$EBROOTJASPER/include ' -configopts += '-DWITH_IPP=ON ' -configopts += '-DENABLE_SSE=ON -DENABLE_SSE2=ON -DENABLE_SSE3=ON ' -configopts += '-DWITH_CUDA=OFF ' - -sanity_check_paths = { - 'files': [ - 'lib/libopencv_core.%s' % - SHLIB_EXT] + [ - 'lib/python%%(pyshortver)s/site-packages/cv2.%s' % - SHLIB_EXT] + [ - 'bin/opencv_%s' % - x for x in [ - 'annotation', 'createsamples', 'traincascade']], 'dirs': ['include']} - -modextrapaths = { - 'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages', - 'CLASSPATH': 'share/OpenCV/java', -} - -moduleclass = 'vis' diff --git a/o/OpenDX/OpenDX-4.4.4-foss-2015g.eb b/o/OpenDX/OpenDX-4.4.4-foss-2015g.eb deleted file mode 100644 index 67311a2f..00000000 --- a/o/OpenDX/OpenDX-4.4.4-foss-2015g.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'OpenDX' -version = '4.4.4' - -homepage = 'http://www.opendx.org' -description = """Open source visualization software package based on IBM's Visualization Data Explorer.""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = ['%s' % homepage] -sources = [SOURCELOWER_TAR_GZ] - -preconfigopts = 'export CPPFLAGS="$CPPFLAGS -I/usr/src/kernels/2.6.32-504.16.2.el6.x86_64/include" && ' - -dependencies = [('netCDF', '4.3.2'), - ('motif', '2.3.4', '-libX11-1.6.2'), - ] - -sanity_check_paths = { - 'files': ['bin/dx'], - 'dirs': ['dx', 'bin'], -} - -moduleclass = 'vis' diff --git a/o/OpenPGM/OpenPGM-5.2.122-foss-2015a.eb b/o/OpenPGM/OpenPGM-5.2.122-foss-2015a.eb deleted file mode 100644 index 34c308ea..00000000 --- a/o/OpenPGM/OpenPGM-5.2.122-foss-2015a.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'OpenPGM' -version = '5.2.122' - -homepage = 'http://code.google.com/p/openpgm/' -description = """OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) - specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol - that enables receivers to detect loss, request retransmission of lost data, or notify an application - of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible - for ensuring all data is received, absolving the sender of reception responsibility.""" - -toolchain = {'name': 'foss', 'version': '2015a'} - -source_urls = [GOOGLECODE_SOURCE] -sources = ['libpgm-%(version)s.tar.gz'] - -configopts = '--with-pic' - -start_dir = 'pgm' - -sanity_check_paths = { - 'files': ['lib/libpgm.%s' % SHLIB_EXT, 'lib/libpgm.a'], - 'dirs': ['include'], -} - -moduleclass = 'system' diff --git a/o/OpenPGM/OpenPGM-5.2.122-foss-2016a.eb b/o/OpenPGM/OpenPGM-5.2.122-foss-2016a.eb deleted file mode 100644 index 5f92dedd..00000000 --- a/o/OpenPGM/OpenPGM-5.2.122-foss-2016a.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'OpenPGM' -version = '5.2.122' - -homepage = 'http://code.google.com/p/openpgm/' -description = """OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) - specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol - that enables receivers to detect loss, request retransmission of lost data, or notify an application - of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible - for ensuring all data is received, absolving the sender of reception responsibility.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [GOOGLECODE_SOURCE] -sources = ['libpgm-%(version)s.tar.gz'] - -configopts = '--with-pic' - -start_dir = 'pgm' - -sanity_check_paths = { - 'files': ['lib/libpgm.%s' % SHLIB_EXT, 'lib/libpgm.a'], - 'dirs': ['include'], -} - -moduleclass = 'system' diff --git a/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb b/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb deleted file mode 100644 index 690b4d99..00000000 --- a/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'OpenPGM' -version = '5.2.122' - -homepage = 'http://code.google.com/p/openpgm/' -description = """OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) - specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol - that enables receivers to detect loss, request retransmission of lost data, or notify an application - of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible - for ensuring all data is received, absolving the sender of reception responsibility.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -source_urls = [GOOGLECODE_SOURCE] -sources = ['libpgm-%(version)s.tar.gz'] - -configopts = '--with-pic' - -start_dir = 'pgm' - -sanity_check_paths = { - 'files': ['lib/libpgm.%s' % SHLIB_EXT, 'lib/libpgm.a'], - 'dirs': ['include'], -} - -moduleclass = 'system' diff --git a/o/OpenPGM/OpenPGM-5.2.122-intel-2015b.eb b/o/OpenPGM/OpenPGM-5.2.122-intel-2015b.eb deleted file mode 100644 index 26e1420f..00000000 --- a/o/OpenPGM/OpenPGM-5.2.122-intel-2015b.eb +++ /dev/null @@ -1,28 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'OpenPGM' -version = '5.2.122' - -homepage = 'http://code.google.com/p/openpgm/' -description = """OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) - specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol - that enables receivers to detect loss, request retransmission of lost data, or notify an application - of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible - for ensuring all data is received, absolving the sender of reception responsibility.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True} - -source_urls = [GOOGLECODE_SOURCE] -sources = ['libpgm-%(version)s.tar.gz'] - -configopts = '--with-pic' - -start_dir = 'pgm' - -sanity_check_paths = { - 'files': ['lib/libpgm.so', 'lib/libpgm.a'], - 'dirs': ['include'], -} - -moduleclass = 'system' diff --git a/o/OpenPGM/OpenPGM-5.2.122-intel-2016a.eb b/o/OpenPGM/OpenPGM-5.2.122-intel-2016a.eb deleted file mode 100644 index d391dfe9..00000000 --- a/o/OpenPGM/OpenPGM-5.2.122-intel-2016a.eb +++ /dev/null @@ -1,28 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'OpenPGM' -version = '5.2.122' - -homepage = 'http://code.google.com/p/openpgm/' -description = """OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) - specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol - that enables receivers to detect loss, request retransmission of lost data, or notify an application - of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible - for ensuring all data is received, absolving the sender of reception responsibility.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'pic': True} - -source_urls = [GOOGLECODE_SOURCE] -sources = ['libpgm-%(version)s.tar.gz'] - -configopts = '--with-pic' - -start_dir = 'pgm' - -sanity_check_paths = { - 'files': ['lib/libpgm.%s' % SHLIB_EXT, 'lib/libpgm.a'], - 'dirs': ['include'], -} - -moduleclass = 'system' diff --git a/p/PARI-GP/PARI-GP-2.7.6-foss-2016a.eb b/p/PARI-GP/PARI-GP-2.7.6-foss-2016a.eb deleted file mode 100644 index f5d3f9c8..00000000 --- a/p/PARI-GP/PARI-GP-2.7.6-foss-2016a.eb +++ /dev/null @@ -1,37 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'PARI-GP' -version = '2.7.6' - -homepage = 'http://pari.math.u-bordeaux.fr' -description = """PARI/GP is a widely used computer algebra system designed for fast computations in number theory - (factorizations, algebraic number theory, elliptic curves...), but also contains a large number of other useful - functions to compute with mathematical entities such as matrices, polynomials, power series, algebraic numbers etc., - and a lot of transcendental functions. PARI is also available as a C library to allow for faster computations. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = ['pari-%(version)s.tar.gz'] -source_urls = ['http://pari.math.u-bordeaux.fr/pub/pari/unix/'] - -skipsteps = ['configure'] - -prebuildopts = './Configure --prefix=%(installdir)s &&' - -dependencies = [ - ('libreadline', '6.3'), - ('ncurses', '6.0'), -] - -sanity_check_paths = { - 'files': [ - "bin/%s" % - binfile for binfile in [ - 'gp', 'gp-2.7', 'gphelp', 'tex2mail']] + [ - "include/pari/%s" % - incfile for incfile in [ - 'pari.h', 'genpari.h']], 'dirs': [ - "bin", "include"]} - -moduleclass = 'math' diff --git a/p/PCMSolver/PCMSolver-20160205-intel-2016a-Python-2.7.11.eb b/p/PCMSolver/PCMSolver-20160205-intel-2016a-Python-2.7.11.eb deleted file mode 100644 index 861cd9d9..00000000 --- a/p/PCMSolver/PCMSolver-20160205-intel-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,43 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'PCMSolver' -version = '20160205' - -homepage = 'https://pcmsolver.readthedocs.org' -description = """An API for the Polarizable Continuum Model.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'cstd': 'c99'} - -sources = ['2473699d6c5db36525160e.tar.gz'] -source_urls = ['https://github.com/PCMSolver/pcmsolver/archive/'] - -python = 'Python' -pyver = '2.7.11' -versionsuffix = '-%s-%s' % (python, pyver) - -dependencies = [ - (python, pyver), - ('zlib', '1.2.8'), - ('Boost', '1.59.0', versionsuffix), -] - -builddependencies = [ - ('CMake', '3.4.3'), - ('Eigen', '3.2.7'), -] - -configopts = '-DCMAKE_BUILD_TYPE=Release -DEIGEN3_ROOT=$EBROOTEIGEN -DCMAKE_CXX_FLAGS="$LIBLAPACK_MT -DEIGEN_USE_MKL_ALL"' - -separate_build_dir = True - -runtest = 'test' - -postinstallcmds = ["chmod +x %(installdir)s/bin/pcmsolver.py"] - -sanity_check_paths = { - 'files': ['bin/pcmsolver.py', 'lib/libpcm.a', 'lib/libpcm.%s' % SHLIB_EXT], - 'dirs': ['include'] -} - -moduleclass = 'chem' diff --git a/p/PCRE/PCRE-8.36-intel-2015b.eb b/p/PCRE/PCRE-8.36-intel-2015b.eb deleted file mode 100644 index cc335756..00000000 --- a/p/PCRE/PCRE-8.36-intel-2015b.eb +++ /dev/null @@ -1,21 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-06-30_13-40-45 -easyblock = 'ConfigureMake' - -name = 'PCRE' -version = '8.36' - -homepage = 'http://www.pcre.org/' -description = """ - The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax - and semantics as Perl 5. -""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'optarch': True, 'pic': True} - -configopts = "--with-pic --disable-cpp" - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -moduleclass = 'devel' diff --git a/p/PCRE2/PCRE2-10.21-foss-2016a.eb b/p/PCRE2/PCRE2-10.21-foss-2016a.eb deleted file mode 100644 index 8cdc86ce..00000000 --- a/p/PCRE2/PCRE2-10.21-foss-2016a.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'PCRE2' -version = '10.21' - -homepage = 'http://www.pcre.org/' -description = """ - The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax - and semantics as Perl 5. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'optarch': True, 'pic': True} - -source_urls = ['http://download.sourceforge.net/pcre'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = "--with-pic --disable-cpp --enable-jit" - -sanity_check_paths = { - 'files': [ - "bin/pcre2-config", - "bin/pcre2grep", - "bin/pcre2test", - "lib/libpcre2-8.a"], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/p/PETSc/PETSc-3.5.3-intel-2015b-Python-2.7.9.eb b/p/PETSc/PETSc-3.5.3-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index bc72ecb8..00000000 --- a/p/PETSc/PETSc-3.5.3-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,32 +0,0 @@ -name = 'PETSc' -version = '3.5.3' -versionsuffix = '-Python-2.7.9' - -homepage = 'http://www.mcs.anl.gov/petsc' -description = """PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the - scalable (parallel) solution of scientific applications modeled by partial differential equations.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'usempi': True, 'pic': True} - -source_urls = ['http://ftp.mcs.anl.gov/pub/petsc/release-snapshots'] -sources = [SOURCELOWER_TAR_GZ] - -patches = ['PETSc_ranlib-fix.patch'] - -parmetis = 'ParMETIS' -parmetis_ver = '4.0.3' -dependencies = [ - ('Boost', '1.58.0', versionsuffix), - ('FIAT', '1.6.0', versionsuffix), - ('METIS', '5.1.0'), - (parmetis, parmetis_ver), - ('ScientificPython', '2.9.4', versionsuffix), - ('SCOTCH', '6.0.3'), - ('SuiteSparse', '4.4.3', '-%s-%s' % (parmetis, parmetis_ver)), - ('Hypre', '2.10.0b'), -] - -builddependencies = [('CMake', '3.0.0')] - -moduleclass = 'numlib' diff --git a/p/PETSc/PETSc-3.6.1-intel-2015b-Python-2.7.9.eb b/p/PETSc/PETSc-3.6.1-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index 2c30558d..00000000 --- a/p/PETSc/PETSc-3.6.1-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,39 +0,0 @@ -name = 'PETSc' -version = '3.6.1' -versionsuffix = '-Python-2.7.9' - -homepage = 'http://www.mcs.anl.gov/petsc' -description = """PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the - scalable (parallel) solution of scientific applications modeled by partial differential equations.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'usempi': True, 'pic': True} - -#configopts = "--with-scientificpython" - -source_urls = ['http://ftp.mcs.anl.gov/pub/petsc/release-snapshots'] -sources = [SOURCELOWER_TAR_GZ] - -patches = ['PETSc_ranlib-fix.patch'] - -parmetis = 'ParMETIS' -parmetis_ver = '4.0.3' -dependencies = [ - ('Boost', '1.58.0', versionsuffix), - ('FIAT', '1.6.0', versionsuffix), - ('METIS', '5.1.0'), - (parmetis, parmetis_ver), - ('ScientificPython', '2.9.4', versionsuffix), - ('SCOTCH', '6.0.3'), - ('SuiteSparse', '4.4.3', '-%s-%s' % (parmetis, parmetis_ver)), - ('Hypre', '2.10.0b'), -] - -sanity_check_paths = { - 'files': [''], - 'dirs': ['bin', 'include'] -} - -builddependencies = [('CMake', '3.0.0')] - -moduleclass = 'numlib' diff --git a/p/PETSc/PETSc-3.6.1-intel-2016.01-Python-2.7.9.eb b/p/PETSc/PETSc-3.6.1-intel-2016.01-Python-2.7.9.eb deleted file mode 100644 index ba20b7b2..00000000 --- a/p/PETSc/PETSc-3.6.1-intel-2016.01-Python-2.7.9.eb +++ /dev/null @@ -1,39 +0,0 @@ -name = 'PETSc' -version = '3.6.1' -versionsuffix = '-Python-2.7.9' - -homepage = 'http://www.mcs.anl.gov/petsc' -description = """PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the - scalable (parallel) solution of scientific applications modeled by partial differential equations.""" - -toolchain = {'name': 'intel', 'version': '2016.01'} -toolchainopts = {'usempi': True, 'pic': True} - -#configopts = "--with-scientificpython" - -source_urls = ['http://ftp.mcs.anl.gov/pub/petsc/release-snapshots'] -sources = [SOURCELOWER_TAR_GZ] - -patches = ['PETSc_ranlib-fix.patch'] - -parmetis = 'ParMETIS' -parmetis_ver = '4.0.3' -dependencies = [ - ('Boost', '1.58.0', versionsuffix), - ('FIAT', '1.6.0', versionsuffix), - ('METIS', '5.1.0'), - (parmetis, parmetis_ver), - ('ScientificPython', '2.9.4', versionsuffix), - ('SCOTCH', '6.0.3'), - ('SuiteSparse', '4.4.3', '-%s-%s' % (parmetis, parmetis_ver)), - ('Hypre', '2.10.0b'), -] - -sanity_check_paths = { - 'files': [], - 'dirs': ['bin', 'include'] -} - -builddependencies = [('CMake', '3.0.0')] - -moduleclass = 'numlib' diff --git a/p/PHYLIP/PHYLIP-3.696-foss-2016a.eb b/p/PHYLIP/PHYLIP-3.696-foss-2016a.eb deleted file mode 100644 index a23dbbc5..00000000 --- a/p/PHYLIP/PHYLIP-3.696-foss-2016a.eb +++ /dev/null @@ -1,24 +0,0 @@ -easyblock = 'MakeCp' - -name = 'PHYLIP' -version = '3.696' - -homepage = 'http://evolution.genetics.washington.edu/phylip' -description = "PHYLIP is a free package of programs for inferring phylogenies." - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://evolution.gs.washington.edu/phylip/download/'] -sources = [SOURCELOWER_TAR_GZ] - -buildopts = '-Csrc -fMakefile.unx all && make -Csrc -fMakefile.unx install' - -files_to_copy = [(['exe/*'], 'bin'), - (['src/libdrawgram.so', 'src/libdrawtree.so'], 'lib')] - -sanity_check_paths = { - 'files': ['lib/libdrawgram.so', 'lib/libdrawtree.so'], - 'dirs': ['bin'], -} - -moduleclass = 'bio' diff --git a/p/PHYLIP/PHYLIP-3.696-intel-2016a.eb b/p/PHYLIP/PHYLIP-3.696-intel-2016a.eb deleted file mode 100644 index 6aeecc39..00000000 --- a/p/PHYLIP/PHYLIP-3.696-intel-2016a.eb +++ /dev/null @@ -1,24 +0,0 @@ -easyblock = 'MakeCp' - -name = 'PHYLIP' -version = '3.696' - -homepage = 'http://evolution.genetics.washington.edu/phylip' -description = "PHYLIP is a free package of programs for inferring phylogenies." - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['http://evolution.gs.washington.edu/phylip/download/'] -sources = [SOURCELOWER_TAR_GZ] - -buildopts = '-Csrc -fMakefile.unx all && make -Csrc -fMakefile.unx install' - -files_to_copy = [(['exe/*'], 'bin'), - (['src/libdrawgram.so', 'src/libdrawtree.so'], 'lib')] - -sanity_check_paths = { - 'files': ['lib/libdrawgram.so', 'lib/libdrawtree.so'], - 'dirs': ['bin'], -} - -moduleclass = 'bio' diff --git a/p/PLAST/PLAST-2.3.1-foss-2016a-Java-1.8.0_92.eb b/p/PLAST/PLAST-2.3.1-foss-2016a-Java-1.8.0_92.eb deleted file mode 100644 index b2cdbe8a..00000000 --- a/p/PLAST/PLAST-2.3.1-foss-2016a-Java-1.8.0_92.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'PLAST' -version = '2.3.1' -versionsuffix = '-Java-%(javaver)s' - -homepage = "http://www.irisa.fr/symbiose/projects/plast/" -description = """PLAST is a parallel alignment search tool for comparing large protein banks""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [ - 'https://github.com/PLAST-software/plast-library/releases/download/v%(version)s/'] -sources = ['%(namelower)s_source_v%(version)s.tar.gz'] - -builddependencies = [ - ('CMake', '3.5.2'), - ('Perl', '5.22.1') -] - -dependencies = [ - ('Java', '1.8.0_92', '', True), -] - -sanity_check_paths = { - 'files': [], - 'dirs': ['include', 'include/algo', 'include/alignment', 'include/misc'], -} - -moduleclass = 'bio' diff --git a/p/PLUMED/PLUMED-2.1.3-foss-2015b.eb b/p/PLUMED/PLUMED-2.1.3-foss-2015b.eb deleted file mode 100644 index 3b47192e..00000000 --- a/p/PLUMED/PLUMED-2.1.3-foss-2015b.eb +++ /dev/null @@ -1,36 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'PLUMED' -version = '2.1.3' - -homepage = 'http://www.plumed-code.org' -description = """PLUMED is an open source library for free energy calculations - in molecular systems which works together with some of the most popular molecular - dynamics engines. Free energy calculations can be performed as a function of many - order parameters with a particular focus on biological problems, using state of - the art methods such as metadynamics, umbrella sampling and Jarzynski-equation - based steered MD. The software, written in C++, can be easily interfaced with - both fortran and C/C++ codes. - """ - -toolchain = {'name': 'foss', 'version': '2015b'} - -source_urls = [ - 'https://drive.google.com/file/d/0Bz_0by6-gq6BQWx5UEpkVURKNkk/view?usp=drive_web'] -sources = [SOURCELOWER_TGZ] - -patches = ['PLUMED_configure_MPI.patch'] - -configopts = '--enable-mpi' - -dependencies = [ - ('almost', '2.1.0'), - ('libmatheval', '1.1.8') -] - -sanity_check_paths = { - 'files': ['bin/plumed'], - 'dirs': [] -} - -moduleclass = 'bio' diff --git a/p/PLUMED/PLUMED-2.1.3-foss-2015g.eb b/p/PLUMED/PLUMED-2.1.3-foss-2015g.eb deleted file mode 100644 index 2b2113cd..00000000 --- a/p/PLUMED/PLUMED-2.1.3-foss-2015g.eb +++ /dev/null @@ -1,44 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'PLUMED' -version = '2.1.3' - -homepage = 'http://www.plumed-code.org' -description = """PLUMED is an open source library for free energy calculations - in molecular systems which works together with some of the most popular molecular - dynamics engines. Free energy calculations can be performed as a function of many - order parameters with a particular focus on biological problems, using state of - the art methods such as metadynamics, umbrella sampling and Jarzynski-equation - based steered MD. The software, written in C++, can be easily interfaced with - both fortran and C/C++ codes. - """ - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = [ - 'https://drive.google.com/file/d/0Bz_0by6-gq6BQWx5UEpkVURKNkk/view?usp=drive_web'] -sources = [SOURCELOWER_TGZ] - -#patches = ['PLUMED_configure_MPI.patch'] - -preconfigopts = "export CXX=mpic++ && " - -configopts = 'CPPFLAGS="-I$EBROOTALMOST/include/almost -I$EBROOTOPENMPI/include" ' -configopts += 'LDFLAGS="-L$EBROOTALMOST/lib -L$EBROOTSCALAPACK/lib -L$EBROOTOPENMPI/lib -L$EBROOTOPENBLAS/lib -ldl -lscalapack -lopenblas -lmpi -lrt" ' -configopts += '--enable-mpi --enable-almost ' - -dependencies = [ - ('almost', '2.1.0'), - ('libmatheval', '1.1.8') -] - -sanity_check_paths = { - 'files': ['bin/plumed'], - 'dirs': [] -} - -skipsteps = ['test'] - -parallel = 1 - -moduleclass = 'bio' diff --git a/p/PLUMED/PLUMED-2.1.3-intel-2015b.eb b/p/PLUMED/PLUMED-2.1.3-intel-2015b.eb deleted file mode 100644 index fbe9842b..00000000 --- a/p/PLUMED/PLUMED-2.1.3-intel-2015b.eb +++ /dev/null @@ -1,43 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'PLUMED' -version = '2.1.3' - -homepage = 'http://www.plumed-code.org' -description = """PLUMED is an open source library for free energy calculations - in molecular systems which works together with some of the most popular molecular - dynamics engines. Free energy calculations can be performed as a function of many - order parameters with a particular focus on biological problems, using state of - the art methods such as metadynamics, umbrella sampling and Jarzynski-equation - based steered MD. The software, written in C++, can be easily interfaced with - both fortran and C/C++ codes. - """ - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = [ - 'https://drive.google.com/file/d/0Bz_0by6-gq6BQWx5UEpkVURKNkk/view?usp=drive_web'] -sources = [SOURCELOWER_TGZ] - -patches = ['PLUMED_configure_MPI.patch'] - -configopts = 'CPPFLAGS="-mkl" LIBS="-mkl" ' -configopts += 'CXXFLAGS=-DMPICH_IGNORE_CXX_SEEK ' -configopts += '--enable-mpi' - -builddependencies = [ - ('almost', '2.1.0'), - ('libmatheval', '1.1.8') -] - -dependencies = [ - ('almost', '2.1.0'), - ('libmatheval', '1.1.8') -] - -sanity_check_paths = { - 'files': ['bin/plumed'], - 'dirs': [] -} - -moduleclass = 'bio' diff --git a/p/PLUMED/PLUMED-2.3.0-foss-2016a.eb b/p/PLUMED/PLUMED-2.3.0-foss-2016a.eb deleted file mode 100644 index 146aa35f..00000000 --- a/p/PLUMED/PLUMED-2.3.0-foss-2016a.eb +++ /dev/null @@ -1,46 +0,0 @@ -# by Ward Poelmans - -easyblock = 'ConfigureMake' - -name = 'PLUMED' -version = '2.3.0' - -homepage = 'http://www.plumed-code.org' -description = """PLUMED is an open source library for free energy calculations in molecular systems which - works together with some of the most popular molecular dynamics engines. Free energy calculations can be - performed as a function of many order parameters with a particular focus on biological problems, using - state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. - The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'usempi': 'True'} - -source_urls = ['https://github.com/plumed/plumed2/archive/'] -sources = ['v%(version)s.tar.gz'] - -dependencies = [ - ('zlib', '1.2.8'), - ('GSL', '2.1'), - ('libmatheval', '1.1.8', '', ('dummy', '')), -] - -preconfigopts = 'env FC=$MPIF90 LIBS="$LIBLAPACK $LIBS" ' -configopts = ' --exec-prefix=%(installdir)s --enable-gsl' -prebuildopts = 'source sourceme.sh && ' - -sanity_check_paths = { - 'files': [ - 'bin/plumed', - 'lib/libplumedKernel.%s' % - SHLIB_EXT, - 'lib/libplumed.%s' % - SHLIB_EXT], - 'dirs': ['lib/plumed']} - -modextrapaths = { - 'PLUMED_KERNEL': 'lib/libplumedKernel.%s' % SHLIB_EXT, - 'PLUMED_ROOT': 'lib/plumed', -} - -moduleclass = 'chem' diff --git a/p/PLUMED/PLUMED-2.3b-foss-2015g.eb b/p/PLUMED/PLUMED-2.3b-foss-2015g.eb deleted file mode 100644 index 752efe7b..00000000 --- a/p/PLUMED/PLUMED-2.3b-foss-2015g.eb +++ /dev/null @@ -1,44 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'PLUMED' -version = '2.3b' - -homepage = 'http://www.plumed-code.org' -description = """PLUMED is an open source library for free energy calculations - in molecular systems which works together with some of the most popular molecular - dynamics engines. Free energy calculations can be performed as a function of many - order parameters with a particular focus on biological problems, using state of - the art methods such as metadynamics, umbrella sampling and Jarzynski-equation - based steered MD. The software, written in C++, can be easily interfaced with - both fortran and C/C++ codes. - """ - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = ['https://github.com/plumed/plumed2/archive/'] -sources = ['v%(version)s.tar.gz'] - -#patches = ['PLUMED_configure_MPI.patch'] - -preconfigopts = "export CXX=mpic++ && " - -configopts = 'CPPFLAGS="-I$EBROOTALMOST/include/almost -I$EBROOTOPENMPI/include" ' -configopts += 'LDFLAGS="-L$EBROOTALMOST/lib -L$EBROOTSCALAPACK/lib -L$EBROOTOPENMPI/lib -L$EBROOTOPENBLAS/lib -ldl -lscalapack -lopenblas -lmpi -lrt" ' -configopts += '--enable-mpi --enable-almost ' - -dependencies = [ - ('almost', '2.1.0'), - ('libmatheval', '1.1.8'), - ('xdrfile', '1.1.4') -] - -sanity_check_paths = { - 'files': ['bin/plumed'], - 'dirs': [] -} - -skipsteps = ['test'] - -parallel = 1 - -moduleclass = 'bio' diff --git a/p/PLUMED/PLUMED-2.3b-foss-2016a.eb b/p/PLUMED/PLUMED-2.3b-foss-2016a.eb deleted file mode 100644 index 3c3f2f93..00000000 --- a/p/PLUMED/PLUMED-2.3b-foss-2016a.eb +++ /dev/null @@ -1,44 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'PLUMED' -version = '2.3b' - -homepage = 'http://www.plumed-code.org' -description = """PLUMED is an open source library for free energy calculations - in molecular systems which works together with some of the most popular molecular - dynamics engines. Free energy calculations can be performed as a function of many - order parameters with a particular focus on biological problems, using state of - the art methods such as metadynamics, umbrella sampling and Jarzynski-equation - based steered MD. The software, written in C++, can be easily interfaced with - both fortran and C/C++ codes. - """ - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://github.com/plumed/plumed2/archive/'] -sources = ['v%(version)s.tar.gz'] - -#patches = ['PLUMED_configure_MPI.patch'] - -preconfigopts = "export CXX=mpic++ && " - -configopts = 'CPPFLAGS="-I$EBROOTALMOST/include/almost -I$EBROOTOPENMPI/include" ' -configopts += 'LDFLAGS="-L$EBROOTALMOST/lib -L$EBROOTSCALAPACK/lib -L$EBROOTOPENMPI/lib -L$EBROOTOPENBLAS/lib -ldl -lscalapack -lopenblas -lmpi -lrt" ' -configopts += '--enable-mpi --enable-almost ' - -dependencies = [ - ('almost', '2.1.0'), - ('libmatheval', '1.1.8'), - ('xdrfile', '1.1.4') -] - -sanity_check_paths = { - 'files': ['bin/plumed'], - 'dirs': [] -} - -skipsteps = ['test'] - -parallel = 1 - -moduleclass = 'bio' diff --git a/p/PLUMED/PLUMED-2.3b-intel-2015b.eb b/p/PLUMED/PLUMED-2.3b-intel-2015b.eb deleted file mode 100644 index 39471319..00000000 --- a/p/PLUMED/PLUMED-2.3b-intel-2015b.eb +++ /dev/null @@ -1,44 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'PLUMED' -version = '2.3b' - -homepage = 'http://www.plumed-code.org' -description = """PLUMED is an open source library for free energy calculations - in molecular systems which works together with some of the most popular molecular - dynamics engines. Free energy calculations can be performed as a function of many - order parameters with a particular focus on biological problems, using state of - the art methods such as metadynamics, umbrella sampling and Jarzynski-equation - based steered MD. The software, written in C++, can be easily interfaced with - both fortran and C/C++ codes. - """ - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['https://github.com/plumed/plumed2/archive/'] -sources = ['v%(version)s.tar.gz'] - -#patches = ['PLUMED_configure_MPI.patch'] - -preconfigopts = "export CXX=mpic++ && " - -configopts = 'CPPFLAGS="-I$EBROOTALMOST/include/almost -I$EBROOTOPENMPI/include" ' -configopts += 'LDFLAGS="-L$EBROOTALMOST/lib -L$EBROOTSCALAPACK/lib -L$EBROOTOPENMPI/lib -L$EBROOTOPENBLAS/lib -ldl -lscalapack -lopenblas -lmpi -lrt" ' -configopts += '--enable-mpi --enable-almost ' - -dependencies = [ - ('almost', '2.1.0'), - ('libmatheval', '1.1.8'), - ('xdrfile', '1.1.4') -] - -sanity_check_paths = { - 'files': ['bin/plumed'], - 'dirs': [] -} - -skipsteps = ['test'] - -parallel = 1 - -moduleclass = 'bio' diff --git a/p/PRACE/PRACE-20150630-intel-2015b.eb b/p/PRACE/PRACE-20150630-intel-2015b.eb deleted file mode 100644 index 56aeadcf..00000000 --- a/p/PRACE/PRACE-20150630-intel-2015b.eb +++ /dev/null @@ -1,24 +0,0 @@ -easyblock = 'Bundle' - -name = 'PRACE' -version = '20150630' - -homepage = 'http://www.prace-ri.eu/PRACE-Common-Production' -description = """The PRACE Common Production Environment (PCPE) is a set of software tools and libraries - that are planned to be available on all PRACE execution sites. The PCPE also defines a set of environment - variables that try to make compilation on all sites as homogeneous and simple as possible.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -dependencies = [ - ('make', '3.82'), - ('Java', '1.7.0_79', '', True), - ('Bash', '4.2'), - ('tcsh', '6.18.01'), - ('Tcl', '8.5.12'), - ('Tk', '8.5.12'), - ('netCDF', '4.3.2'), # this one will also bring in HDF5 - ('Perl', '5.16.3'), -] - -moduleclass = 'toolchain' diff --git a/p/PRACE/prace-20160107-intel-2016.01.eb b/p/PRACE/prace-20160107-intel-2016.01.eb deleted file mode 100644 index 1f4f0284..00000000 --- a/p/PRACE/prace-20160107-intel-2016.01.eb +++ /dev/null @@ -1,61 +0,0 @@ -easyblock = 'Bundle' - -name = 'prace' -version = '20160107' - -homepage = 'http://www.prace-ri.eu/PRACE-Common-Production' -description = """**** PRACE Common Production Environment (PCPE) ****\n -Initialisation of the PRACE common production environment. This -allows you to assume that the following tools/libraries are available -by default in your PATH/environment. - - * Fortran, C, C++ Compilers - * MPI - * BLAS, LAPACK, BLACS, ScaLAPACK - * FFTW - * HDF5, NetCDF - -The compiler commands on are: - - * mpif90 - Fortran compiler - * mpicc - C compiler - * mpicxx - C++ compiler - -For more information on the PCPE please see the documentation at: - -http://www.prace-ri.eu/PRACE-Common-Production - -For help using this system, please see Local User Guide available at: - -http://prace-ri.eu/Best-Practice-Guide-Anselm-HTML -""" - -toolchain = {'name': 'intel', 'version': '2016.01'} - -dependencies = [ - ('Java', '1.7.0_79', '', True), - ('netCDF', '4.3.2'), # this one will also bring in HDF5 - ('FFTW', '3.3.4'), - ('CMake', '3.3.1'), - ('PETSc', '3.6.1', '-Python-2.7.9'), -] - -modextravars = { - 'PRACE_FFLAGS': '-ipo -O3 -xAVX -xCORE-AVX2 -qopt-report1 -qopt-report-phase=vec -openmp', - 'PRACE_CFLAGS': '-ipo -O3 -xAVX -xCORE-AVX2 -qopt-report1 -qopt-report-phase=vec -openmp', - 'PRACE_LDFLAGS': '-L$env(LD_LIBRARY_PATH)', - 'PRACE_STORE': '/home/$env(USER)', - 'PRACE_SCRATCH': '/scratch/work/user/$env(USER)', - 'PRACE_ARCH': 'Linux_Generic_X86-64_AVX2', - 'PRACE_COMPILER': 'ICC_16.0.1', - 'PRACE_FTN_VERSION': 'ifort version 16.0.1', - 'PRACE_CC_VERSION': 'icc version 16.0.1 (gcc version 4.9.3 compatibility)', - 'PRACE_CPP_VERSION': 'icc version 16.0.1 (gcc version 4.9.3 compatibility)', -} - -modaliases = {'prftn': "mpifc", - 'prcc': "mpicc", - 'prcpp': "mpicxx" - } - -moduleclass = 'toolchain' diff --git a/p/PRINSEQ/PRINSEQ-0.20.4-foss-2015b-Perl-5.20.3.eb b/p/PRINSEQ/PRINSEQ-0.20.4-foss-2015b-Perl-5.20.3.eb deleted file mode 100644 index d563dcdf..00000000 --- a/p/PRINSEQ/PRINSEQ-0.20.4-foss-2015b-Perl-5.20.3.eb +++ /dev/null @@ -1,122 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# sciCORE - University of Basel -# SIB Swiss Institute of Bioinformatics -# Modified by Adam Huffman -# The Francis Crick Institute - -easyblock = 'Tarball' - -name = 'PRINSEQ' -version = '0.20.4' - -homepage = 'http://prinseq.sourceforge.net' -description = """A bioinformatics tool to PRe-process and show INformation of SEQuence data.""" - -toolchain = {'name': 'foss', 'version': '2015b'} - -source_urls = ['http://sourceforge.net/projects/prinseq/files/standalone/'] -sources = ['%(namelower)s-lite-%(version)s.tar.gz'] - -perl = 'Perl' -perlver = '5.20.3' -versionsuffix = '-%s-%s' % (perl, perlver) - -dependencies = [ - (perl, perlver), -] - -# these are the perl libraries dependencies -exts_defaultclass = 'PerlModule' -exts_filter = ("perldoc -lm %(ext_name)s ", "") - -exts_list = [ - ('ExtUtils::Depends', '0.405', { - 'source_tmpl': 'ExtUtils-Depends-0.405.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/X/XA/XAOC/'], - }), - ('ExtUtils::PkgConfig', '1.15', { - 'source_tmpl': 'ExtUtils-PkgConfig-1.15.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/X/XA/XAOC/'], - }), - ('Getopt::Long', '2.48', { - 'source_tmpl': 'Getopt-Long-2.48.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JV/JV/'], - }), - ('Pod::Usage', '1.68', { - 'source_tmpl': 'Pod-Usage-1.68.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAREKR/'], - }), - ('File::Temp', '0.2304', { - 'source_tmpl': 'File-Temp-0.2304.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], - }), - ('Digest::MD5', '2.54', { - 'source_tmpl': 'Digest-MD5-2.54.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS/'], - }), - ('File::Spec', '3.62', { - 'source_tmpl': 'PathTools-3.62.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], - }), - ('JSON', '2.90', { - 'source_tmpl': 'JSON-2.90.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA/'], - }), - ('Cairo', '1.106', { - 'source_tmpl': 'Cairo-1.106.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/X/XA/XAOC/'], - }), - ('Statistics::PCA', '0.0.1', { - 'source_tmpl': 'Statistics-PCA-0.0.1.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSTH/'], - }), - ('MIME::Base64', '3.15', { - 'source_tmpl': 'MIME-Base64-3.15.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS/'], - }), - ('Math::Cephes::Matrix', '0.5304', { - 'source_tmpl': 'Math-Cephes-0.5304.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/'], - }), - ('Math::MatrixReal', '2.12', { - 'source_tmpl': 'Math-MatrixReal-2.12.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LETO/'], - }), - ('Text::SimpleTable', '2.03', { - 'source_tmpl': 'Text-SimpleTable-2.03.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MR/MRAMBERG/'], - }), - ('Contextual::Return', '0.004008', { - 'source_tmpl': 'Contextual-Return-0.004008.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DC/DCONWAY/'], - }), - ('Want', '0.26', { - 'source_tmpl': 'Want-0.26.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN/'], - }), -] - -# this is the script which relies in many extra Perl libraries so we -# verify it's working fine -sanity_check_commands = [('perl', '%(installdir)s/prinseq-graphs.pl')] - -modextrapaths = { - 'PATH': "", # add installation dir to PATH - 'PERL5LIB': 'lib/perl5/site_perl/%s/' % (perlver) -} - -postinstallcmds = [ - # fix shebang line - "sed -i -e 's|/usr/bin/perl|/usr/bin/env\ perl|' %(installdir)s/*.pl", - "chmod +x %(installdir)s/*.pl" # add execution permission -] - -sanity_check_paths = { - 'files': [ - 'prinseq-lite.pl', - 'prinseq-graphs.pl', - 'prinseq-graphs-noPCA.pl'], - 'dirs': []} - -moduleclass = 'bio' diff --git a/p/PROJ_4/PROJ_4-4.9.2-foss-2015g.eb b/p/PROJ_4/PROJ_4-4.9.2-foss-2015g.eb deleted file mode 100644 index aca4b158..00000000 --- a/p/PROJ_4/PROJ_4-4.9.2-foss-2015g.eb +++ /dev/null @@ -1,15 +0,0 @@ -name = 'PROJ_4' -version = '4.9.2' - -easyblock = 'ConfigureMake' - -homepage = 'http://proj.osgeo.org' -description = """PROJ.4 - Cartographic Projections Library originally written by Gerald Evenden then of the USGS. -""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -sources = ['%(version)s.tar.gz'] -source_urls = ['https://github.com/OSGeo/proj.4/archive/'] - -moduleclass = 'geo' diff --git a/p/PSI/PSI-4.0b5-intel-2015a-mt-maxam7-Python-2.7.10.eb b/p/PSI/PSI-4.0b5-intel-2015a-mt-maxam7-Python-2.7.10.eb deleted file mode 100644 index c7939e91..00000000 --- a/p/PSI/PSI-4.0b5-intel-2015a-mt-maxam7-Python-2.7.10.eb +++ /dev/null @@ -1,40 +0,0 @@ -name = 'PSI' -version = '4.0b5' -# 'maxam7': maximum angular momentum increased to 7 via LIBINT_OPT_AM -versionsuffix = '-mt-maxam7' - -homepage = 'http://www.psicode.org/' -description = """PSI4 is an open-source suite of ab initio quantum chemistry programs designed for - efficient, high-accuracy simulations of a variety of molecular properties. We can routinely perform - computations with more than 2500 basis functions running serially or in parallel.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -# not using MPI results in a build relying on multithreaded BLAS solely -toolchainopts = {'usempi': False} - -source_urls = ['http://download.sourceforge.net/psicode/'] -sources = ['%(namelower)s%(version)s.tar.gz'] - -patches = [ - 'PSI-4.0b5-failed-test.patch', # the test works but it segfaults on exit - 'PSI-4.0b5-thread-pool.patch', - 'PSI-4.0b5-new-plugin.patch', - # workaround for broken python-config due to full path to bin/python being - # used - 'PSI-%(version)s_python-config.patch', -] - -python = 'Python' -pyver = '2.7.10' -pysuff = '-%s-%s' % (python, pyver) -versionsuffix += pysuff - -dependencies = [ - (python, pyver), - ('Boost', '1.59.0', pysuff), -] - -# increase maximum angular momentum to 7 -configopts = '--with-max-am-eri=7' - -moduleclass = 'chem' diff --git a/p/PSI/PSI-4.0b6-20160201-intel-2016a-mt-Python-2.7.11.eb b/p/PSI/PSI-4.0b6-20160201-intel-2016a-mt-Python-2.7.11.eb deleted file mode 100644 index b1d49246..00000000 --- a/p/PSI/PSI-4.0b6-20160201-intel-2016a-mt-Python-2.7.11.eb +++ /dev/null @@ -1,46 +0,0 @@ -name = 'PSI' -version = '4.0b6-20160201' -versionsuffix = '-mt' - -homepage = 'http://www.psicode.org/' -description = """PSI4 is an open-source suite of ab initio quantum chemistry programs designed for - efficient, high-accuracy simulations of a variety of molecular properties. We can routinely perform - computations with more than 2500 basis functions running serially or in parallel.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'usempi': False} - -source_urls = ['https://github.com/psi4/psi4public/archive/'] -sources = ['e4070d0024742579.tar.gz'] - -patches = [ - 'PSI-%(version)s-fix-gitversion.patch', - 'PSI-%(version)s-plugin-fix.patch', -] - -python = 'Python' -pyver = '2.7.11' -pysuff = '-%s-%s' % (python, pyver) -versionsuffix += pysuff - -dependencies = [ - (python, pyver), - ('Boost', '1.59.0', pysuff), - ('PCMSolver', '20160205', pysuff), - ('CheMPS2', '1.6'), -] - -builddependencies = [ - ('CMake', '3.4.3'), - ('Perl', '5.22.1', '-bare'), # for the test suite -] - -configopts = '-DENABLE_MPI=OFF -DENABLE_OMP=ON -DENABLE_UNIT_TESTS=ON -DENABLE_CHEMPS2=ON -DENABLE_PLUGINS=ON' -configopts += ' -DENABLE_DUMMY_PLUGIN=ON -DCHEMPS2_ROOT=$EBROOTCHEMPS2' -configopts += ' -DENABLE_PCMSOLVER=ON -DPCMSOLVER_ROOT=$EBROOTPCMSOLVER' - -# Execute 4 tests in parallel -runtest = 'ARGS="-V -E \'opt10|pubchem1|pubchem2|pywrap-opt-sowreap|sapt4\' -j 4" test' - - -moduleclass = 'chem' diff --git a/p/PSI4/PSI4-1.0-intel-2016a-Python-2.7.11.eb b/p/PSI4/PSI4-1.0-intel-2016a-Python-2.7.11.eb deleted file mode 100644 index 46c18417..00000000 --- a/p/PSI4/PSI4-1.0-intel-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,44 +0,0 @@ -easyblock = 'EB_PSI' - -name = 'PSI4' -version = '1.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.psicode.org/' -description = """PSI4 is an open-source suite of ab initio quantum chemistry programs designed for - efficient, high-accuracy simulations of a variety of molecular properties. We can routinely perform - computations with more than 2500 basis functions running serially or in parallel.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'usempi': True} - -source_urls = ['https://github.com/psi4/psi4/archive/'] -sources = ['%(version)s.tar.gz'] - -patches = [ - 'PSI4-%(version)s-plugin-fix.patch', - 'PSI4-%(version)s-disable-ambit.patch', -] - -dependencies = [ - ('Python', '2.7.11'), - ('Boost', '1.61.0', versionsuffix), - ('PCMSolver', '1.1.4', versionsuffix), - ('CheMPS2', '1.7.2'), -] - -builddependencies = [ - ('CMake', '3.5.2'), - # ('Perl', '5.22.1', '-bare'), # for the test suite -] - -configopts = '-DENABLE_MPI=ON -DENABLE_OMP=ON -DENABLE_UNIT_TESTS=ON -DENABLE_CHEMPS2=ON -DENABLE_PLUGINS=ON' - -# CMake will pick mpiexec by default and this fails with intel MPI -#configopts += ' -DMPIEXEC=$EBROOTIMPI/bin64/mpirun' - -# The tests don't work with MPI (most of them hang or fail) -# ref: https://github.com/psi4/psi4/pull/436#issuecomment-230519769 -runtest = False - -moduleclass = 'chem' diff --git a/p/PSORTb/PSORTb-3.0.4-foss-2016a-Perl-5.22.1.eb b/p/PSORTb/PSORTb-3.0.4-foss-2016a-Perl-5.22.1.eb deleted file mode 100644 index 0b345cb8..00000000 --- a/p/PSORTb/PSORTb-3.0.4-foss-2016a-Perl-5.22.1.eb +++ /dev/null @@ -1,46 +0,0 @@ -easyblock = 'PerlModule' - -name = 'PSORTb' -version = '3.0.4' -versionsuffix = '-Perl-%(perlver)s' - -homepage = 'http://psort.org/psortb/index.html' -description = """PSORTb v3.0.4 is the most precise bacterial localization prediction tool available.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://www.psort.org/download/'] -sources = ['bio-tools-psort-all.%(version)s.tar.gz'] - -patches = [ - 'PSORTb-%(version)s-libpsortb.patch', -] - -dependencies = [ - ('Perl', '5.22.1'), - ('libpsortb', '1.0'), - ('BioPerl', '1.6.924', '-Perl-5.22.1'), - ('BLAST', '2.2.26', '-Linux_x86_64', True), - ('pftoolsV3', '20160324'), -] - -options = {'modulename': 'Bio::Tools::PSort'} - -preconfigopts = "export PSORTROOT=%(installdir)s && " - -prebuildopts = 'sed -i "s/CC = cc/CC ?= gcc/" bio-tools-psort-modhmm/Makefile && ' - -postinstallcmds = [ - "cp -r psort/* %(installdir)s/.", -] - -sanity_check_paths = { - 'files': [ - 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM.pm', - 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort.pm'], - 'dirs': [ - 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM', - 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort'], -} - -moduleclass = 'bio' diff --git a/p/ParaView/ParaView-4.3.1-intel-2015a-Python-2.7.10-mpi.eb b/p/ParaView/ParaView-4.3.1-intel-2015a-Python-2.7.10-mpi.eb deleted file mode 100644 index c7cd56cf..00000000 --- a/p/ParaView/ParaView-4.3.1-intel-2015a-Python-2.7.10-mpi.eb +++ /dev/null @@ -1,55 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'ParaView' -version = '4.3.1' - -homepage = "http://www.paraview.org" -description = "ParaView is a scientific parallel visualizer." - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'pic': True} - -download_suffix = 'download.php?submit=Download&version=v%(version_major_minor)s&type=source&os=all&downloadFile=' -source_urls = [ - 'http://www.paraview.org/paraview-downloads/%s' % - download_suffix] -sources = ["ParaView-v%(version)s-source.tar.gz"] - -patches = ['%(name)s-%(version)s_missingheader.patch'] - -python = 'Python' -pyver = '2.7.10' -versionsuffix = '-%s-%s-mpi' % (python, pyver) -pysuff = '-%s-%s' % (python, pyver) -dependencies = [ - ('Mesa', '10.5.5', pysuff), - ('libGLU', '9.0.0', pysuff), - ('libXt', '1.1.4', pysuff), - ('Qt', '4.8.6', '%s%s' % ('-GLib-2.44.1', pysuff)), - ('libXext', '1.3.3', pysuff), - ('libX11', '1.6.3', pysuff), - ('zlib', '1.2.8'), -] - -builddependencies = [('CMake', '3.2.2')] - -separate_build_dir = True - -maxparallel = 4 - -configopts = '-DPARAVIEW_INSTALL_DEVELOPMENT_FILES=ON -DVTK_OPENGL_HAS_OSMESA=ON -DPARAVIEW_USE_MPI=ON ' -configopts += '-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include -DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.so ' -configopts += '-DOSMESA_INCLUDE_DIR=$EBROOTMESA/include -DOSMESA_LIBRARY=$EBROOTMESA/lib/libOSMesa.so ' -# Without internet connection turn off testing (uncomment the following line) -#configopts += '-DBUILD_TESTING=OFF ' -# Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md -# and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly -# Without internet connection, comment the following two lines (configopts -# and prebuildopts) -configopts += '-DExternalData_OBJECT_STORES=%(builddir)s/ExternalData ' -# The ParaView server can be cranky, test downloads are quite often failing, especially in the case -# of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the -# first serial attempt would fail. -prebuildopts = 'make VTKData ;' - -moduleclass = 'vis' diff --git a/p/ParaView/ParaView-4.3.1-intel-2015a-Python-2.7.10.eb b/p/ParaView/ParaView-4.3.1-intel-2015a-Python-2.7.10.eb deleted file mode 100644 index 49905e67..00000000 --- a/p/ParaView/ParaView-4.3.1-intel-2015a-Python-2.7.10.eb +++ /dev/null @@ -1,54 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'ParaView' -version = '4.3.1' - -homepage = "http://www.paraview.org" -description = "ParaView is a scientific parallel visualizer" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'usempi': False, 'pic': True} - -download_suffix = 'download.php?submit=Download&version=v%(version_major_minor)s&type=source&os=all&downloadFile=' -source_urls = [ - 'http://www.paraview.org/paraview-downloads/%s' % - download_suffix] -sources = ["ParaView-v%(version)s-source.tar.gz"] - -patches = ['%(name)s-%(version)s_missingheader.patch'] - -python = 'Python' -pyver = '2.7.10' -versionsuffix = '-%s-%s' % (python, pyver) -dependencies = [ - ('Mesa', '10.5.5', versionsuffix), - ('libGLU', '9.0.0', versionsuffix), - ('libXt', '1.1.4', versionsuffix), - ('Qt', '4.8.6', '%s%s' % ('-GLib-2.44.1', versionsuffix)), - ('libXext', '1.3.3', versionsuffix), - ('libX11', '1.6.3', versionsuffix), - ('zlib', '1.2.8'), -] - -builddependencies = [('CMake', '3.2.2')] - -separate_build_dir = True - -maxparallel = 4 - -configopts = '-DPARAVIEW_INSTALL_DEVELOPMENT_FILES=ON -DVTK_OPENGL_HAS_OSMESA=ON ' -configopts += '-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include -DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.so ' -configopts += '-DOSMESA_INCLUDE_DIR=$EBROOTMESA/include -DOSMESA_LIBRARY=$EBROOTMESA/lib/libOSMesa.so ' -# Without internet connection turn off testing (uncomment the following line) -#configopts += '-DBUILD_TESTING=OFF ' -# Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md -# and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly -# Without internet connection, comment the following two lines (configopts -# and prebuildopts) -configopts += '-DExternalData_OBJECT_STORES=%(builddir)s/ExternalData ' -# The ParaView server can be cranky, test downloads are quite often failing, especially in the case -# of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the -# first serial attempt would fail. -prebuildopts = 'make VTKData ;' - -moduleclass = 'vis' diff --git a/p/ParaView/ParaView-4.4.0-intel-2015b-mpi.eb b/p/ParaView/ParaView-4.4.0-intel-2015b-mpi.eb deleted file mode 100644 index 2c138dc8..00000000 --- a/p/ParaView/ParaView-4.4.0-intel-2015b-mpi.eb +++ /dev/null @@ -1,55 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'ParaView' -version = '4.4.0' -versionsuffix = '-mpi' - -homepage = "http://www.paraview.org" -description = "ParaView is a scientific parallel visualizer." - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True, 'usempi': True} - -download_suffix = 'download.php?submit=Download&version=v%(version_major_minor)s&type=source&os=all&downloadFile=' -source_urls = [ - 'http://www.paraview.org/paraview-downloads/%s' % - download_suffix] -sources = ["ParaView-v%(version)s-source.tar.gz"] - -patches = ['%(name)s-%(version)s_missingheader.patch'] - -python = 'Python' -pyver = '2.7.10' -pysuff = '-%s-%s' % (python, pyver) -dependencies = [ - ('Mesa', '11.0.2', pysuff), - ('libGLU', '9.0.0'), - ('libXt', '1.1.5'), - ('Qt', '4.8.7'), - ('libXext', '1.3.3'), - ('libX11', '1.6.3', pysuff), - ('zlib', '1.2.8'), -] - -builddependencies = [('CMake', '3.3.2')] - -separate_build_dir = True - -maxparallel = 4 - -configopts = '-DPARAVIEW_INSTALL_DEVELOPMENT_FILES=ON -DVTK_OPENGL_HAS_OSMESA=ON -DPARAVIEW_USE_MPI=ON ' -configopts += '-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include -DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.so ' -configopts += '-DOSMESA_INCLUDE_DIR=$EBROOTMESA/include -DOSMESA_LIBRARY=$EBROOTMESA/lib/libOSMesa.so ' -# Without internet connection turn off testing (uncomment the following line) -#configopts += '-DBUILD_TESTING=OFF ' -# Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md -# and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly -# Without internet connection, comment the following two lines (configopts -# and prebuildopts) -configopts += '-DExternalData_OBJECT_STORES=%(builddir)s/ExternalData ' -# The ParaView server can be cranky, test downloads are quite often failing, especially in the case -# of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the -# first serial attempt would fail. -prebuildopts = 'make VTKData ;' - -moduleclass = 'vis' diff --git a/p/ParaView/ParaView-4.4.0-intel-2015b.eb b/p/ParaView/ParaView-4.4.0-intel-2015b.eb deleted file mode 100644 index 3153e097..00000000 --- a/p/ParaView/ParaView-4.4.0-intel-2015b.eb +++ /dev/null @@ -1,54 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'ParaView' -version = '4.4.0' - -homepage = "http://www.paraview.org" -description = "ParaView is a scientific parallel visualizer." - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True, 'usempi': False} - -download_suffix = 'download.php?submit=Download&version=v%(version_major_minor)s&type=source&os=all&downloadFile=' -source_urls = [ - 'http://www.paraview.org/paraview-downloads/%s' % - download_suffix] -sources = ["ParaView-v%(version)s-source.tar.gz"] - -patches = ['%(name)s-%(version)s_missingheader.patch'] - -python = 'Python' -pyver = '2.7.10' -pysuff = '-%s-%s' % (python, pyver) -dependencies = [ - ('Mesa', '11.0.2', pysuff), - ('libGLU', '9.0.0'), - ('libXt', '1.1.5'), - ('Qt', '4.8.7'), - ('libXext', '1.3.3'), - ('libX11', '1.6.3', pysuff), - ('zlib', '1.2.8'), -] - -builddependencies = [('CMake', '3.3.2')] - -separate_build_dir = True - -maxparallel = 4 - -configopts = '-DPARAVIEW_INSTALL_DEVELOPMENT_FILES=ON -DVTK_OPENGL_HAS_OSMESA=ON ' -configopts += '-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include -DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.so ' -configopts += '-DOSMESA_INCLUDE_DIR=$EBROOTMESA/include -DOSMESA_LIBRARY=$EBROOTMESA/lib/libOSMesa.so ' -# Without internet connection turn off testing (uncomment the following line) -#configopts += '-DBUILD_TESTING=OFF ' -# Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md -# and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly -# Without internet connection, comment the following two lines (configopts -# and prebuildopts) -configopts += '-DExternalData_OBJECT_STORES=%(builddir)s/ExternalData ' -# The ParaView server can be cranky, test downloads are quite often failing, especially in the case -# of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the -# first serial attempt would fail. -prebuildopts = 'make VTKData ;' - -moduleclass = 'vis' diff --git a/p/ParaView/ParaView-4.4.0-intel-2016a.eb b/p/ParaView/ParaView-4.4.0-intel-2016a.eb deleted file mode 100644 index 6f3bbd98..00000000 --- a/p/ParaView/ParaView-4.4.0-intel-2016a.eb +++ /dev/null @@ -1,48 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'ParaView' -version = '4.4.0' - -homepage = "http://www.paraview.org" -description = "ParaView is a scientific parallel visualizer." - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'pic': True, 'usempi': False} - -download_suffix = 'download.php?submit=Download&version=v%(version_major_minor)s&type=source&os=all&downloadFile=' -source_urls = [ - 'http://www.paraview.org/paraview-downloads/%s' % - download_suffix] -sources = ["ParaView-v%(version)s-source.tar.gz"] - -patches = ['%(name)s-%(version)s_missingheader.patch'] - -dependencies = [ - ('libGLU', '9.0.0', '-Mesa-11.2.1'), - ('libXt', '1.1.5'), - ('Qt', '4.8.7'), - ('libXext', '1.3.3'), - ('libX11', '1.6.3'), - ('zlib', '1.2.8'), -] - -builddependencies = [('CMake', '3.5.2')] - -separate_build_dir = True - -configopts = '-DPARAVIEW_INSTALL_DEVELOPMENT_FILES=ON -DVTK_OPENGL_HAS_OSMESA=ON ' -configopts += '-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include -DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.so ' -configopts += '-DOSMESA_INCLUDE_DIR=$EBROOTMESA/include -DOSMESA_LIBRARY=$EBROOTMESA/lib/libOSMesa.so ' -# Without internet connection turn off testing (uncomment the following line) -configopts += '-DBUILD_TESTING=OFF ' -# Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md -# and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly -# Without internet connection, comment the following two lines (configopts -# and prebuildopts) -configopts += '-DExternalData_OBJECT_STORES=%(builddir)s/ExternalData ' -# The ParaView server can be cranky, test downloads are quite often failing, especially in the case -# of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the -# first serial attempt would fail. -prebuildopts = 'make VTKData ;' - -moduleclass = 'vis' diff --git a/p/Paraver/Paraver-4.5.6-foss-2015a.eb b/p/Paraver/Paraver-4.5.6-foss-2015a.eb deleted file mode 100644 index f5a5940d..00000000 --- a/p/Paraver/Paraver-4.5.6-foss-2015a.eb +++ /dev/null @@ -1,32 +0,0 @@ -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild -# Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany -# Authors:: Bernd Mohr -# License:: New BSD -# -# This work is based from experiences from the UNITE project -# http://apps.fz-juelich.de/unite/ -## -name = "Paraver" -version = "4.5.6" - -homepage = 'http://www.bsc.es/computer-sciences/performance-tools/paraver' -description = """A very powerful performance visualization and analysis tool based on - traces that can be used to analyse any information that is expressed on its input trace format. - Traces for parallel MPI, OpenMP and other programs can be genereated with Extrae.""" - -toolchain = {'name': 'foss', 'version': '2015a'} - -compname = 'GCC' -compver = '4.9.2' - -dependencies = [ - ('zlib', '1.2.8', '', (compname, compver)), - ('wxPropertyGrid', '1.4.15', "", (compname, compver)), - ('Boost', '1.58.0', '-serial', (compname, compver)), -] - -# http://www.bsc.es/computer-sciences/performance-tools/downloads -# Requires input of email address for download -sources = ['%(namelower)s-' + "sources" + '-%(version)s.tar.gz'] - -moduleclass = 'perf' diff --git a/p/Paraview/Paraview-4.3-intel-2016.01-OSPRay.eb b/p/Paraview/Paraview-4.3-intel-2016.01-OSPRay.eb deleted file mode 100644 index 8c60e821..00000000 --- a/p/Paraview/Paraview-4.3-intel-2016.01-OSPRay.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'PackedBinary' - -name = 'ParaView' -version = '4.3' -versionsuffix = '-OSPRay' - -homepage = "http://www.paraview.org" -description = "ParaView is a scientific parallel visualizer." - -toolchain = {'name': 'system', 'version': ''} - -download_suffix = 'download.php?submit=Download&version=v%(version_major_minor)s&type=source&os=all&downloadFile=' -source_urls = [ - 'http://www.paraview.org/paraview-downloads/%s' % - download_suffix] -sources = ["PV4_3_pvOSPRay_linux_x86_64.tgz"] - -dependencies = [('intel', '2016.01')] - -install_cmd = "cp -a PV4_3_pvOSPRay_linux_x86_64/* %(installdir)s/ && find %(installdir)s/ -type d -exec chmod 755 {} \; " - -sanity_check_paths = { - 'files': ['bin/paraview'], - 'dirs': ['bin', 'lib'], -} - -moduleclass = 'vis' diff --git a/p/Paraview/Paraview-5.0.0-foss-2015g.eb b/p/Paraview/Paraview-5.0.0-foss-2015g.eb deleted file mode 100644 index af9c558d..00000000 --- a/p/Paraview/Paraview-5.0.0-foss-2015g.eb +++ /dev/null @@ -1,54 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'ParaView' -version = '5.0.0' - -homepage = "http://www.paraview.org" -description = "ParaView is a scientific parallel visualizer." - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'pic': True, 'usempi': True} - -download_suffix = 'download.php?submit=Download&version=v%(version_major_minor)s&type=source&os=all&downloadFile=' -source_urls = [ - 'http://www.paraview.org/paraview-downloads/%s' % - download_suffix] -sources = ["ParaView-v%(version)s-source.tar.gz"] - -python = 'Python' -pyver = '2.7.9' -pysuff = '-%s-%s' % (python, pyver) -dependencies = [ - ('Mesa', '11.0.8', pysuff), - ('libGLU', '9.0.0'), - ('libXt', '1.1.5'), - ('Qt', '4.8.6'), - ('libXext', '1.3.3', pysuff), - ('libX11', '1.6.2', pysuff), - ('zlib', '1.2.8'), -] - -builddependencies = [('CMake', '3.3.1')] - -separate_build_dir = True - -maxparallel = 4 - -preconfigopts = 'export SOME_VAR=something && ' - -configopts = '-DPARAVIEW_INSTALL_DEVELOPMENT_FILES=ON -DVTK_OPENGL_HAS_OSMESA=ON ' -configopts += '-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include -DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.so ' -configopts += '-DOSMESA_INCLUDE_DIR=$EBROOTMESA/include -DOSMESA_LIBRARY=$EBROOTMESA/lib/libOSMesa.so ' -# Without internet connection turn off testing (uncomment the following line) -#configopts += '-DBUILD_TESTING=OFF ' -# Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md -# and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly -# Without internet connection, comment the following two lines (configopts -# and prebuildopts) -configopts += '-DExternalData_OBJECT_STORES=%(builddir)s/ExternalData ' -# The ParaView server can be cranky, test downloads are quite often failing, especially in the case -# of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the -# first serial attempt would fail. -prebuildopts = 'make VTKData ;' - -moduleclass = 'vis' diff --git a/p/Perl/Perl-5.16.3-intel-2015b.eb b/p/Perl/Perl-5.16.3-intel-2015b.eb deleted file mode 100644 index cfc288b9..00000000 --- a/p/Perl/Perl-5.16.3-intel-2015b.eb +++ /dev/null @@ -1,225 +0,0 @@ -name = 'Perl' -version = '5.16.3' - -homepage = 'http://www.perl.org/' -description = """Larry Wall's Practical Extraction and Report Language""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'optarch': True, 'pic': True} - -source_urls = ['http://www.cpan.org/src/5.0'] -sources = [SOURCELOWER_TAR_GZ] - -patches = ['exitcode_error.patch'] - -runtest = 'test' - -exts_list = [ - ('IO::String', '1.08', { - 'source_tmpl': 'IO-String-1.08.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], - }), - ('Data::Stag', '0.11', { - 'source_tmpl': 'Data-Stag-0.11.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL/'], - }), - ('DB_File', '1.827', { - 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PM/PMQS/'], - }), - ('DBI', '1.625', { - 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TI/TIMB/'], - }), - ('Bio::Perl', '1.6.901', { - 'source_tmpl': 'BioPerl-1.6.901.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/'], - 'patches': ['BioPerl_disable-broken-test.patch'], - }), - ('Sub::Uplevel', '0.24', { - 'source_tmpl': 'Sub-Uplevel-0.24.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], - }), - ('Tree::DAG_Node', '1.11', { - 'source_tmpl': 'Tree-DAG_Node-1.11.tgz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], - }), - ('Try::Tiny', '0.12', { - 'source_tmpl': 'Try-Tiny-0.12.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], - }), - ('Test::Fatal', '0.010', { - 'source_tmpl': 'Test-Fatal-0.010.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], - }), - ('Test::Exception', '0.31', { - 'source_tmpl': 'Test-Exception-0.31.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADIE/'], - }), - ('Test::Warn', '0.24', { - 'source_tmpl': 'Test-Warn-0.24.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], - }), - ('Test::Requires', '0.06', { - 'source_tmpl': 'Test-Requires-0.06.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM/'], - }), - ('Test::Tester', '0.108', { - 'source_tmpl': 'Test-Tester-0.108.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FD/FDALY/'], - }), - ('Params::Util', '1.07', { - 'source_tmpl': 'Params-Util-1.07.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], - }), - ('Sub::Install', '0.926', { - 'source_tmpl': 'Sub-Install-0.926.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], - }), - ('Data::OptList', '0.107', { - 'source_tmpl': 'Data-OptList-0.107.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], - }), - ('Sub::Exporter', '0.985', { - 'source_tmpl': 'Sub-Exporter-0.985.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], - }), - ('Test::Output', '1.01', { - 'source_tmpl': 'Test-Output-1.01.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BD/BDFOY/'], - }), - ('Module::Runtime', '0.013', { - 'source_tmpl': 'Module-Runtime-0.013.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/'], - }), - ('Module::Implementation', '0.06', { - 'source_tmpl': 'Module-Implementation-0.06.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], - }), - ('List::MoreUtils', '0.33', { - 'source_tmpl': 'List-MoreUtils-0.33.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], - }), - ('Package::DeprecationManager', '0.13', { - 'source_tmpl': 'Package-DeprecationManager-0.13.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], - }), - ('Dist::CheckConflicts', '0.02', { - 'source_tmpl': 'Dist-CheckConflicts-0.02.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], - }), - ('Package::Stash', '0.34', { - 'source_tmpl': 'Package-Stash-0.34.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], - }), - ('Class::Load', '0.20', { - 'source_tmpl': 'Class-Load-0.20.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], - }), - ('MRO::Compat', '0.12', { - 'source_tmpl': 'MRO-Compat-0.12.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BO/BOBTFISH/'], - }), - ('Sub::Name', '0.05', { - 'source_tmpl': 'Sub-Name-0.05.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FL/FLORA/'], - }), - ('Eval::Closure', '0.08', { - 'source_tmpl': 'Eval-Closure-0.08.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY/'], - }), - ('Sub::Exporter::Progressive', '0.001010', { - 'source_tmpl': 'Sub-Exporter-Progressive-0.001010.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW/'], - }), - ('Devel::GlobalDestruction', '0.11', { - 'source_tmpl': 'Devel-GlobalDestruction-0.11.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], - }), - ('boolean', '0.30', { - 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IN/INGY/'], - }), - ('Tie::IxHash', '1.23', { - 'source_tmpl': 'Tie-IxHash-1.23.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY/'], - }), - ('Moose', '2.0801', { - 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], - }), - ('Params::Validate', '1.07', { - 'source_tmpl': 'Params-Validate-1.07.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], - }), - ('DateTime::Locale', '0.45', { - 'source_tmpl': 'DateTime-Locale-0.45.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], - }), - ('Class::Singleton', '1.4', { - 'source_tmpl': 'Class-Singleton-1.4.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW/'], - }), - ('DateTime::TimeZone', '1.58', { - 'source_tmpl': 'DateTime-TimeZone-1.58.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], - }), - ('DateTime', '1.01', { - 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY/'], - }), - ('Data::Types', '0.09', { - 'source_tmpl': 'Data-Types-0.09.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DW/DWHEELER/'], - }), - ('DateTime::Tiny', '1.04', { - 'source_tmpl': 'DateTime-Tiny-1.04.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], - }), - ('File::Slurp', '9999.19', { - 'source_tmpl': 'File-Slurp-9999.19.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/U/UR/URI/'], - }), - ('HTTP::Date', '6.02', { - 'source_tmpl': 'HTTP-Date-6.02.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], - }), - ('IO::HTML', '1.00', { - 'source_tmpl': 'IO-HTML-1.00.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM/'], - }), - ('LWP::MediaTypes', '6.02', { - 'source_tmpl': 'LWP-MediaTypes-6.02.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], - }), - ('URI', '1.60', { - 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], - }), - ('HTTP::Request', '6.06', { - 'source_tmpl': 'HTTP-Message-6.06.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], - }), - ('HTML::Tagset', '3.20', { - 'source_tmpl': 'HTML-Tagset-3.20.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PETDANCE/'], - }), - ('HTML::Entities', '3.70', { - 'source_tmpl': 'HTML-Parser-3.70.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], - }), - ('AnyEvent', '7.04', { - 'source_urls': ['http://cpan.metacpan.org/authors/id/M/ML/MLEHMANN/'], - }), - ('Mouse', '1.05', { - 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GF/GFUJI/'], - }), - ('XML::NamespaceSupport', '1.11', { - 'source_tmpl': 'XML-NamespaceSupport-1.11.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/'], - }), - ('XML::SAX::Base', '1.08', { - 'source_tmpl': 'XML-SAX-Base-1.08.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], - }), - ('XML::SAX', '0.99', { - 'source_tmpl': 'XML-SAX-0.99.tar.gz', - 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], - }), -] - -moduleclass = 'lang' diff --git a/p/Perl/Perl-5.22.2-intel-2016a.eb b/p/Perl/Perl-5.22.2-intel-2016a.eb deleted file mode 100644 index c1290fa0..00000000 --- a/p/Perl/Perl-5.22.2-intel-2016a.eb +++ /dev/null @@ -1,886 +0,0 @@ -name = 'Perl' -version = '5.22.2' - -homepage = 'http://www.perl.org/' -description = """Larry Wall's Practical Extraction and Report Language""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'optarch': True, 'pic': True} - -source_urls = ['http://www.cpan.org/src/%(version_major)s.0'] -sources = [SOURCELOWER_TAR_GZ] - -exts_list = [ - ('Config::General', '2.61', { - 'source_tmpl': 'Config-General-2.61.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], - }), - ('File::Listing', '6.04', { - 'source_tmpl': 'File-Listing-6.04.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], - }), - ('ExtUtils::InstallPaths', '0.011', { - 'source_tmpl': 'ExtUtils-InstallPaths-0.011.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], - }), - ('ExtUtils::Helpers', '0.022', { - 'source_tmpl': 'ExtUtils-Helpers-0.022.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], - }), - ('Test::Harness', '3.36', { - 'source_tmpl': 'Test-Harness-3.36.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], - }), - ('ExtUtils::Config', '0.008', { - 'source_tmpl': 'ExtUtils-Config-0.008.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], - }), - ('Module::Build::Tiny', '0.039', { - 'source_tmpl': 'Module-Build-Tiny-0.039.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], - }), - ('aliased', '0.34', { - 'source_tmpl': 'aliased-0.34.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], - }), - ('Text::Glob', '0.09', { - 'source_tmpl': 'Text-Glob-0.09.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], - }), - ('Regexp::Common', '2016020301', { - 'source_tmpl': 'Regexp-Common-2016020301.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], - }), - ('GO::Utils', '0.15', { - 'source_tmpl': 'go-perl-0.15.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], - }), - ('Module::Pluggable', '5.2', { - 'source_tmpl': 'Module-Pluggable-5.2.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SI/SIMONW'], - }), - ('Test::Fatal', '0.014', { - 'source_tmpl': 'Test-Fatal-0.014.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], - }), - ('Test::Warnings', '0.026', { - 'source_tmpl': 'Test-Warnings-0.026.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], - }), - ('DateTime::Locale', '1.03', { - 'source_tmpl': 'DateTime-Locale-1.03.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], - }), - ('DateTime::TimeZone', '1.98', { - 'source_tmpl': 'DateTime-TimeZone-1.98.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], - }), - ('Test::Requires', '0.10', { - 'source_tmpl': 'Test-Requires-0.10.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM'], - }), - ('Module::Implementation', '0.09', { - 'source_tmpl': 'Module-Implementation-0.09.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], - }), - ('Module::Build', '0.4218', { - 'source_tmpl': 'Module-Build-0.4218.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], - }), - ('Module::Runtime', '0.014', { - 'source_tmpl': 'Module-Runtime-0.014.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM'], - }), - ('Try::Tiny', '0.24', { - 'source_tmpl': 'Try-Tiny-0.24.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], - }), - ('Params::Validate', '1.24', { - 'source_tmpl': 'Params-Validate-1.24.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], - }), - ('List::MoreUtils', '0.415', { - 'source_tmpl': 'List-MoreUtils-0.415.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], - }), - ('Exporter::Tiny', '0.042', { - 'source_tmpl': 'Exporter-Tiny-0.042.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOBYINK'], - }), - ('Class::Singleton', '1.5', { - 'source_tmpl': 'Class-Singleton-1.5.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], - }), - ('DateTime', '1.28', { - 'source_tmpl': 'DateTime-1.28.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], - }), - ('File::Find::Rule::Perl', '1.15', { - 'source_tmpl': 'File-Find-Rule-Perl-1.15.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], - }), - ('Readonly', '2.04', { - 'source_tmpl': 'Readonly-2.04.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SA/SANKO'], - }), - ('Git', '0.41', { - 'source_tmpl': 'Git-0.41.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSOUTH'], - }), - ('Tree::DAG_Node', '1.29', { - 'source_tmpl': 'Tree-DAG_Node-1.29.tgz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], - }), - ('Template', '2.26', { - 'source_tmpl': 'Template-Toolkit-2.26.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], - }), - ('FreezeThaw', '0.5001', { - 'source_tmpl': 'FreezeThaw-0.5001.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IL/ILYAZ/modules'], - }), - ('DBI', '1.636', { - 'source_tmpl': 'DBI-1.636.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], - }), - ('DBD::SQLite', '1.50', { - 'source_tmpl': 'DBD-SQLite-1.50.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], - }), - ('Math::Bezier', '0.01', { - 'source_tmpl': 'Math-Bezier-0.01.tar.gz', - 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}), - ('Data::Stag', '0.14', { - 'source_tmpl': 'Data-Stag-0.14.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], - }), - ('Test::NoWarnings', '1.04', { - 'source_tmpl': 'Test-NoWarnings-1.04.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], - }), - ('Crypt::DES', '2.07', { - 'source_tmpl': 'Crypt-DES-2.07.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DP/DPARIS'], - }), - ('Exporter', '5.72', { - 'source_tmpl': 'Exporter-5.72.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], - }), - ('Class::Inspector', '1.28', { - 'source_tmpl': 'Class-Inspector-1.28.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], - }), - ('Parse::RecDescent', '1.967013', { - 'source_tmpl': 'Parse-RecDescent-1.967013.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JT/JTBRAUN'], - }), - ('Carp', '1.38', { - 'source_tmpl': 'Carp-1.38.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], - }), - ('XML::XPath', '1.36', { - 'source_tmpl': 'XML-XPath-1.36.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MANWAR'], - }), - ('Capture::Tiny', '0.40', { - 'source_tmpl': 'Capture-Tiny-0.40.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], - }), - ('JSON', '2.90', { - 'source_tmpl': 'JSON-2.90.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA'], - }), - ('Sub::Exporter', '0.987', { - 'source_tmpl': 'Sub-Exporter-0.987.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], - }), - ('Class::Load::XS', '0.09', { - 'source_tmpl': 'Class-Load-XS-0.09.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], - }), - ('Set::IntSpan::Fast', '1.15', { - 'source_tmpl': 'Set-IntSpan-Fast-1.15.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AN/ANDYA'], - }), - ('Sub::Exporter::Progressive', '0.001011', { - 'source_tmpl': 'Sub-Exporter-Progressive-0.001011.tar.gz', - 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}), - ('Text::CSV', '1.33', { - 'source_tmpl': 'Text-CSV-1.33.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA'], - }), - ('Test::Output', '1.03', { - 'source_tmpl': 'Test-Output-1.03.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BD/BDFOY'], - }), - ('Class::DBI', '3.0.17', { - 'source_tmpl': 'Class-DBI-v3.0.17.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], - }), - ('List::AllUtils', '0.10', { - 'source_tmpl': 'List-AllUtils-0.10.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], - }), - ('UNIVERSAL::moniker', '0.08', { - 'source_tmpl': 'UNIVERSAL-moniker-0.08.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KASEI'], - }), - ('Exception::Class', '1.40', { - 'source_tmpl': 'Exception-Class-1.40.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], - }), - ('File::CheckTree', '4.42', { - 'source_tmpl': 'File-CheckTree-4.42.tar.gz', - 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}), - ('Data::Section::Simple', '0.07', { - 'source_tmpl': 'Data-Section-Simple-0.07.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], - }), - ('Class::Trigger', '0.14', { - 'source_tmpl': 'Class-Trigger-0.14.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], - }), - ('HTTP::Daemon', '6.01', { - 'source_tmpl': 'HTTP-Daemon-6.01.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], - }), - ('File::HomeDir', '1.00', { - 'source_tmpl': 'File-HomeDir-1.00.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], - }), - ('HTTP::Date', '6.02', { - 'source_tmpl': 'HTTP-Date-6.02.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], - }), - ('Authen::SASL', '2.16', { - 'source_tmpl': 'Authen-SASL-2.16.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], - }), - ('Clone', '0.38', { - 'source_tmpl': 'Clone-0.38.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GARU'], - }), - ('Data::Types', '0.09', { - 'source_tmpl': 'Data-Types-0.09.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DW/DWHEELER'], - }), - ('Import::Into', '1.002005', { - 'source_tmpl': 'Import-Into-1.002005.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], - }), - ('DateTime::Tiny', '1.04', { - 'source_tmpl': 'DateTime-Tiny-1.04.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], - }), - ('DBD::AnyData', '0.110', { - 'source_tmpl': 'DBD-AnyData-0.110.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], - }), - ('Text::Format', '0.59', { - 'source_tmpl': 'Text-Format-0.59.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], - }), - ('Devel::CheckCompiler', '0.06', { - 'source_tmpl': 'Devel-CheckCompiler-0.06.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], - }), - ('Log::Handler', '0.84', { - 'source_tmpl': 'Log-Handler-0.84.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BL/BLOONIX'], - }), - ('DBIx::ContextualFetch', '1.03', { - 'source_tmpl': 'DBIx-ContextualFetch-1.03.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], - }), - ('Devel::StackTrace', '2.01', { - 'source_tmpl': 'Devel-StackTrace-2.01.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], - }), - ('Term::ReadKey', '2.33', { - 'source_tmpl': 'TermReadKey-2.33.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JS/JSTOWE'], - }), - ('Set::IntSpan', '1.19', { - 'source_tmpl': 'Set-IntSpan-1.19.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SW/SWMCD'], - }), - ('Moose', '2.1801', { - 'source_tmpl': 'Moose-2.1801.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], - }), - ('Algorithm::Dependency', '1.110', { - 'source_tmpl': 'Algorithm-Dependency-1.110.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], - }), - ('Font::TTF', '1.05', { - 'source_tmpl': 'Font-TTF-1.05.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MH/MHOSKEN'], - }), - ('IPC::Run3', '0.048', { - 'source_tmpl': 'IPC-Run3-0.048.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], - }), - ('File::Find::Rule', '0.34', { - 'source_tmpl': 'File-Find-Rule-0.34.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], - }), - ('SQL::Statement', '1.410', { - 'source_tmpl': 'SQL-Statement-1.410.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], - }), - ('File::Slurp', '9999.19', { - 'source_tmpl': 'File-Slurp-9999.19.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/U/UR/URI'], - }), - ('Package::Stash', '0.37', { - 'source_tmpl': 'Package-Stash-0.37.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], - }), - ('Data::OptList', '0.110', { - 'source_tmpl': 'Data-OptList-0.110.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], - }), - ('CPANPLUS', '0.9160', { - 'source_tmpl': 'CPANPLUS-0.9160.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], - }), - ('IO::Tty', '1.12', { - 'source_tmpl': 'IO-Tty-1.12.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], - }), - ('Text::Soundex', '3.05', { - 'source_tmpl': 'Text-Soundex-3.05.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], - }), - ('Lingua::EN::PluralToSingular', '0.18', { - 'source_tmpl': 'Lingua-EN-PluralToSingular-0.18.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BK/BKB'], - }), - ('Want', '0.29', { - 'source_tmpl': 'Want-0.29.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN'], - }), - ('Cwd::Guard', '0.05', { - 'source_tmpl': 'Cwd-Guard-0.05.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], - }), - ('Bundle::BioPerl', '2.1.9', { - 'source_tmpl': 'Bundle-BioPerl-2.1.9.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], - }), - ('Mail::Util', '2.18', { - 'source_tmpl': 'MailTools-2.18.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], - }), -] -exts_list = [] - -moduleclass = 'lang' diff --git a/p/Perl/Perl-5.24.0-foss-2016b.eb b/p/Perl/Perl-5.24.0-foss-2016b.eb deleted file mode 100644 index 77e0aab0..00000000 --- a/p/Perl/Perl-5.24.0-foss-2016b.eb +++ /dev/null @@ -1,884 +0,0 @@ -name = 'Perl' -version = '5.24.0' - -homepage = 'http://www.perl.org/' -description = """Larry Wall's Practical Extraction and Report Language""" - -toolchain = {'name': 'foss', 'version': '2016b'} -toolchainopts = {'pic': True} - -source_urls = ['http://www.cpan.org/src/%(version_major)s.0'] -sources = [SOURCELOWER_TAR_GZ] - -exts_list = [ - ('Config::General', '2.61', { - 'source_tmpl': 'Config-General-2.61.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], - }), - ('File::Listing', '6.04', { - 'source_tmpl': 'File-Listing-6.04.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], - 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'source_tmpl': 'IPC-Run3-0.048.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], - }), - ('File::Find::Rule', '0.34', { - 'source_tmpl': 'File-Find-Rule-0.34.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], - }), - ('SQL::Statement', '1.410', { - 'source_tmpl': 'SQL-Statement-1.410.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], - }), - ('File::Slurp', '9999.19', { - 'source_tmpl': 'File-Slurp-9999.19.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/U/UR/URI'], - }), - ('Package::Stash', '0.37', { - 'source_tmpl': 'Package-Stash-0.37.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], - }), - ('Data::OptList', '0.110', { - 'source_tmpl': 'Data-OptList-0.110.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], - }), - ('CPANPLUS', '0.9160', { - 'source_tmpl': 'CPANPLUS-0.9160.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], - }), - ('IO::Tty', '1.12', { - 'source_tmpl': 'IO-Tty-1.12.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], - }), - ('Text::Soundex', '3.05', { - 'source_tmpl': 'Text-Soundex-3.05.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], - }), - ('Lingua::EN::PluralToSingular', '0.18', { - 'source_tmpl': 'Lingua-EN-PluralToSingular-0.18.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BK/BKB'], - }), - ('Want', '0.29', { - 'source_tmpl': 'Want-0.29.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN'], - }), - ('Cwd::Guard', '0.05', { - 'source_tmpl': 'Cwd-Guard-0.05.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], - }), - ('Bundle::BioPerl', '2.1.9', { - 'source_tmpl': 'Bundle-BioPerl-2.1.9.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], - }), - ('Mail::Util', '2.18', { - 'source_tmpl': 'MailTools-2.18.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], - }), -] - -moduleclass = 'lang' diff --git a/p/Perl/Perl-5.24.0-intel-2016b.eb b/p/Perl/Perl-5.24.0-intel-2016b.eb deleted file mode 100644 index 087478fa..00000000 --- a/p/Perl/Perl-5.24.0-intel-2016b.eb +++ /dev/null @@ -1,885 +0,0 @@ -name = 'Perl' -version = '5.24.0' - -homepage = 'http://www.perl.org/' -description = """Larry Wall's Practical Extraction and Report Language""" - -toolchain = {'name': 'intel', 'version': '2016b'} -toolchainopts = {'pic': True} - -source_urls = ['http://www.cpan.org/src/%(version_major)s.0'] -sources = [SOURCELOWER_TAR_GZ] - -exts_list = [ - ('Config::General', '2.61', { - 'source_tmpl': 'Config-General-2.61.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], - }), - ('File::Listing', '6.04', { - 'source_tmpl': 'File-Listing-6.04.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], - }), - ('ExtUtils::InstallPaths', '0.011', { - 'source_tmpl': 'ExtUtils-InstallPaths-0.011.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], - }), - ('ExtUtils::Helpers', '0.022', { - 'source_tmpl': 'ExtUtils-Helpers-0.022.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], - }), - ('Test::Harness', '3.36', { - 'source_tmpl': 'Test-Harness-3.36.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], - }), - ('ExtUtils::Config', '0.008', { - 'source_tmpl': 'ExtUtils-Config-0.008.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], - }), - ('Module::Build::Tiny', '0.039', { - 'source_tmpl': 'Module-Build-Tiny-0.039.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], - }), - ('aliased', '0.34', { - 'source_tmpl': 'aliased-0.34.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], - }), - ('Text::Glob', '0.09', { - 'source_tmpl': 'Text-Glob-0.09.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], - }), - ('Regexp::Common', '2016060801', { - 'source_tmpl': 'Regexp-Common-2016060801.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], - }), - ('GO::Utils', '0.15', { - 'source_tmpl': 'go-perl-0.15.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], - }), - ('Module::Pluggable', '5.2', { - 'source_tmpl': 'Module-Pluggable-5.2.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SI/SIMONW'], - }), - ('Test::Fatal', '0.014', { - 'source_tmpl': 'Test-Fatal-0.014.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], - }), - ('Test::Warnings', '0.026', { - 'source_tmpl': 'Test-Warnings-0.026.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], - }), - ('DateTime::Locale', '1.05', { - 'source_tmpl': 'DateTime-Locale-1.05.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], - }), - ('DateTime::TimeZone', '2.00', { - 'source_tmpl': 'DateTime-TimeZone-2.00.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], - }), - ('Test::Requires', '0.10', { - 'source_tmpl': 'Test-Requires-0.10.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM'], - }), - ('Module::Implementation', '0.09', { - 'source_tmpl': 'Module-Implementation-0.09.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], - }), - ('Module::Build', '0.4218', { - 'source_tmpl': 'Module-Build-0.4218.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], - }), - ('Module::Runtime', '0.014', { - 'source_tmpl': 'Module-Runtime-0.014.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM'], - }), - ('Try::Tiny', '0.24', { - 'source_tmpl': 'Try-Tiny-0.24.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], - }), - ('Params::Validate', '1.24', { - 'source_tmpl': 'Params-Validate-1.24.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], - }), - ('List::MoreUtils', '0.416', { - 'source_tmpl': 'List-MoreUtils-0.416.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], - }), - ('Exporter::Tiny', '0.042', { - 'source_tmpl': 'Exporter-Tiny-0.042.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOBYINK'], - }), - ('Class::Singleton', '1.5', { - 'source_tmpl': 'Class-Singleton-1.5.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], - }), - ('DateTime', '1.34', { - 'source_tmpl': 'DateTime-1.34.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], - }), - ('File::Find::Rule::Perl', '1.15', { - 'source_tmpl': 'File-Find-Rule-Perl-1.15.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], - }), - ('Readonly', '2.05', { - 'source_tmpl': 'Readonly-2.05.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SA/SANKO'], - }), - ('Git', '0.41', { - 'source_tmpl': 'Git-0.41.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSOUTH'], - }), - ('Tree::DAG_Node', '1.29', { - 'source_tmpl': 'Tree-DAG_Node-1.29.tgz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], - }), - ('Template', '2.26', { - 'source_tmpl': 'Template-Toolkit-2.26.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], - }), - ('FreezeThaw', '0.5001', { - 'source_tmpl': 'FreezeThaw-0.5001.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IL/ILYAZ/modules'], - }), - ('DBI', '1.636', { - 'source_tmpl': 'DBI-1.636.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], - }), - ('DBD::SQLite', '1.50', { - 'source_tmpl': 'DBD-SQLite-1.50.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], - }), - ('Math::Bezier', '0.01', { - 'source_tmpl': 'Math-Bezier-0.01.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AB/ABW'], - }), - ('Archive::Extract', '0.76', { - 'source_tmpl': 'Archive-Extract-0.76.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], - }), - ('DBIx::Simple', '1.35', { - 'source_tmpl': 'DBIx-Simple-1.35.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JU/JUERD'], - }), - ('Shell', '0.73', { - 'source_tmpl': 'Shell-0.73.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/F/FE/FERREIRA'], - }), - ('File::Spec', '3.62', { - 'source_tmpl': 'PathTools-3.62.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], - }), - ('ExtUtils::MakeMaker', '7.18', { - 'source_tmpl': 'ExtUtils-MakeMaker-7.18.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], - }), - ('Test::Simple', '1.302037', { - 'source_tmpl': 'Test-Simple-1.302037.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], - }), - ('Set::Scalar', '1.29', { - 'source_tmpl': 'Set-Scalar-1.29.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAVIDO'], - }), - ('IO::Stringy', '2.111', { - 'source_tmpl': 'IO-stringy-2.111.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], - }), - ('Encode::Locale', '1.05', { - 'source_tmpl': 'Encode-Locale-1.05.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], - }), - ('XML::SAX::Base', '1.08', { - 'source_tmpl': 'XML-SAX-Base-1.08.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], - }), - ('XML::NamespaceSupport', '1.11', { - 'source_tmpl': 'XML-NamespaceSupport-1.11.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], - }), - ('XML::SAX', '0.99', { - 'source_tmpl': 'XML-SAX-0.99.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GRANTM'], - }), - ('Test::LeakTrace', '0.15', { - 'source_tmpl': 'Test-LeakTrace-0.15.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GF/GFUJI'], - }), - ('Test::Exception', '0.43', { - 'source_tmpl': 'Test-Exception-0.43.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], - }), - ('Text::Table', '1.130', { - 'source_tmpl': 'Text-Table-1.130.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], - }), - ('MIME::Types', '2.13', { - 'source_tmpl': 'MIME-Types-2.13.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], - }), - ('Module::Build::XSUtil', '0.16', { - 'source_tmpl': 'Module-Build-XSUtil-0.16.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HI/HIDEAKIO'], - }), - ('Tie::Function', '0.02', { - 'source_tmpl': 'Tie-Function-0.02.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAVIDNICO/handy_tied_functions'], - }), - ('Template::Plugin::Number::Format', '1.06', { - 'source_tmpl': 'Template-Plugin-Number-Format-1.06.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DARREN'], - }), - ('HTML::Parser', '3.72', { - 'source_tmpl': 'HTML-Parser-3.72.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], - }), - ('Date::Handler', '1.2', { - 'source_tmpl': 'Date-Handler-1.2.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BB/BBEAUSEJ'], - }), - ('Params::Util', '1.07', { - 'source_tmpl': 'Params-Util-1.07.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], - }), - ('IO::HTML', '1.001', { - 'source_tmpl': 'IO-HTML-1.001.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJM'], - }), - ('Data::Grove', '0.08', { - 'source_tmpl': 'libxml-perl-0.08.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KM/KMACLEOD'], - }), - ('Class::ISA', '0.36', { - 'source_tmpl': 'Class-ISA-0.36.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SM/SMUELLER'], - }), - ('URI', '1.71', { - 'source_tmpl': 'URI-1.71.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], - }), - ('Ima::DBI', '0.35', { - 'source_tmpl': 'Ima-DBI-0.35.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERRIN'], - }), - ('Tie::IxHash', '1.23', { - 'source_tmpl': 'Tie-IxHash-1.23.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CH/CHORNY'], - }), - ('GO', '0.04', { - 'source_tmpl': 'go-db-perl-0.04.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SJ/SJCARBON'], - }), - ('Class::DBI::SQLite', '0.11', { - 'source_tmpl': 'Class-DBI-SQLite-0.11.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], - }), - ('Pod::POM', '2.01', { - 'source_tmpl': 'Pod-POM-2.01.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], - }), - ('Math::Round', '0.07', { - 'source_tmpl': 'Math-Round-0.07.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GROMMEL'], - }), - ('Text::Diff', '1.44', { - 'source_tmpl': 'Text-Diff-1.44.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], - }), - ('Log::Message::Simple', '0.10', { - 'source_tmpl': 'Log-Message-Simple-0.10.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], - }), - ('IO::Socket::SSL', '2.029', { - 'source_tmpl': 'IO-Socket-SSL-2.029.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SU/SULLR'], - }), - ('Fennec::Lite', '0.004', { - 'source_tmpl': 'Fennec-Lite-0.004.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], - }), - ('Sub::Uplevel', '0.25', { - 'source_tmpl': 'Sub-Uplevel-0.25.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], - }), - ('Meta::Builder', '0.003', { - 'source_tmpl': 'Meta-Builder-0.003.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], - }), - ('Exporter::Declare', '0.114', { - 'source_tmpl': 'Exporter-Declare-0.114.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], - }), - ('Getopt::Long', '2.48', { - 'source_tmpl': 'Getopt-Long-2.48.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JV/JV'], - }), - ('Log::Message', '0.08', { - 'source_tmpl': 'Log-Message-0.08.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], - }), - ('Mouse', 'v2.4.5', { - 'source_tmpl': 'Mouse-v2.4.5.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], - }), - ('Test::Version', '2.04', { - 'source_tmpl': 'Test-Version-2.04.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], - }), - ('DBIx::Admin::TableInfo', '3.01', { - 'source_tmpl': 'DBIx-Admin-TableInfo-3.01.tgz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], - }), - ('Net::HTTP', '6.09', { - 'source_tmpl': 'Net-HTTP-6.09.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], - }), - ('Test::Deep', '1.120', { - 'source_tmpl': 'Test-Deep-1.120.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], - }), - ('Test::Warn', '0.30', { - 'source_tmpl': 'Test-Warn-0.30.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CH/CHORNY'], - }), - ('MRO::Compat', '0.12', { - 'source_tmpl': 'MRO-Compat-0.12.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BO/BOBTFISH'], - }), - ('Moo', '2.002004', { - 'source_tmpl': 'Moo-2.002004.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], - 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}), - ('File::HomeDir', '1.00', { - 'source_tmpl': 'File-HomeDir-1.00.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], - }), - ('HTTP::Date', '6.02', { - 'source_tmpl': 'HTTP-Date-6.02.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], - }), - ('Authen::SASL', '2.16', { - 'source_tmpl': 'Authen-SASL-2.16.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GB/GBARR'], - }), - ('Clone', '0.38', { - 'source_tmpl': 'Clone-0.38.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GARU'], - }), - ('Data::Types', '0.09', { - 'source_tmpl': 'Data-Types-0.09.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DW/DWHEELER'], - }), - ('Import::Into', '1.002005', { - 'source_tmpl': 'Import-Into-1.002005.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], - }), - ('DateTime::Tiny', '1.06', { - 'source_tmpl': 'DateTime-Tiny-1.06.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], - }), - ('DBD::AnyData', '0.110', { - 'source_tmpl': 'DBD-AnyData-0.110.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], - }), - ('Text::Format', '0.59', { - 'source_tmpl': 'Text-Format-0.59.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], - }), - ('Devel::CheckCompiler', '0.06', { - 'source_tmpl': 'Devel-CheckCompiler-0.06.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], - }), - ('Log::Handler', '0.84', { - 'source_tmpl': 'Log-Handler-0.84.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BL/BLOONIX'], - }), - ('DBIx::ContextualFetch', '1.03', { - 'source_tmpl': 'DBIx-ContextualFetch-1.03.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TM/TMTM'], - }), - ('Devel::StackTrace', '2.01', { - 'source_tmpl': 'Devel-StackTrace-2.01.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], - }), - ('Term::ReadKey', '2.33', { - 'source_tmpl': 'TermReadKey-2.33.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JS/JSTOWE'], - }), - ('Set::IntSpan', '1.19', { - 'source_tmpl': 'Set-IntSpan-1.19.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SW/SWMCD'], - }), - ('Moose', '2.1804', { - 'source_tmpl': 'Moose-2.1804.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], - }), - ('Algorithm::Dependency', '1.110', { - 'source_tmpl': 'Algorithm-Dependency-1.110.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/A/AD/ADAMK'], - }), - ('Font::TTF', '1.05', { - 'source_tmpl': 'Font-TTF-1.05.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MH/MHOSKEN'], - }), - ('IPC::Run3', '0.048', { - 'source_tmpl': 'IPC-Run3-0.048.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], - }), - ('File::Find::Rule', '0.34', { - 'source_tmpl': 'File-Find-Rule-0.34.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], - }), - ('SQL::Statement', '1.410', { - 'source_tmpl': 'SQL-Statement-1.410.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], - }), - ('File::Slurp', '9999.19', { - 'source_tmpl': 'File-Slurp-9999.19.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/U/UR/URI'], - }), - ('Package::Stash', '0.37', { - 'source_tmpl': 'Package-Stash-0.37.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], - }), - ('Data::OptList', '0.110', { - 'source_tmpl': 'Data-OptList-0.110.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], - }), - ('CPANPLUS', '0.9160', { - 'source_tmpl': 'CPANPLUS-0.9160.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], - }), - ('IO::Tty', '1.12', { - 'source_tmpl': 'IO-Tty-1.12.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], - }), - ('Text::Soundex', '3.05', { - 'source_tmpl': 'Text-Soundex-3.05.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], - }), - ('Lingua::EN::PluralToSingular', '0.18', { - 'source_tmpl': 'Lingua-EN-PluralToSingular-0.18.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BK/BKB'], - }), - ('Want', '0.29', { - 'source_tmpl': 'Want-0.29.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN'], - }), - ('Cwd::Guard', '0.05', { - 'source_tmpl': 'Cwd-Guard-0.05.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], - }), - ('Bundle::BioPerl', '2.1.9', { - 'source_tmpl': 'Bundle-BioPerl-2.1.9.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], - }), - ('Mail::Util', '2.18', { - 'source_tmpl': 'MailTools-2.18.tar.gz', - 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], - }), -] - -moduleclass = 'lang' diff --git a/p/Pillow/Pillow-3.2.0-intel-2016a-Python-2.7.11.eb b/p/Pillow/Pillow-3.2.0-intel-2016a-Python-2.7.11.eb deleted file mode 100644 index e08e25c6..00000000 --- a/p/Pillow/Pillow-3.2.0-intel-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,26 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'Pillow' -version = '3.2.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://pillow.readthedocs.org/' -description = """Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. - PIL is the Python Imaging Library by Fredrik Lundh and Contributors.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = [PYPI_SOURCE] -sources = [SOURCE_TAR_GZ] - -dependencies = [ - ('Python', '2.7.11'), - ('libjpeg-turbo', '1.4.2'), - ('zlib', '1.2.8'), - ('LibTIFF', '4.0.6'), - ('freetype', '2.6.2'), -] - -options = {'modulename': 'PIL'} - -moduleclass = 'vis' diff --git a/p/PostgreSQL/PostgreSQL-9.4.7-intel-2016a-Python-2.7.11.eb b/p/PostgreSQL/PostgreSQL-9.4.7-intel-2016a-Python-2.7.11.eb deleted file mode 100644 index c337343f..00000000 --- a/p/PostgreSQL/PostgreSQL-9.4.7-intel-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,49 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'PostgreSQL' -version = '9.4.7' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.mysql.com/' -description = """PostgreSQL is a powerful, open source object-relational database system. - It is fully ACID compliant, has full support for foreign keys, - joins, views, triggers, and stored procedures (in multiple languages). - It includes most SQL:2008 data types, including INTEGER, - NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. - It also supports storage of binary large objects, including pictures, - sounds, or video. It has native programming interfaces for C/C++, Java, - .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.""" - -source_urls = ['http://ftp.postgresql.org/pub/source/v%(version)s/'] -sources = [SOURCELOWER_TAR_GZ] - -toolchain = {'name': 'intel', 'version': '2016a'} - -osdependencies = [('openssl-devel', 'libssl-dev')] - -dependencies = [ - ('libreadline', '6.3'), - ('zlib', '1.2.8'), - ('Python', '2.7.11'), - # ('OpenSSL', '1.0.1i'), # OS dependency should be preferred for security reasons -] - -builddependencies = [ - ('Bison', '3.0.4'), - ('flex', '2.6.0'), - ('Perl', '5.22.1'), -] - -configopts = '--with-python --with-openssl' - -sanity_check_paths = { - 'files': [ - 'bin/psql', - 'bin/pg_config', - 'lib/libpq.a', - 'lib/libpq.%s' % - SHLIB_EXT], - 'dirs': ['share/postgresql'], -} - -moduleclass = 'data' diff --git a/p/PostgreSQL/PostgreSQL-9.5.2-intel-2016a-Python-2.7.11.eb b/p/PostgreSQL/PostgreSQL-9.5.2-intel-2016a-Python-2.7.11.eb deleted file mode 100644 index e85593e9..00000000 --- a/p/PostgreSQL/PostgreSQL-9.5.2-intel-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,49 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'PostgreSQL' -version = '9.5.2' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.mysql.com/' -description = """PostgreSQL is a powerful, open source object-relational database system. - It is fully ACID compliant, has full support for foreign keys, - joins, views, triggers, and stored procedures (in multiple languages). - It includes most SQL:2008 data types, including INTEGER, - NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. - It also supports storage of binary large objects, including pictures, - sounds, or video. It has native programming interfaces for C/C++, Java, - .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.""" - -source_urls = ['http://ftp.postgresql.org/pub/source/v%(version)s/'] -sources = [SOURCELOWER_TAR_GZ] - -toolchain = {'name': 'intel', 'version': '2016a'} - -osdependencies = [('openssl-devel', 'libssl-dev')] - -dependencies = [ - ('libreadline', '6.3'), - ('zlib', '1.2.8'), - ('Python', '2.7.11'), - # ('OpenSSL', '1.0.1i'), # OS dependency should be preferred for security reasons -] - -builddependencies = [ - ('Bison', '3.0.4'), - ('flex', '2.6.0'), - ('Perl', '5.22.1'), -] - -configopts = '--with-python --with-openssl' - -sanity_check_paths = { - 'files': [ - 'bin/psql', - 'bin/pg_config', - 'lib/libpq.a', - 'lib/libpq.%s' % - SHLIB_EXT], - 'dirs': ['share/postgresql'], -} - -moduleclass = 'data' diff --git a/p/PostgreSQL/PostgreSQL-9.6.0-intel-2016b-Python-2.7.12.eb b/p/PostgreSQL/PostgreSQL-9.6.0-intel-2016b-Python-2.7.12.eb deleted file mode 100644 index a74743c0..00000000 --- a/p/PostgreSQL/PostgreSQL-9.6.0-intel-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,49 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'PostgreSQL' -version = '9.6.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.mysql.com/' -description = """PostgreSQL is a powerful, open source object-relational database system. - It is fully ACID compliant, has full support for foreign keys, - joins, views, triggers, and stored procedures (in multiple languages). - It includes most SQL:2008 data types, including INTEGER, - NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. - It also supports storage of binary large objects, including pictures, - sounds, or video. It has native programming interfaces for C/C++, Java, - .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.""" - -source_urls = ['http://ftp.postgresql.org/pub/source/v%(version)s/'] -sources = [SOURCELOWER_TAR_GZ] - -toolchain = {'name': 'intel', 'version': '2016b'} - -osdependencies = [('openssl-devel', 'libssl-dev')] - -dependencies = [ - ('libreadline', '6.3'), - ('zlib', '1.2.8'), - ('Python', '2.7.12'), - # ('OpenSSL', '1.0.1i'), # OS dependency should be preferred for security reasons -] - -builddependencies = [ - ('Bison', '3.0.4'), - ('flex', '2.6.0'), - ('Perl', '5.24.0'), -] - -configopts = '--with-python --with-openssl' - -sanity_check_paths = { - 'files': [ - 'bin/psql', - 'bin/pg_config', - 'lib/libpq.a', - 'lib/libpq.%s' % - SHLIB_EXT], - 'dirs': ['share/postgresql'], -} - -moduleclass = 'data' diff --git a/p/Postgres-XL/Postgres-XL-9.5r1-intel-2016a-Python-2.7.11.eb b/p/Postgres-XL/Postgres-XL-9.5r1-intel-2016a-Python-2.7.11.eb deleted file mode 100644 index 647c128c..00000000 --- a/p/Postgres-XL/Postgres-XL-9.5r1-intel-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,43 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Postgres-XL' -version = '9.5r1' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.postgres-xl.org' -description = """Postgres-XL is a horizontally scalable open source SQL database cluster, -flexible enough to handle varying database workloads:""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = ['http://files.postgres-xl.org'] - -osdependencies = [('openssl-devel', 'libssl-dev')] - -dependencies = [ - ('libreadline', '6.3'), - ('zlib', '1.2.8'), - ('Python', '2.7.11'), - # ('OpenSSL', '1.0.1i'), # OS dependency should be preferred for security reasons -] - -builddependencies = [ - ('Bison', '3.0.4'), - ('flex', '2.6.0'), - ('Perl', '5.22.1'), -] - -configopts = '--with-python --with-openssl' - -sanity_check_paths = { - 'files': [ - 'bin/psql', - 'bin/pg_config', - 'lib/libpq.a', - 'lib/libpq.%s' % - SHLIB_EXT], - 'dirs': ['share/postgresql'], -} - -moduleclass = 'data' diff --git a/p/PyGTS/PyGTS-0.3.1-foss-2016a-Python-2.7.11.eb b/p/PyGTS/PyGTS-0.3.1-foss-2016a-Python-2.7.11.eb deleted file mode 100644 index b293f24d..00000000 --- a/p/PyGTS/PyGTS-0.3.1-foss-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'PyGTS' -version = '0.3.1' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://sourceforge.net/projects/pygts/' -description = """ PyGTS is a python package used to construct, manipulate, - and perform computations on triangulated surfaces. - It is a hand-crafted and pythonic binding for the GNU Triangulated Surface (GTS) Library. """ - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [ - ('Python', '2.7.11'), - ('GLib', '2.48.0'), - ('GTS', '0.7.6'), -] - -options = {'modulename': 'gts'} - -sanity_check_paths = { - 'files': [ - 'lib/python%%(pyshortver)s/site-packages/gts/_gts.%s' % - SHLIB_EXT], 'dirs': [], } - -moduleclass = 'vis' diff --git a/p/PyGTS/PyGTS-0.3.1-foss-2016b-Python-2.7.12.eb b/p/PyGTS/PyGTS-0.3.1-foss-2016b-Python-2.7.12.eb deleted file mode 100644 index b980caf3..00000000 --- a/p/PyGTS/PyGTS-0.3.1-foss-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'PyGTS' -version = '0.3.1' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://sourceforge.net/projects/pygts/' -description = """ PyGTS is a python package used to construct, manipulate, - and perform computations on triangulated surfaces. - It is a hand-crafted and pythonic binding for the GNU Triangulated Surface (GTS) Library. """ - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [ - ('Python', '2.7.12'), - ('GLib', '2.49.5'), - ('GTS', '0.7.6'), -] - -options = {'modulename': 'gts'} - -sanity_check_paths = { - 'files': [ - 'lib/python%%(pyshortver)s/site-packages/gts/_gts.%s' % - SHLIB_EXT], 'dirs': [], } - -moduleclass = 'vis' diff --git a/p/PyGTS/PyGTS-0.3.1-intel-2016a-Python-2.7.11.eb b/p/PyGTS/PyGTS-0.3.1-intel-2016a-Python-2.7.11.eb deleted file mode 100644 index b53ab716..00000000 --- a/p/PyGTS/PyGTS-0.3.1-intel-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'PyGTS' -version = '0.3.1' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://sourceforge.net/projects/pygts/' -description = """ PyGTS is a python package used to construct, manipulate, - and perform computations on triangulated surfaces. - It is a hand-crafted and pythonic binding for the GNU Triangulated Surface (GTS) Library. """ - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [ - ('Python', '2.7.11'), - ('GLib', '2.48.0'), - ('GTS', '0.7.6'), -] - -options = {'modulename': 'gts'} - -sanity_check_paths = { - 'files': [ - 'lib/python%%(pyshortver)s/site-packages/gts/_gts.%s' % - SHLIB_EXT], 'dirs': [], } - -moduleclass = 'vis' diff --git a/p/PyGTS/PyGTS-0.3.1-intel-2016b-Python-2.7.12.eb b/p/PyGTS/PyGTS-0.3.1-intel-2016b-Python-2.7.12.eb deleted file mode 100644 index 99e6ff7b..00000000 --- a/p/PyGTS/PyGTS-0.3.1-intel-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'PyGTS' -version = '0.3.1' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://sourceforge.net/projects/pygts/' -description = """ PyGTS is a python package used to construct, manipulate, - and perform computations on triangulated surfaces. - It is a hand-crafted and pythonic binding for the GNU Triangulated Surface (GTS) Library. """ - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [ - ('Python', '2.7.12'), - ('GLib', '2.49.5'), - ('GTS', '0.7.6'), -] - -options = {'modulename': 'gts'} - -sanity_check_paths = { - 'files': [ - 'lib/python%%(pyshortver)s/site-packages/gts/_gts.%s' % - SHLIB_EXT], 'dirs': [], } - -moduleclass = 'vis' diff --git a/p/PyQt/PyQt-4.11.3-foss-2015g-Python-2.7.9.eb b/p/PyQt/PyQt-4.11.3-foss-2015g-Python-2.7.9.eb deleted file mode 100644 index b947cd5f..00000000 --- a/p/PyQt/PyQt-4.11.3-foss-2015g-Python-2.7.9.eb +++ /dev/null @@ -1,42 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Bart Verleye -# Center for eResearch, Auckland -easyblock = 'ConfigureMakePythonPackage' - -name = 'PyQt' -version = '4.11.3' - -homepage = 'http://www.riverbankcomputing.co.uk/software/pyqt' -description = """PyQt is a set of Python v2 and v3 bindings for Digia's Qt application framework.""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -sources = ['%(name)s-x11-gpl-%(version)s.tar.gz'] -source_urls = [ - 'http://sourceforge.net/projects/pyqt/files/PyQt4/PyQt-%(version)s'] - -python = 'Python' -pyver = '2.7.9' -pythonshortver = '.'.join(pyver.split('.')[:2]) -versionsuffix = '-%s-%s' % (python, pyver) - -dependencies = [ - (python, pyver), - ('SIP', '4.16.4', versionsuffix), - ('Qt', '4.8.6'), -] - -configopts = "configure-ng.py --confirm-license" -configopts += " --destdir=%%(installdir)s/lib/python%s/site-packages " % pythonshortver -configopts += " --no-sip-files" - -options = {'modulename': 'PyQt4'} - -modextrapaths = {'PYTHONPATH': 'lib/python%s/site-packages' % pythonshortver} - -sanity_check_paths = { - 'files': ['lib/python2.7/site-packages/PyQt4/Qt.so'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/p/PyQt/PyQt-4.11.4-foss-2015g-Python-2.7.9.eb b/p/PyQt/PyQt-4.11.4-foss-2015g-Python-2.7.9.eb deleted file mode 100644 index a48bb8f3..00000000 --- a/p/PyQt/PyQt-4.11.4-foss-2015g-Python-2.7.9.eb +++ /dev/null @@ -1,42 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Bart Verleye -# Center for eResearch, Auckland -easyblock = 'ConfigureMakePythonPackage' - -name = 'PyQt' -version = '4.11.4' - -homepage = 'http://www.riverbankcomputing.co.uk/software/pyqt' -description = """PyQt is a set of Python v2 and v3 bindings for Digia's Qt application framework.""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -sources = ['%(name)s-x11-gpl-%(version)s.tar.gz'] -source_urls = [ - 'http://sourceforge.net/projects/pyqt/files/PyQt4/PyQt-%(version)s'] - -python = 'Python' -pyver = '2.7.9' -pythonshortver = '.'.join(pyver.split('.')[:2]) -versionsuffix = '-%s-%s' % (python, pyver) - -dependencies = [ - (python, pyver), - ('SIP', '4.17', versionsuffix), - ('Qt', '4.8.6'), -] - -configopts = "configure-ng.py --confirm-license" -configopts += " --destdir=%%(installdir)s/lib/python%s/site-packages " % pythonshortver -configopts += " --qsci-api" - -options = {'modulename': 'PyQt4'} - -modextrapaths = {'PYTHONPATH': 'lib/python%s/site-packages' % pythonshortver} - -sanity_check_paths = { - 'files': ['lib/python2.7/site-packages/PyQt4/Qt.so'], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/p/PyYAML/PyYAML-3.11-intel-2015b-Python-2.7.9.eb b/p/PyYAML/PyYAML-3.11-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index f011d87e..00000000 --- a/p/PyYAML/PyYAML-3.11-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = "PythonPackage" - -name = "PyYAML" -version = "3.11" - -homepage = "https://pypi.python.org/pypi/PyYAML/" -description = """PyYAML is a YAML parser and emitter for the Python programming language.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = [PYPI_SOURCE] -sources = [SOURCE_TAR_GZ] - -python = "Python" -pythonversion = "2.7.9" -py_short_ver = ".".join(pythonversion.split(".")[0:2]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - -dependencies = [ - (python, pythonversion), - ('libyaml', '0.1.6'), -] - -options = {'modulename': 'yaml'} - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%s/site-packages/yaml' % py_short_ver], -} - -moduleclass = 'lib' diff --git a/p/Python/Python-2.7.10-foss-2015a.eb b/p/Python/Python-2.7.10-foss-2015a.eb deleted file mode 100644 index 2110e248..00000000 --- a/p/Python/Python-2.7.10-foss-2015a.eb +++ /dev/null @@ -1,120 +0,0 @@ -name = 'Python' -version = '2.7.10' - -homepage = 'http://python.org/' -description = """Python is a programming language that lets you work more quickly and integrate your systems - more effectively.""" - -toolchain = {'name': 'foss', 'version': '2015a'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.9.2' -scipyversion = '0.15.1' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.8.10.2'), - ('Tk', '8.6.4', '-no-X11'), - ('GMP', '6.0.0a', '', ('GCC', '4.9.2')), # required for pycrypto - # ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated May 28th 2015 -exts_list = [ - ('setuptools', '16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '7.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': ['numpy-1.8.0-mkl.patch'], - }), - ('scipy', scipyversion, { - 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.3.0', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), - ('pbr', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.10.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.22', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.9.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '3.4.2', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.0.2', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.15.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.3', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.14', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('mock', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], - }), - ('pytz', '2015.4', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), - ('pandas', '0.16.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-2.7.10-foss-2015b.eb b/p/Python/Python-2.7.10-foss-2015b.eb deleted file mode 100644 index 76db705e..00000000 --- a/p/Python/Python-2.7.10-foss-2015b.eb +++ /dev/null @@ -1,120 +0,0 @@ -name = 'Python' -version = '2.7.10' - -homepage = 'http://python.org/' -description = """Python is a programming language that lets you work more quickly and integrate your systems - more effectively.""" - -toolchain = {'name': 'foss', 'version': '2015b'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.9.2' -scipyversion = '0.15.1' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.8.10.2'), - ('Tk', '8.6.4', '-no-X11'), - ('GMP', '6.0.0a', '', ('GNU', '4.9.3-2.25')), # required for pycrypto - # ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated May 28th 2015 -exts_list = [ - ('setuptools', '16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '7.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': ['numpy-1.8.0-mkl.patch'], - }), - ('scipy', scipyversion, { - 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.3.0', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), - ('pbr', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.10.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.22', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.9.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '3.4.2', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.0.2', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.15.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.3', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.14', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('mock', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], - }), - ('pytz', '2015.4', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), - ('pandas', '0.16.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-2.7.10-intel-2015a.eb b/p/Python/Python-2.7.10-intel-2015a.eb deleted file mode 100644 index 2661d5c9..00000000 --- a/p/Python/Python-2.7.10-intel-2015a.eb +++ /dev/null @@ -1,120 +0,0 @@ -name = 'Python' -version = '2.7.10' - -homepage = 'http://python.org/' -description = """Python is a programming language that lets you work more quickly and integrate your systems - more effectively.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.9.2' -scipyversion = '0.15.1' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.8.10.2'), - ('Tk', '8.6.4', '-no-X11'), - ('GMP', '6.0.0a', '', ('GCC', '4.9.2')), # required for pycrypto - # ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated May 28th 2015 -exts_list = [ - ('setuptools', '16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '7.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': ['numpy-1.8.0-mkl.patch'], - }), - ('scipy', scipyversion, { - 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.3.0', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), - ('pbr', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.10.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.22', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.9.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '3.4.2', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.0.2', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.15.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.3', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.14', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('mock', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], - }), - ('pytz', '2015.4', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), - ('pandas', '0.16.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-2.7.10-intel-2015b.eb b/p/Python/Python-2.7.10-intel-2015b.eb deleted file mode 100644 index 94c61afa..00000000 --- a/p/Python/Python-2.7.10-intel-2015b.eb +++ /dev/null @@ -1,119 +0,0 @@ -name = 'Python' -version = '2.7.10' - -homepage = 'http://python.org/' -description = """Python is a programming language that lets you work more quickly and integrate your systems - more effectively.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.9.2' -scipyversion = '0.15.1' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.8.10.2'), - ('Tk', '8.6.4', '-no-X11'), - # ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated May 28th 2015 -exts_list = [ - ('setuptools', '16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '7.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': ['numpy-1.8.0-mkl.patch'], - }), - ('scipy', scipyversion, { - 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.3.0', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), - ('pbr', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.10.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.22', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.9.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '3.4.2', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.0.2', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.15.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.3', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.14', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('mock', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], - }), - ('pytz', '2015.4', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), - ('pandas', '0.16.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-2.7.11-foss-2015a.eb b/p/Python/Python-2.7.11-foss-2015a.eb deleted file mode 100644 index 0f7b64a2..00000000 --- a/p/Python/Python-2.7.11-foss-2015a.eb +++ /dev/null @@ -1,142 +0,0 @@ -name = 'Python' -version = '2.7.11' - -homepage = 'http://python.org/' -description = """Python is a programming language that lets you work more quickly and integrate your systems - more effectively.""" - -toolchain = {'name': 'foss', 'version': '2015a'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.10.1' -scipyversion = '0.16.1' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.10.0'), - ('Tk', '8.6.4', '-no-X11'), - ('GMP', '6.1.0'), # required for pycrypto - # ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated May 28th 2015 -exts_list = [ - ('setuptools', '18.7.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '7.1.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.7', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': ['numpy-1.8.0-mkl.patch'], - }), - ('scipy', scipyversion, { - 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.4.0', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), - ('pbr', '1.8.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.12.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.23.4', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '4.0.4', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.1.0', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.6', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.18', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('funcsigs', '0.4', { - 'source_urls': ['https://pypi.python.org/packages/source/f/funcsigs'], - }), - ('mock', '1.3.0', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], - }), - ('pytz', '2015.7', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), - ('pandas', '0.17.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), - ('enum34', '1.1.2', { - 'modulename': 'enum', - 'source_urls': ['https://pypi.python.org/packages/source/e/enum34'], - }), -<< << << < HEAD - ('bitstring', '3.1.4', { - 'source_tmpl': '%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/b/bitstring'], -== == == = - ('bitstring', '3.1.3', { - # grab tarball from GitHub rather than PyPi since 3.1.3 release on PyPi disappeared; - # cfr. https://github.com/scott-griffiths/bitstring/issues/159 - 'source_tmpl': '%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://github.com/scott-griffiths/bitstring/archive/'], ->>>>>> > hpcugent / master - }), - ('virtualenv', '14.0.5', { - 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], - }), -] - -moduleclass='lang' diff --git a/p/Python/Python-2.7.11-foss-2016a.eb b/p/Python/Python-2.7.11-foss-2016a.eb deleted file mode 100644 index 6d86f2c5..00000000 --- a/p/Python/Python-2.7.11-foss-2016a.eb +++ /dev/null @@ -1,121 +0,0 @@ -name = 'Python' -version = '2.7.11' - -homepage = 'http://python.org/' -description = """Python is a programming language that lets you work more quickly and integrate your systems - more effectively.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.10.1' -scipyversion = '0.16.1' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '6.0'), - ('SQLite', '3.9.2'), - ('Tk', '8.6.4', '-no-X11'), - ('GMP', '6.1.0'), - # ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated May 28th 2015 -exts_list = [ - ('setuptools', '18.7.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '7.1.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.7', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.4.0', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), - ('pbr', '1.8.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.12.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('six', '1.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '4.0.4', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.1.0', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.6', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.18', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('funcsigs', '0.4', { - 'source_urls': ['https://pypi.python.org/packages/source/f/funcsigs'], - }), - ('mock', '1.3.0', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], - }), - ('pytz', '2015.7', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), - ('enum34', '1.1.2', { - 'modulename': 'enum', - 'source_urls': ['https://pypi.python.org/packages/source/e/enum34'], - }), - ('bitstring', '3.1.4', { - 'source_tmpl': '%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/b/bitstring'], - }), - ('virtualenv', '14.0.5', { - 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-2.7.11-intel-2015b.eb b/p/Python/Python-2.7.11-intel-2015b.eb deleted file mode 100644 index 86d70691..00000000 --- a/p/Python/Python-2.7.11-intel-2015b.eb +++ /dev/null @@ -1,137 +0,0 @@ -name = 'Python' -version = '2.7.11' - -homepage = 'http://python.org/' -description = """Python is a programming language that lets you work more quickly and integrate your systems - more effectively.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.10.1' -scipyversion = '0.16.1' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.9.2'), - ('Tk', '8.6.4', '-no-X11'), - ('GMP', '6.1.0'), - # ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated May 28th 2015 -exts_list = [ - ('setuptools', '18.7.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '7.1.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.7', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': [ - 'numpy-1.8.0-mkl.patch', - 'numpy-%s-sse42.patch' % numpyversion, - ], - }), - ('scipy', scipyversion, { - 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.4.0', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), - ('pbr', '1.8.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.12.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.23.4', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '4.0.4', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.1.0', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.6', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.18', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('funcsigs', '0.4', { - 'source_urls': ['https://pypi.python.org/packages/source/f/funcsigs'], - }), - ('mock', '1.3.0', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], - }), - ('pytz', '2015.7', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), - ('pandas', '0.17.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), - ('enum34', '1.1.2', { - 'modulename': 'enum', - 'source_urls': ['https://pypi.python.org/packages/source/e/enum34'], - }), - ('bitstring', '3.1.4', { - 'source_tmpl': '%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/b/bitstring'], - }), - ('virtualenv', '14.0.5', { - 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-2.7.11-intel-2016.02-GCC-4.9.eb b/p/Python/Python-2.7.11-intel-2016.02-GCC-4.9.eb deleted file mode 100644 index b8a12d27..00000000 --- a/p/Python/Python-2.7.11-intel-2016.02-GCC-4.9.eb +++ /dev/null @@ -1,139 +0,0 @@ -name = 'Python' -version = '2.7.11' - -homepage = 'http://python.org/' -description = """Python is a programming language that lets you work more quickly and integrate your systems - more effectively.""" - -toolchain = {'name': 'intel', 'version': '2016.02-GCC-4.9'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.10.1' -scipyversion = '0.16.1' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '6.0'), - ('SQLite', '3.9.2'), - ('Tk', '8.6.4', '-no-X11'), - ('GMP', '6.1.0'), - # ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated May 28th 2015 -exts_list = [ - ('setuptools', '18.7.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '7.1.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.7', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': [ - 'numpy-1.8.0-mkl.patch', - 'numpy-%s-sse42.patch' % numpyversion, - ], - }), - ('scipy', scipyversion, { - 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.4.0', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), - ('pbr', '1.8.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.12.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.23.4', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '4.0.4', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.1.0', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.6', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.18', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('funcsigs', '0.4', { - 'source_urls': ['https://pypi.python.org/packages/source/f/funcsigs'], - }), - ('mock', '1.3.0', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], - }), - ('pytz', '2015.7', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), - ('pandas', '0.17.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), - ('enum34', '1.1.2', { - 'modulename': 'enum', - 'source_urls': ['https://pypi.python.org/packages/source/e/enum34'], - }), - ('bitstring', '3.1.3', { - # grab tarball from GitHub rather than PyPi since 3.1.3 release on PyPi disappeared; - # cfr. https://github.com/scott-griffiths/bitstring/issues/159 - 'source_tmpl': '%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://github.com/scott-griffiths/bitstring/archive/'], - }), - ('virtualenv', '14.0.5', { - 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-2.7.11-intel-2016a-libX11-1.6.3.eb b/p/Python/Python-2.7.11-intel-2016a-libX11-1.6.3.eb deleted file mode 100644 index e3a99f69..00000000 --- a/p/Python/Python-2.7.11-intel-2016a-libX11-1.6.3.eb +++ /dev/null @@ -1,147 +0,0 @@ -name = 'Python' -version = '2.7.11' - -versionsuffix = '-libX11-1.6.3' - -homepage = 'http://python.org/' -description = """Python is a programming language that lets you work more quickly and integrate your systems - more effectively.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.10.1' -scipyversion = '0.16.1' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '6.0'), - ('SQLite', '3.9.2'), - ('Tk', '8.6.4', versionsuffix), - ('GMP', '6.1.0'), - # ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated May 28th 2015 -exts_list = [ - ('setuptools', '18.7.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '7.1.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.7', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': [ - 'numpy-1.8.0-mkl.patch', - 'numpy-%s-sse42.patch' % numpyversion, - ], - }), - ('scipy', scipyversion, { - 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.4.0', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), - ('pbr', '1.8.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.12.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.23.4', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '4.0.4', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.1.0', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.6', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.18', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('funcsigs', '0.4', { - 'source_urls': ['https://pypi.python.org/packages/source/f/funcsigs'], - }), - ('mock', '1.3.0', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], - }), - ('pytz', '2015.7', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), - ('pandas', '0.17.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), - ('enum34', '1.1.2', { - 'modulename': 'enum', - 'source_urls': ['https://pypi.python.org/packages/source/e/enum34'], - }), -<< << << < HEAD - ('bitstring', '3.1.4', { - 'source_tmpl': '%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/b/bitstring'], -== == == = - ('bitstring', '3.1.3', { - # grab tarball from GitHub rather than PyPi since 3.1.3 release on PyPi disappeared; - # cfr. https://github.com/scott-griffiths/bitstring/issues/159 - 'source_tmpl': '%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://github.com/scott-griffiths/bitstring/archive/'], ->>>>>> > hpcugent / master - }), - ('virtualenv', '14.0.5', { - 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], - }), -] - -moduleclass='lang' diff --git a/p/Python/Python-2.7.11-intel-2016a.eb b/p/Python/Python-2.7.11-intel-2016a.eb deleted file mode 100644 index 14683881..00000000 --- a/p/Python/Python-2.7.11-intel-2016a.eb +++ /dev/null @@ -1,139 +0,0 @@ -name = 'Python' -version = '2.7.11' - -homepage = 'http://python.org/' -description = """Python is a programming language that lets you work more quickly and integrate your systems - more effectively.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.10.1' -scipyversion = '0.16.1' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '6.0'), - ('SQLite', '3.9.2'), - ('Tk', '8.6.4', '-no-X11'), - ('GMP', '6.1.0'), - # ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated May 28th 2015 -exts_list = [ - ('setuptools', '18.7.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '7.1.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.7', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': [ - 'numpy-1.8.0-mkl.patch', - 'numpy-%s-sse42.patch' % numpyversion, - ], - }), - ('scipy', scipyversion, { - 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.4.0', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), - ('pbr', '1.8.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.12.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.23.4', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '4.0.4', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.1.0', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.6', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.18', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('funcsigs', '0.4', { - 'source_urls': ['https://pypi.python.org/packages/source/f/funcsigs'], - }), - ('mock', '1.3.0', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], - }), - ('pytz', '2015.7', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), - ('pandas', '0.17.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), - ('enum34', '1.1.2', { - 'modulename': 'enum', - 'source_urls': ['https://pypi.python.org/packages/source/e/enum34'], - }), - ('bitstring', '3.1.3', { - # grab tarball from GitHub rather than PyPi since 3.1.3 release on PyPi disappeared; - # cfr. https://github.com/scott-griffiths/bitstring/issues/159 - 'source_tmpl': '%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://github.com/scott-griffiths/bitstring/archive/'], - }), - ('virtualenv', '14.0.5', { - 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-2.7.9-foss-2015.05.eb b/p/Python/Python-2.7.9-foss-2015.05.eb deleted file mode 100644 index 75386ccc..00000000 --- a/p/Python/Python-2.7.9-foss-2015.05.eb +++ /dev/null @@ -1,116 +0,0 @@ -name = 'Python' -version = '2.7.9' - -homepage = 'https://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." - -toolchain = {'name': 'foss', 'version': '2015.05'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.9.1' -scipyversion = '0.14.1' - -source_urls = ['https://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.8.8.1'), - ('Tk', '8.6.3', '-no-X11'), - # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated Jan 19th 2015 -exts_list = [ - ('setuptools', '11.3.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '6.0.6', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': [('https://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - }), - ('scipy', scipyversion, { - 'source_urls': [('https://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['https://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.2.1', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), - ('pbr', '0.10.8', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.10.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.21.2', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.9.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.0', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '3.4.0', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.0.1', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['https://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.11', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.15.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.3', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.13', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('mock', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], - }), - ('pytz', '2014.10', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), - ('pandas', '0.16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-2.7.9-foss-2015a-bare.eb b/p/Python/Python-2.7.9-foss-2015a-bare.eb deleted file mode 100644 index a04b4992..00000000 --- a/p/Python/Python-2.7.9-foss-2015a-bare.eb +++ /dev/null @@ -1,31 +0,0 @@ -name = 'Python' -version = '2.7.9' -versionsuffix = '-bare' - -homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." - -toolchain = {'name': 'foss', 'version': '2015a'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.8.8.1'), - ('Tk', '8.6.3', '-no-X11'), - # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# bare installation: no extensions included -exts_list = [] - -moduleclass = 'lang' diff --git a/p/Python/Python-2.7.9-foss-2015a.eb b/p/Python/Python-2.7.9-foss-2015a.eb deleted file mode 100644 index 4d8258d2..00000000 --- a/p/Python/Python-2.7.9-foss-2015a.eb +++ /dev/null @@ -1,116 +0,0 @@ -name = 'Python' -version = '2.7.9' - -homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." - -toolchain = {'name': 'foss', 'version': '2015a'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.9.1' -scipyversion = '0.14.1' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.8.8.1'), - ('Tk', '8.6.3', '-no-X11'), - # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated Jan 19th 2015 -exts_list = [ - ('setuptools', '11.3.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '6.0.6', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - }), - ('scipy', scipyversion, { - 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.2.1', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), - ('pbr', '0.10.8', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.10.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.21.2', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.9.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.0', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '3.4.0', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.0.1', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.11', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.15.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.3', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.13', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('mock', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], - }), - ('pytz', '2014.10', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), - ('pandas', '0.16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-2.7.9-foss-2015b.eb b/p/Python/Python-2.7.9-foss-2015b.eb deleted file mode 100644 index efc2d08d..00000000 --- a/p/Python/Python-2.7.9-foss-2015b.eb +++ /dev/null @@ -1,116 +0,0 @@ -name = 'Python' -version = '2.7.9' - -homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." - -toolchain = {'name': 'foss', 'version': '2015b'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.9.1' -scipyversion = '0.14.1' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.8.8.1'), - ('Tk', '8.6.3', '-no-X11'), - # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated Jan 19th 2015 -exts_list = [ - ('setuptools', '11.3.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '6.0.6', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - }), - ('scipy', scipyversion, { - 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.2.1', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), - ('pbr', '0.10.8', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.10.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.21.2', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.9.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.0', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '3.4.0', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.0.1', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.11', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.15.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.3', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.13', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('mock', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], - }), - ('pytz', '2014.10', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), - ('pandas', '0.16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-2.7.9-foss-2015g.eb b/p/Python/Python-2.7.9-foss-2015g.eb deleted file mode 100644 index 386b753b..00000000 --- a/p/Python/Python-2.7.9-foss-2015g.eb +++ /dev/null @@ -1,115 +0,0 @@ -name = 'Python' -version = '2.7.9' - -homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.9.1' -scipyversion = '0.14.1' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.8.8.1'), - # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated Jan 19th 2015 -exts_list = [ - ('setuptools', '11.3.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '6.0.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.4', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - }), - ('scipy', scipyversion, { - 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], - }), - ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.2.1', { - 'source_urls': ['http://argparse.googlecode.com/files/'], - }), - ('pbr', '0.10.8', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.10.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.21.2', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.9.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.0', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '3.4.0', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.0.1', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.11', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.15.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.3', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.13', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('mock', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], - }), - ('pytz', '2014.10', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), - ('pandas', '0.16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-2.7.9-intel-2015a-bare.eb b/p/Python/Python-2.7.9-intel-2015a-bare.eb deleted file mode 100644 index f327891d..00000000 --- a/p/Python/Python-2.7.9-intel-2015a-bare.eb +++ /dev/null @@ -1,31 +0,0 @@ -name = 'Python' -version = '2.7.9' -versionsuffix = '-bare' - -homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.8.8.1'), - ('Tk', '8.6.3', '-no-X11'), - # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# bare installation: no extensions included -exts_list = [] - -moduleclass = 'lang' diff --git a/p/Python/Python-2.7.9-intel-2015a.eb b/p/Python/Python-2.7.9-intel-2015a.eb deleted file mode 100644 index 188046b9..00000000 --- a/p/Python/Python-2.7.9-intel-2015a.eb +++ /dev/null @@ -1,117 +0,0 @@ -name = 'Python' -version = '2.7.9' - -homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.9.1' -scipyversion = '0.14.1' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.8.8.1'), - ('Tk', '8.6.3', '-no-X11'), - # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated Jan 19th 2015 -exts_list = [ - ('setuptools', '11.3.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '6.0.6', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': ['numpy-1.8.0-mkl.patch'], - }), - ('scipy', scipyversion, { - 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.2.1', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), - ('pbr', '0.10.8', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.10.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.21.2', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.9.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.0', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '3.4.0', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.0.1', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.11', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.15.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.3', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.13', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('mock', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], - }), - ('pytz', '2014.10', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), - ('pandas', '0.16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-2.7.9-intel-2015b.eb b/p/Python/Python-2.7.9-intel-2015b.eb deleted file mode 100644 index 2514e590..00000000 --- a/p/Python/Python-2.7.9-intel-2015b.eb +++ /dev/null @@ -1,106 +0,0 @@ -name = 'Python' -version = '2.7.9' - -homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.9.1' -scipyversion = '0.14.1' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.8.8.1'), - # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated Jan 19th 2015 -exts_list = [ - ('setuptools', '11.3.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '6.0.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.4', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], - }), - ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.2.1', { - 'source_urls': ['http://argparse.googlecode.com/files/'], - }), - ('pbr', '0.10.8', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.10.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.21.2', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.9.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.0', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '3.4.0', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.0.1', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.11', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.15.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.3', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.13', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('mock', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], - }), - ('pytz', '2014.10', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-3.5.0-intel-2015b.eb b/p/Python/Python-3.5.0-intel-2015b.eb deleted file mode 100644 index 6b562baa..00000000 --- a/p/Python/Python-3.5.0-intel-2015b.eb +++ /dev/null @@ -1,113 +0,0 @@ -name = 'Python' -version = '3.5.0' - -homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.9.3' -scipyversion = '0.16.0' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.9.2'), - ('Tk', '8.6.4', '-no-X11'), - ('GMP', '6.1.0'), - # ('OpenSSL', '1.0.1p'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev')] - -# order is important! -# package versions updated Jan 19th 2015 -exts_list = [ - ('setuptools', '18.3.2', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '7.1.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.7', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': ['https://pypi.python.org/packages/source/n/numpy/'], - 'patches': ['numpy-1.8.0-mkl.patch'], - }), - ('scipy', scipyversion, { - 'source_urls': ['https://pypi.python.org/packages/source/s/scipy/'], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - 'patches': [ - 'paycheck-1.0.2_setup-open-README-utf8.patch', - ], - }), - ('pbr', '1.8.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.10.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.23.2', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.9.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - 'patches': [ - 'deap-1.0.2_setup-open-README-utf8.patch', - ], - }), - ('decorator', '4.0.4', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.1.0', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.15.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.3', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.18', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-3.5.1-foss-2015a.eb b/p/Python/Python-3.5.1-foss-2015a.eb deleted file mode 100644 index 6cd8b8c4..00000000 --- a/p/Python/Python-3.5.1-foss-2015a.eb +++ /dev/null @@ -1,126 +0,0 @@ -name = 'Python' -version = '3.5.1' - -homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." - -toolchain = {'name': 'foss', 'version': '2015a'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.10.4' -scipyversion = '0.17.0' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.10.0'), - ('Tk', '8.6.4', '-no-X11'), # this requires a full X11 stack - ('GMP', '6.1.0'), - ('XZ', '5.2.2'), - # ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev')] - -# order is important! -# package versions updated Feb 25th 2016 -exts_list = [ - ('setuptools', '20.1.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '8.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.7', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': ['https://pypi.python.org/packages/source/n/numpy/'], - }), - ('scipy', scipyversion, { - 'source_urls': ['https://pypi.python.org/packages/source/s/scipy/'], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '2.0.0', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - 'patches': [ - 'paycheck-1.0.2_setup-open-README-utf8.patch', - ], - }), - ('pbr', '1.8.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.12.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.23.4', { - 'source_urls': ['https://pypi.python.org/packages/source/C/Cython/'], - }), - ('six', '1.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - 'patches': [ - 'deap-1.0.2_setup-open-README-utf8.patch', - ], - }), - ('decorator', '4.0.9', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.1.0', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.1.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.18', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('pandas', '0.17.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), - ('bitstring', '3.1.3', { - 'source_tmpl': '%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/b/bitstring'], - }), - ('pytz', '2016.3', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], - }), - ('virtualenv', '15.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-3.5.1-foss-2016a.eb b/p/Python/Python-3.5.1-foss-2016a.eb deleted file mode 100644 index b32555c0..00000000 --- a/p/Python/Python-3.5.1-foss-2016a.eb +++ /dev/null @@ -1,116 +0,0 @@ -name = 'Python' -version = '3.5.1' - -homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.10.4' -scipyversion = '0.17.0' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '6.0'), - ('SQLite', '3.9.2'), - ('Tk', '8.6.4', '-no-X11'), - ('GMP', '6.1.0'), - ('XZ', '5.2.2'), - # ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev')] - -# order is important! -# package versions updated Feb 25th 2016 -exts_list = [ - ('setuptools', '20.1.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '8.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.7', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': ['https://pypi.python.org/packages/source/n/numpy/'], - }), - ('scipy', scipyversion, { - 'source_urls': ['https://pypi.python.org/packages/source/s/scipy/'], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '2.0.0', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - 'patches': [ - 'paycheck-1.0.2_setup-open-README-utf8.patch', - ], - }), - ('pbr', '1.8.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.12.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.23.4', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - 'patches': [ - 'deap-1.0.2_setup-open-README-utf8.patch', - ], - }), - ('decorator', '4.0.9', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.1.0', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.1.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.18', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('pandas', '0.17.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-3.5.1-intel-2016.01.eb b/p/Python/Python-3.5.1-intel-2016.01.eb deleted file mode 100644 index f3710215..00000000 --- a/p/Python/Python-3.5.1-intel-2016.01.eb +++ /dev/null @@ -1,120 +0,0 @@ -name = 'Python' -version = '3.5.1' - -homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." - -toolchain = {'name': 'intel', 'version': '2016.01'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.10.4' -scipyversion = '0.17.0' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('SQLite', '3.9.2'), - ('Tk', '8.6.4', '-no-X11'), - ('GMP', '6.1.0'), - ('XZ', '5.2.2'), - # ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev')] - -# order is important! -# package versions updated Feb 25th 2016 -exts_list = [ - ('setuptools', '20.1.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '8.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.7', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': ['https://pypi.python.org/packages/source/n/numpy/'], - 'patches': [ - 'numpy-1.8.0-mkl.patch', - 'numpy-%s-sse42.patch' % numpyversion, - ], - }), - ('scipy', scipyversion, { - 'source_urls': ['https://pypi.python.org/packages/source/s/scipy/'], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '2.0.0', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - 'patches': [ - 'paycheck-1.0.2_setup-open-README-utf8.patch', - ], - }), - ('pbr', '1.8.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.12.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.23.4', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - 'patches': [ - 'deap-1.0.2_setup-open-README-utf8.patch', - ], - }), - ('decorator', '4.0.9', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.1.0', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.1.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.18', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('pandas', '0.17.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-3.5.1-intel-2016a.eb b/p/Python/Python-3.5.1-intel-2016a.eb deleted file mode 100644 index 5d7c030f..00000000 --- a/p/Python/Python-3.5.1-intel-2016a.eb +++ /dev/null @@ -1,120 +0,0 @@ -name = 'Python' -version = '3.5.1' - -homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.10.4' -scipyversion = '0.17.0' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '6.0'), - ('SQLite', '3.9.2'), - ('Tk', '8.6.4', '-no-X11'), - ('GMP', '6.1.0'), - ('XZ', '5.2.2'), - # ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev')] - -# order is important! -# package versions updated Feb 25th 2016 -exts_list = [ - ('setuptools', '20.1.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '8.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.7', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': ['https://pypi.python.org/packages/source/n/numpy/'], - 'patches': [ - 'numpy-1.8.0-mkl.patch', - 'numpy-%s-sse42.patch' % numpyversion, - ], - }), - ('scipy', scipyversion, { - 'source_urls': ['https://pypi.python.org/packages/source/s/scipy/'], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '2.0.0', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - 'patches': [ - 'paycheck-1.0.2_setup-open-README-utf8.patch', - ], - }), - ('pbr', '1.8.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.12.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.23.4', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('six', '1.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - 'patches': [ - 'deap-1.0.2_setup-open-README-utf8.patch', - ], - }), - ('decorator', '4.0.9', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.1.0', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.1.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.18', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('pandas', '0.17.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-3.5.2-foss-2016.04.eb b/p/Python/Python-3.5.2-foss-2016.04.eb deleted file mode 100644 index f49b2ff0..00000000 --- a/p/Python/Python-3.5.2-foss-2016.04.eb +++ /dev/null @@ -1,123 +0,0 @@ -name = 'Python' -version = '3.5.2' - -homepage = 'http://python.org/' -description = """Python is a programming language that lets you work more quickly - and integrate your systems more effectively.""" - -toolchain = {'name': 'foss', 'version': '2016.04'} -toolchainopts = {'pic': True} - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '6.0'), - ('SQLite', '3.13.0'), - ('Tk', '8.6.5'), # this requires a full X11 stack - ('GMP', '6.1.1'), - ('XZ', '5.2.2'), - ('libffi', '3.2.1'), - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - #('OpenSSL', '1.0.2h'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -# order is important! -# package versions updated May 28th 2015 -exts_list = [ - ('setuptools', '23.1.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '8.1.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.7', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', '1.11.1', { - 'source_urls': ['https://pypi.python.org/packages/source/n/numpy'], - 'patches': ['numpy-1.8.0-mkl.patch'], - }), - ('scipy', '0.17.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/scipy'], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - 'patches': [ - 'paycheck-1.0.2_setup-open-README-utf8.patch', - ], - }), - ('pbr', '1.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.12.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.24', { - 'source_urls': ['https://pypi.python.org/packages/source/c/cython/'], - }), - ('six', '1.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.5.3', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - 'patches': [ - 'deap-1.0.2_setup-open-README-utf8.patch', - ], - }), - ('decorator', '4.0.10', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.1.0', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('cryptography', '1.4', { - 'source_urls': ['https://pypi.python.org/packages/source/c/cryptography/'], - }), - ('paramiko', '2.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.1.5', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.18', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), - ('pandas', '0.18.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], - }), - ('virtualenv', '15.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'], - }), -] - -moduleclass = 'lang' diff --git a/p/Python/Python-3.5.2-foss-2016a.eb b/p/Python/Python-3.5.2-foss-2016a.eb deleted file mode 100644 index fb74c574..00000000 --- a/p/Python/Python-3.5.2-foss-2016a.eb +++ /dev/null @@ -1,101 +0,0 @@ -name = 'Python' -version = '3.5.2' - -homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '6.0'), - ('SQLite', '3.9.2'), - ('Tk', '8.6.4', '-no-X11'), - ('GMP', '6.1.0'), - ('XZ', '5.2.2'), - # ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev')] - -# order is important! -# package versions updated Feb 25th 2016 -exts_list = [ - ('setuptools', '20.1.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '8.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.7', { - 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], - }), - ('blist', '1.3.6', { - 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '2.0.0', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], - 'patches': [ - 'paycheck-1.0.2_setup-open-README-utf8.patch', - ], - }), - ('pbr', '1.8.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], - }), - ('lockfile', '0.12.2', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('six', '1.10.0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], - }), - ('dateutil', '2.4.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - 'patches': [ - 'deap-1.0.2_setup-open-README-utf8.patch', - ], - }), - ('decorator', '4.0.9', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.1.0', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('ecdsa', '0.13', { - 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], - }), - ('paramiko', '1.16.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.1.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), - ('netifaces', '0.10.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], - }), - ('netaddr', '0.7.18', { - 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], - }), -] - -moduleclass = 'lang' diff --git a/p/pftoolsV3/pftoolsV3-20160324-foss-2016a.eb b/p/pftoolsV3/pftoolsV3-20160324-foss-2016a.eb deleted file mode 100644 index 44c6f617..00000000 --- a/p/pftoolsV3/pftoolsV3-20160324-foss-2016a.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'pftoolsV3' -version = '20160324' - -homepage = 'http://web.expasy.org/pftools/' -description = """The pftools package contains all the software necessary to build protein and DNA generalized profiles and use - them to scan and align sequences, and search databases. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = ['%(name)s.tar.gz'] -source_urls = [ - 'ftp://ftp.lausanne.isb-sib.ch/pub/software/unix/pftools/%(name)s/'] -checksums = ['ef1d3c7583d764cff06861fca75be455'] - -sanity_check_paths = { - 'files': [ - 'bin/ptof', - 'bin/htop', - 'bin/6ft', - 'bin/2ft', - 'bin/pfdump', - 'bin/pfscan', - 'bin/pfsearch'], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/p/phonopy/phonopy-1.11.12.5-intel-2015b-Python-2.7.9.eb b/p/phonopy/phonopy-1.11.12.5-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index 10343579..00000000 --- a/p/phonopy/phonopy-1.11.12.5-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,30 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'phonopy' -version = '1.11.12.5' - -homepage = 'http://phonopy.sourceforge.net/' -description = """Phonopy is an open source package of phonon calculations based on the supercell approach.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = [ - 'https://pypi.python.org/packages/4b/25/effde7ab68249fbed654dc317354a028597bfd4a4f804d7cb3ed987c55b7/'] -sources = ['%(name)s-%(version)s.tar.gz'] - -python = 'Python' -pythonversion = '2.7.9' -pythonshortversion = '.'.join(pythonversion.split('.')[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - -dependencies = [ - (python, pythonversion), - ('matplotlib', '1.4.3', versionsuffix), - ('lxml', '3.4.4', versionsuffix), - ('PyYAML', '3.11', versionsuffix), -] - -pylibdir = "lib/python%s/site-packages/%%(name)s" % pythonshortversion - -moduleclass = 'phys' diff --git a/p/phonopy/phonopy-1.11.6.7-intel-2015b-Python-2.7.9.eb b/p/phonopy/phonopy-1.11.6.7-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index 5061c6b8..00000000 --- a/p/phonopy/phonopy-1.11.6.7-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'phonopy' -version = '1.11.6.7' - -homepage = 'http://phonopy.sourceforge.net/' -description = """Phonopy is an open source package of phonon calculations based on the supercell approach.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -#source_urls = [SOURCEFORGE_SOURCE] -sources = ['phonopy-1.11.6.7.tar.gz'] - -python = 'Python' -pythonversion = '2.7.9' -pythonshortversion = '.'.join(pythonversion.split('.')[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - -dependencies = [ - (python, pythonversion), - ('matplotlib', '1.4.3', versionsuffix), - ('lxml', '3.4.4', versionsuffix), - ('PyYAML', '3.11', versionsuffix), -] - -pylibdir = "lib/python%s/site-packages/%%(name)s" % pythonshortversion - -moduleclass = 'phys' diff --git a/p/pigz/pigz-2.3.3-foss-2015b.eb b/p/pigz/pigz-2.3.3-foss-2015b.eb deleted file mode 100644 index 73050054..00000000 --- a/p/pigz/pigz-2.3.3-foss-2015b.eb +++ /dev/null @@ -1,39 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# Swiss Institute of Bioinformatics -# Biozentrum - University of Basel - -easyblock = 'MakeCp' - -name = 'pigz' -version = '2.3.3' - -homepage = 'http://zlib.net/pigz/' -description = """ pigz, which stands for parallel implementation of gzip, is a fully - functional replacement for gzip that exploits multiple processors and multiple cores - to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib - and pthread libraries. """ - -toolchain = {'name': 'foss', 'version': '2015b'} - -source_urls = ['http://zlib.net/pigz/'] -sources = [SOURCE_TAR_GZ] - -# Patch Makefile so zlib provided by EasyBuild is picked up -patches = ['pigz-2.3.3_Makefile.patch'] - -# README recommends zlib 1.2.6 or higher -dependencies = [('zlib', '1.2.8')] - -buildopts = ' CC=$CC' - -parallel = 1 - -files_to_copy = [(["pigz", "unpigz"], "bin")] - -sanity_check_paths = { - 'files': ["bin/pigz", "bin/unpigz"], - 'dirs': [""], -} - -moduleclass = 'tools' diff --git a/p/pkg-config/pkg-config-0.27.1-foss-2015b.eb b/p/pkg-config/pkg-config-0.27.1-foss-2015b.eb deleted file mode 100644 index 73c06e7f..00000000 --- a/p/pkg-config/pkg-config-0.27.1-foss-2015b.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'pkg-config' -version = '0.27.1' - -homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' -description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the - correct compiler options on the command line so an application can use - gcc -o test test.c `pkg-config --libs --cflags glib-2.0` - for instance, rather than hard-coding values on where to find glib (or other libraries).""" - -# don't use PAX, it might break. -tar_config_opts = True - -toolchain = {'name': 'foss', 'version': '2015b'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://pkgconfig.freedesktop.org/releases/'] - -configopts = " --with-internal-glib" - -sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/p/pkg-config/pkg-config-0.27.1-foss-2015g.eb b/p/pkg-config/pkg-config-0.27.1-foss-2015g.eb deleted file mode 100644 index 815f1f88..00000000 --- a/p/pkg-config/pkg-config-0.27.1-foss-2015g.eb +++ /dev/null @@ -1,29 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-09-08_14-24-22 -# Built with EasyBuild version 2.1.1 on 2015-08-17_08-31-37 -easyblock = 'ConfigureMake' - -name = 'pkg-config' -version = '0.27.1' - -homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' -description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the - correct compiler options on the command line so an application can use - gcc -o test test.c `pkg-config --libs --cflags glib-2.0` - for instance, rather than hard-coding values on where to find glib (or other libraries).""" - -# don't use PAX, it might break. -tar_config_opts = True - -toolchain = {'name': 'foss', 'version': '2015g'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://pkgconfig.freedesktop.org/releases/'] - -configopts = " --with-internal-glib" - -sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/p/pkg-config/pkg-config-0.27.1-intel-2015a.eb b/p/pkg-config/pkg-config-0.27.1-intel-2015a.eb deleted file mode 100644 index ddfabeac..00000000 --- a/p/pkg-config/pkg-config-0.27.1-intel-2015a.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'pkg-config' -version = '0.27.1' - -homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' -description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the - correct compiler options on the command line so an application can use - gcc -o test test.c `pkg-config --libs --cflags glib-2.0` - for instance, rather than hard-coding values on where to find glib (or other libraries).""" - -# don't use PAX, it might break. -tar_config_opts = True - -toolchain = {'name': 'intel', 'version': '2015a'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://pkgconfig.freedesktop.org/releases/'] - -configopts = " --with-internal-glib" - -sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/p/pkg-config/pkg-config-0.27.1-intel-2015b.eb b/p/pkg-config/pkg-config-0.27.1-intel-2015b.eb deleted file mode 100644 index f271d1a6..00000000 --- a/p/pkg-config/pkg-config-0.27.1-intel-2015b.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'pkg-config' -version = '0.27.1' - -homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' -description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the - correct compiler options on the command line so an application can use - gcc -o test test.c `pkg-config --libs --cflags glib-2.0` - for instance, rather than hard-coding values on where to find glib (or other libraries).""" - -# don't use PAX, it might break. -tar_config_opts = True - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://pkgconfig.freedesktop.org/releases/'] - -configopts = " --with-internal-glib" - -sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/p/pkg-config/pkg-config-0.28-intel-2015a.eb b/p/pkg-config/pkg-config-0.28-intel-2015a.eb deleted file mode 100644 index f5981f13..00000000 --- a/p/pkg-config/pkg-config-0.28-intel-2015a.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'pkg-config' -version = '0.28' - -homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' -description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the - correct compiler options on the command line so an application can use - gcc -o test test.c `pkg-config --libs --cflags glib-2.0` - for instance, rather than hard-coding values on where to find glib (or other libraries).""" - -# don't use PAX, it might break. -tar_config_opts = True - -toolchain = {'name': 'intel', 'version': '2015a'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://pkgconfig.freedesktop.org/releases/'] - -configopts = " --with-internal-glib" - -sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [] -} - -moduleclass = 'devel' diff --git a/p/pkg-config/pkg-config-0.29-foss-2016a.eb b/p/pkg-config/pkg-config-0.29-foss-2016a.eb deleted file mode 100644 index 27965157..00000000 --- a/p/pkg-config/pkg-config-0.29-foss-2016a.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'pkg-config' -version = '0.29' - -homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' -description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the - correct compiler options on the command line so an application can use - gcc -o test test.c `pkg-config --libs --cflags glib-2.0` - for instance, rather than hard-coding values on where to find glib (or other libraries).""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://pkgconfig.freedesktop.org/releases/'] - -# don't use PAX, it might break. -tar_config_opts = True - -configopts = " --with-internal-glib" - -sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/p/pkg-config/pkg-config-0.29-intel-2015a.eb b/p/pkg-config/pkg-config-0.29-intel-2015a.eb deleted file mode 100644 index 55e66932..00000000 --- a/p/pkg-config/pkg-config-0.29-intel-2015a.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'pkg-config' -version = '0.29' - -homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' -description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the - correct compiler options on the command line so an application can use - gcc -o test test.c `pkg-config --libs --cflags glib-2.0` - for instance, rather than hard-coding values on where to find glib (or other libraries).""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://pkgconfig.freedesktop.org/releases/'] - -# don't use PAX, it might break. -tar_config_opts = True - -configopts = " --with-internal-glib" - -sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/p/pkg-config/pkg-config-0.29-intel-2015b.eb b/p/pkg-config/pkg-config-0.29-intel-2015b.eb deleted file mode 100644 index 245547ce..00000000 --- a/p/pkg-config/pkg-config-0.29-intel-2015b.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'pkg-config' -version = '0.29' - -homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' -description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the - correct compiler options on the command line so an application can use - gcc -o test test.c `pkg-config --libs --cflags glib-2.0` - for instance, rather than hard-coding values on where to find glib (or other libraries).""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://pkgconfig.freedesktop.org/releases/'] - -# don't use PAX, it might break. -tar_config_opts = True - -configopts = " --with-internal-glib" - -sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/p/pkg-config/pkg-config-0.29-intel-2016a.eb b/p/pkg-config/pkg-config-0.29-intel-2016a.eb deleted file mode 100644 index cc9d6a1e..00000000 --- a/p/pkg-config/pkg-config-0.29-intel-2016a.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'pkg-config' -version = '0.29' - -homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' -description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the - correct compiler options on the command line so an application can use - gcc -o test test.c `pkg-config --libs --cflags glib-2.0` - for instance, rather than hard-coding values on where to find glib (or other libraries).""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://pkgconfig.freedesktop.org/releases/'] - -# don't use PAX, it might break. -tar_config_opts = True - -configopts = " --with-internal-glib" - -sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/p/pkg-config/pkg-config-0.29.1-foss-2016a.eb b/p/pkg-config/pkg-config-0.29.1-foss-2016a.eb deleted file mode 100644 index bb2fea6c..00000000 --- a/p/pkg-config/pkg-config-0.29.1-foss-2016a.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'pkg-config' -version = '0.29.1' - -homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' -description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the - correct compiler options on the command line so an application can use - gcc -o test test.c `pkg-config --libs --cflags glib-2.0` - for instance, rather than hard-coding values on where to find glib (or other libraries).""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://pkgconfig.freedesktop.org/releases/'] - -# don't use PAX, it might break. -tar_config_opts = True - -configopts = " --with-internal-glib" - -sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/p/pkg-config/pkg-config-0.29.1-intel-2016a.eb b/p/pkg-config/pkg-config-0.29.1-intel-2016a.eb deleted file mode 100644 index eeb50eab..00000000 --- a/p/pkg-config/pkg-config-0.29.1-intel-2016a.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'pkg-config' -version = '0.29.1' - -homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' -description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the - correct compiler options on the command line so an application can use - gcc -o test test.c `pkg-config --libs --cflags glib-2.0` - for instance, rather than hard-coding values on where to find glib (or other libraries).""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://pkgconfig.freedesktop.org/releases/'] - -# don't use PAX, it might break. -tar_config_opts = True - -configopts = " --with-internal-glib" - -sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/p/prompt-toolkit/prompt-toolkit-1.0.3-foss-2016a-Python-2.7.11.eb b/p/prompt-toolkit/prompt-toolkit-1.0.3-foss-2016a-Python-2.7.11.eb deleted file mode 100644 index 6e4e6c04..00000000 --- a/p/prompt-toolkit/prompt-toolkit-1.0.3-foss-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'prompt-toolkit' -version = '1.0.3' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://github.com/jonathanslenders/python-prompt-toolkit' -description = """prompt_toolkit is a Python library for building powerful interactive command lines and terminal applications.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [ - 'https://pypi.python.org/packages/4d/1f/5f5a3831006a1e9799d418e32d02c01529d6fa292851e381bd7df4908079/'] -sources = ['prompt_toolkit-%(version)s-py2-none-any.whl'] - -dependencies = [ - ('Python', '2.7.11'), - ('wcwidth', '0.1.7', versionsuffix), -] -builddependencies = [ - ('pip', '8.1.2', versionsuffix), -] - -use_pip = True -unpack_sources = False - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages/prompt_toolkit'], -} - -options = {'modulename': 'prompt_toolkit'} - -moduleclass = 'lib' diff --git a/p/prompt-toolkit/prompt-toolkit-1.0.3-foss-2016a-Python-3.5.1.eb b/p/prompt-toolkit/prompt-toolkit-1.0.3-foss-2016a-Python-3.5.1.eb deleted file mode 100644 index 1284d4a3..00000000 --- a/p/prompt-toolkit/prompt-toolkit-1.0.3-foss-2016a-Python-3.5.1.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'prompt-toolkit' -version = '1.0.3' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://github.com/jonathanslenders/python-prompt-toolkit' -description = """prompt_toolkit is a Python library for building powerful interactive command lines and terminal applications.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [ - 'https://pypi.python.org/packages/1b/5b/6a1c5e6b9ad024a32b93abaeb49f517079f0fd9539aba2c2f36d8a76a1cf/'] -sources = ['prompt_toolkit-%(version)s-py3-none-any.whl'] - -dependencies = [ - ('Python', '3.5.1'), - ('wcwidth', '0.1.7', versionsuffix), -] - -use_pip = True -unpack_sources = False - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages/prompt_toolkit'], -} - -options = {'modulename': 'prompt_toolkit'} - -moduleclass = 'lib' diff --git a/p/prompt-toolkit/prompt-toolkit-1.0.6-foss-2016b-Python-2.7.12.eb b/p/prompt-toolkit/prompt-toolkit-1.0.6-foss-2016b-Python-2.7.12.eb deleted file mode 100644 index acfd113f..00000000 --- a/p/prompt-toolkit/prompt-toolkit-1.0.6-foss-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'prompt-toolkit' -version = '1.0.6' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://github.com/jonathanslenders/python-prompt-toolkit' -description = """prompt_toolkit is a Python library for building powerful interactive command lines and terminal applications.""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = [ - 'https://pypi.python.org/packages/eb/81/a7ad3c223f323d05381208c262889bd09577852bd5044a13965a9a13f5ed/'] -sources = ['prompt_toolkit-%(version)s-py2-none-any.whl'] - -dependencies = [ - ('Python', '2.7.12'), - ('wcwidth', '0.1.7', versionsuffix), -] -builddependencies = [ - ('pip', '8.1.2', versionsuffix), -] - -use_pip = True -unpack_sources = False - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages/prompt_toolkit'], -} - -options = {'modulename': 'prompt_toolkit'} - -moduleclass = 'lib' diff --git a/p/prompt-toolkit/prompt-toolkit-1.0.6-intel-2016b-Python-2.7.12.eb b/p/prompt-toolkit/prompt-toolkit-1.0.6-intel-2016b-Python-2.7.12.eb deleted file mode 100644 index fb94a1e1..00000000 --- a/p/prompt-toolkit/prompt-toolkit-1.0.6-intel-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'prompt-toolkit' -version = '1.0.6' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://github.com/jonathanslenders/python-prompt-toolkit' -description = """prompt_toolkit is a Python library for building powerful interactive command lines and terminal applications.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = [ - 'https://pypi.python.org/packages/eb/81/a7ad3c223f323d05381208c262889bd09577852bd5044a13965a9a13f5ed/'] -sources = ['prompt_toolkit-%(version)s-py2-none-any.whl'] - -dependencies = [ - ('Python', '2.7.12'), - ('wcwidth', '0.1.7', versionsuffix), -] -builddependencies = [ - ('pip', '8.1.2', versionsuffix), -] - -use_pip = True -unpack_sources = False - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages/prompt_toolkit'], -} - -options = {'modulename': 'prompt_toolkit'} - -moduleclass = 'lib' diff --git a/p/prompt-toolkit/prompt-toolkit-1.0.6-intel-2016b-Python-3.5.2.eb b/p/prompt-toolkit/prompt-toolkit-1.0.6-intel-2016b-Python-3.5.2.eb deleted file mode 100644 index 73aea64f..00000000 --- a/p/prompt-toolkit/prompt-toolkit-1.0.6-intel-2016b-Python-3.5.2.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'prompt-toolkit' -version = '1.0.6' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://github.com/jonathanslenders/python-prompt-toolkit' -description = """prompt_toolkit is a Python library for building powerful interactive command lines and terminal applications.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = [ - 'https://pypi.python.org/packages/eb/81/a7ad3c223f323d05381208c262889bd09577852bd5044a13965a9a13f5ed/'] -sources = ['prompt_toolkit-%(version)s-py3-none-any.whl'] - -dependencies = [ - ('Python', '3.5.2'), - ('wcwidth', '0.1.7', versionsuffix), -] - -use_pip = True -unpack_sources = False - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages/prompt_toolkit'], -} - -options = {'modulename': 'prompt_toolkit'} - -moduleclass = 'lib' diff --git a/p/protobuf-python/protobuf-python-3.0.2-foss-2016a-Python-2.7.11.eb b/p/protobuf-python/protobuf-python-3.0.2-foss-2016a-Python-2.7.11.eb deleted file mode 100644 index 3027748d..00000000 --- a/p/protobuf-python/protobuf-python-3.0.2-foss-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'protobuf-python' -version = '3.0.2' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://github.com/google/protobuf/' -description = """Python Protocol Buffers runtime library.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://github.com/google/protobuf/archive/v%(version)s'] -sources = [SOURCE_TAR_GZ] - -dependencies = [ - ('Python', '2.7.11'), - ('protobuf', version) -] - -start_dir = 'python' - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -options = {'modulename': 'google.protobuf'} - -moduleclass = 'devel' diff --git a/p/protobuf-python/protobuf-python-3.0.2-foss-2016a-Python-3.5.1.eb b/p/protobuf-python/protobuf-python-3.0.2-foss-2016a-Python-3.5.1.eb deleted file mode 100644 index fb810496..00000000 --- a/p/protobuf-python/protobuf-python-3.0.2-foss-2016a-Python-3.5.1.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'protobuf-python' -version = '3.0.2' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://github.com/google/protobuf/' -description = """Python Protocol Buffers runtime library.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://github.com/google/protobuf/archive/v%(version)s'] -sources = [SOURCE_TAR_GZ] - -dependencies = [ - ('Python', '3.5.1'), - ('protobuf', version) -] - -start_dir = 'python' - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -options = {'modulename': 'google.protobuf'} - -moduleclass = 'devel' diff --git a/p/protobuf-python/protobuf-python-3.2.0-foss-2016a-Python-2.7.13.eb b/p/protobuf-python/protobuf-python-3.2.0-foss-2016a-Python-2.7.13.eb deleted file mode 100644 index 93a66d69..00000000 --- a/p/protobuf-python/protobuf-python-3.2.0-foss-2016a-Python-2.7.13.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'protobuf-python' -version = '3.2.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://github.com/google/protobuf/' -description = """Python Protocol Buffers runtime library.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://github.com/google/protobuf/archive/v%(version)s'] -sources = [SOURCE_TAR_GZ] - -dependencies = [ - ('Python', '2.7.13', '', True), - ('protobuf', version) -] - -start_dir = 'python' - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -options = {'modulename': 'google.protobuf'} - -moduleclass = 'devel' diff --git a/p/protobuf-python/protobuf-python-3.2.0-intel-2016b-Python-2.7.12.eb b/p/protobuf-python/protobuf-python-3.2.0-intel-2016b-Python-2.7.12.eb deleted file mode 100644 index fd34141e..00000000 --- a/p/protobuf-python/protobuf-python-3.2.0-intel-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'protobuf-python' -version = '3.2.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://github.com/google/protobuf/' -description = """Python Protocol Buffers runtime library.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = ['https://github.com/google/protobuf/archive/v%(version)s'] -sources = [SOURCE_TAR_GZ] - -dependencies = [ - ('Python', '2.7.12'), - ('protobuf', version) -] - -start_dir = 'python' - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -options = {'modulename': 'google.protobuf'} - -moduleclass = 'devel' diff --git a/p/protobuf-python/protobuf-python-3.2.0-intel-2016b-Python-3.5.2.eb b/p/protobuf-python/protobuf-python-3.2.0-intel-2016b-Python-3.5.2.eb deleted file mode 100644 index 51988758..00000000 --- a/p/protobuf-python/protobuf-python-3.2.0-intel-2016b-Python-3.5.2.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'protobuf-python' -version = '3.2.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://github.com/google/protobuf/' -description = """Python Protocol Buffers runtime library.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = ['https://github.com/google/protobuf/archive/v%(version)s'] -sources = [SOURCE_TAR_GZ] - -dependencies = [ - ('Python', '3.5.2'), - ('protobuf', version) -] - -start_dir = 'python' - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -options = {'modulename': 'google.protobuf'} - -moduleclass = 'devel' diff --git a/p/protobuf/protobuf-3.2.0-foss-2016a.eb b/p/protobuf/protobuf-3.2.0-foss-2016a.eb deleted file mode 100644 index bf27e633..00000000 --- a/p/protobuf/protobuf-3.2.0-foss-2016a.eb +++ /dev/null @@ -1,23 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'protobuf' -version = '3.2.0' - -homepage = 'https://github.com/google/protobuf/' -description = """Google Protocol Buffers""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://github.com/google/protobuf/archive/v%(version)s/'] -sources = [SOURCE_TAR_GZ] - -builddependencies = [('Autotools', '20150215')] - -preconfigopts = "./autogen.sh && " - -sanity_check_paths = { - 'files': ['bin/protoc', 'lib/libprotobuf.%s' % SHLIB_EXT], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/p/psmc/psmc-0.6.5-foss-2016a.eb b/p/psmc/psmc-0.6.5-foss-2016a.eb deleted file mode 100644 index 10a28c8d..00000000 --- a/p/psmc/psmc-0.6.5-foss-2016a.eb +++ /dev/null @@ -1,45 +0,0 @@ -easyblock = 'MakeCp' - -name = 'psmc' -version = '0.6.5' - -homepage = 'https://github.com/lh3/psmc' -description = """This software package infers population size history from a diploid sequence -using the Pairwise Sequentially Markovian Coalescent (PSMC) model.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://github.com/lh3/psmc/archive/'] -sources = ['%(version)s.tar.gz'] - -buildopts = '&& cd utils && make' - -utils = [ - 'avg.pl', - 'calD', - 'cntcpg', - 'ctime_plot.pl', - 'dec2ctime.pl', - 'decode2bed.pl', - 'fq2psmcfa', - 'history2ms.pl', - 'ms2psmcfa.pl', - 'mutDiff', - 'pcnt_bezier.lua', - 'psmc2history.pl', - 'psmc_plot.pl', - 'psmc_trunc.pl', - 'splitfa', -] - -files_to_copy = [ - (['psmc'], 'bin'), - (['utils/%s' % util for util in utils], 'bin') -] - -sanity_check_paths = { - 'files': ['bin/psmc'] + ['bin/%s' % util for util in utils], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/p/pyGIMLi/pyGIMLi-20160803-foss-2016a-Python-2.7.11.eb b/p/pyGIMLi/pyGIMLi-20160803-foss-2016a-Python-2.7.11.eb deleted file mode 100644 index 8ec0c44a..00000000 --- a/p/pyGIMLi/pyGIMLi-20160803-foss-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,85 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'pyGIMLi' -version = '20160803' -commit_id = 'a190c53' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.pygimli.org/' -description = """pyGIMLi is an open-source multi-method library for solving inverse - and forward tasks related to geophysical problems. Written in C++ and Python, - it offers both efficiency and flexibility allowing you to quickly build - your own robust inversion applications for the geophysical problem at hand.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://github.com/gimli-org/gimli/archive/'] -sources = ['%s.tar.gz' % commit_id] - -patches = ['%(name)s-%(version)s_openblas.patch'] - -# pyGIMLi is picky about the version of CastXML/pygccxml/pyplusplus -# Check scripts/buildThirdParty.sh -builddependencies = [ - ('CMake', '3.4.3'), - ('CastXML', '20160617'), - ('pygccxml', '20160706', versionsuffix), - ('pyplusplus', '20160707', versionsuffix), -] - -dependencies = [ - ('Python', '2.7.11'), - ('matplotlib', '1.5.1', versionsuffix), - ('pytest', '3.0.1', versionsuffix), - ('Clang', '3.7.1'), - ('Boost', '1.60.0', versionsuffix), - ('zlib', '1.2.8'), - ('Triangle', '1.6'), - ('CppUnit', '1.12.1'), - ('SuiteSparse', '4.5.3', '-METIS-5.1.0'), -] - -separate_build_dir = True - -configopts = '-DBOOST_ROOT=$EBROOTBOOST ' -configopts += '-DBLAS_LIBRARIES=$EBROOTOPENBLAS/lib/libopenblas.%s ' % SHLIB_EXT -configopts += '-DLAPACK_LIBRARIES=$EBROOTOPENBLAS/lib/libopenblas.%s ' % SHLIB_EXT -configopts += '-DCASTXML_EXECUTABLE=$EBROOTCASTXML/bin/castxml ' -configopts += '-DPYGCCXML_PATH=$EBROOTPYGCCXML/lib/python%(pyshortver)s/site-packages/ ' -configopts += '-DPYPLUSPLUS_PATH=$EBROOTPYPLUSPLUS/lib/python%(pyshortver)s/site-packages/ ' - -buildopts = 'gimli pygimli apps' - -installopts = ' && mkdir -p %(installdir)s/lib/python%(pyshortver)s/site-packages ' -installopts += '&& cp -a ../gimli*/python/. %(installdir)s/lib/python%(pyshortver)s/site-packages ' -installopts += '&& mkdir %(installdir)s/bin ' -installopts += '&& cp ../easybuild_obj/bin/* %(installdir)s/bin' - -sanity_check_paths = { - 'files': [ - 'bin/%s' % - x for x in [ - 'bms2vtk', - 'dc1dinv', - 'dc1dsmooth', - 'fdem1dinv', - 'fdem1dsmooth', - 'harmfit', - 'invlinearmat', - 'mrs1dblock', - 'mrs1dsmooth', - 'mt1dinv', - 'mt1dsmooth', - 'polyfit', - 'ttinv', - 'ttmod']] + - [ - 'lib/libgimli.%s' % - SHLIB_EXT, - 'lib/python%(pyshortver)s/site-packages/pygimli.h'], - 'dirs': ['lib/python%(pyshortver)s/site-packages/%(namelower)s'], -} - -modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'} - -moduleclass = 'geo' diff --git a/p/pyGIMLi/pyGIMLi-20160803-foss-2016a-Python-3.5.1.eb b/p/pyGIMLi/pyGIMLi-20160803-foss-2016a-Python-3.5.1.eb deleted file mode 100644 index fb7e057e..00000000 --- a/p/pyGIMLi/pyGIMLi-20160803-foss-2016a-Python-3.5.1.eb +++ /dev/null @@ -1,85 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'pyGIMLi' -version = '20160803' -commit_id = 'a190c53' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://www.pygimli.org/' -description = """pyGIMLi is an open-source multi-method library for solving inverse - and forward tasks related to geophysical problems. Written in C++ and Python, - it offers both efficiency and flexibility allowing you to quickly build - your own robust inversion applications for the geophysical problem at hand.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://github.com/gimli-org/gimli/archive/'] -sources = ['%s.tar.gz' % commit_id] - -patches = ['%(name)s-%(version)s_openblas.patch'] - -# pyGIMLi is picky about the version of CastXML/pygccxml/pyplusplus -# Check scripts/buildThirdParty.sh -builddependencies = [ - ('CMake', '3.4.3'), - ('CastXML', '20160617'), - ('pygccxml', '20160706', versionsuffix), - ('pyplusplus', '20160707', versionsuffix), -] - -dependencies = [ - ('Python', '3.5.1'), - ('matplotlib', '1.5.1', versionsuffix), - ('pytest', '3.0.1', versionsuffix), - ('Clang', '3.7.1'), - ('Boost', '1.60.0', versionsuffix), - ('zlib', '1.2.8'), - ('Triangle', '1.6'), - ('CppUnit', '1.12.1'), - ('SuiteSparse', '4.5.3', '-METIS-5.1.0'), -] - -separate_build_dir = True - -configopts = '-DBOOST_ROOT=$EBROOTBOOST ' -configopts += '-DBLAS_LIBRARIES=$EBROOTOPENBLAS/lib/libopenblas.%s ' % SHLIB_EXT -configopts += '-DLAPACK_LIBRARIES=$EBROOTOPENBLAS/lib/libopenblas.%s ' % SHLIB_EXT -configopts += '-DCASTXML_EXECUTABLE=$EBROOTCASTXML/bin/castxml ' -configopts += '-DPYGCCXML_PATH=$EBROOTPYGCCXML/lib/python%(pyshortver)s/site-packages/ ' -configopts += '-DPYPLUSPLUS_PATH=$EBROOTPYPLUSPLUS/lib/python%(pyshortver)s/site-packages/ ' - -buildopts = 'gimli pygimli apps' - -installopts = ' && mkdir -p %(installdir)s/lib/python%(pyshortver)s/site-packages ' -installopts += '&& cp -a ../gimli*/python/. %(installdir)s/lib/python%(pyshortver)s/site-packages ' -installopts += '&& mkdir %(installdir)s/bin ' -installopts += '&& cp ../easybuild_obj/bin/* %(installdir)s/bin' - -sanity_check_paths = { - 'files': [ - 'bin/%s' % - x for x in [ - 'bms2vtk', - 'dc1dinv', - 'dc1dsmooth', - 'fdem1dinv', - 'fdem1dsmooth', - 'harmfit', - 'invlinearmat', - 'mrs1dblock', - 'mrs1dsmooth', - 'mt1dinv', - 'mt1dsmooth', - 'polyfit', - 'ttinv', - 'ttmod']] + - [ - 'lib/libgimli.%s' % - SHLIB_EXT, - 'lib/python%(pyshortver)s/site-packages/pygimli.h'], - 'dirs': ['lib/python%(pyshortver)s/site-packages/%(namelower)s'], -} - -modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'} - -moduleclass = 'geo' diff --git a/p/pyTables/pyTables-3.2.2-intel-2015b-Python-2.7.10.eb b/p/pyTables/pyTables-3.2.2-intel-2015b-Python-2.7.10.eb deleted file mode 100644 index c7500dde..00000000 --- a/p/pyTables/pyTables-3.2.2-intel-2015b-Python-2.7.10.eb +++ /dev/null @@ -1,42 +0,0 @@ -easyblock = "PythonPackage" - -name = 'pyTables' -version = '3.2.2' - -homepage = 'http://www.pytables.org' -description = """PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope - with extremely large amounts of data. PyTables is built on top of the HDF5 library, using the Python language and the - NumPy package. It features an object-oriented interface that, combined with C extensions for the performance-critical - parts of the code (generated using Cython), makes it a fast, yet extremely easy to use tool for interactively browse, - process and search very large amounts of data. One important feature of PyTables is that it optimizes memory and disk - resources so that data takes much less space (specially if on-flight compression is used) than other solutions such as - relational or object oriented databases.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'usempi': True} - -source_urls = ['https://github.com/PyTables/PyTables/archive/'] -sources = ['v.%(version)s.tar.gz'] - -patches = ['pyTables-%(version)s-fix-libs.patch'] - -python = 'Python' -pythonver = '2.7.10' -pythonshortver = '.'.join(pythonver.split('.')[0:2]) -versionsuffix = '-%s-%s' % (python, pythonver) - -dependencies = [ - (python, pythonver), - ('numpy', '1.10.4', versionsuffix), - ('numexpr', '2.4.6', versionsuffix), - ('HDF5', '1.8.13'), -] - -sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['pt2to3', 'ptdump', 'ptrepack']], - 'dirs': ['lib/python%s/site-packages' % pythonshortver], -} - -options = {'modulename': 'tables'} - -moduleclass = 'data' diff --git a/p/pyplusplus/pyplusplus-20160707-foss-2016a-Python-2.7.11.eb b/p/pyplusplus/pyplusplus-20160707-foss-2016a-Python-2.7.11.eb deleted file mode 100644 index 8ebd6c8d..00000000 --- a/p/pyplusplus/pyplusplus-20160707-foss-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'pyplusplus' -version = '20160707' -commit_id = '2c6c05b7a7d2' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://bitbucket.org/ompl/pyplusplus' -description = """Py++ is a code generator for Boost.Python that simplifies - writing Python bindings of a C/C++ library - The tool is implemented as a Python module which is controlled by a user script.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://bitbucket.org/ompl/pyplusplus/get/'] -sources = ['%s.zip' % commit_id] - -builddependencies = [('pip', '8.1.2', versionsuffix)] - -dependencies = [ - ('Python', '2.7.11'), - ('pygccxml', '20160706', '-Python-%(pyver)s'), -] - -use_pip = True - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages/%(name)s'], -} - -options = {'modulename': '%(name)s'} - -moduleclass = 'tools' diff --git a/p/pyplusplus/pyplusplus-20160707-foss-2016a-Python-3.5.1.eb b/p/pyplusplus/pyplusplus-20160707-foss-2016a-Python-3.5.1.eb deleted file mode 100644 index b72f894f..00000000 --- a/p/pyplusplus/pyplusplus-20160707-foss-2016a-Python-3.5.1.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'pyplusplus' -version = '20160707' -commit_id = '2c6c05b7a7d2' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://bitbucket.org/ompl/pyplusplus' -description = """Py++ is a code generator for Boost.Python that simplifies - writing Python bindings of a C/C++ library - The tool is implemented as a Python module which is controlled by a user script.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://bitbucket.org/ompl/pyplusplus/get/'] -sources = ['%s.zip' % commit_id] - -dependencies = [ - ('Python', '3.5.1'), - ('pygccxml', '20160706', '-Python-%(pyver)s'), -] - -use_pip = True - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages/%(name)s'], -} - -options = {'modulename': '%(name)s'} - -moduleclass = 'tools' diff --git a/p/python-meep/python-meep-1.4.2-intel-2015b-Python-2.7.9-Meep-1.3.eb b/p/python-meep/python-meep-1.4.2-intel-2015b-Python-2.7.9-Meep-1.3.eb deleted file mode 100644 index 87c6c876..00000000 --- a/p/python-meep/python-meep-1.4.2-intel-2015b-Python-2.7.9-Meep-1.3.eb +++ /dev/null @@ -1,28 +0,0 @@ -name = 'python-meep' -version = '1.4.2' - -homepage = 'https://code.launchpad.net/python-meep' -description = """Python wrapper for the Meep FDTD solver.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True, 'usempi': True} - -source_urls = ["https://launchpad.net/python-meep/1.4/1.4/+download/"] -sources = [SOURCELOWER_TAR] - -patches = ['MPI_destructor_1.3.patch'] - -python = 'Python' -pythonver = '2.7.9' -meep = 'Meep' -meepver = '1.3' -versionsuffix = '-%s-%s-%s-%s' % (python, pythonver, meep, meepver) - -dependencies = [ - (python, pythonver), - (meep, meepver), -] - -builddependencies = [('SWIG', '2.0.12', '-%s-%s' % (python, pythonver))] - -moduleclass = 'devel' diff --git a/q/QBOX/QBOX-r140b-foss-2016a.eb b/q/QBOX/QBOX-r140b-foss-2016a.eb deleted file mode 100644 index 67376312..00000000 --- a/q/QBOX/QBOX-r140b-foss-2016a.eb +++ /dev/null @@ -1,28 +0,0 @@ -easyblock = 'MakeCp' - -name = 'QBOX' -version = 'r140b' - -homepage = 'https://asc.llnl.gov/CORAL-benchmarks/#qbox' -description = 'QBOX benchmark, part of CORAL suite' - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'usempi': True} - -source_urls = ['https://asc.llnl.gov/CORAL-benchmarks/Science/'] -sources = ['qball_%(version)s.tgz'] - -checksums = ['3eef50f376b02f9d569e0d6e761847ce'] - -patches = ['QBOX-%(version)s_fix.patch'] - -files_to_copy = [(['trunk/src/qb-linux_x86_64_intel'], 'bin')] - -start_dir = 'trunk/src' - -sanity_check_paths = { - 'files': ['bin/qb-linux_x86_64_intel'], - 'dirs': [], -} - -moduleclass = 'tools' diff --git a/q/QCA/QCA-2.1.0-foss-2015g.eb b/q/QCA/QCA-2.1.0-foss-2015g.eb deleted file mode 100644 index 5e675bc0..00000000 --- a/q/QCA/QCA-2.1.0-foss-2015g.eb +++ /dev/null @@ -1,28 +0,0 @@ -easyblock = 'CMakeMake' - -name = "QCA" -version = "2.1.0" - -homepage = 'http://delta.affinix.com/qca/' -description = """QCA aims to provide a straightforward and cross-platform crypto API, -using Qt datatypes and conventions. QCA separates the API from the implementation, -using plugins known as Providers""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -# Example URL: http://delta.affinix.com/download/qca/2.1/qca-2.1.0.tar.gz -source_urls = [ - 'http://delta.affinix.com/download/%(namelower)s/%(version_major)s.0'] - -sources = [SOURCELOWER_TAR_GZ] - -builddependencies = [('Qt', '4.8.6'), - ('CMake', '3.3.1') - ] - -sanity_check_paths = { - 'files': ['lib/libqca.so', 'bin/qcatool'], - 'dirs': ['bin', 'lib', 'include'], -} - -moduleclass = 'lib' diff --git a/q/QGIS/QGIS-2.12.3-foss-2015g.eb b/q/QGIS/QGIS-2.12.3-foss-2015g.eb deleted file mode 100644 index a482150b..00000000 --- a/q/QGIS/QGIS-2.12.3-foss-2015g.eb +++ /dev/null @@ -1,53 +0,0 @@ -easyblock = 'CMakeMake' - -name = "QGIS" -version = "2.12.3" - -homepage = 'http://www.qgis.org' -description = """A Free and Open Source Geographic Information System""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = ['http://qgis.org/downloads'] - -sources = [SOURCELOWER_TAR_BZ2] - -builddependencies = [('CMake', '3.3.1')] - -separate_build_dir = True - -python = 'Python' -pyver = '2.7.9' -pysuff = '-%s-%s' % (python, pyver) - -dependencies = [('QCA', '2.1.0'), - ('Qt', '4.8.6'), - ('PROJ_4', '4.9.2'), - ('GEOS', '3.5.0'), - ('SQLite', '3.8.8.1'), - ('GDAL', '2.1.0'), - ('Qwt', '6.1.2'), - ('expat', '2.1.0'), - ('SpatiaLite', '4.3.0a'), - ('SIP', '4.17', pysuff), - ('PyQt', '4.11.4', pysuff), - ('spatialindex', '1.8.5'), - ] - - -configopts = '-DCMAKE_EXE_LINKER_FLAGS=-L$EBROOTSQLITE/lib -DWITH_INTERNAL_SPATIALITE=FALSE -DWITH_PYSPATIALITE=FALSE' -configopts += ' -DSPATIALITE_LIBRARY=$EBROOTSPATIALITE/lib/libspatialite.so -DSPATIALITE_INCLUDE_DIR=$EBROOTSPATIALITE/include ' -configopts += ' -DQCA_INCLUDE_DIR=$EBROOTQCA/include/QtCrypto -DQCA_LIBRARY=$EBROOTQCA/lib/libqca.so ' -configopts += ' -DQWT_INCLUDE_DIR=$EBROOTQWT/include -DQWT_LIBRARY=$EBROOTQWT/lib/libqwt.so ' -configopts += ' -DSPATIALINDEX_LIBRARY=$EBROOTSPATIALINDEX/lib/libspatialindex.so -DWITH_POSTGRESQL=OFF -DWITH_QWTPOLAR=OFF ' -configopts += ' -DSPATIALINDEX_INCLUDE_DIR=$EBROOTSPATIALINDEX/include/spatialindex/ -DGSL_CONFIG=/apps/all/GSL/1.16-intel-2015b/bin/gsl-config ' -configopts += ' -DWITH_BINDINGS=TRUE -DBINDINGS_GLOBAL_INSTALL=TRUE -DWITH_POSTGRESQL=TRUE' - -sanity_check_paths = { - 'files': ['bin/qgis', - 'lib/libqgis_gui.so' - ], - 'dirs': ['include', 'bin', 'lib'], -} - -moduleclass = 'lib' diff --git a/q/QScintilla/QScintilla-2.9.1-foss-2015b.eb b/q/QScintilla/QScintilla-2.9.1-foss-2015b.eb deleted file mode 100644 index 06d6440b..00000000 --- a/q/QScintilla/QScintilla-2.9.1-foss-2015b.eb +++ /dev/null @@ -1,36 +0,0 @@ -name = 'QScintilla' -version = '2.9.1' - -homepage = 'https://www.riverbankcomputing.com/software/qscintilla/intro' -description = """QScintilla is a port to Qt of Neil Hodgson's Scintilla C++ editor control.""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = [ - 'http://sourceforge.net/projects/pyqt/files/%(name)s2/%(name)s-%(version)s'] - -sources = ['%(name)s-gpl-%(version)s.tar.gz'] - -preconfigopts = "cd Qt4Qt5 && " - -prebuildopts = "cd Qt4Qt5 && " - -preinstallopts = "cd Qt4Qt5 && " - -###### WARNING ################### -# -# Missing Python binding compilation! -# For now you have to manually go to the Python source sundirectory -# and do: python configure.py && make -# and copy Qsci.so to the PyQt Python lib /apps/all/PyQt/4.11.4-foss-2015g-Python-2.7.9/lib/python2.7/site-packages/PyQt4/ -# -################################## - -builddependencies = [('Qt', '4.8.6')] - -sanity_check_paths = { - 'files': ['$EBROOTQT/lib/libqscintilla2.so'], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/q/Qt/Qt-4.8.6-foss-2015g.eb b/q/Qt/Qt-4.8.6-foss-2015g.eb deleted file mode 100644 index b100e4d1..00000000 --- a/q/Qt/Qt-4.8.6-foss-2015g.eb +++ /dev/null @@ -1,17 +0,0 @@ -name = 'Qt' -version = '4.8.6' - -homepage = 'http://qt-project.org/' -description = "Qt is a comprehensive cross-platform C++ application framework." - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = [ - 'http://origin.releases.qt-project.org/qt4/source/', - 'http://master.qt-project.org/archive/qt/%(version_major_minor)s/%(version)s/' -] -sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] - -dependencies = [('GLib', '2.40.0')] - -moduleclass = 'devel' diff --git a/q/Qt/Qt-4.8.7-foss-2016a-GLib-2.48.0.eb b/q/Qt/Qt-4.8.7-foss-2016a-GLib-2.48.0.eb deleted file mode 100644 index f03d8c38..00000000 --- a/q/Qt/Qt-4.8.7-foss-2016a-GLib-2.48.0.eb +++ /dev/null @@ -1,26 +0,0 @@ -name = 'Qt' -version = '4.8.7' - -homepage = 'http://qt.io/' -description = "Qt is a comprehensive cross-platform C++ application framework." - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [ - 'http://download.qt.io/official_releases/qt/%(version_major_minor)s/%(version)s/', - 'http://download.qt.io/archive/qt/%(version_major_minor)s/%(version)s/'] -sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] - -patches = ['Qt-%(version)s_phonon-export.patch'] - -glib_ver = '2.48.0' -versionsuffix = '-GLib-%s' % glib_ver - -dependencies = [ - ('GLib', glib_ver), - ('libX11', '1.6.3'), - ('libXt', '1.1.5'), - ('libXrender', '0.9.9'), -] - -moduleclass = 'devel' diff --git a/q/Qt/Qt-4.8.7-intel-2016a-GLib-2.48.0.eb b/q/Qt/Qt-4.8.7-intel-2016a-GLib-2.48.0.eb deleted file mode 100644 index 7aa02ccf..00000000 --- a/q/Qt/Qt-4.8.7-intel-2016a-GLib-2.48.0.eb +++ /dev/null @@ -1,26 +0,0 @@ -name = 'Qt' -version = '4.8.7' - -homepage = 'http://qt.io/' -description = "Qt is a comprehensive cross-platform C++ application framework." - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = [ - 'http://download.qt.io/official_releases/qt/%(version_major_minor)s/%(version)s/', - 'http://download.qt.io/archive/qt/%(version_major_minor)s/%(version)s/'] -sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] - -patches = ['Qt-%(version)s_phonon-export.patch'] - -glib_ver = '2.48.0' -versionsuffix = '-GLib-%s' % glib_ver - -dependencies = [ - ('GLib', glib_ver), - ('libX11', '1.6.3'), - ('libXt', '1.1.5'), - ('libXrender', '0.9.9'), -] - -moduleclass = 'devel' diff --git a/q/Qt5/Qt5-5.6.0-foss-2016a.eb b/q/Qt5/Qt5-5.6.0-foss-2016a.eb deleted file mode 100644 index cdbdce0e..00000000 --- a/q/Qt5/Qt5-5.6.0-foss-2016a.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'EB_Qt' - -name = 'Qt5' -version = '5.6.0' - -homepage = 'http://qt.io/' -description = "Qt is a comprehensive cross-platform C++ application framework." - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [ - 'http://download.qt.io/official_releases/qt/%(version_major_minor)s/%(version)s/single/', - 'http://download.qt.io/archive/qt/%(version_major_minor)s/%(version)s/single/'] -sources = ['qt-everywhere-opensource-src-%(version)s.tar.xz'] - -dependencies = [ - ('GLib', '2.48.0'), - ('libX11', '1.6.3'), - ('libXt', '1.1.5'), - ('libXi', '1.7.6'), - ('xcb-util', '0.4.0'), - ('xcb-util-image', '0.4.0'), - ('xcb-util-keysyms', '0.4.0'), - ('xcb-util-renderutil', '0.3.9'), - ('xcb-util-wm', '0.4.1'), - ('libxkbcommon', '0.6.1'), - ('libXrender', '0.9.9'), - ('fontconfig', '2.11.95'), - ('freetype', '2.6.3'), - ('libXfixes', '5.0.1'), - ('libXcursor', '1.1.14'), - ('libXinerama', '1.1.3'), - ('libXrandr', '1.5.0'), - ('libpng', '1.6.21'), - ('libGLU', '9.0.0', '-Mesa-11.2.1'), -] - -moduleclass = 'devel' diff --git a/q/Qt5/Qt5-5.6.0-intel-2016a.eb b/q/Qt5/Qt5-5.6.0-intel-2016a.eb deleted file mode 100644 index b725cf9f..00000000 --- a/q/Qt5/Qt5-5.6.0-intel-2016a.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'EB_Qt' - -name = 'Qt5' -version = '5.6.0' - -homepage = 'http://qt.io/' -description = "Qt is a comprehensive cross-platform C++ application framework." - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = [ - 'http://download.qt.io/official_releases/qt/%(version_major_minor)s/%(version)s/single/', - 'http://download.qt.io/archive/qt/%(version_major_minor)s/%(version)s/single/'] -sources = ['qt-everywhere-opensource-src-%(version)s.tar.xz'] - -dependencies = [ - ('GLib', '2.48.0'), - ('libX11', '1.6.3'), - ('libXt', '1.1.5'), - ('libXi', '1.7.6'), - ('xcb-util', '0.4.0'), - ('xcb-util-image', '0.4.0'), - ('xcb-util-keysyms', '0.4.0'), - ('xcb-util-renderutil', '0.3.9'), - ('xcb-util-wm', '0.4.1'), - ('libxkbcommon', '0.6.1'), - ('libXrender', '0.9.9'), - ('fontconfig', '2.11.95'), - ('freetype', '2.6.3'), - ('libXfixes', '5.0.1'), - ('libXcursor', '1.1.14'), - ('libXinerama', '1.1.3'), - ('libXrandr', '1.5.0'), - ('libpng', '1.6.21'), - ('libGLU', '9.0.0', '-Mesa-11.2.1'), -] - -moduleclass = 'devel' diff --git a/q/QuantumESPRESSO/QuantumESPRESSO-5.4.0-foss-2015g.eb b/q/QuantumESPRESSO/QuantumESPRESSO-5.4.0-foss-2015g.eb deleted file mode 100644 index 79d25c63..00000000 --- a/q/QuantumESPRESSO/QuantumESPRESSO-5.4.0-foss-2015g.eb +++ /dev/null @@ -1,59 +0,0 @@ -name = 'QuantumESPRESSO' -version = '5.4.0' -versionsuffix = '-test' - -homepage = 'http://www.pwscf.org/' -description = """Quantum ESPRESSO is an integrated suite of computer codes - for electronic-structure calculations and materials modeling at the nanoscale. - It is based on density-functional theory, plane waves, and pseudopotentials - (both norm-conserving and ultrasoft).""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'usempi': True} - -# major part of this list was determined from espresso/install/plugins_list -sources = [ - 'espresso-%(version)s.tar.gz', - 'wannier90-1.2.tar.gz', - 'atomic-%(version)s.tar.gz', - 'neb-%(version)s.tar.gz', - 'PHonon-%(version)s.tar.gz', - # must be downloaded manually from - # http://qe-forge.org/gf/project/q-e/scmsvn/?action=browse&path=%2F%2Acheckout%2A%2Ftags%2FQE-5.2.1%2Fespresso%2Farchive%2Fplumed-1.3-qe.tar.gz&revision=11758 - # gets updated without changes to filename, cfr. http://qe-forge.org/pipermail/q-e-commits/2015-June/007359.html - # 'plumed-1.3-qe-r11758.tar.gz', - 'pwcond-%(version)s.tar.gz', - 'tddfpt-%(version)s.tar.gz', - 'want-2.5.1-base.tar.gz', - 'yambo-3.4.2.tgz', - 'xspectra-%(version)s.tar.gz', -] -# missing_sources = [ -# 'sax-2.0.3.tar.gz', # nowhere to be found -#] -# source_urls = [ -# 'http://files.qe-forge.org/index.php?file=', # all sources, except espresso*.tar.gz -# 'http://qe-forge.org/gf/download/frsrelease/211/968/', # espresso-5.4.0.tar.gz -# 'http://qe-forge.org/gf/download/frsrelease/153/618/', # want-2.5.1-base.tar.gz -# 'http://qe-forge.org/gf/download/frsrelease/208/932/', # yambo-3.4.2.tgz -#] - -patches = [ - 'QuantumESPRESSO-%(version)s_yambo-fixes.patch', -] - -dependency = [ - ('Boost', '1.58.0', '-Python-2.7.9'), -] - -# gipaw excluded due to: configure: error: Cannot compile against this version of Quantum-Espresso -# add plumed and uncomment the lines in sources and checksums if the -# package is downloaded manually -buildopts = 'all' # plumed - -# parallel build tends to fail -parallel = 1 - -modluafooter = 'add_property("state","experimental")' - -moduleclass = 'chem' diff --git a/q/QuantumESPRESSO/QuantumESPRESSO-5.4.0-foss-2016.04.eb b/q/QuantumESPRESSO/QuantumESPRESSO-5.4.0-foss-2016.04.eb deleted file mode 100644 index d81968ff..00000000 --- a/q/QuantumESPRESSO/QuantumESPRESSO-5.4.0-foss-2016.04.eb +++ /dev/null @@ -1,67 +0,0 @@ -name = 'QuantumESPRESSO' -version = '5.4.0' - -homepage = 'http://www.pwscf.org/' -description = """Quantum ESPRESSO is an integrated suite of computer codes - for electronic-structure calculations and materials modeling at the nanoscale. - It is based on density-functional theory, plane waves, and pseudopotentials - (both norm-conserving and ultrasoft).""" - -toolchain = {'name': 'foss', 'version': '2016.04'} -toolchainopts = {'usempi': True} - -# major part of this list was determined from espresso/install/plugins_list -sources = [ - 'espresso-%(version)s.tar.gz', - 'wannier90-1.2.tar.gz', - 'atomic-%(version)s.tar.gz', - 'neb-%(version)s.tar.gz', - 'PHonon-%(version)s.tar.gz', - # must be downloaded manually from - # http://qe-forge.org/gf/project/q-e/scmsvn/?action=browse&path=%2F%2Acheckout%2A%2Ftags%2FQE-5.2.1%2Fespresso%2Farchive%2Fplumed-1.3-qe.tar.gz&revision=11758 - # gets updated without changes to filename, cfr. http://qe-forge.org/pipermail/q-e-commits/2015-June/007359.html - # 'plumed-1.3-qe-r11758.tar.gz', - 'pwcond-%(version)s.tar.gz', - 'tddfpt-%(version)s.tar.gz', - 'want-2.5.1-base.tar.gz', - 'yambo-3.4.2.tgz', - 'xspectra-%(version)s.tar.gz', -] -# missing_sources = [ -# 'sax-2.0.3.tar.gz', # nowhere to be found -#] -# source_urls = [ -# 'http://files.qe-forge.org/index.php?file=', # all sources, except espresso*.tar.gz -# 'http://qe-forge.org/gf/download/frsrelease/211/968/', # espresso-5.4.0.tar.gz -# 'http://qe-forge.org/gf/download/frsrelease/153/618/', # want-2.5.1-base.tar.gz -# 'http://qe-forge.org/gf/download/frsrelease/208/932/', # yambo-3.4.2.tgz -#] - -patches = [ - 'QuantumESPRESSO-%(version)s_yambo-fixes.patch', -] - -# source checksums -# checksums = [ -# '8bb78181b39bd084ae5cb7a512c1cfe7', # espresso-5.4.0.tar.gz -# 'a1e9611b9a82941c23426028d112186e', # wannier90-1.2.tar.gz -# '24dc0d8bf5cf4eb4dc38e1c18a80b3ee', # atomic-5.4.0.tar.gz -# '254f929259fb06036b78c493cf18e5d6', # neb-5.4.0.tar.gz -# 'f641fe9dcf0ec8f1e47d74e3c7c39705', # PHonon-5.4.0.tar.gz -# 'f094031c6d13a0e00022daf4d7c847c7', # plumed-1.3-qe-r11758.tar.gz -# '31c1cd8cd76752833a9205d456093d0a', # pwcond-5.4.0.tar.gz -# '2101533a627644ef467b60d400977eab', # tddfpt-5.4.0.tar.gz -# 'ac365daebbe380bf4019235eacf71079', # want-2.5.1-base.tar.gz -# 'f0820a0f42dfc81ce3811af647bed777', # yambo-3.4.2.tgz -# '95080929c87389cd15cf765048cfc9d2', # xspectra-5.4.0.tar.gz -#] - -# gipaw excluded due to: configure: error: Cannot compile against this version of Quantum-Espresso -# add plumed and uncomment the lines in sources and checksums if the -# package is downloaded manually -buildopts = 'all' # plumed - -# parallel build tends to fail -parallel = 1 - -moduleclass = 'chem' diff --git a/q/QuantumESPRESSO/QuantumESPRESSO-5.4.0-foss-2016b-hybrid.eb b/q/QuantumESPRESSO/QuantumESPRESSO-5.4.0-foss-2016b-hybrid.eb deleted file mode 100644 index 04d7b543..00000000 --- a/q/QuantumESPRESSO/QuantumESPRESSO-5.4.0-foss-2016b-hybrid.eb +++ /dev/null @@ -1,60 +0,0 @@ -name = 'QuantumESPRESSO' -version = '5.4.0' -versionsuffix = '-hybrid' - -homepage = 'http://www.pwscf.org/' -description = """Quantum ESPRESSO is an integrated suite of computer codes - for electronic-structure calculations and materials modeling at the nanoscale. - It is based on density-functional theory, plane waves, and pseudopotentials - (both norm-conserving and ultrasoft).""" - -toolchain = {'name': 'foss', 'version': '2016b'} -toolchainopts = {'usempi': True, 'openmp': True} - -# this list was determined from QE 5.4.0 version release -sources = [ - # Common source - 'espresso-%(version)s.tar.gz', - 'tddfpt-%(version)s.tar.gz', - # Other sources - 'atomic-%(version)s.tar.gz', - 'neb-%(version)s.tar.gz', - 'PHonon-%(version)s.tar.gz', - 'pwcond-%(version)s.tar.gz', - 'xspectra-%(version)s.tar.gz', - 'PWgui-%(version)s.tar.gz', - 'EPW-%(version)s.tar.gz', - 'test-suite-%(version)s.tar.gz', - 'GWW-%(version)s.tar.gz', -] -source_urls = [ - 'http://files.qe-forge.org/index.php?file=', # Almost all - 'http://www.qe-forge.org/gf/download/frsrelease/211/968/', # espresso-5.4.0.tar.gz - # These will not be used because of the 404 signal not found from the - # previous link. - 'http://www.qe-forge.org/gf/download/frsrelease/211/961/', # PWgui-5.4.0.tar.gz - 'http://www.qe-forge.org/gf/download/frsrelease/211/956/', # tddfpt-5.4.0.tar.gz - 'http://www.qe-forge.org/gf/download/frsrelease/211/954/', # atomic-5.4.0.tar.gz - 'http://www.qe-forge.org/gf/download/frsrelease/211/959/', # neb-5.4.0.tar.gz - 'http://www.qe-forge.org/gf/download/frsrelease/211/962/', # PHonon-5.4.0.tar.gz - 'http://www.qe-forge.org/gf/download/frsrelease/211/960/', # pwcond-5.4.0.tar.gz - 'http://www.qe-forge.org/gf/download/frsrelease/211/958/', # xspectra-5.4.0.tar.gz - 'http://www.qe-forge.org/gf/download/frsrelease/211/969/', # EPW-5.4.0.tar.gz - 'http://www.qe-forge.org/gf/download/frsrelease/211/963/', # test-suite-5.4.0.tar.gz - 'http://www.qe-forge.org/gf/download/frsrelease/211/957/', # GWW-5.4.0.tar.gz -] - -# Hybrid option exists only for backward compatibility, use toolchain -# option openmp instead. -hybrid = True -# Patch file to avoid the CPP problem generated by different OSes -patches = ['QuantumESPRESSO-5.4.0_fix-f90rule-gfortran.patch'] - -# packages included in 5.4.0 version of QE. We met errors when try to -# include gipaw, yambo and someother packages. -buildopts = 'all tddfpt neb xspectra ph ' - -# parallel build tends to fail -parallel = 1 - -moduleclass = 'chem' diff --git a/q/Qwt/Qwt-6.1.2-foss-2015g.eb b/q/Qwt/Qwt-6.1.2-foss-2015g.eb deleted file mode 100644 index 8982fc21..00000000 --- a/q/Qwt/Qwt-6.1.2-foss-2015g.eb +++ /dev/null @@ -1,24 +0,0 @@ -name = 'Qwt' -version = '6.1.2' - -homepage = 'http://qwt.sourceforge.net/index.html' -description = """The Qwt library contains GUI Components and utility classes which are primarily -useful for programs with a technical background. Beside a framework for 2D plots it provides scales, -sliders, dials, compasses, thermometers, wheels and knobs to control or display values, arrays, -or ranges of type double.""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = [ - 'http://sourceforge.net/projects/qwt/files/%(name)s2/%(name)s-%(version)s'] - -sources = [SOURCELOWER_TAR_BZ2] - -builddependencies = [('Qt', '4.8.6')] - -sanity_check_paths = { - 'files': ['lib/libqwt.so'], - 'dirs': ['include'], -} - -moduleclass = 'lib' diff --git a/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.2-foss-2016a-R-3.2.3.eb b/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.2-foss-2016a-R-3.2.3.eb deleted file mode 100644 index 73ee7ac3..00000000 --- a/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.2-foss-2016a-R-3.2.3.eb +++ /dev/null @@ -1,155 +0,0 @@ -easyblock = 'Bundle' - -name = 'R-bundle-Bioconductor' -version = '3.2' -versionsuffix = '-R-%(rver)s' - -homepage = 'http://www.r-project.org/' -description = """R is a free software environment for statistical computing and graphics.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -# these are extensions for R -exts_defaultclass = 'RPackage' -exts_filter = ("R -q --no-save", "library(%(ext_name)s)") - -rver = '3.2.3' -versionsuffix = '-R-%s' % rver -dependencies = [('R', rver)] - -name_tmpl = '%(name)s_%(version)s.tar.gz' -ext_options = { - 'source_urls': [ - # package archive - 'http://cran.r-project.org/src/contrib/Archive/%(name)s', - 'http://cran.r-project.org/src/contrib/', # current version of packages - # mirror alternative for current packages - 'http://cran.freestatistics.org/src/contrib', - ], - 'source_tmpl': name_tmpl, -} -bioconductor_options = { - 'source_urls': [ - 'http://www.bioconductor.org/packages/3.2/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/3.2/data/annotation/src/contrib/', - 'http://www.bioconductor.org/packages/3.2/data/experiment/src/contrib/', - ], - 'source_tmpl': name_tmpl, -} - -# CRAN packages on which these Bioconductor packages depend are available in R module on which this depends -# !! order of packages is important !! -exts_list = [ - 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('randomForestSRC', '2.0.7', ext_options), - ('sm', '2.2-5.4', ext_options), - ('psych', '1.5.8', ext_options), - ('pbivnorm', '0.6.0', ext_options), - ('lavaan', '0.5-20', ext_options), - ('matrixcalc', '1.0-3', ext_options), - ('arm', '1.8-6', ext_options), - ('mi', '1.0', ext_options), - ('htmlwidgets', '0.6', ext_options), - ('visNetwork', '0.2.1', ext_options), - ('DiagrammeR', '0.8.2', ext_options), - ('sem', '3.1-6', ext_options), - ('jpeg', '0.1-8', ext_options), - ('sna', '2.3-2', ext_options), - ('glasso', '1.8', ext_options), - ('huge', '1.2.7', ext_options), - ('d3Network', '0.5.2.1', ext_options), - ('ggm', '2.3', ext_options), - ('qgraph', '1.3.2', ext_options), - ('diveRsity', '1.9.89', ext_options), - ('doSNOW', '1.0.14', ext_options), - ('phangorn', '2.0.2', ext_options), -] - -moduleclass = 'lang' diff --git a/r/R/R-3.2.3-foss-2016a.eb b/r/R/R-3.2.3-foss-2016a.eb deleted file mode 100644 index 7f2f4501..00000000 --- a/r/R/R-3.2.3-foss-2016a.eb +++ /dev/null @@ -1,448 +0,0 @@ -name = 'R' -version = '3.2.3' - 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('sm', '2.2-5.4', ext_options), - ('psych', '1.5.8', ext_options), - ('pbivnorm', '0.6.0', ext_options), - ('lavaan', '0.5-20', ext_options), - ('matrixcalc', '1.0-3', ext_options), - ('arm', '1.8-6', ext_options), - ('mi', '1.0', ext_options), - ('htmlwidgets', '0.6', ext_options), - ('visNetwork', '0.2.1', ext_options), - ('DiagrammeR', '0.8.2', ext_options), - ('sem', '3.1-6', ext_options), - ('jpeg', '0.1-8', ext_options), - ('sna', '2.3-2', ext_options), - ('glasso', '1.8', ext_options), - ('huge', '1.2.7', ext_options), - ('d3Network', '0.5.2.1', ext_options), - ('ggm', '2.3', ext_options), - ('qgraph', '1.3.2', ext_options), - ('diveRsity', '1.9.89', ext_options), - ('doSNOW', '1.0.14', ext_options), - ('phangorn', '2.0.2', ext_options), -] - -moduleclass = 'lang' diff --git a/r/R/R-3.2.3-foss-2016b.eb b/r/R/R-3.2.3-foss-2016b.eb deleted file mode 100644 index d65ee937..00000000 --- a/r/R/R-3.2.3-foss-2016b.eb +++ /dev/null @@ -1,453 +0,0 @@ -name = 'R' -version = '3.2.3' - -homepage = 'http://www.r-project.org/' -description = """R is a free software environment for statistical computing and graphics.""" - 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-toolchain = {'name': 'intel', 'version': '2015b'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] - -preconfigopts = 'BLAS_LIBS="$LIBBLAS_MT" LAPACK_LIBS="$LIBLAPACK_MT"' -configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" -# some recommended packages may fail in a parallel build (e.g. Matrix), -# and we're installing them anyway below -configopts += " --with-recommended-packages=no" - -dependencies = [ - ('libreadline', '6.2'), - ('ncurses', '5.9'), - ('libpng', '1.6.9'), # for plotting in R - # Java bindings are built if Java is found, might as well provide it - ('Java', '1.7.0_79', '', True), -] - -name_tmpl = '%(name)s_%(version)s.tar.gz' -ext_options = { - 'source_urls': [ - # package archive - 'http://cran.r-project.org/src/contrib/Archive/%(name)s', - 'http://cran.freestatistics.org/src/contrib', # alternative for packages - # mirror alternative for current packages - 'http://cran.freestatistics.org/src/contrib', - ], - 'source_tmpl': name_tmpl, -} -# Bioconductor packages have a different download url -bioconductor_options = { - 'source_urls': [ - 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/2.14/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/release/data/annotation/src/contrib/', - 'http://www.bioconductor.org/packages/release/data/experiment/src/contrib/', - 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', - 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', - ], - 'source_tmpl': name_tmpl, -} -# !! order of packages is important !! -exts_list = [ - # default libraries, only here to sanity check their presence - 'base', - 'datasets', - 'graphics', - 'grDevices', - 'grid', - 'methods', - 'splines', - 'stats', - 'stats4', - 'tools', - 'utils', - # non-standard libraries, should be specified with fixed versions! - ('Rmpi', '0.6-5', dict(ext_options.items() + - [('patches', ['Rmpi-0.6-5_impi5.patch'])])), - #('stringi', '1.0-1', ext_options), - #('lazyeval', '0.1.10', ext_options), - #('magrittr', '1.5', ext_options), - #('assertthat', '0.1', ext_options), - #('digest', '0.6.8', ext_options), - #('memoise', '0.2.1', ext_options), - #('crayon', '1.3.1', ext_options), - #('praise', '1.0.0', ext_options), - #('', '', ext_options), - #('', '', ext_options), - #('', '', ext_options), - #('', '', ext_options), - #('testthat', '0.11.0', ext_options), - #('R6', '2.1.1', ext_options), - #('BH', '1.60.0-1', ext_options), - #('Rcpp', '0.12.2', ext_options), - #('DBI', '0.2-7', ext_options), - #('dplyr', '0.4.3', ext_options), - #('tidyr', '0.3.1', ext_options), - #('forecast', '6.2', ext_options), - #('KFAS', '1.1.2', ext_options), - #('moments', '0.14', ext_options), - #('snow', '0.4-1', ext_options), - #('doSNOW', '1.0.14', ext_options), - #('data.table', '1.9.6', ext_options), - #('bsts', '0.6.2', ext_options), - #('pbdMPI', '0.2-5', ext_options), - #('RSNNS', '0.4-7', ext_options), - #('XML', '3.98-1.3', ext_options), - #('Mcomp', '2.05', ext_options), - #('Matrix', '1.2-3', ext_options), - #('nnet', '7.3-11', ext_options), - #('h2o', '3.6.0.8', ext_options), - #('darch', '0.10.0', ext_options), - #('deepnet', '0.2', ext_options), - #('timeDate', '3012.100', ext_options), - #('mFilter', '0.1-3', ext_options), - #('caret', '6.0-62', ext_options), - #('irace', '1.04', ext_options), - #('rJava', '0.9-6', ext_options), - #('lattice', '0.20-29', ext_options), - #('minpack.lm', '1.2-0', ext_options), - #('GMDH', '1.1', ext_options), - #('RColorBrewer', '1.0-5', ext_options), - #('latticeExtra', '0.6-26', ext_options), - #('Matrix', '1.1-3', ext_options), - #('png', '0.1-7', ext_options), - #('Rcpp', '0.11.1', ext_options), - #('quadprog', '1.5-5', ext_options), - #('BB', '2014.1-1', ext_options), - #('rlecuyer', '0.3-3', ext_options), - #('MASS', '7.3-33', ext_options), - #('class', '7.3-10', ext_options), - #('e1071', '1.6-3', ext_options), - #('car', '2.0-20', ext_options), - #('colorspace', '1.2-4', ext_options), - #('DEoptimR', '1.0-1', ext_options), - #('robustbase', '0.91-1', ext_options), - #('sp', '1.0-15', ext_options), - #('vcd', '1.3-1', ext_options), - #('snowfall', '1.84-6', ext_options), - #('rpart', '4.1-8', ext_options), - #('randomForest', '4.6-7', ext_options), - #('mice', '2.21', ext_options), - #('nlme', '3.1-117', ext_options), - #('mgcv', '1.7-29', ext_options), - #('logistf', '1.21', ext_options), - #('akima', '0.5-11', ext_options), - #('bitops', '1.0-6', ext_options), - #('boot', '1.3-11', ext_options), - #('cluster', '1.15.2', ext_options), - #('coda', '0.16-1', ext_options), - #('codetools', '0.2-8', ext_options), - #('foreign', '0.8-61', ext_options), - #('survival', '2.37-7', ext_options), - #('gam', '1.09.1', ext_options), - #('gamlss.data', '4.2-7', ext_options), - #('gamlss.dist', '4.2-7', ext_options), - #('hwriter', '1.3', ext_options), - #('KernSmooth', '2.23-12', ext_options), - #('zoo', '1.7-11', ext_options), - #('lmtest', '0.9-34', ext_options), - #('mnormt', '1.4-7', ext_options), - #('mvtnorm', '0.9-99992', ext_options), - #('numDeriv', '2012.9-1', ext_options), - #('pscl', '1.04.4', ext_options), - #('RSQLite', '0.11.4', ext_options), - #('sandwich', '2.3-0', ext_options), - #('sfsmisc', '1.0-25', ext_options), - #('spatial', '7.3-8', ext_options), - #('VGAM', '0.9-4', ext_options), - #('waveslim', '1.7.3', ext_options), - #('xtable', '1.7-3', ext_options), - #('profileModel', '0.5-9', ext_options), - #('brglm', '0.5-9', ext_options), - #('deSolve', '1.10-8', ext_options), - #('tseriesChaos', '0.1-13', ext_options), - #('tseries', '0.10-32', ext_options), - #('neuRosim', '0.2-10', ext_options), - #('fastICA', '1.2-0', ext_options), - #('R.methodsS3', '1.6.1', ext_options), - #('R.oo', '1.18.0', ext_options), - #('R.utils', '1.32.4', ext_options), - #('R.matlab', '3.0.1', ext_options), - #('Rniftilib', '0.0-32', ext_options), - #('iterators', '1.0.7', ext_options), - #('foreach', '1.4.2', ext_options), - #('BBmisc', '1.6', ext_options), - #('digest', '0.6.4', ext_options), - #('base64enc', '0.1-1', ext_options), - #('sendmailR', '1.1-2', ext_options), - #('brew', '1.0-6', ext_options), - #('plyr', '1.8.1', ext_options), - #('stringr', '0.6.2', ext_options), - #('fail', '1.2', ext_options), - #('BatchJobs', '1.2', ext_options), - #('BiocGenerics', '0.10.0', bioconductor_options), - #('Biobase', '2.24.0', bioconductor_options), - #('IRanges', '1.22.8', bioconductor_options), - #('GenomeInfoDb', '1.0.2', bioconductor_options), - #('AnnotationDbi', '1.26.0', bioconductor_options), - #('XVector', '0.4.0', bioconductor_options), - #('zlibbioc', '1.10.0', bioconductor_options), - #('Biostrings', '2.32.0', bioconductor_options), - #('GenomicRanges', '1.16.3', bioconductor_options), - #('Rsamtools', '1.16.0', bioconductor_options), - #('BSgenome', '1.32.0', bioconductor_options), - #('BiocParallel', '0.6.1', bioconductor_options), - #('GenomicAlignments', '1.0.2', bioconductor_options), - #('ShortRead', '1.22.0', bioconductor_options), - #('graph', '1.42.0', bioconductor_options), - #('gbm', '2.1', ext_options), - #('dichromat', '2.0-0', ext_options), - #('Formula', '1.1-1', ext_options), - #('Hmisc', '3.14-4', ext_options), - #('munsell', '0.4.2', ext_options), - #('labeling', '0.2', ext_options), - #('scales', '0.2.4', ext_options), - #('fastcluster', '1.1.13', ext_options), - #('reshape2', '1.4', ext_options), - #('gtable', '0.1.2', ext_options), - #('proto', '0.3-10', ext_options), - #('ggplot2', '1.0.0', ext_options), - #('reshape', '0.8.5', ext_options), - #('gsalib', '2.0', ext_options), - #('ape', '3.1-2', ext_options), - #('igraph', '0.7.1', ext_options), - #('fastmatch', '1.0-4', ext_options), - #('phangorn', '1.99-7', ext_options), - #('gdsfmt', '1.0.4', ext_options), - #('SNPRelate', '0.9.19', ext_options), - #('getopt', '1.20.0', ext_options), - #('miscTools', '0.6-16', ext_options), - #('maxLik', '1.2-0', ext_options), - #('statmod', '1.4.20', ext_options), - #('mlogit', '0.2-4', ext_options), - #('optparse', '1.2.0', ext_options), - #('permute', '0.8-3', ext_options), - #('vegan', '2.0-10', ext_options), - #('gtools', '3.4.1', ext_options), - #('combinat', '0.0-8', ext_options), - #('klaR', '0.6-11', ext_options), -] - -moduleclass = 'lang' diff --git a/r/R/R-3.2.3-intel-2016.01.eb b/r/R/R-3.2.3-intel-2016.01.eb deleted file mode 100644 index eb07c72b..00000000 --- a/r/R/R-3.2.3-intel-2016.01.eb +++ /dev/null @@ -1,231 +0,0 @@ -name = 'R' -version = '3.2.3' - -homepage = 'http://www.r-project.org/' -description = """R is a free software environment for statistical computing and graphics.""" - -toolchain = {'name': 'intel', 'version': '2016.01'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] - -preconfigopts = 'BLAS_LIBS="$LIBBLAS_MT" LAPACK_LIBS="$LIBLAPACK_MT"' -configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" -# some recommended packages may fail in a parallel build (e.g. Matrix), -# and we're installing them anyway below -configopts += " --with-recommended-packages=no" - -dependencies = [ - ('libreadline', '6.3'), - ('ncurses', '5.9'), - ('libpng', '1.6.12'), # for plotting in R - # Java bindings are built if Java is found, might as well provide it - ('Java', '1.7.0_79', '', True), -] - -name_tmpl = '%(name)s_%(version)s.tar.gz' -ext_options = { - 'source_urls': [ - # package archive - 'http://cran.r-project.org/src/contrib/Archive/%(name)s', - 'http://cran.freestatistics.org/src/contrib', # alternative for packages - # mirror alternative for current packages - 'http://cran.freestatistics.org/src/contrib', - ], - 'source_tmpl': name_tmpl, -} -# Bioconductor packages have a different download url -bioconductor_options = { - 'source_urls': [ - 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/2.14/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/release/data/annotation/src/contrib/', - 'http://www.bioconductor.org/packages/release/data/experiment/src/contrib/', - 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', - 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', - ], - 'source_tmpl': name_tmpl, -} -# !! order of packages is important !! -exts_list = [ - # default libraries, only here to sanity check their presence - 'base', - 'datasets', - 'graphics', - 'grDevices', - 'grid', - 'methods', - 'splines', - 'stats', - 'stats4', - 'tools', - 'utils', - # non-standard libraries, should be specified with fixed versions! - ('Rmpi', '0.6-5', dict(ext_options.items() + - [('patches', ['Rmpi-0.6-5_impi5.patch'])])), - #('stringi', '1.0-1', ext_options), - #('lazyeval', '0.1.10', ext_options), - #('magrittr', '1.5', ext_options), - #('assertthat', '0.1', ext_options), - #('digest', '0.6.8', ext_options), - #('memoise', '0.2.1', ext_options), - #('crayon', '1.3.1', ext_options), - #('praise', '1.0.0', ext_options), - #('', '', ext_options), - #('', '', ext_options), - #('', '', ext_options), - #('', '', ext_options), - #('testthat', '0.11.0', ext_options), - #('R6', '2.1.1', ext_options), - #('BH', '1.60.0-1', ext_options), - #('Rcpp', '0.12.2', ext_options), - #('DBI', '0.2-7', ext_options), - #('dplyr', '0.4.3', ext_options), - #('tidyr', '0.3.1', ext_options), - #('forecast', '6.2', ext_options), - #('KFAS', '1.1.2', ext_options), - #('moments', '0.14', ext_options), - #('snow', '0.4-1', ext_options), - #('doSNOW', '1.0.14', ext_options), - #('data.table', '1.9.6', ext_options), - #('bsts', '0.6.2', ext_options), - #('pbdMPI', '0.2-5', ext_options), - #('RSNNS', '0.4-7', ext_options), - #('XML', '3.98-1.3', ext_options), - #('Mcomp', '2.05', ext_options), - #('Matrix', '1.2-3', ext_options), - #('nnet', '7.3-11', ext_options), - #('h2o', '3.6.0.8', ext_options), - #('darch', '0.10.0', ext_options), - #('deepnet', '0.2', ext_options), - #('timeDate', '3012.100', ext_options), - #('mFilter', '0.1-3', ext_options), - #('caret', '6.0-62', ext_options), - #('irace', '1.04', ext_options), - #('rJava', '0.9-6', ext_options), - #('lattice', '0.20-29', ext_options), - #('minpack.lm', '1.2-0', ext_options), - #('GMDH', '1.1', ext_options), - #('RColorBrewer', '1.0-5', ext_options), - #('latticeExtra', '0.6-26', ext_options), - #('Matrix', '1.1-3', ext_options), - #('png', '0.1-7', ext_options), - #('Rcpp', '0.11.1', ext_options), - #('quadprog', '1.5-5', ext_options), - #('BB', '2014.1-1', ext_options), - #('rlecuyer', '0.3-3', ext_options), - #('MASS', '7.3-33', ext_options), - #('class', '7.3-10', ext_options), - #('e1071', '1.6-3', ext_options), - #('car', '2.0-20', ext_options), - #('colorspace', '1.2-4', ext_options), - #('DEoptimR', '1.0-1', ext_options), - #('robustbase', '0.91-1', ext_options), - #('sp', '1.0-15', ext_options), - #('vcd', '1.3-1', ext_options), - #('snowfall', '1.84-6', ext_options), - #('rpart', '4.1-8', ext_options), - #('randomForest', '4.6-7', ext_options), - #('mice', '2.21', ext_options), - #('nlme', '3.1-117', ext_options), - #('mgcv', '1.7-29', ext_options), - #('logistf', '1.21', ext_options), - #('akima', '0.5-11', ext_options), - #('bitops', '1.0-6', ext_options), - #('boot', '1.3-11', ext_options), - #('cluster', '1.15.2', ext_options), - #('coda', '0.16-1', ext_options), - #('codetools', '0.2-8', ext_options), - #('foreign', '0.8-61', ext_options), - #('survival', '2.37-7', ext_options), - #('gam', '1.09.1', ext_options), - #('gamlss.data', '4.2-7', ext_options), - #('gamlss.dist', '4.2-7', ext_options), - #('hwriter', '1.3', ext_options), - #('KernSmooth', '2.23-12', ext_options), - #('zoo', '1.7-11', ext_options), - #('lmtest', '0.9-34', ext_options), - #('mnormt', '1.4-7', ext_options), - #('mvtnorm', '0.9-99992', ext_options), - #('numDeriv', '2012.9-1', ext_options), - #('pscl', '1.04.4', ext_options), - #('RSQLite', '0.11.4', ext_options), - #('sandwich', '2.3-0', ext_options), - #('sfsmisc', '1.0-25', ext_options), - #('spatial', '7.3-8', ext_options), - #('VGAM', '0.9-4', ext_options), - #('waveslim', '1.7.3', ext_options), - #('xtable', '1.7-3', ext_options), - #('profileModel', '0.5-9', ext_options), - #('brglm', '0.5-9', ext_options), - #('deSolve', '1.10-8', ext_options), - #('tseriesChaos', '0.1-13', ext_options), - #('tseries', '0.10-32', ext_options), - #('neuRosim', '0.2-10', ext_options), - #('fastICA', '1.2-0', ext_options), - #('R.methodsS3', '1.6.1', ext_options), - #('R.oo', '1.18.0', ext_options), - #('R.utils', '1.32.4', ext_options), - #('R.matlab', '3.0.1', ext_options), - #('Rniftilib', '0.0-32', ext_options), - #('iterators', '1.0.7', ext_options), - #('foreach', '1.4.2', ext_options), - #('BBmisc', '1.6', ext_options), - #('digest', '0.6.4', ext_options), - #('base64enc', '0.1-1', ext_options), - #('sendmailR', '1.1-2', ext_options), - #('brew', '1.0-6', ext_options), - #('plyr', '1.8.1', ext_options), - #('stringr', '0.6.2', ext_options), - #('fail', '1.2', ext_options), - #('BatchJobs', '1.2', ext_options), - #('BiocGenerics', '0.10.0', bioconductor_options), - #('Biobase', '2.24.0', bioconductor_options), - #('IRanges', '1.22.8', bioconductor_options), - #('GenomeInfoDb', '1.0.2', bioconductor_options), - #('AnnotationDbi', '1.26.0', bioconductor_options), - #('XVector', '0.4.0', bioconductor_options), - #('zlibbioc', '1.10.0', bioconductor_options), - #('Biostrings', '2.32.0', bioconductor_options), - #('GenomicRanges', '1.16.3', bioconductor_options), - #('Rsamtools', '1.16.0', bioconductor_options), - #('BSgenome', '1.32.0', bioconductor_options), - #('BiocParallel', '0.6.1', bioconductor_options), - #('GenomicAlignments', '1.0.2', bioconductor_options), - #('ShortRead', '1.22.0', bioconductor_options), - #('graph', '1.42.0', bioconductor_options), - #('gbm', '2.1', ext_options), - #('dichromat', '2.0-0', ext_options), - #('Formula', '1.1-1', ext_options), - #('Hmisc', '3.14-4', ext_options), - #('munsell', '0.4.2', ext_options), - #('labeling', '0.2', ext_options), - #('scales', '0.2.4', ext_options), - #('fastcluster', '1.1.13', ext_options), - #('reshape2', '1.4', ext_options), - #('gtable', '0.1.2', ext_options), - #('proto', '0.3-10', ext_options), - #('ggplot2', '1.0.0', ext_options), - #('reshape', '0.8.5', ext_options), - #('gsalib', '2.0', ext_options), - #('ape', '3.1-2', ext_options), - #('igraph', '0.7.1', ext_options), - #('fastmatch', '1.0-4', ext_options), - #('phangorn', '1.99-7', ext_options), - #('gdsfmt', '1.0.4', ext_options), - #('SNPRelate', '0.9.19', ext_options), - #('getopt', '1.20.0', ext_options), - #('miscTools', '0.6-16', ext_options), - #('maxLik', '1.2-0', ext_options), - #('statmod', '1.4.20', ext_options), - #('mlogit', '0.2-4', ext_options), - #('optparse', '1.2.0', ext_options), - #('permute', '0.8-3', ext_options), - #('vegan', '2.0-10', ext_options), - #('gtools', '3.4.1', ext_options), - #('combinat', '0.0-8', ext_options), - #('klaR', '0.6-11', ext_options), -] - -moduleclass = 'lang' diff --git a/r/R/R-3.2.3-intel-2016a-libX11-1.6.3.eb b/r/R/R-3.2.3-intel-2016a-libX11-1.6.3.eb deleted file mode 100644 index 0b43d0d2..00000000 --- a/r/R/R-3.2.3-intel-2016a-libX11-1.6.3.eb +++ /dev/null @@ -1,466 +0,0 @@ -name = 'R' -version = '3.2.3' - -libx11 = 'libX11' -libxver = '1.6.3' -versionsuffix = '-%s-%s' % (libx11, libxver) - -homepage = 'http://www.r-project.org/' -description = """R is a free software environment for statistical computing and graphics.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] - -preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' -configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=yes --enable-R-shlib" -# Actually use Tcl/Tk -configopts += ' --with-tcl-config=$EBROOTTCL/lib/tclConfig.sh --with-tk-config=$EBROOTTK/lib/tkConfig.sh ' -# Enable graphics capabilities for plotting. -configopts += " --with-cairo --with-libpng --with-jpeglib --with-libtiff" -# some recommended packages may fail in a parallel build (e.g. Matrix), -# and we're installing them anyway below -configopts += " --with-recommended-packages=no" - -dependencies = [ - (libx11, libxver), - ('libXt', '1.1.5'), - ('libXmu', '1.1.2'), - ('libreadline', '6.3'), - ('ncurses', '6.0'), - ('libpng', '1.6.21'), # for plotting in R - ('libjpeg-turbo', '1.4.2'), # for plottting in R - ('LibTIFF', '4.0.6'), # for plotting in R - ('cairo', '1.14.6'), # for plotting in R - # Java bindings are built if Java is found, might as well provide it - ('Java', '1.8.0_72', '', True), - ('Tcl', '8.6.4'), # for tcltk - ('Tk', '8.6.4', versionsuffix), # for tcltk - ('cURL', '7.47.0'), # for RCurl - ('libxml2', '2.9.3'), # for XML - ('GDAL', '2.0.2'), # for rgdal - ('PROJ', '4.9.2'), # for rgdal -] - -name_tmpl = '%(name)s_%(version)s.tar.gz' -ext_options = { - 'source_urls': [ - # package archive - 'http://cran.r-project.org/src/contrib/Archive/%(name)s', - 'http://cran.r-project.org/src/contrib/', # current version of packages - # mirror alternative for current packages - 'http://cran.freestatistics.org/src/contrib', - ], - 'source_tmpl': name_tmpl, -} - -# !! order of packages is important !! -# packages updated on January 21st 2016 -exts_list = [ - 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('visNetwork', '0.2.1', ext_options), - ('DiagrammeR', '0.8.2', ext_options), - ('sem', '3.1-6', ext_options), - ('jpeg', '0.1-8', ext_options), - ('sna', '2.3-2', ext_options), - ('glasso', '1.8', dict(ext_options.items() + \ - [('patches', [('glasso-1.8-ifort-no-fixed.patch', 1)])])), - ('huge', '1.2.7', ext_options), - ('d3Network', '0.5.2.1', ext_options), - ('ggm', '2.3', ext_options), - ('qgraph', '1.3.2', ext_options), - ('diveRsity', '1.9.89', ext_options), - ('doSNOW', '1.0.14', ext_options), - ('phangorn', '2.0.2', ext_options), -] - -moduleclass = 'lang' diff --git a/r/R/R-3.2.3-intel-2016a.eb b/r/R/R-3.2.3-intel-2016a.eb deleted file mode 100644 index e1ea2955..00000000 --- a/r/R/R-3.2.3-intel-2016a.eb +++ /dev/null @@ -1,454 +0,0 @@ -name = 'R' -version = '3.2.3' - -homepage = 'http://www.r-project.org/' -description = """R is a free software environment for statistical computing and graphics.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] - -preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' -configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" -# some recommended packages may fail in a parallel build (e.g. Matrix), -# and we're installing them anyway below -configopts += " --with-recommended-packages=no" - -dependencies = [ - ('libreadline', '6.3'), - ('ncurses', '6.0'), - ('libpng', '1.6.21'), # for plotting in R - ('libjpeg-turbo', '1.4.2'), # for plottting in R - # Java bindings are built if Java is found, might as well provide it - ('Java', '1.8.0_72', '', True), - ('Tcl', '8.6.4'), # for tcltk - ('Tk', '8.6.4', '-no-X11'), # for tcltk - ('cURL', '7.47.0'), # for RCurl - ('libxml2', '2.9.3'), # for XML - ('GDAL', '2.0.2'), # for rgdal - ('PROJ', '4.9.2'), # for rgdal -] - -name_tmpl = '%(name)s_%(version)s.tar.gz' -ext_options = { - 'source_urls': [ - # package archive - 'http://cran.r-project.org/src/contrib/Archive/%(name)s', - 'http://cran.r-project.org/src/contrib/', # current version of packages - # mirror alternative for current packages - 'http://cran.freestatistics.org/src/contrib', - ], - 'source_tmpl': name_tmpl, -} - - -# !! order of packages is important !! -# packages updated on January 21st 2016 -exts_list = [ - # default libraries, only here to sanity check their presence - 'base', - 'datasets', - 'graphics', - 'grDevices', - 'grid', - 'methods', - 'splines', - 'stats', - 'stats4', - 'tools', - 'utils', - # non-standard libraries, should be specified with fixed versions! - ('Rmpi', '0.6-5', dict(ext_options.items() + - [('patches', ['Rmpi-0.6-5_impi5.patch'])])), - ('abind', '1.4-3', ext_options), - ('magic', '1.5-6', ext_options), - ('geometry', '0.3-6', dict(ext_options.items() + - [('patches', ['geometry-0.3-4-icc.patch'])])), - ('bit', '1.1-12', ext_options), - ('filehash', '2.3', ext_options), - ('ff', '2.2-13', ext_options), - ('bnlearn', '3.9', ext_options), - ('bootstrap', '2015.2', ext_options), - ('combinat', '0.0-8', ext_options), - ('deal', '1.2-37', ext_options), - 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('scatterplot3d', '0.3-36', ext_options), - ('SparseM', '1.7', ext_options), - ('tripack', '1.3-7', ext_options), - ('irace', '1.07', ext_options), - ('rJava', '0.9-7', ext_options), - ('lattice', '0.20-33', ext_options), - ('RColorBrewer', '1.1-2', ext_options), - ('latticeExtra', '0.6-26', ext_options), - ('Matrix', '1.2-3', ext_options), - ('png', '0.1-7', ext_options), - ('Rcpp', '0.12.2', ext_options), - ('RcppArmadillo', '0.6.400.2.2', ext_options), - ('plyr', '1.8.3', ext_options), - ('pROC', '1.8', ext_options), - ('quadprog', '1.5-5', ext_options), - ('BB', '2014.10-1', ext_options), - ('BBmisc', '1.9', ext_options), - ('fail', '1.3', ext_options), - ('rlecuyer', '0.3-4', ext_options), - ('snow', '0.4-1', ext_options), - ('MASS', '7.3-45', ext_options), - ('tree', '1.0-36', ext_options), - ('pls', '2.5-0', ext_options), - ('class', '7.3-14', ext_options), - ('e1071', '1.6-7', ext_options), - ('nnet', '7.3-11', ext_options), - ('nlme', '3.1-122', ext_options), - ('minqa', '1.2.4', ext_options), - 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('sm', '2.2-5.4', ext_options), - ('psych', '1.5.8', ext_options), - ('pbivnorm', '0.6.0', ext_options), - ('lavaan', '0.5-20', ext_options), - ('matrixcalc', '1.0-3', ext_options), - ('arm', '1.8-6', ext_options), - ('mi', '1.0', ext_options), - ('htmlwidgets', '0.6', ext_options), - ('visNetwork', '0.2.1', ext_options), - ('DiagrammeR', '0.8.2', ext_options), - ('sem', '3.1-6', ext_options), - ('jpeg', '0.1-8', ext_options), - ('sna', '2.3-2', ext_options), - ('glasso', '1.8', dict(ext_options.items() + \ - [('patches', [('glasso-1.8-ifort-no-fixed.patch', 1)])])), - ('huge', '1.2.7', ext_options), - ('d3Network', '0.5.2.1', ext_options), - ('ggm', '2.3', ext_options), - ('qgraph', '1.3.2', ext_options), - ('diveRsity', '1.9.89', ext_options), - ('doSNOW', '1.0.14', ext_options), - ('phangorn', '2.0.2', ext_options), -] - -moduleclass = 'lang' diff --git a/r/R/R-3.3.1-foss-2016a.eb b/r/R/R-3.3.1-foss-2016a.eb deleted file mode 100644 index d66abd90..00000000 --- a/r/R/R-3.3.1-foss-2016a.eb +++ /dev/null @@ -1,479 +0,0 @@ -name = 'R' -version = '3.3.1' - -homepage = 'http://www.r-project.org/' -description = """R is a free software environment for statistical computing and graphics.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] - -preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' -configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" -# some recommended packages may fail in a parallel build (e.g. Matrix), -# and we're installing them anyway below -configopts += " --with-recommended-packages=no" - -dependencies = [ - ('libreadline', '6.3'), - ('ncurses', '6.0'), - ('bzip2', '1.0.6'), - ('XZ', '5.2.2'), - ('zlib', '1.2.8'), - ('SQLite', '3.13.0'), - ('PCRE', '8.38'), - ('libpng', '1.6.23'), # for plotting in R - ('libjpeg-turbo', '1.5.0'), # for plottting in R - ('LibTIFF', '4.0.6'), - # Java bindings are built if Java is found, might as well provide it - ('Java', '1.8.0_92', '', True), - ('Tcl', '8.6.5'), # for tcltk - ('Tk', '8.6.5'), # for tcltk - ('cURL', '7.49.1'), # for RCurl - ('libxml2', '2.9.4'), # for XML - ('GDAL', '2.1.0'), # for rgdal - ('PROJ', '4.9.2'), # for rgdal - ('GMP', '6.1.1'), # for igraph - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - # ('OpenSSL', '1.0.2h'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -name_tmpl = '%(name)s_%(version)s.tar.gz' -ext_options = { - 'source_urls': [ - # package archive - 'http://cran.r-project.org/src/contrib/Archive/%(name)s', - 'http://cran.r-project.org/src/contrib/', # current version of packages - # mirror alternative for current packages - 'http://cran.freestatistics.org/src/contrib', - ], - 'source_tmpl': name_tmpl, -} - - -# !! order of packages is important !! -# packages updated on July 8th 2016 -exts_list = [ - # default libraries, only here to sanity check their presence - 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('mi', '1.0', ext_options), - ('htmlwidgets', '0.6', ext_options), - ('visNetwork', '1.0.1', ext_options), - ('DiagrammeR', '0.8.2', ext_options), - ('sem', '3.1-7', ext_options), - ('jpeg', '0.1-8', ext_options), - ('sna', '2.3-2', ext_options), - ('glasso', '1.8', ext_options), - ('huge', '1.2.7', ext_options), - ('d3Network', '0.5.2.1', ext_options), - ('ggm', '2.3', ext_options), - ('qgraph', '1.3.4', ext_options), - ('diveRsity', '1.9.89', ext_options), - ('doSNOW', '1.0.14', ext_options), - ('phangorn', '2.0.4', ext_options), - ('geepack', '1.2-0.2', ext_options), - ('lubridate', '1.5.6', ext_options), - ('biom', '0.3.12', ext_options), - ('pim', '2.0.0.2', ext_options), - ('minpack.lm', '1.2-1', ext_options), - ('rootSolve', '1.7', ext_options), - ('diagram', '1.6.3', ext_options), - ('FME', '1.3.5', ext_options), -] - -moduleclass = 'lang' diff --git a/r/R/R-3.3.1-foss-2016b.eb b/r/R/R-3.3.1-foss-2016b.eb deleted file mode 100644 index b5e41c57..00000000 --- a/r/R/R-3.3.1-foss-2016b.eb +++ /dev/null @@ -1,479 +0,0 @@ -name = 'R' -version = '3.3.1' - 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('mi', '1.0', ext_options), - ('htmlwidgets', '0.6', ext_options), - ('visNetwork', '1.0.1', ext_options), - ('DiagrammeR', '0.8.2', ext_options), - ('sem', '3.1-7', ext_options), - ('jpeg', '0.1-8', ext_options), - ('sna', '2.3-2', ext_options), - ('glasso', '1.8', ext_options), - ('huge', '1.2.7', ext_options), - ('d3Network', '0.5.2.1', ext_options), - ('ggm', '2.3', ext_options), - ('qgraph', '1.3.4', ext_options), - ('diveRsity', '1.9.89', ext_options), - ('doSNOW', '1.0.14', ext_options), - ('phangorn', '2.0.4', ext_options), - ('geepack', '1.2-0.2', ext_options), - ('lubridate', '1.5.6', ext_options), - ('biom', '0.3.12', ext_options), - ('pim', '2.0.0.2', ext_options), - ('minpack.lm', '1.2-1', ext_options), - ('rootSolve', '1.7', ext_options), - ('diagram', '1.6.3', ext_options), - ('FME', '1.3.5', ext_options), -] - -moduleclass = 'lang' diff --git a/r/R/R-3.3.1-intel-2016b.eb b/r/R/R-3.3.1-intel-2016b.eb deleted file mode 100644 index 12bef60a..00000000 --- a/r/R/R-3.3.1-intel-2016b.eb +++ /dev/null @@ -1,485 +0,0 @@ -name = 'R' -version = '3.3.1' - -homepage = 'http://www.r-project.org/' -description = """R is a free software environment for statistical computing and graphics.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] - -preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' -configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" -# some recommended packages may fail in a parallel build (e.g. Matrix), -# and we're installing them anyway below -configopts += " --with-recommended-packages=no" - -dependencies = [ - ('libreadline', '6.3'), - ('ncurses', '6.0'), - ('bzip2', '1.0.6'), - ('XZ', '5.2.2'), - ('zlib', '1.2.8'), - ('SQLite', '3.13.0'), - ('PCRE', '8.38'), - ('libpng', '1.6.23'), # for plotting in R - ('libjpeg-turbo', '1.5.0'), # for plottting in R - ('LibTIFF', '4.0.6'), - # Java bindings are built if Java is found, might as well provide it - ('Java', '1.8.0_92', '', True), - ('Tcl', '8.6.5'), # for tcltk - ('Tk', '8.6.5'), # for tcltk - ('cURL', '7.49.1'), # for RCurl - ('libxml2', '2.9.4'), # for XML - ('GDAL', '2.1.0'), # for rgdal - ('PROJ', '4.9.2'), # for rgdal - ('GMP', '6.1.1'), # for igraph - # OS dependency should be preferred if the os version is more recent then this version, - # it's nice to have an up to date openssl for security reasons - # ('OpenSSL', '1.0.2h'), -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -name_tmpl = '%(name)s_%(version)s.tar.gz' -ext_options = { - 'source_urls': [ - # package archive - 'http://cran.r-project.org/src/contrib/Archive/%(name)s', - 'http://cran.r-project.org/src/contrib/', # current version of packages - # mirror alternative for current packages - 'http://cran.freestatistics.org/src/contrib', - ], - 'source_tmpl': name_tmpl, -} - - -# !! order of packages is important !! -# packages updated on July 8th 2016 -exts_list = [ - # default libraries, only here to sanity check their presence - 'base', - 'datasets', - 'graphics', - 'grDevices', - 'grid', - 'methods', - 'splines', - 'stats', - 'stats4', - 'tools', - 'utils', - # non-standard libraries, should be specified with fixed versions! - ('Rmpi', '0.6-6', dict(ext_options.items() + - [('patches', ['Rmpi-0.6-5_impi5.patch'])])), - ('abind', '1.4-3', ext_options), - ('magic', '1.5-6', ext_options), - ('geometry', '0.3-6', dict(ext_options.items() + - [('patches', ['geometry-0.3-4-icc.patch'])])), - ('bit', '1.1-12', ext_options), - ('filehash', '2.3', ext_options), - ('ff', '2.2-13', ext_options), - ('bnlearn', '4.0', ext_options), - ('bootstrap', '2015.2', ext_options), - ('combinat', '0.0-8', ext_options), - ('deal', '1.2-37', ext_options), - ('fdrtool', '1.2.15', ext_options), - ('formatR', '1.4', ext_options), - ('gtools', '3.5.0', ext_options), - ('gdata', '2.17.0', ext_options), - ('GSA', '1.03', ext_options), - ('highr', '0.6', ext_options), - ('infotheo', '1.2.0', ext_options), - ('lars', '1.2', ext_options), - ('lazy', '1.2-15', ext_options), - 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('flexmix', '2.3-13', ext_options), - ('prabclus', '2.2-6', ext_options), - ('diptest', '0.75-7', ext_options), - ('trimcluster', '0.1-2', ext_options), - ('fpc', '2.1-10', ext_options), - ('BiasedUrn', '1.07', ext_options), - ('TeachingDemos', '2.10', ext_options), - ('kohonen', '2.0.19', ext_options), - ('base64', '2.0', ext_options), - ('doRNG', '1.6', ext_options), - ('nleqslv', '3.0.2', ext_options), - ('RGCCA', '2.0', ext_options), - ('pheatmap', '1.0.8', ext_options), - ('openxlsx', '3.0.0', ext_options), - ('pvclust', '2.0-0', ext_options), - ('RCircos', '1.1.3', ext_options), - ('lambda.r', '1.1.7', ext_options), - ('futile.options', '1.0.0', ext_options), - ('futile.logger', '1.4.1', ext_options), - ('VennDiagram', '1.6.17', ext_options), - ('xlsxjars', '0.6.1', ext_options), - ('xlsx', '0.5.7', ext_options), - ('forecast', '7.1', dict(ext_options.items() + \ - [('patches', ['forecast-6.1_icpc-wd308.patch'])])), - ('fma', '2.2', ext_options), - ('expsmooth', '2.3', ext_options), - ('fpp', '0.5', ext_options), - ('maptools', '0.8-39', ext_options), - ('deldir', '0.1-12', ext_options), - ('tensor', '1.5', ext_options), - ('polyclip', '1.5-6', ext_options), - ('goftest', '1.0-3', ext_options), - ('spatstat', '1.46-1', ext_options), - ('rgdal', '1.1-10', ext_options), - ('gdalUtils', '2.0.1.7', ext_options), - ('pracma', '1.9.3', ext_options), - ('RCurl', '1.95-4.8', ext_options), - ('bio3d', '2.2-4', ext_options), - ('AUC', '0.3.0', ext_options), - ('interpretR', '0.2.4', ext_options), - ('cvAUC', '1.1.0', ext_options), - ('SuperLearner', '2.0-19', ext_options), - ('lpSolve', '5.6.13', ext_options), - ('mediation', '4.4.5', ext_options), - ('caret', '6.0-70', ext_options), - ('adabag', '4.1', ext_options), - ('parallelMap', '1.3', ext_options), - ('ParamHelpers', '1.7', ext_options), - ('ggvis', '0.4.2', ext_options), - ('mlr', '2.8', ext_options), - ('unbalanced', '2.0', ext_options), - ('RSNNS', '0.4-7', ext_options), - ('abc.data', '1.0', ext_options), - ('abc', '2.1', ext_options), - ('lhs', '0.13', ext_options), - ('tensorA', '0.36', ext_options), - ('EasyABC', '1.5', ext_options), - ('shape', '1.4.2', ext_options), - ('whisker', '0.3-2', ext_options), - ('rstudioapi', '0.6', ext_options), - ('roxygen2', '5.0.1', ext_options), - ('git2r', '0.15.0', ext_options), - ('rversions', '1.0.2', ext_options), - ('withr', '1.0.2', ext_options), - ('devtools', '1.12.0', ext_options), - ('Rook', '1.1-1', ext_options), - ('rjson', '0.2.15', ext_options), - ('Cairo', '1.5-9', ext_options), - ('RMTstat', '0.3', ext_options), - ('Lmoments', '1.2-3', ext_options), - ('distillery', '1.0-2', ext_options), - ('extRemes', '2.0-7', ext_options), - ('pixmap', '0.4-11', ext_options), - ('tkrplot', '0.0-23', ext_options), - ('misc3d', '0.8-4', ext_options), - ('multicool', '0.1-9', dict(ext_options.items() + \ - [('patches', [('multicool-0.1-9_icpc-wd308.patch', 1)])])), - ('ks', '1.10.4', ext_options), - ('logcondens', '2.1.4', ext_options), - ('Iso', '0.0-17', ext_options), - ('penalized', '0.9-47', ext_options), - ('clusterRepro', '0.5-1.1', ext_options), - ('randomForestSRC', '2.2.0', ext_options), - ('sm', '2.2-5.4', ext_options), - ('psych', '1.6.6', ext_options), - ('pbivnorm', '0.6.0', ext_options), - ('lavaan', '0.5-20', ext_options), - ('matrixcalc', '1.0-3', ext_options), - ('arm', '1.8-6', ext_options), - ('mi', '1.0', ext_options), - ('htmlwidgets', '0.6', ext_options), - ('visNetwork', '1.0.1', ext_options), - ('DiagrammeR', '0.8.2', ext_options), - ('sem', '3.1-7', ext_options), - ('jpeg', '0.1-8', ext_options), - ('sna', '2.3-2', ext_options), - ('glasso', '1.8', dict(ext_options.items() + \ - [('patches', [('glasso-1.8-ifort-no-fixed.patch', 1)])])), - ('huge', '1.2.7', ext_options), - ('d3Network', '0.5.2.1', ext_options), - ('ggm', '2.3', ext_options), - ('qgraph', '1.3.4', ext_options), - ('diveRsity', '1.9.89', ext_options), - ('doSNOW', '1.0.14', ext_options), - ('phangorn', '2.0.4', ext_options), - ('geepack', '1.2-0.2', ext_options), - ('lubridate', '1.5.6', ext_options), - ('biom', '0.3.12', ext_options), - ('pim', '2.0.0.2', ext_options), - ('minpack.lm', '1.2-1', ext_options), - ('rootSolve', '1.7', ext_options), - ('diagram', '1.6.3', ext_options), - ('FME', '1.3.5', ext_options), -] - -moduleclass = 'lang' diff --git a/r/RELION/RELION-1.3-intel-2015b.eb b/r/RELION/RELION-1.3-intel-2015b.eb deleted file mode 100644 index 48bef7bf..00000000 --- a/r/RELION/RELION-1.3-intel-2015b.eb +++ /dev/null @@ -1,41 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'RELION' -version = '1.3' - -homepage = 'http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page' -description = """RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer - program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class - averages in electron cryo-microscopy (cryo-EM).""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['http://www2.mrc-lmb.cam.ac.uk/groups/scheres/18jun14'] -sources = [SOURCELOWER_TAR_BZ2] - -patches = ['RELION-%(version)s_fltk-config.patch'] - -pythonversion = '-Python-2.7.8' - -builddependencies = [ - ('xextproto', '7.3.0'), -] -dependencies = [ - ('FFTW', '3.3.4'), - ('FLTK', '1.3.2'), - ('libX11', '1.6.2', pythonversion), - ('fontconfig', '2.11.1'), - ('libXft', '2.3.2'), - ('libXext', '1.3.2', pythonversion), - ('libXinerama', '1.1.3'), -] - -# RELION expects FLTK to be in external/fltk-1.3.0 -configopts = [ - '--enable-mpi --enable-openmp && ln -s $EBROOTFLTK/include external/fltk-1.3.0'] -buildopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11 -lXft -lfontconfig -lXext -lXinerama" ' -# users expect the maingui binary to be called relion -installopts = " && cp %(installdir)s/bin/relion_maingui %(installdir)s/bin/relion " - - -moduleclass = 'bio' diff --git a/r/ROOT/ROOT-v5.34.01-intel-2015a.eb b/r/ROOT/ROOT-v5.34.01-intel-2015a.eb deleted file mode 100644 index a65a7332..00000000 --- a/r/ROOT/ROOT-v5.34.01-intel-2015a.eb +++ /dev/null @@ -1,39 +0,0 @@ -name = 'ROOT' -version = 'v5.34.01' - -homepage = 'http://root.cern.ch/drupal/' -description = """The ROOT system provides a set of OO frameworks with all the functionality - needed to handle and analyze large amounts of data in a very efficient way.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'pic': True} - -sources = ['%s_%s.source.tar.gz' % (name.lower(), version)] -source_urls = ['ftp://root.cern.ch/root/'] -patches = [ - 'configure_FftwFromMkl_28.patch', - 'ROOT-%(version)s_recent-ifort.patch', -] - -python = 'Python' -pyver = '2.7.3' - -dependencies = [ - ('GSL', '1.15'), - ('libxml2', '2.8.0', '-%s-%s' % (python, pyver)), - (python, pyver), -] - -# architecture -arch = 'linuxx8664icc' - -# disable features -configopts = ' --disable-xft --disable-x11 --disable-xrootd --disable-mysql' -# enable features -configopts += ' --enable-unuran --enable-table --enable-explicitlink --enable-minuit2 --enable-roofit' -configopts += ' --with-gsl-incdir=$EBROOTGSL/include/gsl --with-gsl-libdir=$EBROOTGSL/lib' -configopts += ' --with-fftw3-incdir=$EBROOTIMKL/mkl/include/fftw --with-fftw3-libdir=$EBROOTIMKL/mkl/lib/intel64' -configopts += ' --with-xml-incdir=$EBROOTLIBXML2/include/libxml2/libxml --with-xml-libdir=$EBROOTLIBXML2/lib' -configopts += ' --with-python-libdir=$EBROOTPYTHON/lib' - -moduleclass = 'data' diff --git a/r/ROOT/ROOT-v5.34.26-intel-2015a.eb b/r/ROOT/ROOT-v5.34.26-intel-2015a.eb deleted file mode 100644 index 05baffbd..00000000 --- a/r/ROOT/ROOT-v5.34.26-intel-2015a.eb +++ /dev/null @@ -1,57 +0,0 @@ -name = 'ROOT' -version = 'v5.34.26' - -homepage = 'http://root.cern.ch/drupal/' -description = """The ROOT system provides a set of OO frameworks with all the functionality - needed to handle and analyze large amounts of data in a very efficient way.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'pic': True} - -sources = ['%(namelower)s_%(version)s.source.tar.gz'] -source_urls = ['ftp://root.cern.ch/root/'] -patches = [ - 'configure_FftwFromMkl_28.patch', - 'ROOT-v5_recent-ifort.patch', - 'ROOT-v5.34.26_libX.patch', -] - -python = 'Python' -pyver = '2.7.9' - -dependencies = [ - ('GSL', '1.16'), - ('Mesa', '10.4.5', '-%s-%s' % (python, pyver)), - ('libxml2', '2.9.2', '-%s-%s' % (python, pyver)), - ('PCRE', '8.36'), - ('CFITSIO', '3.37'), - ('freetype', '2.5.5'), - (python, pyver), - ('zlib', '1.2.8'), - ('libXft', '2.3.2', '-libX11-1.6.3'), - ('libXpm', '3.5.11'), - ('libXext', '1.3.3'), -] - -# use external ZLIB -preconfigopts = 'env ZLIB=$EBROOTZLIB ' - -# architecture -arch = 'linuxx8664icc' - -# disable features -configopts = ' --disable-xrootd --disable-mysql --disable-krb5 --disable-odbc ' -configopts += ' --disable-oracle --disable-pgsql --disable-qt --disable-sqlite' -# enable features -configopts += ' --enable-unuran --enable-table --enable-explicitlink --enable-minuit2 --enable-roofit' -configopts += ' --with-gsl-incdir=$EBROOTGSL/include/gsl --with-gsl-libdir=$EBROOTGSL/lib' -configopts += ' --with-fftw3-incdir=$MKLROOT/mkl/include/fftw --with-fftw3-libdir=$MKLROOT/mkl/lib/intel64' -configopts += ' --with-xml-incdir=$EBROOTLIBXML2/include/libxml2/libxml --with-xml-libdir=$EBROOTLIBXML2/lib' -configopts += ' --with-python-libdir=$EBROOTPYTHON/lib' -configopts += ' --with-cfitsio-incdir=$EBROOTCFITSIO/include --with-cfitsio-libdir=$EBROOTCFITSIO/lib' -configopts += ' --with-opengl-incdir=$EBROOTMESA/include --with-opengl-libdir=$EBROOTMESA/lib' -configopts += ' --with-x11-libdir=$EBROOTLIBX11/lib --with-xext-libdir=$EBROOTLIBXEXT/lib' -configopts += ' --with-xft-libdir=$EBROOTLIBXFT/lib' -configopts += ' --with-xpm-incdir=$EBROOTLIBXPM/include --with-xpm-libdir=$EBROOTLIBXPM/lib' - -moduleclass = 'data' diff --git a/r/ROOT/ROOT-v5.34.34-intel-2015b-Python-2.7.10.eb b/r/ROOT/ROOT-v5.34.34-intel-2015b-Python-2.7.10.eb deleted file mode 100644 index eb76e738..00000000 --- a/r/ROOT/ROOT-v5.34.34-intel-2015b-Python-2.7.10.eb +++ /dev/null @@ -1,37 +0,0 @@ -name = 'ROOT' -version = 'v5.34.34' - -homepage = 'http://root.cern.ch/drupal/' -description = """The ROOT system provides a set of OO frameworks with all the functionality - needed to handle and analyze large amounts of data in a very efficient way.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True} - -sources = ['%(namelower)s_%(version)s.source.tar.gz'] -source_urls = ['ftp://root.cern.ch/root/'] -patches = [ - 'configure_FftwFromMkl_28.patch', -] - -pyver = '2.7.10' -versionsuffix = '-Python-%s' % pyver -dependencies = [ - ('GSL', '1.16'), - ('libxml2', '2.9.3', versionsuffix), - ('Python', pyver), -] - -# architecture -arch = 'linuxx8664icc' - -# disable features -configopts = ' --disable-xft --disable-x11 --disable-xrootd --disable-mysql' -# enable features -configopts += ' --enable-unuran --enable-table --enable-explicitlink --enable-minuit2 --enable-roofit' -configopts += ' --with-gsl-incdir=$EBROOTGSL/include/gsl --with-gsl-libdir=$EBROOTGSL/lib' -configopts += ' --with-fftw3-incdir=$EBROOTIMKL/mkl/include/fftw --with-fftw3-libdir=$EBROOTIMKL/mkl/lib/intel64' -configopts += ' --with-xml-incdir=$EBROOTLIBXML2/include/libxml2/libxml --with-xml-libdir=$EBROOTLIBXML2/lib' -configopts += ' --with-python-libdir=$EBROOTPYTHON/lib' - -moduleclass = 'data' diff --git a/r/ROOT/ROOT-v5.34.34-intel-2016a-Python-2.7.11.eb b/r/ROOT/ROOT-v5.34.34-intel-2016a-Python-2.7.11.eb deleted file mode 100644 index fc6f1871..00000000 --- a/r/ROOT/ROOT-v5.34.34-intel-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,55 +0,0 @@ -name = 'ROOT' -version = 'v5.34.34' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://root.cern.ch/drupal/' -description = """The ROOT system provides a set of OO frameworks with all the functionality - needed to handle and analyze large amounts of data in a very efficient way.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'pic': True} - -sources = ['%(namelower)s_%(version)s.source.tar.gz'] -source_urls = ['ftp://root.cern.ch/root/'] -patches = [ - 'configure_FftwFromMkl_28.patch', - 'ROOT-v5_recent-ifort.patch', - 'ROOT-v5.34.26_libX.patch', -] - -dependencies = [ - ('GSL', '1.16'), - ('Mesa', '11.1.2'), - ('libxml2', '2.9.3'), - ('PCRE', '8.38'), - ('CFITSIO', '3.38'), - ('freetype', '2.6.2'), - ('Python', '2.7.11'), - ('zlib', '1.2.8'), - ('libXft', '2.3.2'), - ('libXpm', '3.5.11'), - ('libXext', '1.3.3'), -] - -# use external ZLIB -preconfigopts = 'env ZLIB=$EBROOTZLIB ' - -# architecture -arch = 'linuxx8664icc' - -# disable features -configopts = ' --disable-xrootd --disable-mysql --disable-krb5 --disable-odbc ' -configopts += ' --disable-oracle --disable-pgsql --disable-qt --disable-sqlite' -# enable features -configopts += ' --enable-unuran --enable-table --enable-explicitlink --enable-minuit2 --enable-roofit' -configopts += ' --with-gsl-incdir=$EBROOTGSL/include/gsl --with-gsl-libdir=$EBROOTGSL/lib' -configopts += ' --with-fftw3-incdir=$MKLROOT/mkl/include/fftw --with-fftw3-libdir=$MKLROOT/mkl/lib/intel64' -configopts += ' --with-xml-incdir=$EBROOTLIBXML2/include/libxml2/libxml --with-xml-libdir=$EBROOTLIBXML2/lib' -configopts += ' --with-python-libdir=$EBROOTPYTHON/lib' -configopts += ' --with-cfitsio-incdir=$EBROOTCFITSIO/include --with-cfitsio-libdir=$EBROOTCFITSIO/lib' -configopts += ' --with-opengl-incdir=$EBROOTMESA/include --with-opengl-libdir=$EBROOTMESA/lib' -configopts += ' --with-x11-libdir=$EBROOTLIBX11/lib --with-xext-libdir=$EBROOTLIBXEXT/lib' -configopts += ' --with-xft-libdir=$EBROOTLIBXFT/lib' -configopts += ' --with-xpm-incdir=$EBROOTLIBXPM/include --with-xpm-libdir=$EBROOTLIBXPM/lib' - -moduleclass = 'data' diff --git a/r/ROOT/ROOT-v5.34.36-intel-2016a-Python-2.7.11.eb b/r/ROOT/ROOT-v5.34.36-intel-2016a-Python-2.7.11.eb deleted file mode 100644 index 7d110631..00000000 --- a/r/ROOT/ROOT-v5.34.36-intel-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,55 +0,0 @@ -name = 'ROOT' -version = 'v5.34.36' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://root.cern.ch/drupal/' -description = """The ROOT system provides a set of OO frameworks with all the functionality - needed to handle and analyze large amounts of data in a very efficient way.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'pic': True} - -sources = ['%(namelower)s_%(version)s.source.tar.gz'] -source_urls = ['ftp://root.cern.ch/root/'] -patches = [ - 'configure_FftwFromMkl_28.patch', - 'ROOT-v5_recent-ifort.patch', - 'ROOT-v5.34.26_libX.patch', -] - -dependencies = [ - ('GSL', '2.1'), - ('Mesa', '11.1.2'), - ('libxml2', '2.9.3'), - ('PCRE', '8.38'), - ('CFITSIO', '3.38'), - ('freetype', '2.6.2'), - ('Python', '2.7.11'), - ('zlib', '1.2.8'), - ('libXft', '2.3.2'), - ('libXpm', '3.5.11'), - ('libXext', '1.3.3'), -] - -# use external ZLIB -preconfigopts = 'env ZLIB=$EBROOTZLIB ' - -# architecture -arch = 'linuxx8664icc' - -# disable features -configopts = ' --disable-xrootd --disable-mysql --disable-krb5 --disable-odbc ' -configopts += ' --disable-oracle --disable-pgsql --disable-qt --disable-sqlite' -# enable features -configopts += ' --enable-unuran --enable-table --enable-explicitlink --enable-minuit2 --enable-roofit' -configopts += ' --with-gsl-incdir=$EBROOTGSL/include/gsl --with-gsl-libdir=$EBROOTGSL/lib' -configopts += ' --with-fftw3-incdir=$MKLROOT/mkl/include/fftw --with-fftw3-libdir=$MKLROOT/mkl/lib/intel64' -configopts += ' --with-xml-incdir=$EBROOTLIBXML2/include/libxml2/libxml --with-xml-libdir=$EBROOTLIBXML2/lib' -configopts += ' --with-python-libdir=$EBROOTPYTHON/lib' -configopts += ' --with-cfitsio-incdir=$EBROOTCFITSIO/include --with-cfitsio-libdir=$EBROOTCFITSIO/lib' -configopts += ' --with-opengl-incdir=$EBROOTMESA/include --with-opengl-libdir=$EBROOTMESA/lib' -configopts += ' --with-x11-libdir=$EBROOTLIBX11/lib --with-xext-libdir=$EBROOTLIBXEXT/lib' -configopts += ' --with-xft-libdir=$EBROOTLIBXFT/lib' -configopts += ' --with-xpm-incdir=$EBROOTLIBXPM/include --with-xpm-libdir=$EBROOTLIBXPM/lib' - -moduleclass = 'data' diff --git a/r/RSEM/RSEM-1.2.30-foss-2016a.eb b/r/RSEM/RSEM-1.2.30-foss-2016a.eb deleted file mode 100644 index c0cdb7f9..00000000 --- a/r/RSEM/RSEM-1.2.30-foss-2016a.eb +++ /dev/null @@ -1,36 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'RSEM' -version = '1.2.30' - -homepage = 'http://deweylab.github.io/RSEM/' -description = """RNA-Seq by Expectation-Maximization""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://github.com/deweylab/RSEM/archive/'] -sources = ['v%(version)s.tar.gz'] - -patches = ['RSEM-%(version)s_makefiles.patch'] - -skipsteps = ['configure'] -installopts = "prefix=%(installdir)s" - -dependencies = [ - ('ncurses', '6.0'), - ('zlib', '1.2.8'), -] - -sanity_check_paths = { - 'files': [ - 'bin/rsem-calculate-expression', - 'bin/rsem-plot-model', - 'bin/rsem-plot-transcript-wiggles', - 'bin/rsem-bam2wig', - 'bin/rsem-generate-data-matrix', - 'bin/rsem-run-em', - 'bin/convert-sam-for-rsem'], - 'dirs': ['bin/samtools-1.3'], -} - -moduleclass = 'bio' diff --git a/r/RSEM/RSEM-1.2.30-intel-2016b.eb b/r/RSEM/RSEM-1.2.30-intel-2016b.eb deleted file mode 100644 index 1ae68d15..00000000 --- a/r/RSEM/RSEM-1.2.30-intel-2016b.eb +++ /dev/null @@ -1,36 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'RSEM' -version = '1.2.30' - -homepage = 'http://deweylab.github.io/RSEM/' -description = """RNA-Seq by Expectation-Maximization""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = ['https://github.com/deweylab/RSEM/archive/'] -sources = ['v%(version)s.tar.gz'] - -patches = ['RSEM-%(version)s_makefiles.patch'] - -skipsteps = ['configure'] -installopts = "prefix=%(installdir)s" - -dependencies = [ - ('ncurses', '6.0'), - ('zlib', '1.2.8'), -] - -sanity_check_paths = { - 'files': [ - 'bin/rsem-calculate-expression', - 'bin/rsem-plot-model', - 'bin/rsem-plot-transcript-wiggles', - 'bin/rsem-bam2wig', - 'bin/rsem-generate-data-matrix', - 'bin/rsem-run-em', - 'bin/convert-sam-for-rsem'], - 'dirs': ['bin/samtools-1.3'], -} - -moduleclass = 'bio' diff --git a/r/RSEM/RSEM-1.3.0-foss-2016b.eb b/r/RSEM/RSEM-1.3.0-foss-2016b.eb deleted file mode 100644 index 163ff688..00000000 --- a/r/RSEM/RSEM-1.3.0-foss-2016b.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'RSEM' -version = '1.3.0' - -homepage = 'http://deweylab.github.io/RSEM/' -description = """RNA-Seq by Expectation-Maximization""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = ['https://github.com/deweylab/RSEM/archive/'] -sources = ['v%(version)s.tar.gz'] - -patches = ['RSEM-%(version)s_makefiles.patch'] - -skipsteps = ['configure'] -installopts = "prefix=%(installdir)s" - -dependencies = [ - ('ncurses', '6.0'), - ('zlib', '1.2.8'), - ('Perl', '5.24.0'), - ('R', '3.3.1'), -] - -sanity_check_paths = { - 'files': [ - 'bin/rsem-calculate-expression', - 'bin/rsem-plot-model', - 'bin/rsem-plot-transcript-wiggles', - 'bin/rsem-bam2wig', - 'bin/rsem-generate-data-matrix', - 'bin/rsem-run-em', - 'bin/convert-sam-for-rsem'], - 'dirs': ['bin/samtools-1.3'], -} - -moduleclass = 'bio' diff --git a/r/Rosetta/Rosetta-2015.31.58019-intel-2015a.eb b/r/Rosetta/Rosetta-2015.31.58019-intel-2015a.eb deleted file mode 100644 index 10b2a8fd..00000000 --- a/r/Rosetta/Rosetta-2015.31.58019-intel-2015a.eb +++ /dev/null @@ -1,20 +0,0 @@ -name = 'Rosetta' -version = '2015.31.58019' - -homepage = 'https://www.rosettacommons.org' -description = """Rosetta is the premier software suite for modeling macromolecular structures. As a flexible, -multi-purpose application, it includes tools for structure prediction, design, and remodeling of proteins and -nucleic acids.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'usempi': True} - -sources = ['%(namelower)s_src_%(version)s_bundle.tgz'] - -builddependencies = [('SCons', '2.3.6', '-Python-2.7.9')] - -modextravars = { - 'ROSETTA3_DB': '$root/database', -} - -moduleclass = 'bio' diff --git a/r/Rosetta/Rosetta-2016.13.58602-foss-2016a.eb b/r/Rosetta/Rosetta-2016.13.58602-foss-2016a.eb deleted file mode 100644 index 86250d92..00000000 --- a/r/Rosetta/Rosetta-2016.13.58602-foss-2016a.eb +++ /dev/null @@ -1,20 +0,0 @@ -name = 'Rosetta' -version = '2016.13.58602' - -homepage = 'https://www.rosettacommons.org' -description = """Rosetta is the premier software suite for modeling macromolecular structures. As a flexible, -multi-purpose application, it includes tools for structure prediction, design, and remodeling of proteins and -nucleic acids.""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'usempi': True} - -sources = ['%(namelower)s_src_%(version)s_bundle.tgz'] - -builddependencies = [('SCons', '2.4.1', '-Python-2.7.11')] - -modextravars = { - 'ROSETTA3_DB': '$root/database', -} - -moduleclass = 'bio' diff --git a/r/Rosetta/Rosetta-3.7-foss-2016b.eb b/r/Rosetta/Rosetta-3.7-foss-2016b.eb deleted file mode 100644 index 00858b73..00000000 --- a/r/Rosetta/Rosetta-3.7-foss-2016b.eb +++ /dev/null @@ -1,16 +0,0 @@ -name = 'Rosetta' -version = '3.7' - -homepage = 'https://www.rosettacommons.org' -description = """Rosetta is the premier software suite for modeling macromolecular structures. As a flexible, -multi-purpose application, it includes tools for structure prediction, design, and remodeling of proteins and -nucleic acids.""" - -toolchain = {'name': 'foss', 'version': '2016b'} -toolchainopts = {'usempi': True} - -sources = ['%(namelower)s_src_%(version)s_bundle.tgz'] - -builddependencies = [('SCons', '2.5.0', '-Python-2.7.12')] - -moduleclass = 'bio' diff --git a/r/Rust/Rust-1.12.0-foss-2016b.eb b/r/Rust/Rust-1.12.0-foss-2016b.eb deleted file mode 100644 index 04ee893a..00000000 --- a/r/Rust/Rust-1.12.0-foss-2016b.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Rust' -version = '1.12.0' - -homepage = 'https://www.rust-lang.org' -description = """Rust is a systems programming language that runs blazingly fast, prevents segfaults, - and guarantees thread safety.""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = ['https://static.rust-lang.org/dist/'] -sources = ['rustc-%(version)s-src.tar.gz'] - -builddependencies = [('Python', '2.7.12'), ('CMake', '3.6.2')] - -sanity_check_paths = { - 'files': ['bin/rustc', 'bin/rustdoc'], - 'dirs': ['share/doc', 'share/man', 'lib/rustlib'], -} - -moduleclass = 'lang' diff --git a/r/Rust/Rust-1.12.1-foss-2016b.eb b/r/Rust/Rust-1.12.1-foss-2016b.eb deleted file mode 100644 index ed54478e..00000000 --- a/r/Rust/Rust-1.12.1-foss-2016b.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Rust' -version = '1.12.1' - -homepage = 'https://www.rust-lang.org' -description = """Rust is a systems programming language that runs blazingly fast, prevents segfaults, - and guarantees thread safety.""" - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = ['https://static.rust-lang.org/dist/'] -sources = ['rustc-%(version)s-src.tar.gz'] - -builddependencies = [('Python', '2.7.12'), ('CMake', '3.6.2')] - -sanity_check_paths = { - 'files': ['bin/rustc', 'bin/rustdoc'], - 'dirs': ['share/doc', 'share/man', 'lib/rustlib'], -} - -moduleclass = 'lang' diff --git a/r/randrproto/randrproto-1.5.0-foss-2016a.eb b/r/randrproto/randrproto-1.5.0-foss-2016a.eb deleted file mode 100644 index c71e0ea4..00000000 --- a/r/randrproto/randrproto-1.5.0-foss-2016a.eb +++ /dev/null @@ -1,23 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'randrproto' -version = '1.5.0' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = "Xrandr protocol and ancillary headers" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_PROTO_SOURCE] - -sanity_check_paths = { - 'files': [ - 'include/X11/extensions/%s' % - x for x in [ - 'randr.h', - 'randrproto.h']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/r/randrproto/randrproto-1.5.0-intel-2016a.eb b/r/randrproto/randrproto-1.5.0-intel-2016a.eb deleted file mode 100644 index f9e80400..00000000 --- a/r/randrproto/randrproto-1.5.0-intel-2016a.eb +++ /dev/null @@ -1,23 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'randrproto' -version = '1.5.0' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = "Xrandr protocol and ancillary headers" - -toolchain = {'name': 'intel', 'version': '2016a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [XORG_PROTO_SOURCE] - -sanity_check_paths = { - 'files': [ - 'include/X11/extensions/%s' % - x for x in [ - 'randr.h', - 'randrproto.h']], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/s/SAMtools/SAMtools-1.3-foss-2015g.eb b/s/SAMtools/SAMtools-1.3-foss-2015g.eb deleted file mode 100644 index e266f407..00000000 --- a/s/SAMtools/SAMtools-1.3-foss-2015g.eb +++ /dev/null @@ -1,32 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -## -name = 'SAMtools' -version = '1.3' - -homepage = 'http://www.htslib.org/' -description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, - including sorting, merging, indexing and generating alignments in a per-position format.""" - -toolchain = {'name': 'foss', 'version': '2015g'} -toolchainopts = {'optarch': True, 'pic': True} - -source_urls = [ - 'https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] -sources = [SOURCELOWER_TAR_BZ2] - -# Patch Makefile to link against zlib provided by EB -patches = ['SAMtools-1.3_Makefile.patch'] - -dependencies = [ - ('ncurses', '5.9'), - ('zlib', '1.2.8'), -] - -moduleclass = 'bio' diff --git a/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2015b.eb b/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2015b.eb deleted file mode 100644 index d1cadc70..00000000 --- a/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2015b.eb +++ /dev/null @@ -1,14 +0,0 @@ -name = 'SCOTCH' -version = '6.0.0_esmumps' - -homepage = 'http://gforge.inria.fr/projects/scotch/' -description = """Software package and libraries for sequential and parallel graph partitioning, -static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True} - -source_urls = ['https://gforge.inria.fr/frs/download.php/31832/'] -sources = ['%(namelower)s_%(version)s.tar.gz'] - -moduleclass = 'math' diff --git a/s/SCOTCH/SCOTCH-6.0.3-intel-2015b.eb b/s/SCOTCH/SCOTCH-6.0.3-intel-2015b.eb deleted file mode 100644 index f5b3d410..00000000 --- a/s/SCOTCH/SCOTCH-6.0.3-intel-2015b.eb +++ /dev/null @@ -1,14 +0,0 @@ -name = 'SCOTCH' -version = '6.0.3' - -homepage = 'http://gforge.inria.fr/projects/scotch/' -description = """Software package and libraries for sequential and parallel graph partitioning, -static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True} - -source_urls = ['http://gforge.inria.fr/frs/download.php/file/34099/'] -sources = ['%(namelower)s_%(version)s.tar.gz'] - -moduleclass = 'math' diff --git a/s/SCons/SCons-2.3.6-intel-2015b-Python-2.7.9.eb b/s/SCons/SCons-2.3.6-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index 7df82af2..00000000 --- a/s/SCons/SCons-2.3.6-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,26 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'SCons' -version = '2.3.6' - -homepage = 'http://www.scons.org/' -description = "SCons is a software construction tool." - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] - -python = 'Python' -pyver = '2.7.9' -versionsuffix = '-%s-%s' % (python, pyver) -dependencies = [(python, pyver)] - -sanity_check_paths = { - 'files': ['bin/scons', 'bin/scons-time', 'bin/sconsign'], - 'dirs': ['lib/%(namelower)s-%(version)s/%(name)s'], -} - -options = {'modulename': False} - -moduleclass = 'devel' diff --git a/s/SCons/SCons-2.5.1-intel-2015b-Python-2.7.11.eb b/s/SCons/SCons-2.5.1-intel-2015b-Python-2.7.11.eb deleted file mode 100644 index 7f6625e2..00000000 --- a/s/SCons/SCons-2.5.1-intel-2015b-Python-2.7.11.eb +++ /dev/null @@ -1,26 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'SCons' -version = '2.5.1' - -homepage = 'http://www.scons.org/' -description = "SCons is a software construction tool." - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] - -python = 'Python' -pyver = '2.7.11' -versionsuffix = '-%s-%s' % (python, pyver) -dependencies = [(python, pyver)] - -sanity_check_paths = { - 'files': ['bin/scons', 'bin/scons-time', 'bin/sconsign'], - 'dirs': ['lib/%(namelower)s-%(version)s/%(name)s'], -} - -options = {'modulename': False} - -moduleclass = 'devel' diff --git a/s/SHORE/SHORE-0.9.3-foss-2016a.eb b/s/SHORE/SHORE-0.9.3-foss-2016a.eb deleted file mode 100644 index 4078e01a..00000000 --- a/s/SHORE/SHORE-0.9.3-foss-2016a.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'SHORE' -version = '0.9.3' - -homepage = "http://1001genomes.org/software/shore.html" -description = """SHORE, for Short Read, is a mapping and analysis pipeline for short read data produced on the Illumina platform. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://sourceforge.net/projects/shore/files/'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '--with-mpi' - -dependencies = [ - ('XZ', '5.2.2'), - ('zlib', '1.2.8'), - ('GSL', '1.16'), # GSL 2.1 does not work. - ('Boost', '1.61.0'), -] - -sanity_check_paths = { - 'files': ['bin/shore', 'bin/shore-mpi', 'lib/libshore.a'], - 'dirs': ['include', 'lib'], -} - -moduleclass = 'bio' diff --git a/s/SIONlib/SIONlib-1.6.1-tools-intel-2015b.eb b/s/SIONlib/SIONlib-1.6.1-tools-intel-2015b.eb deleted file mode 100644 index c7bd7158..00000000 --- a/s/SIONlib/SIONlib-1.6.1-tools-intel-2015b.eb +++ /dev/null @@ -1,45 +0,0 @@ -## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2016 Juelich Supercomputing Centre, Germany -# Authors:: Markus Geimer -# License:: 3-clause BSD -## - -easyblock = 'ConfigureMake' - -name = 'SIONlib' -version = '1.6.1' -# Provide a stripped-down version with renamed symbols for tools, -# see description for further details -versionsuffix = '-tools' - -homepage = 'http://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html' -description = """SIONlib is a scalable I/O library for parallel access to task-local files. - The library not only supports writing and reading binary data to or from several thousands of - processors into a single or a small number of physical files, but also provides global open - and close functions to access SIONlib files in parallel. This package provides a stripped-down - installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols - to avoid conflicts when an application using SIONlib itself is linked against a tool requiring - a different SIONlib version.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True} - -sources = ['sionlib-%(version)sl.tar.gz'] -source_urls = [ - 'http://apps.fz-juelich.de/jsc/sionlib/download.php?version=%(version)sl'] - -checksums = [ - '57208e08309cf8892fe3daee90567d21', # sionlib-1.6.1l.tar.gz -] - -configopts = '--disable-cxx --disable-fortran --disable-ompi --compiler=intel' - -sanity_check_paths = { - 'files': ['bin/sionconfig'] + [ - 'lib/lib%s_64.a' % - x for x in [ - 'lsioncom', 'lsiongen', 'lsionser']], 'dirs': []} - -moduleclass = 'lib' diff --git a/s/SIP/SIP-4.16.4-foss-2015g-Python-2.7.9.eb b/s/SIP/SIP-4.16.4-foss-2015g-Python-2.7.9.eb deleted file mode 100644 index d058936d..00000000 --- a/s/SIP/SIP-4.16.4-foss-2015g-Python-2.7.9.eb +++ /dev/null @@ -1,35 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Bart Verleye -# Center for eResearch, Auckland -easyblock = 'ConfigureMakePythonPackage' - -name = 'SIP' -version = '4.16.4' - -homepage = 'http://www.riverbankcomputing.com/software/sip/' -description = """SIP is a tool that makes it very easy to create Python bindings for C and C++ libraries.""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [ - 'http://sourceforge.net/projects/pyqt/files/sip/sip-%(version)s'] - -python = 'Python' -pyver = '2.7.9' -versionsuffix = '-%s-%s' % (python, pyver) - -dependencies = [(python, pyver)] - -configopts = "configure.py" - -skipsteps = ['sanitycheck'] - -python_siteconfig_path = "$EBROOTPYTHON/site-packages" - -sanity_check_paths = { - 'files': ['/apps/all/Python/2.7.9-foss-2015g/lib/python2.7/site-packages/sipconfig.py'], - 'dirs': [], -} - -moduleclass = 'lang' diff --git a/s/SIP/SIP-4.17-foss-2015g-Python-2.7.9.eb b/s/SIP/SIP-4.17-foss-2015g-Python-2.7.9.eb deleted file mode 100644 index 89badca9..00000000 --- a/s/SIP/SIP-4.17-foss-2015g-Python-2.7.9.eb +++ /dev/null @@ -1,35 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Bart Verleye -# Center for eResearch, Auckland -easyblock = 'ConfigureMakePythonPackage' - -name = 'SIP' -version = '4.17' - -homepage = 'http://www.riverbankcomputing.com/software/sip/' -description = """SIP is a tool that makes it very easy to create Python bindings for C and C++ libraries.""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [ - 'http://sourceforge.net/projects/pyqt/files/sip/sip-%(version)s'] - -python = 'Python' -pyver = '2.7.9' -versionsuffix = '-%s-%s' % (python, pyver) - -dependencies = [(python, pyver)] - -configopts = "configure.py" - -skipsteps = ['sanitycheck'] - -python_siteconfig_path = "$EBROOTPYTHON/site-packages" - -sanity_check_paths = { - 'files': ['/apps/all/Python/2.7.9-foss-2015g/lib/python2.7/site-packages/sipconfig.py'], - 'dirs': [], -} - -moduleclass = 'lang' diff --git a/s/SLEPc/SLEPc-3.5.3-intel-2015a-Python-2.7.9.eb b/s/SLEPc/SLEPc-3.5.3-intel-2015a-Python-2.7.9.eb deleted file mode 100644 index 5941a716..00000000 --- a/s/SLEPc/SLEPc-3.5.3-intel-2015a-Python-2.7.9.eb +++ /dev/null @@ -1,22 +0,0 @@ -name = 'SLEPc' -version = '3.5.3' -versionsuffix = '-Python-2.7.9' - -homepage = 'http://www.grycap.upv.es/slepc/' -description = """SLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of - large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either - standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial - SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'usempi': True} - -source_urls = [ - 'http://www.grycap.upv.es/slepc/download/download.php?filename='] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [('PETSc', '3.5.3', versionsuffix)] - -petsc_arch = 'arch-linux2-c-opt' - -moduleclass = 'numlib' diff --git a/s/SLEPc/SLEPc-3.6.2-intel-2015b-Python-2.7.11.eb b/s/SLEPc/SLEPc-3.6.2-intel-2015b-Python-2.7.11.eb deleted file mode 100644 index ecd1ae1e..00000000 --- a/s/SLEPc/SLEPc-3.6.2-intel-2015b-Python-2.7.11.eb +++ /dev/null @@ -1,22 +0,0 @@ -name = 'SLEPc' -version = '3.6.2' -versionsuffix = '-Python-2.7.11' - -homepage = 'http://www.grycap.upv.es/slepc/' -description = """SLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of - large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either - standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial - SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'usempi': True} - -source_urls = [ - 'http://www.grycap.upv.es/slepc/download/download.php?filename='] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [('PETSc', '3.6.3', versionsuffix)] - -petsc_arch = 'installed-arch-linux2-c-opt' - -moduleclass = 'numlib' diff --git a/s/SPRNG/SPRNG-2.0b-foss-2016a.eb b/s/SPRNG/SPRNG-2.0b-foss-2016a.eb deleted file mode 100644 index 59be5269..00000000 --- a/s/SPRNG/SPRNG-2.0b-foss-2016a.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'MakeCp' - -name = 'SPRNG' -version = '2.0b' - -homepage = 'http://www.sprng.org/' -description = "Scalable Parallel Pseudo Random Number Generators Library" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'usempi': True} - -source_urls = ['http://www.sprng.org/Version2.0/'] -sources = ['%(namelower)s%(version)s.tar.gz'] - -patches = ['SPRNG-2.0_fix-metropolis-test.patch'] - -dependencies = [('GMP', '6.1.0')] - -buildopts = 'PLAT=INTEL MPIDEF="-DSPRNG_MPI" CC="$CC" F77="$F77" PMLCGDEF="-DUSE_PMLCG" GMPLIB="-L$EBROOTGMP/lib -lgmp" FFXN="-DAdd_"' - -# does not support parallel build -parallel = 1 - -files_to_copy = [ - (['lib/libsprng.a'], 'lib'), - (['include/interface.h', 'include/sprng.h', 'include/sprng_f.h'], 'include'), -] - -sanity_check_paths = { - 'files': ["lib/libsprng.a"], - 'dirs': [], -} - -moduleclass = 'lib' diff --git a/s/SQLite/SQLite-3.10.1-foss-2015g.eb b/s/SQLite/SQLite-3.10.1-foss-2015g.eb deleted file mode 100644 index b9968d7b..00000000 --- a/s/SQLite/SQLite-3.10.1-foss-2015g.eb +++ /dev/null @@ -1,39 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'SQLite' -version = '3.10.1' - -homepage = 'http://www.sqlite.org/' -description = 'SQLite: SQL Database Engine in a C Library' - -toolchain = {'name': 'foss', 'version': '2015g'} - -# eg. https://www.sqlite.org/2016/sqlite-autoconf-3100100.tar.gz -source_urls = ['http://www.sqlite.org/2016/'] -version_str = '%(version_major)s' + ''.join('%02d' % int(x) - for x in version.split('.')[2:]) + '00' -sources = ['sqlite-autoconf-3100100.tar.gz'] - -dependencies = [ - ('libreadline', '6.3'), - ('Tcl', '8.6.3'), -] - -sanity_check_paths = { - 'files': ['bin/sqlite3'], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb b/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb deleted file mode 100644 index ddd427cd..00000000 --- a/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb +++ /dev/null @@ -1,47 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'SQLite' -version = '3.8.10.2' - -homepage = 'http://www.sqlite.org/' -description = 'SQLite: SQL Database Engine in a C Library' - -toolchain = {'name': 'foss', 'version': '2015a'} - -# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz -source_urls = ['http://www.sqlite.org/2015/'] -version_str = '%(version_major)s' + ''.join('%02d' % int(x) - for x in version.split('.')[1:]) -sources = ['sqlite-autoconf-%s.tar.gz' % version_str] - -dependencies = [ - ('libreadline', '6.3'), - ('Tcl', '8.6.4'), -] - -parallel = 1 - -sanity_check_paths = { - 'files': [ - 'bin/sqlite3', - 'include/sqlite3ext.h', - 'include/sqlite3.h', - 'lib/libsqlite3.a', - 'lib/libsqlite3.%s' % - SHLIB_EXT], - 'dirs': ['lib/pkgconfig'], -} - -moduleclass = 'devel' diff --git a/s/SQLite/SQLite-3.8.10.2-foss-2015b.eb b/s/SQLite/SQLite-3.8.10.2-foss-2015b.eb deleted file mode 100644 index 9f76c1dc..00000000 --- a/s/SQLite/SQLite-3.8.10.2-foss-2015b.eb +++ /dev/null @@ -1,47 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'SQLite' -version = '3.8.10.2' - -homepage = 'http://www.sqlite.org/' -description = 'SQLite: SQL Database Engine in a C Library' - -toolchain = {'name': 'foss', 'version': '2015b'} - -# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz -source_urls = ['http://www.sqlite.org/2015/'] -version_str = '%(version_major)s' + ''.join('%02d' % int(x) - for x in version.split('.')[1:]) -sources = ['sqlite-autoconf-%s.tar.gz' % version_str] - -dependencies = [ - ('libreadline', '6.3'), - ('Tcl', '8.6.4'), -] - -parallel = 1 - -sanity_check_paths = { - 'files': [ - 'bin/sqlite3', - 'include/sqlite3ext.h', - 'include/sqlite3.h', - 'lib/libsqlite3.a', - 'lib/libsqlite3.%s' % - SHLIB_EXT], - 'dirs': ['lib/pkgconfig'], -} - -moduleclass = 'devel' diff --git a/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb b/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb deleted file mode 100644 index e6cc1e0d..00000000 --- a/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb +++ /dev/null @@ -1,47 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'SQLite' -version = '3.8.10.2' - -homepage = 'http://www.sqlite.org/' -description = 'SQLite: SQL Database Engine in a C Library' - -toolchain = {'name': 'intel', 'version': '2015a'} - -# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz -source_urls = ['http://www.sqlite.org/2015/'] -version_str = '%(version_major)s' + ''.join('%02d' % int(x) - for x in version.split('.')[1:]) -sources = ['sqlite-autoconf-%s.tar.gz' % version_str] - -dependencies = [ - ('libreadline', '6.3'), - ('Tcl', '8.6.4'), -] - -parallel = 1 - -sanity_check_paths = { - 'files': [ - 'bin/sqlite3', - 'include/sqlite3ext.h', - 'include/sqlite3.h', - 'lib/libsqlite3.a', - 'lib/libsqlite3.%s' % - SHLIB_EXT], - 'dirs': ['lib/pkgconfig'], -} - -moduleclass = 'devel' diff --git a/s/SQLite/SQLite-3.8.10.2-intel-2015b.eb b/s/SQLite/SQLite-3.8.10.2-intel-2015b.eb deleted file mode 100644 index f5eb53c6..00000000 --- a/s/SQLite/SQLite-3.8.10.2-intel-2015b.eb +++ /dev/null @@ -1,47 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'SQLite' -version = '3.8.10.2' - -homepage = 'http://www.sqlite.org/' -description = 'SQLite: SQL Database Engine in a C Library' - -toolchain = {'name': 'intel', 'version': '2015b'} - -# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz -source_urls = ['http://www.sqlite.org/2015/'] -version_str = '%(version_major)s' + ''.join('%02d' % int(x) - for x in version.split('.')[1:]) -sources = ['sqlite-autoconf-%s.tar.gz' % version_str] - -dependencies = [ - ('libreadline', '6.3'), - ('Tcl', '8.6.4'), -] - -parallel = 1 - -sanity_check_paths = { - 'files': [ - 'bin/sqlite3', - 'include/sqlite3ext.h', - 'include/sqlite3.h', - 'lib/libsqlite3.a', - 'lib/libsqlite3.%s' % - SHLIB_EXT], - 'dirs': ['lib/pkgconfig'], -} - -moduleclass = 'devel' diff --git a/s/SQLite/SQLite-3.8.8.1-foss-2015g.eb b/s/SQLite/SQLite-3.8.8.1-foss-2015g.eb deleted file mode 100644 index d46f77ba..00000000 --- a/s/SQLite/SQLite-3.8.8.1-foss-2015g.eb +++ /dev/null @@ -1,41 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'SQLite' -version = '3.8.8.1' - -homepage = 'http://www.sqlite.org/' -description = 'SQLite: SQL Database Engine in a C Library' - -toolchain = {'name': 'foss', 'version': '2015g'} - -# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz -source_urls = ['http://www.sqlite.org/2015/'] -version_str = '%(version_major)s' + ''.join('%02d' % int(x) - for x in version.split('.')[1:]) -sources = ['sqlite-autoconf-%s.tar.gz' % version_str] - -patches = ['enable_column_metadata.patch'] - -dependencies = [ - ('libreadline', '6.3'), - ('Tcl', '8.6.3'), -] - -sanity_check_paths = { - 'files': ['bin/sqlite3'], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/s/SQLite/SQLite-3.8.8.1-foss-2016a.eb b/s/SQLite/SQLite-3.8.8.1-foss-2016a.eb deleted file mode 100644 index e99cba83..00000000 --- a/s/SQLite/SQLite-3.8.8.1-foss-2016a.eb +++ /dev/null @@ -1,39 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'SQLite' -version = '3.8.8.1' - -homepage = 'http://www.sqlite.org/' -description = 'SQLite: SQL Database Engine in a C Library' - -toolchain = {'name': 'foss', 'version': '2016a'} - -# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz -source_urls = ['http://www.sqlite.org/2015/'] -version_str = '%(version_major)s' + ''.join('%02d' % int(x) - for x in version.split('.')[1:]) -sources = ['sqlite-autoconf-%s.tar.gz' % version_str] - -dependencies = [ - ('libreadline', '6.3'), - ('Tcl', '8.6.3'), -] - -sanity_check_paths = { - 'files': ['bin/sqlite3'], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/s/SQLite/SQLite-3.8.8.1-intel-2015b.eb b/s/SQLite/SQLite-3.8.8.1-intel-2015b.eb deleted file mode 100644 index ca44d003..00000000 --- a/s/SQLite/SQLite-3.8.8.1-intel-2015b.eb +++ /dev/null @@ -1,39 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'SQLite' -version = '3.8.8.1' - -homepage = 'http://www.sqlite.org/' -description = 'SQLite: SQL Database Engine in a C Library' - -toolchain = {'name': 'intel', 'version': '2015b'} - -# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz -source_urls = ['http://www.sqlite.org/2015/'] -version_str = '%(version_major)s' + ''.join('%02d' % int(x) - for x in version.split('.')[1:]) -sources = ['sqlite-autoconf-%s.tar.gz' % version_str] - -dependencies = [ - ('libreadline', '6.3'), - ('Tcl', '8.6.3'), -] - -sanity_check_paths = { - 'files': ['bin/sqlite3'], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/s/SQLite/SQLite-3.9.2-foss-2016a.eb b/s/SQLite/SQLite-3.9.2-foss-2016a.eb deleted file mode 100644 index 102c8d5f..00000000 --- a/s/SQLite/SQLite-3.9.2-foss-2016a.eb +++ /dev/null @@ -1,47 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'SQLite' -version = '3.9.2' - -homepage = 'http://www.sqlite.org/' -description = 'SQLite: SQL Database Engine in a C Library' - -toolchain = {'name': 'foss', 'version': '2016a'} - -# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz -source_urls = ['http://www.sqlite.org/2015/'] -version_str = '%%(version_major)s%s00' % ''.join('%02d' % int(x) - for x in version.split('.')[1:]) -sources = ['sqlite-autoconf-%s.tar.gz' % version_str] - -dependencies = [ - ('libreadline', '6.3'), - ('Tcl', '8.6.4'), -] - -parallel = 1 - -sanity_check_paths = { - 'files': [ - 'bin/sqlite3', - 'include/sqlite3ext.h', - 'include/sqlite3.h', - 'lib/libsqlite3.a', - 'lib/libsqlite3.%s' % - SHLIB_EXT], - 'dirs': ['lib/pkgconfig'], -} - -moduleclass = 'devel' diff --git a/s/SQLite/SQLite-3.9.2-intel-2015b.eb b/s/SQLite/SQLite-3.9.2-intel-2015b.eb deleted file mode 100644 index 59434d13..00000000 --- a/s/SQLite/SQLite-3.9.2-intel-2015b.eb +++ /dev/null @@ -1,47 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'SQLite' -version = '3.9.2' - -homepage = 'http://www.sqlite.org/' -description = 'SQLite: SQL Database Engine in a C Library' - -toolchain = {'name': 'intel', 'version': '2015b'} - -# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz -source_urls = ['http://www.sqlite.org/2015/'] -version_str = '%%(version_major)s%s00' % ''.join('%02d' % int(x) - for x in version.split('.')[1:]) -sources = ['sqlite-autoconf-%s.tar.gz' % version_str] - -dependencies = [ - ('libreadline', '6.3'), - ('Tcl', '8.6.4'), -] - -parallel = 1 - -sanity_check_paths = { - 'files': [ - 'bin/sqlite3', - 'include/sqlite3ext.h', - 'include/sqlite3.h', - 'lib/libsqlite3.a', - 'lib/libsqlite3.%s' % - SHLIB_EXT], - 'dirs': ['lib/pkgconfig'], -} - -moduleclass = 'devel' diff --git a/s/SQLite/SQLite-3.9.2-intel-2016.02-GCC-4.9.eb b/s/SQLite/SQLite-3.9.2-intel-2016.02-GCC-4.9.eb deleted file mode 100644 index d34739c6..00000000 --- a/s/SQLite/SQLite-3.9.2-intel-2016.02-GCC-4.9.eb +++ /dev/null @@ -1,47 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'SQLite' -version = '3.9.2' - -homepage = 'http://www.sqlite.org/' -description = 'SQLite: SQL Database Engine in a C Library' - -toolchain = {'name': 'intel', 'version': '2016.02-GCC-4.9'} - -# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz -source_urls = ['http://www.sqlite.org/2015/'] -version_str = '%%(version_major)s%s00' % ''.join('%02d' % int(x) - for x in version.split('.')[1:]) -sources = ['sqlite-autoconf-%s.tar.gz' % version_str] - -dependencies = [ - ('libreadline', '6.3'), - ('Tcl', '8.6.4'), -] - -parallel = 1 - -sanity_check_paths = { - 'files': [ - 'bin/sqlite3', - 'include/sqlite3ext.h', - 'include/sqlite3.h', - 'lib/libsqlite3.a', - 'lib/libsqlite3.%s' % - SHLIB_EXT], - 'dirs': ['lib/pkgconfig'], -} - -moduleclass = 'devel' diff --git a/s/SQLite/SQLite-3.9.2-intel-2016a.eb b/s/SQLite/SQLite-3.9.2-intel-2016a.eb deleted file mode 100644 index 721c3d46..00000000 --- a/s/SQLite/SQLite-3.9.2-intel-2016a.eb +++ /dev/null @@ -1,47 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'SQLite' -version = '3.9.2' - -homepage = 'http://www.sqlite.org/' -description = 'SQLite: SQL Database Engine in a C Library' - -toolchain = {'name': 'intel', 'version': '2016a'} - -# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz -source_urls = ['http://www.sqlite.org/2015/'] -version_str = '%%(version_major)s%s00' % ''.join('%02d' % int(x) - for x in version.split('.')[1:]) -sources = ['sqlite-autoconf-%s.tar.gz' % version_str] - -dependencies = [ - ('libreadline', '6.3'), - ('Tcl', '8.6.4'), -] - -parallel = 1 - -sanity_check_paths = { - 'files': [ - 'bin/sqlite3', - 'include/sqlite3ext.h', - 'include/sqlite3.h', - 'lib/libsqlite3.a', - 'lib/libsqlite3.%s' % - SHLIB_EXT], - 'dirs': ['lib/pkgconfig'], -} - -moduleclass = 'devel' diff --git a/s/STAR/STAR-2.5.1b-foss-2015b.eb b/s/STAR/STAR-2.5.1b-foss-2015b.eb deleted file mode 100644 index 57e819d5..00000000 --- a/s/STAR/STAR-2.5.1b-foss-2015b.eb +++ /dev/null @@ -1,41 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# sciCORE - University of Basel -# SIB Swiss Institute of Bioinformatics -# Author: Adam Huffman -# The Francis Crick Institute - -easyblock = 'MakeCp' - -name = 'STAR' -version = '2.5.1b' - -homepage = 'https://github.com/alexdobin/STAR' -description = """ STAR aligns RNA-seq reads to a reference genome using - uncompressed suffix arrays. """ - -toolchain = {'name': 'foss', 'version': '2015b'} -toolchainopts = {'openmp': True} - -source_urls = ['https://github.com/alexdobin/STAR/archive/'] -sources = ['%(version)s.tar.gz'] - -dependencies = [ - ('zlib', '1.2.8'), -] - -start_dir = 'source' - -buildopts = ' STAR && make STARlong' - -parallel = 1 - -files_to_copy = [(["source/STAR", "source/STARlong"], "bin"), "CHANGES.md", - "doc", "extras", "LICENSE", "README.md", "RELEASEnotes.md"] - -sanity_check_paths = { - 'files': ["bin/STAR", "bin/STARlong"], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/s/STAR/STAR-2.5.2a-foss-2016a.eb b/s/STAR/STAR-2.5.2a-foss-2016a.eb deleted file mode 100644 index c280468c..00000000 --- a/s/STAR/STAR-2.5.2a-foss-2016a.eb +++ /dev/null @@ -1,49 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# sciCORE - University of Basel -# SIB Swiss Institute of Bioinformatics -# Modified by: -# Adam Huffman -# The Francis Crick Institute - -easyblock = 'MakeCp' - -name = 'STAR' -version = '2.5.2a' - -homepage = 'https://github.com/alexdobin/STAR' -description = """ STAR aligns RNA-seq reads to a reference genome using - uncompressed suffix arrays. """ - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'openmp': True} - -source_urls = ['https://github.com/alexdobin/STAR/archive/'] -sources = ['%(version)s.tar.gz'] - -dependencies = [ - ('zlib', '1.2.8'), -] - -start_dir = 'source' - -buildopts = ' STAR && make STARlong' - -parallel = 1 - -files_to_copy = [ - (["source/STAR", "source/STARlong"], "bin"), - "CHANGES.md", - "doc", - "extras", - "LICENSE", - "README.md", - "RELEASEnotes.md" -] - -sanity_check_paths = { - 'files': ["bin/STAR", "bin/STARlong"], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/s/STREAM/STREAM-5.10-intel-2015a.eb b/s/STREAM/STREAM-5.10-intel-2015a.eb deleted file mode 100644 index 79841574..00000000 --- a/s/STREAM/STREAM-5.10-intel-2015a.eb +++ /dev/null @@ -1,37 +0,0 @@ -easyblock = 'CmdCp' - -name = 'STREAM' -version = '5.10' - -homepage = 'http://www.cs.virginia.edu/stream/' -description = """The STREAM benchmark is a simple synthetic benchmark program that measures sustainable - memory bandwidth (in MB/s) and the corresponding computation rate for simple vector kernels.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'openmp': True} - -source_urls = ['http://www.cs.virginia.edu/stream/FTP/Code/'] -sources = ['%(namelower)s.c'] -checksums = ['dd2941e3a28ff90a79b571273c10aacf'] - -skipsteps = ['source'] - -# 10 million array elements (1000 runs): requires ~224MB of memory -cmds_str = "$CC $CFLAGS %(source)s -mcmodel=large -DSTREAM_ARRAY_SIZE=10000000 -DNTIMES=1000 -o stream_1Kx10M; " -# 100 million array elements (1000 runs): requires ~2.2GiB of memory -cmds_str += "$CC $CFLAGS %(source)s -mcmodel=large -DSTREAM_ARRAY_SIZE=100000000 -DNTIMES=1000 -o stream_1Kx100M; " -# 1 billion array elements (1000 runs): requires ~22.4 GiB of memory -cmds_str += "$CC $CFLAGS %(source)s -mcmodel=large -DSTREAM_ARRAY_SIZE=1000000000 -DNTIMES=1000 -o stream_1Kx1B; " - -cmds_map = [('stream.c', cmds_str)] - -files_to_copy = [(['stream_1Kx10M', 'stream_1Kx100M', 'stream_1Kx1B'], 'bin')] - -sanity_check_paths = { - 'files': ['bin/stream_1Kx10M', 'bin/stream_1Kx100M', 'bin/stream_1Kx1B'], - 'dirs': [], -} - -tests = ['%(installdir)s/bin/stream_1Kx10M'] - -moduleclass = 'perf' diff --git a/s/SUMACLUST/SUMACLUST-1.0.20-foss-2016a.eb b/s/SUMACLUST/SUMACLUST-1.0.20-foss-2016a.eb deleted file mode 100644 index d3fad8b9..00000000 --- a/s/SUMACLUST/SUMACLUST-1.0.20-foss-2016a.eb +++ /dev/null @@ -1,28 +0,0 @@ -# Author: Pablo Escobar Lopez; Wiktor Jurkowski -# Swiss Institute of Bioinformatics (SIB), Biozentrum - University of Basel -# Babraham Institute, UK - -easyblock = 'MakeCp' - -name = 'SUMACLUST' -version = '1.0.20' - -homepage = "http://metabarcoding.org/sumatra" -description = """SUMATRA and SUMACLUST: fast and exact comparison and clustering of sequences.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [ - 'https://git.metabarcoding.org/obitools/sumaclust/uploads/69f757c42f2cd45212c587e87c75a00f/'] -sources = ['%(namelower)s_v%(version)s.tar.gz'] - -prebuildopts = 'make clean &&' - -files_to_copy = [(['sumaclust'], 'bin'), 'sumaclust_user_manual.pdf'] - -sanity_check_paths = { - 'files': ['bin/sumaclust', 'sumaclust_user_manual.pdf'], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/s/SUMATRA/SUMATRA-1.0.20-foss-2016a.eb b/s/SUMATRA/SUMATRA-1.0.20-foss-2016a.eb deleted file mode 100644 index edb50f29..00000000 --- a/s/SUMATRA/SUMATRA-1.0.20-foss-2016a.eb +++ /dev/null @@ -1,28 +0,0 @@ -# Author: Pablo Escobar Lopez; Wiktor Jurkowski -# Swiss Institute of Bioinformatics (SIB), Biozentrum - University of Basel -# Babraham Institute, UK - -easyblock = 'MakeCp' - -name = 'SUMATRA' -version = '1.0.20' - -homepage = "http://metabarcoding.org/sumatra" -description = """SUMATRA and SUMACLUST: fast and exact comparison and clustering of sequences.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [ - 'https://git.metabarcoding.org/obitools/sumatra/uploads/251020bbbd6c6595cb9fce6077e29952/'] -sources = ['%(namelower)s_v%(version)s.tar.gz'] - -prebuildopts = 'make clean &&' - -files_to_copy = [(['sumatra'], 'bin'), 'sumatra_user_manual.pdf'] - -sanity_check_paths = { - 'files': ['bin/sumatra', 'sumatra_user_manual.pdf'], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/s/SUMO/SUMO-0.25.0-foss-2015g.eb b/s/SUMO/SUMO-0.25.0-foss-2015g.eb deleted file mode 100644 index 8c595dc6..00000000 --- a/s/SUMO/SUMO-0.25.0-foss-2015g.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'SUMO' -version = '0.25.0' - -homepage = 'http://www.sumo.dlr.de/wiki/Main_Page' - -description = """Simulation of Urban MObility (SUMO) is an open source, highly portable, -microscopic and continuous road traffic simulation package designed to handle large road networks. -""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%(namelower)s-src-%(version)s.tar.gz'] - -osdependencies = ['xerces-c-devel'] - -builddependencies = [('FOX', '1.6.51'), - ('GDAL', '1.9.2'), - ('PROJ_4', '4.9.2'), - ] - -sanity_check_paths = { - 'files': ['bin/sumo', 'bin/sumo-gui'], - 'dirs': ['bin'], -} - -moduleclass = 'vis' diff --git a/s/SWASH/SWASH-3.14-intel-2015b-mpi.eb b/s/SWASH/SWASH-3.14-intel-2015b-mpi.eb deleted file mode 100644 index 59a30a98..00000000 --- a/s/SWASH/SWASH-3.14-intel-2015b-mpi.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'MakeCp' - -name = 'SWASH' -version = '3.14' -versionsuffix = '-mpi' - -homepage = 'http://swash.sourceforge.net/' -description = """SWASH is a general-purpose numerical tool for simulating unsteady, non-hydrostatic, free-surface, - rotational flow and transport phenomena in coastal waters as driven by waves, tides, buoyancy and wind forces.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'usempi': True} - -source_urls = ['http://swash.sourceforge.net/download/zip/'] -sources = [SOURCELOWER_TAR_GZ] - -prebuildopts = "unset FC && make config && " -buildopts = 'mpi' - -parallel = 1 - -files_to_copy = [(['swash.exe', 'swashrun', 'SWASHRUN.README'], 'bin')] - -sanity_check_paths = { - 'files': ['bin/swash.exe', 'bin/swashrun', 'bin/SWASHRUN.README'], - 'dirs': [], -} - -moduleclass = 'cae' diff --git a/s/SWASH/SWASH-3.14-intel-2015b-mt.eb b/s/SWASH/SWASH-3.14-intel-2015b-mt.eb deleted file mode 100644 index dddde53b..00000000 --- a/s/SWASH/SWASH-3.14-intel-2015b-mt.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'MakeCp' - -name = 'SWASH' -version = '3.14' -versionsuffix = '-mt' - -homepage = 'http://swash.sourceforge.net/' -description = """SWASH is a general-purpose numerical tool for simulating unsteady, non-hydrostatic, free-surface, - rotational flow and transport phenomena in coastal waters as driven by waves, tides, buoyancy and wind forces.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'openmp': True} - -source_urls = ['http://swash.sourceforge.net/download/zip/'] -sources = [SOURCELOWER_TAR_GZ] - -prebuildopts = "make config && " -buildopts = 'omp' - -parallel = 1 - -files_to_copy = [(['swash.exe', 'swashrun', 'SWASHRUN.README'], 'bin')] - -sanity_check_paths = { - 'files': ['bin/swash.exe', 'bin/swashrun', 'bin/SWASHRUN.README'], - 'dirs': [], -} - -moduleclass = 'cae' diff --git a/s/SWASH/SWASH-3.14-intel-2015b-serial.eb b/s/SWASH/SWASH-3.14-intel-2015b-serial.eb deleted file mode 100644 index c1888836..00000000 --- a/s/SWASH/SWASH-3.14-intel-2015b-serial.eb +++ /dev/null @@ -1,28 +0,0 @@ -easyblock = 'MakeCp' - -name = 'SWASH' -version = '3.14' -versionsuffix = '-serial' - -homepage = 'http://swash.sourceforge.net/' -description = """SWASH is a general-purpose numerical tool for simulating unsteady, non-hydrostatic, free-surface, - rotational flow and transport phenomena in coastal waters as driven by waves, tides, buoyancy and wind forces.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['http://swash.sourceforge.net/download/zip/'] -sources = [SOURCELOWER_TAR_GZ] - -prebuildopts = "make config && " -buildopts = 'ser' - -parallel = 1 - -files_to_copy = [(['swash.exe', 'swashrun', 'SWASHRUN.README'], 'bin')] - -sanity_check_paths = { - 'files': ['bin/swash.exe', 'bin/swashrun', 'bin/SWASHRUN.README'], - 'dirs': [], -} - -moduleclass = 'cae' diff --git a/s/SWIG/SWIG-2.0.12-intel-2015b-Python-2.7.9.eb b/s/SWIG/SWIG-2.0.12-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index b088a98b..00000000 --- a/s/SWIG/SWIG-2.0.12-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,24 +0,0 @@ -# Built with EasyBuild version 2.1.1 on 2015-08-24_15-07-49 -name = 'SWIG' -version = '2.0.12' - -homepage = 'http://www.swig.org/' -description = """SWIG is a software development tool that connects programs written in C and C++ with - a variety of high-level programming languages.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -python = "Python" -pythonversion = '2.7.9' -versionsuffix = '-%s-%s' % (python, pythonversion) - -dependencies = [ - (python, pythonversion), - ('PCRE', '8.36'), -] - -moduleclass = 'devel' diff --git a/s/SWIG/SWIG-3.0.7-intel-2015b-Python-2.7.9.eb b/s/SWIG/SWIG-3.0.7-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index 4b38a64a..00000000 --- a/s/SWIG/SWIG-3.0.7-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,23 +0,0 @@ -name = 'SWIG' -version = '3.0.7' - -homepage = 'http://www.swig.org/' -description = """SWIG is a software development tool that connects programs written in C and C++ with - a variety of high-level programming languages.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -source_urls = [SOURCEFORGE_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -python = "Python" -pythonversion = '2.7.9' -versionsuffix = '-%s-%s' % (python, pythonversion) - -dependencies = [ - (python, pythonversion), - ('PCRE', '8.36'), -] - -moduleclass = 'devel' diff --git a/s/Scalasca/Scalasca-2.3.1-foss-2016a.eb b/s/Scalasca/Scalasca-2.3.1-foss-2016a.eb deleted file mode 100644 index 35a374f2..00000000 --- a/s/Scalasca/Scalasca-2.3.1-foss-2016a.eb +++ /dev/null @@ -1,46 +0,0 @@ -## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild -# Copyright:: Copyright 2013-2016 Juelich Supercomputing Centre, Germany -# Authors:: Bernd Mohr -# Markus Geimer -# License:: 3-clause BSD -# -# This work is based on experiences from the UNITE project -# http://apps.fz-juelich.de/unite/ -## - -easyblock = 'EB_Score_minus_P' - -name = 'Scalasca' -version = '2.3.1' - -homepage = 'http://www.scalasca.org/' -description = """Scalasca is a software tool that supports the performance optimization of - parallel programs by measuring and analyzing their runtime behavior. The analysis identifies - potential performance bottlenecks -- in particular those concerning communication and - synchronization -- and offers guidance in exploring their causes.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [ - 'http://apps.fz-juelich.de/scalasca/releases/scalasca/%(version_major_minor)s/dist'] - -dependencies = [ - ('Score-P', '2.0.1'), - ('Cube', '4.3.4', '', True), - ('OTF2', '2.0', '', True), -] - -sanity_check_paths = { - 'files': [ - "bin/scalasca", - ("lib/libpearl.replay.a", - "lib64/libpearl.replay.a")], - 'dirs': [], -} - -# Ensure that local metric documentation is found by Cube GUI -modextrapaths = {'CUBE_DOCPATH': 'share/doc/scalasca/patterns'} - -moduleclass = 'perf' diff --git a/s/ScientificPython/ScientificPython-2.9.4-foss-2015g-Python-2.7.9.eb b/s/ScientificPython/ScientificPython-2.9.4-foss-2015g-Python-2.7.9.eb deleted file mode 100644 index fd3f1899..00000000 --- a/s/ScientificPython/ScientificPython-2.9.4-foss-2015g-Python-2.7.9.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'ScientificPython' -version = '2.9.4' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://sourcesup.cru.fr/projects/scientific-py/' -description = """ScientificPython is a collection of Python modules for scientific computing. - It contains support for geometry, mathematical functions, statistics, physical units, IO, visualization, - and parallelization.""" - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = ['https://sourcesup.cru.fr/frs/download.php/file/4570'] -sources = [SOURCE_TAR_GZ] - -dependencies = [ - ('Python', '2.7.9'), - # older version of numpy than the one included in Python module required - # cfr. https://bitbucket.org/khinsen/scientificpython/issue/13/numpy-19-has-dropped-support-for - #('numpy', '1.12.1', versionsuffix), -] - -options = {'modulename': 'Scientific'} - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%(pyshortver)s/site-packages/Scientific'], -} - -moduleclass = 'math' diff --git a/s/ScientificPython/ScientificPython-2.9.4-intel-2015b-Python-2.7.9.eb b/s/ScientificPython/ScientificPython-2.9.4-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index 7c611ff5..00000000 --- a/s/ScientificPython/ScientificPython-2.9.4-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,37 +0,0 @@ -easyblock = "PythonPackage" - -name = 'ScientificPython' -version = '2.9.4' - -homepage = 'https://sourcesup.cru.fr/projects/scientific-py/' -description = """ScientificPython is a collection of Python modules for scientific computing. - It contains support for geometry, mathematical functions, statistics, physical units, IO, visualization, - and parallelization.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['https://sourcesup.renater.fr/frs/download.php/4570'] -sources = [SOURCE_TAR_GZ] - -python = 'Python' -pythonversion = '2.7.9' -pythonshortversion = '.'.join(pythonversion.split('.')[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - -dependencies = [ - (python, pythonversion), - # older version of numpy than the one included in Python module required - # cfr. - # https://bitbucket.org/khinsen/scientificpython/issue/13/numpy-19-has-dropped-support-for - ('numpy', '1.8.2', versionsuffix), -] - -options = {'modulename': 'Scientific'} - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%s/site-packages/Scientific' % pythonshortversion], -} - -moduleclass = 'math' diff --git a/s/Score-P/Score-P-2.0.1-foss-2016a.eb b/s/Score-P/Score-P-2.0.1-foss-2016a.eb deleted file mode 100644 index 7e4a8cb7..00000000 --- a/s/Score-P/Score-P-2.0.1-foss-2016a.eb +++ /dev/null @@ -1,66 +0,0 @@ -## -# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild -# Copyright:: Copyright 2013-2016 Juelich Supercomputing Centre, Germany -# Authors:: Bernd Mohr -# Markus Geimer -# License:: 3-clause BSD -# -# This work is based on experiences from the UNITE project -# http://apps.fz-juelich.de/unite/ -## - -easyblock = 'EB_Score_minus_P' - -name = 'Score-P' -version = '2.0.1' - -homepage = 'http://www.score-p.org' -description = """The Score-P measurement infrastructure is a highly scalable and - easy-to-use tool suite for profiling, event tracing, and online analysis of HPC - applications.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -sources = ['scorep-%(version)s.tar.gz'] -source_urls = ['http://www.vi-hps.org/upload/packages/scorep/'] - -# Backported fix to prevent build-score/configure from picking up CFLAGS etc.; -# included in Score-P 2.0.2 and above -patches = [ - 'Score-P-2.0.1_fix_score_configure.patch', -] - -checksums = [ - '031a82fa26e2c9412e55d964f92fc9e9', # scorep-2.0.1.tar.gz - # Score-P-2.0.1_fix_score_configure.patch - '557b3a292591740271be7f336d5b7473', -] - -dependencies = [ - # ('libunwind', '1.1'), - ('Cube', '4.3.4', '', True), - ('OPARI2', '2.0', '', True), - ('OTF2', '2.0', '', True), - ('PAPI', '5.4.3', '', True), - ('PDT', '3.24', '', True), -] - -configopts = '--enable-shared' - -sanity_check_paths = { - 'files': [ - "bin/scorep", - "include/scorep/SCOREP_User.h", - ("lib/libscorep_adapter_mpi_event.a", - "lib64/libscorep_adapter_mpi_event.a"), - ("lib/libscorep_adapter_mpi_event.%s" % - SHLIB_EXT, - "lib64/libscorep_adapter_mpi_event.%s" % - SHLIB_EXT)], - 'dirs': [], -} - -# Ensure that local metric documentation is found by Cube GUI -modextrapaths = {'CUBE_DOCPATH': 'share/doc/scorep/profile'} - -moduleclass = 'perf' diff --git a/s/Serf/Serf-1.3.8-foss-2015a.eb b/s/Serf/Serf-1.3.8-foss-2015a.eb deleted file mode 100644 index 987ce669..00000000 --- a/s/Serf/Serf-1.3.8-foss-2015a.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'SCons' -name = 'Serf' -version = '1.3.8' - -homepage = 'http://serf.apache.org/' -description = """The serf library is a high performance C-based HTTP client library - built upon the Apache Portable Runtime (APR) library""" - -toolchain = {'name': 'foss', 'version': '2015a'} - -source_urls = ['https://archive.apache.org/dist/%(namelower)s'] -sources = [SOURCELOWER_TAR_BZ2] - -patches = [ - ('%(name)s-%(version)s_remve_c99_comment.patch'), - ('%(name)s-%(version)s_SCons_ld_lib.patch'), -] - -builddependencies = [('SCons', '2.3.6', '-Python-2.7.9')] - -dependencies = [ - ('APR', '1.5.2'), - ('APR-util', '1.5.4'), - # ('OpenSSL', '1.0.1p'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] - -buildopts = "APR=$EBROOTAPR/bin/apr-1-config APU=$EBROOTAPRMINUTIL/bin/apu-1-config" - -sanity_check_paths = { - 'files': ['include/serf-1/serf.h'] + - ['lib/libserf-1.%s' % x for x in ['a', 'so']], - 'dirs': [], -} - -moduleclass = 'tools' diff --git a/s/SortMeRNA/SortMeRNA-2.1-foss-2016a.eb b/s/SortMeRNA/SortMeRNA-2.1-foss-2016a.eb deleted file mode 100644 index 55fd72ec..00000000 --- a/s/SortMeRNA/SortMeRNA-2.1-foss-2016a.eb +++ /dev/null @@ -1,37 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Cedric Laczny , Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html -## -easyblock = 'ConfigureMake' - -name = 'SortMeRNA' -version = '2.1' - -homepage = 'http://bioinfo.lifl.fr/RNA/sortmerna/' -description = """ -SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} -toolchainopts = {'optarch': True, 'pic': True} - -source_urls = ['https://github.com/biocore/sortmerna/archive/'] -sources = ['%(version)s.tar.gz'] - -# Patch for double includes of header files in Makefile.in -patches = ['SortMeRNA-%(version)s_Makefile.in.patch'] - -sanity_check_paths = { - 'files': ['bin/indexdb_rna', 'bin/sortmerna'], - 'dirs': ['include', 'sortmerna'] - -} - -moduleclass = 'bio' diff --git a/s/SpatiaLite/SpatiaLite-4.3.0a-foss-2015g.eb b/s/SpatiaLite/SpatiaLite-4.3.0a-foss-2015g.eb deleted file mode 100644 index 48e57100..00000000 --- a/s/SpatiaLite/SpatiaLite-4.3.0a-foss-2015g.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'ConfigureMake' -name = 'SpatiaLite' -version = '4.3.0a' - -homepage = 'https://www.gaia-gis.it/fossil/libspatialite/index' -description = """SpatiaLite is an open source library intended to extend the SQLite core to support -fully fledged Spatial SQL capabilities. -""" -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = ['http://www.gaia-gis.it/gaia-sins/libspatialite-4.3.0a.tar.gz'] -sources = ['lib%(namelower)s-%(version)s.tar.gz'] - -builddependencies = [('SQLite', '3.8.8.1')] - -dependencies = [('Qt', '4.8.6'), - ('PROJ_4', '4.9.2'), - ('GEOS', '3.5.0'), - ('GDAL', '2.1.0'), - ('Qwt', '6.1.2'), - ('expat', '2.1.0') - ] - -preconfigopts = 'export LIBS="-lm -lpthread -L/apps/all/SQLite/3.8.8.1-foss-2015g/lib" && ' - -configopts = '--disable-freexl' - -sanity_check_paths = { - 'files': ['include/spatialite.h', 'lib/libspatialite.so'], - 'dirs': ['lib', 'include'] -} - -moduleclass = 'lib' diff --git a/s/Sphinx/Sphinx-1.4.8-foss-2016a-Python-2.7.11.eb b/s/Sphinx/Sphinx-1.4.8-foss-2016a-Python-2.7.11.eb deleted file mode 100644 index dc27601c..00000000 --- a/s/Sphinx/Sphinx-1.4.8-foss-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,82 +0,0 @@ -easyblock = 'Bundle' - -name = 'Sphinx' -version = '1.4.8' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://sphinx.pocoo.org/' -description = """Sphinx is a tool that makes it easy to create intelligent and beautiful documentation. - It was originally created for the new Python documentation, and it has excellent facilities for the - documentation of Python projects, but C/C++ is already supported as well, and it is planned to add - special support for other languages as well.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -# this is a bundle of Python packages -exts_defaultclass = 'PythonPackage' - -dependencies = [ - ('Python', '2.7.11'), - ('Pygments', '2.1.3', '-Python-%(pyver)s'), - ('requests', '2.10.0', versionsuffix), -] - -exts_list = [ - ('imagesize', '0.7.1', { - 'source_urls': ['https://pypi.python.org/packages/source/i/imagesize/'], - }), - ('MarkupSafe', '0.23', { - 'source_urls': ['https://pypi.io/packages/source/M/MarkupSafe/'], - 'modulename': 'markupsafe', - }), - ('Docutils', '0.12', { - 'source_tmpl': 'docutils-%(version)s.tar.gz', - 'source_urls': [('http://sourceforge.net/projects/docutils/files/docutils/%(version)s/', 'download')], - }), - ('Jinja2', '2.8', { - 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], - }), - ('snowballstemmer', '1.2.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/snowballstemmer/'], - }), - ('Babel', '2.3.4', { - 'source_urls': ['https://pypi.python.org/packages/source/B/Babel/'], - }), - ('alabaster', '0.7.8', { - 'source_urls': ['https://pypi.python.org/packages/source/a/alabaster/'], - }), - (name, version, { - 'source_urls': ['https://pypi.python.org/packages/source/S/Sphinx/'], - 'patches': ['Sphinx-%s-pdflatex_failing_tests.patch' % version], - }), - # sphinx_rtd_theme depends on Sphinx, and should be there to make the - # tests work - ('sphinx_rtd_theme', '0.1.10a0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/sphinx_rtd_theme/'], - }), -] - -# Sphinx unit tests *after* installing extensions -postinstallcmds = [' && '.join([ - "cd %(builddir)s/%(name)s/%(name)s-%(version)s/", - "PYTHONPATH=%(installdir)s/lib/python%(pyshortver)s/site-packages/:$PYTHONPATH make test", -])] - -# specify that Bundle easyblock should run a full sanity check, rather -# than just trying to load the module -full_sanity_check = True - -sanity_check_paths = { - 'files': [ - 'bin/sphinx-%s' % - x for x in [ - 'apidoc', - 'autogen', - 'build', - 'quickstart']], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} - -moduleclass = 'vis' diff --git a/s/Sphinx/Sphinx-1.4.8-foss-2016a-Python-3.5.1.eb b/s/Sphinx/Sphinx-1.4.8-foss-2016a-Python-3.5.1.eb deleted file mode 100644 index 07d49851..00000000 --- a/s/Sphinx/Sphinx-1.4.8-foss-2016a-Python-3.5.1.eb +++ /dev/null @@ -1,82 +0,0 @@ -easyblock = 'Bundle' - -name = 'Sphinx' -version = '1.4.8' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://sphinx.pocoo.org/' -description = """Sphinx is a tool that makes it easy to create intelligent and beautiful documentation. - It was originally created for the new Python documentation, and it has excellent facilities for the - documentation of Python projects, but C/C++ is already supported as well, and it is planned to add - special support for other languages as well.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -# this is a bundle of Python packages -exts_defaultclass = 'PythonPackage' - -dependencies = [ - ('Python', '3.5.1'), - ('Pygments', '2.1.3', '-Python-%(pyver)s'), - ('requests', '2.10.0', versionsuffix), -] - -exts_list = [ - ('imagesize', '0.7.1', { - 'source_urls': ['https://pypi.python.org/packages/source/i/imagesize/'], - }), - ('MarkupSafe', '0.23', { - 'source_urls': ['https://pypi.io/packages/source/M/MarkupSafe/'], - 'modulename': 'markupsafe', - }), - ('Docutils', '0.12', { - 'source_tmpl': 'docutils-%(version)s.tar.gz', - 'source_urls': [('http://sourceforge.net/projects/docutils/files/docutils/%(version)s/', 'download')], - }), - ('Jinja2', '2.8', { - 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], - }), - ('snowballstemmer', '1.2.1', { - 'source_urls': ['https://pypi.python.org/packages/source/s/snowballstemmer/'], - }), - ('Babel', '2.3.4', { - 'source_urls': ['https://pypi.python.org/packages/source/B/Babel/'], - }), - ('alabaster', '0.7.8', { - 'source_urls': ['https://pypi.python.org/packages/source/a/alabaster/'], - }), - (name, version, { - 'source_urls': ['https://pypi.python.org/packages/source/S/Sphinx/'], - 'patches': ['Sphinx-%s-pdflatex_failing_tests.patch' % version], - }), - # sphinx_rtd_theme depends on Sphinx, and should be there to make the - # tests work - ('sphinx_rtd_theme', '0.1.10a0', { - 'source_urls': ['https://pypi.python.org/packages/source/s/sphinx_rtd_theme/'], - }), -] - -# Sphinx unit tests *after* installing extensions -postinstallcmds = [' && '.join([ - "cd %(builddir)s/%(name)s/%(name)s-%(version)s/", - "PYTHONPATH=%(installdir)s/lib/python%(pyshortver)s/site-packages/:$PYTHONPATH make test", -])] - -# specify that Bundle easyblock should run a full sanity check, rather -# than just trying to load the module -full_sanity_check = True - -sanity_check_paths = { - 'files': [ - 'bin/sphinx-%s' % - x for x in [ - 'apidoc', - 'autogen', - 'build', - 'quickstart']], - 'dirs': ['lib/python%(pyshortver)s/site-packages'], -} - -modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} - -moduleclass = 'vis' diff --git a/s/Stacks/Stacks-1.40-foss-2016a.eb b/s/Stacks/Stacks-1.40-foss-2016a.eb deleted file mode 100644 index 58f38504..00000000 --- a/s/Stacks/Stacks-1.40-foss-2016a.eb +++ /dev/null @@ -1,52 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Stacks' -version = '1.40' - -homepage = 'http://creskolab.uoregon.edu/stacks/' -description = """Stacks is a software pipeline for building loci from short-read sequences, such as those generated on - the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose - of building genetic maps and conducting population genomics and phylogeography. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://catchenlab.life.illinois.edu/stacks/source/'] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [ - ('zlib', '1.2.8'), - ('SAMtools', '1.3.1'), - ('sparsehash', '2.0.2'), -] - -sanity_check_paths = { - 'files': [ - 'bin/%s' % - binfile for binfile in [ - 'clone_filter', - 'denovo_map.pl', - 'exec_velvet.pl', - 'genotypes', - 'index_radtags.pl', - 'load_radtags.pl', - 'populations', - 'process_shortreads', - 'ref_map.pl', - 'sstacks', - 'ustacks', - 'cstacks', - 'estacks', - 'export_sql.pl', - 'hstacks', - 'kmer_filter', - 'load_sequences.pl', - 'process_radtags', - 'pstacks', - 'sort_read_pairs.pl', - 'stacks_export_notify.pl', - ]], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/s/Stacks/Stacks-1.42-foss-2016a.eb b/s/Stacks/Stacks-1.42-foss-2016a.eb deleted file mode 100644 index 0db39295..00000000 --- a/s/Stacks/Stacks-1.42-foss-2016a.eb +++ /dev/null @@ -1,52 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Stacks' -version = '1.42' - -homepage = 'http://creskolab.uoregon.edu/stacks/' -description = """Stacks is a software pipeline for building loci from short-read sequences, such as those generated on - the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose - of building genetic maps and conducting population genomics and phylogeography. -""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://catchenlab.life.illinois.edu/stacks/source/'] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [ - ('zlib', '1.2.8'), - ('SAMtools', '1.3.1'), - ('sparsehash', '2.0.2'), -] - -sanity_check_paths = { - 'files': [ - 'bin/%s' % - binfile for binfile in [ - 'clone_filter', - 'denovo_map.pl', - 'exec_velvet.pl', - 'genotypes', - 'index_radtags.pl', - 'load_radtags.pl', - 'populations', - 'process_shortreads', - 'ref_map.pl', - 'sstacks', - 'ustacks', - 'cstacks', - 'estacks', - 'export_sql.pl', - 'hstacks', - 'kmer_filter', - 'load_sequences.pl', - 'process_radtags', - 'pstacks', - 'sort_read_pairs.pl', - 'stacks_export_notify.pl', - ]], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/s/StringTie/StringTie-1.3.0-intel-2016b.eb b/s/StringTie/StringTie-1.3.0-intel-2016b.eb deleted file mode 100644 index 35c414cf..00000000 --- a/s/StringTie/StringTie-1.3.0-intel-2016b.eb +++ /dev/null @@ -1,26 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# sciCORE - University of Basel -# SIB Swiss Institute of Bioinformatics - -easyblock = 'MakeCp' - -name = 'StringTie' -version = '1.3.0' - -homepage = 'http://ccb.jhu.edu/software/stringtie/' -description = """StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.""" - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = ['http://ccb.jhu.edu/software/stringtie/dl/'] -sources = [SOURCELOWER_TAR_GZ] - -files_to_copy = [(['stringtie'], 'bin'), 'README', 'LICENSE'] - -sanity_check_paths = { - 'files': ['bin/stringtie'], - 'dirs': [], -} - -moduleclass = 'bio' diff --git a/s/Subversion/Subversion-1.8.14-foss-2015a.eb b/s/Subversion/Subversion-1.8.14-foss-2015a.eb deleted file mode 100644 index be6f1332..00000000 --- a/s/Subversion/Subversion-1.8.14-foss-2015a.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Subversion' -version = '1.8.14' - -homepage = 'http://subversion.apache.org/' -description = " Subversion is an open source version control system." - -toolchain = {'name': 'foss', 'version': '2015a'} - -source_urls = [ - 'http://apache.belnet.be/%(namelower)s', - 'http://www.eu.apache.org/dist/%(namelower)s', - 'http://www.us.apache.org/dist/%(namelower)s', -] -sources = [SOURCELOWER_TAR_BZ2] - -dependencies = [ - ('APR', '1.5.2'), - ('APR-util', '1.5.4'), - ('SQLite', '3.8.8.1'), - ('zlib', '1.2.8'), - ('Serf', '1.3.8'), -] - -configopts = "--with-apr=$EBROOTAPR/bin/apr-1-config --with-apr-util=$EBROOTAPRMINUTIL/bin/apu-1-config " -configopts += "--with-zlib=$EBROOTZLIB --with-serf=$EBROOTSERF" - -sanity_check_paths = { - 'files': ["bin/svn", "bin/svnversion"], - 'dirs': [], -} - -moduleclass = 'tools' diff --git a/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015b-ParMETIS-4.0.3.eb b/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015b-ParMETIS-4.0.3.eb deleted file mode 100644 index 8d48751e..00000000 --- a/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015b-ParMETIS-4.0.3.eb +++ /dev/null @@ -1,20 +0,0 @@ -name = 'SuiteSparse' -version = '4.4.3' - -homepage = 'http://www.cise.ufl.edu/research/sparse/SuiteSparse/' -description = """SuiteSparse is a collection of libraries manipulate sparse matrices.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'opt': True, 'unroll': True, 'pic': True, 'static': True} - -source_urls = ['http://faculty.cse.tamu.edu/davis/SuiteSparse/'] -sources = [SOURCE_TAR_GZ] - -parmetis = 'ParMETIS' -parmetis_ver = '4.0.3' -versionsuffix = '-%s-%s' % (parmetis, parmetis_ver) -dependencies = [(parmetis, parmetis_ver)] - -maxparallel = 1 - -moduleclass = 'numlib' diff --git a/s/SuiteSparse/SuiteSparse-4.4.6-intel-2015b-ParMETIS-4.0.3.eb b/s/SuiteSparse/SuiteSparse-4.4.6-intel-2015b-ParMETIS-4.0.3.eb deleted file mode 100644 index f7e3ca89..00000000 --- a/s/SuiteSparse/SuiteSparse-4.4.6-intel-2015b-ParMETIS-4.0.3.eb +++ /dev/null @@ -1,43 +0,0 @@ -name = 'SuiteSparse' -version = '4.4.6' - -homepage = 'http://faculty.cse.tamu.edu/davis/suitesparse.html' -description = """SuiteSparse is a collection of libraries manipulate sparse matrices.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'opt': True, 'unroll': True, 'pic': True} - -source_urls = ['http://faculty.cse.tamu.edu/davis/SuiteSparse/'] -sources = [SOURCE_TAR_GZ] - -parmetis = 'ParMETIS' -parmetis_ver = '4.0.3' -versionsuffix = '-%s-%s' % (parmetis, parmetis_ver) -dependencies = [(parmetis, parmetis_ver)] - -maxparallel = 1 - -# IT4I -modextrapaths = { - 'LD_LIBRARY_PATH': ['SuiteSparse_config'], - 'CPATH': [ - 'UMFPACK/include', - 'AMD/include', - 'SuiteSparse_config'], - 'LIBRARY_PATH': [ - 'AMD/lib', - 'BTF/lib', - 'CAMD/lib', - 'CCOLAMD/lib', - 'CHOLAMD/lib', - 'CHOLMOD/lib', - 'COLAMD/lib/', - 'CSparse/lib', - 'CXSparse/lib', - 'KLU/lib', - 'LDL/lib', - 'RBio/lib', - 'UMFPACK/lib', - 'SuiteSparse_config']} - -moduleclass = 'numlib' diff --git a/s/scipy/scipy-0.16.0-intel-2016b-Python-2.7.12.eb b/s/scipy/scipy-0.16.0-intel-2016b-Python-2.7.12.eb deleted file mode 100644 index 8d37daa1..00000000 --- a/s/scipy/scipy-0.16.0-intel-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,34 +0,0 @@ -name = 'scipy' -version = '0.16.0' -versionsuffix = '-Python-2.7.12' - -homepage = 'http://www.scipy.org' -description = """SciPy is a collection of mathematical algorithms and convenience - functions built on the Numpy extension for Python.""" - -toolchain = {'name': 'intel', 'version': '2016b'} -toolchainopts = {'pic': True} - -source_urls = [ - ('http://sourceforge.net/projects/scipy/files/scipy/%(version)s', 'download')] -sources = [SOURCE_TAR_GZ] - -patches = ['scipy-%(version)s_fix-failing-tests-mkl.patch'] - -dependencies = [ - ('numpy', '1.9.2', versionsuffix), -] - -# recompile patch Cython source file -prebuildopts = "cython scipy/linalg/_decomp_update.pyx && " - -# need to use pip rather than regular 'setup.py install,' -# to ensure that this scipy wins over the one in the Python installation; -# using easy_install does not work... -use_pip = True - -# install as zipped egg to get a .pth file in lib/python*/site-packages; -# this enables shadowing of the scipy that is part of the Python installation -zipped_egg = True - -moduleclass = 'math' diff --git a/s/spatialindex/spatialindex-1.8.5-foss-2015g.eb b/s/spatialindex/spatialindex-1.8.5-foss-2015g.eb deleted file mode 100644 index bb90f8f3..00000000 --- a/s/spatialindex/spatialindex-1.8.5-foss-2015g.eb +++ /dev/null @@ -1,23 +0,0 @@ -easyblock = 'ConfigureMake' -name = 'spatialindex' -version = '1.8.5' - -homepage = 'https://libspatialindex.github.io/index.html' -description = """The purpose of this library is to provide: - * An extensible framework that will support robust spatial indexing methods. - * Support for sophisticated spatial queries. Range, point location, nearest - neighbor and k-nearest neighbor as well as parametric queries (defined by spatial - constraints) should be easy to deploy and run. - * Easy to use interfaces for inserting, deleting and updating information. -""" -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = ['http://download.osgeo.org/libspatialindex/'] -sources = ['%(name)s-src-%(version)s.tar.gz'] - -sanity_check_paths = { - 'files': ['lib/libspatialindex.so'], - 'dirs': ['lib'] -} - -moduleclass = 'lib' diff --git a/s/sympy/sympy-0.7.6-intel-2015b-Python-2.7.9.eb b/s/sympy/sympy-0.7.6-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index cdac6ddb..00000000 --- a/s/sympy/sympy-0.7.6-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,35 +0,0 @@ -easyblock = "PythonPackage" - -name = 'sympy' -version = '0.7.6' - -homepage = 'http://sympy.org/' -description = """SymPy is a Python library for symbolic mathematics. It aims to - become a full-featured computer algebra system (CAS) while keeping the code as - simple as possible in order to be comprehensible and easily extensible. SymPy - is written entirely in Python and does not require any external libraries.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = [ - 'https://github.com/sympy/sympy/releases/download/sympy-%(version)s/'] -sources = [SOURCE_TAR_GZ] - -python = "Python" -pythonversion = '2.7.9' -pythonshortversion = '.'.join(pythonversion.split('.')[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - -dependencies = [(python, pythonversion)] - -runtest = 'python setup.py test' - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%s/site-packages/sympy' % pythonshortversion], -} - -skipsteps = ['test'] - -moduleclass = 'math' diff --git a/s/sympy/sympy-1.0-foss-2016a-Python-2.7.11.eb b/s/sympy/sympy-1.0-foss-2016a-Python-2.7.11.eb deleted file mode 100644 index fff00151..00000000 --- a/s/sympy/sympy-1.0-foss-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'sympy' -version = '1.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://sympy.org/' -description = """SymPy is a Python library for symbolic mathematics. It aims to - become a full-featured computer algebra system (CAS) while keeping the code as - simple as possible in order to be comprehensible and easily extensible. SymPy - is written entirely in Python and does not require any external libraries.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [PYPI_SOURCE] -sources = [SOURCE_TAR_GZ] - -# Patch to fix tests -patches = ['sympy-1.0_tests-unicode.patch'] - -dependencies = [ - ('Python', '2.7.11'), - ('mpmath', '0.19', '-Python-%(pyver)s'), -] - -runtest = 'python setup.py test' - -sanity_check_paths = {'files': [], 'dirs': [ - 'lib/python%(pyshortver)s/site-packages/%(name)s-%(version)s-py%(pyshortver)s.egg/%(name)s'], } - -moduleclass = 'math' diff --git a/s/sympy/sympy-1.0-intel-2016a-Python-2.7.11.eb b/s/sympy/sympy-1.0-intel-2016a-Python-2.7.11.eb deleted file mode 100644 index 4eafddad..00000000 --- a/s/sympy/sympy-1.0-intel-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = 'PythonPackage' - -name = 'sympy' -version = '1.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://sympy.org/' -description = """SymPy is a Python library for symbolic mathematics. It aims to - become a full-featured computer algebra system (CAS) while keeping the code as - simple as possible in order to be comprehensible and easily extensible. SymPy - is written entirely in Python and does not require any external libraries.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = [PYPI_SOURCE] -sources = [SOURCE_TAR_GZ] - -# Patch to fix tests -patches = ['sympy-1.0_tests-unicode.patch'] - -dependencies = [ - ('Python', '2.7.11'), - ('mpmath', '0.19', '-Python-%(pyver)s'), -] - -runtest = 'python setup.py test' - -sanity_check_paths = {'files': [], 'dirs': [ - 'lib/python%(pyshortver)s/site-packages/%(name)s-%(version)s-py%(pyshortver)s.egg/%(name)s'], } - -moduleclass = 'math' diff --git a/t/Trinity/Trinity-2.1.1-intel-2015b.eb b/t/Trinity/Trinity-2.1.1-intel-2015b.eb deleted file mode 100644 index 5f116c4b..00000000 --- a/t/Trinity/Trinity-2.1.1-intel-2015b.eb +++ /dev/null @@ -1,37 +0,0 @@ -name = 'Trinity' -version = '2.1.1' - -homepage = 'http://trinityrnaseq.github.io' -description = """Trinity represents a novel method for the efficient and robust de novo reconstruction - of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, - Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads.""" -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'optarch': True} - -source_urls = ['https://github.com/trinityrnaseq/trinityrnaseq/archive/'] - -java = 'Java' -javaver = '1.8.0_66' - -sources = ['v%(version)s.tar.gz'] - -patches = [ - 'chrysalis_commandline_noconsts_2012-10-05.patch', - 'Trinity-%(version)s_jellyfish-Makefile.patch', -] - -builddependencies = [ - ('Autotools', '20150215', '', ('GNU', '4.9.3-2.25')), -] - -dependencies = [ - (java, javaver, '', True), - ('ant', '1.9.6', '-%s-%s' % (java, javaver), True), - ('Bowtie', '1.1.2'), - ('Bowtie2', '2.2.6'), - ('ncurses', '5.9',), - ('zlib', '1.2.8'), - ('Perl', '5.20.3'), -] - -moduleclass = 'bio' diff --git a/t/Trinity/Trinity-2.2.0-foss-2016a.eb b/t/Trinity/Trinity-2.2.0-foss-2016a.eb deleted file mode 100644 index 58018d93..00000000 --- a/t/Trinity/Trinity-2.2.0-foss-2016a.eb +++ /dev/null @@ -1,38 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# Swiss Institute of Bioinformatics -# Biozentrum - University of Basel - -name = 'Trinity' -version = '2.2.0' - -homepage = 'http://trinityrnaseq.github.io/' -description = """Trinity represents a novel method for the efficient and robust de novo reconstruction - of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, - Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://github.com/trinityrnaseq/trinityrnaseq/archive/'] -sources = ['v%(version)s.tar.gz'] - -patches = [ - 'chrysalis_commandline_noconsts_2012-10-05.patch', - 'Trinity-2.2.0_jellyfish-Makefile.patch', -] - -builddependencies = [ - ('Autotools', '20150215'), -] - -dependencies = [ - ('Java', '1.8.0_92', '', True), - ('ant', '1.9.7', '-Java-%(javaver)s', True), - ('Bowtie', '1.1.2'), - ('Bowtie2', '2.2.8'), - ('ncurses', '6.0',), - ('zlib', '1.2.8'), - ('Perl', '5.22.1'), -] - -moduleclass = 'bio' diff --git a/t/tcsh/tcsh-6.18.01-intel-2015b.eb b/t/tcsh/tcsh-6.18.01-intel-2015b.eb deleted file mode 100644 index b2f64939..00000000 --- a/t/tcsh/tcsh-6.18.01-intel-2015b.eb +++ /dev/null @@ -1,38 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit -# Authors:: Valentin Plugaru -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html -## -easyblock = 'ConfigureMake' - -name = 'tcsh' -version = '6.18.01' - -homepage = 'http://www.tcsh.org' -description = """Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). - It is a command language interpreter usable both as an interactive login shell and a shell script command - processor. It includes a command-line editor, programmable word completion, spelling correction, a history - mechanism, job control and a C-like syntax.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [ - 'ftp://ftp.astron.com/pub/%(namelower)s', - 'ftp://ftp.astron.com/pub/%(namelower)s/old', -] - -dependencies = [('ncurses', '5.9')] - -sanity_check_paths = { - 'files': ["bin/tcsh"], - 'dirs': [] -} - -moduleclass = 'tools' diff --git a/u/USPEX/USPEX-9.4.4-intel-2016b-Python-2.7.12.eb b/u/USPEX/USPEX-9.4.4-intel-2016b-Python-2.7.12.eb deleted file mode 100644 index 492b149a..00000000 --- a/u/USPEX/USPEX-9.4.4-intel-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,49 +0,0 @@ -easyblock = 'PackedBinary' - -name = 'USPEX' -version = '9.4.4' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'http://uspex-team.org/uspex/overview' -description = """USPEX (Universal Structure Predictor: Evolutionary Xtallography... - and in Russian "uspekh" means "success" - owing to the high success rate and many - useful results produced by this method) is a method developed by the Oganov - laboratory since 2004. The problem of crystal structure prediction is very old and - does, in fact, constitute the central problem of theoretical crystal chemistry. - -USPEX can also be used for finding low-energy metastable phases, as well as stable - structures of nanoparticles, surface reconstructions, molecular packings in organic - crystals, and for searching for materials with desired physical (mechanical, - electronic) properties. The USPEX code is based on an efficient evolutionary - algorithm developed by A.R. Oganov's group, but also has options for using - alternative methods (random sampling, metadynamics, corrected particle swarm - optimization algorithms). USPEX is interfaced with many ab initio codes, such as - VASP, SIESTA, GULP, Quantum Espresso, CP2K, CASTEP, LAMMPS, and so on. """ - -toolchain = {'name': 'intel', 'version': '2016b'} - -sources = ['%(name)s-%(version)s.tar.gz'] -# You have to register before download -#source_urls = ['http://uspex-team.org/uspex/downloads'] - -dependencies = [ - ('Python', '2.7.12'), - ('Octave', '4.0.3'), -] - -postinstallcmds = [ - 'echo $EBROOTOCTAVE/bin/octave > %(installdir)s/CODEPATH', - 'chmod +x %(installdir)s/src/FunctionFolder/Tool/*', - 'rm %(installdir)s/INSTALL', - 'rm %(installdir)s/install.sh', - 'rm %(installdir)s/job', -] - -sanity_check_paths = { - 'files': ['USPEX'], - 'dirs': ['doc', 'examples', 'lib', 'src', 'tests'] -} - -modextravars = {'USPEXPATH': '%(installdir)s/src'} - -moduleclass = 'phys' diff --git a/v/VASP/VASP-5.4.1-24Jun15-intel-2015b.eb b/v/VASP/VASP-5.4.1-24Jun15-intel-2015b.eb deleted file mode 100644 index 4bf1ee62..00000000 --- a/v/VASP/VASP-5.4.1-24Jun15-intel-2015b.eb +++ /dev/null @@ -1,47 +0,0 @@ -easyblock = 'MakeCp' - -name = 'VASP' -version = '5.4.1' -versionsuffix = '-24Jun15' - -homepage = 'http://www.vasp.at' -description = """The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale -materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, -from first principles. - -To use VASP, You need academic licenses from University of Wiena. Follow the instructions https://www.vasp.at/index.php/faqs. - -Then send us please a list of authorized users and their ID for which you need this access. Please use only http://support.it4i.cz/rt. We are responsible to verify your licenses. After succesfull verification You will be granted to use VASP in our enviroment.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True, 'usempi': True} - -# Vasp is proprietary software, see http://www.vasp.at/index.php/faqs on -# how to get access to the code -sources = ['vasp.5.4.1.tar.gz'] - -dependencies = [ - ('FFTW', '3.3.4'), - ('zlib', '1.2.8'), -] - -prebuildopts = 'cp arch/makefile.include.linux_intel ./makefile.include && ' - -# path to libfftw3xf_intel.a is hardcoded in makefile.include -prebuildopts += 'sed -i "s|\$(MKLROOT)/interfaces/fftw3xf|\$(FFTW_LIB_DIR)|" makefile.include && ' - -# VASP uses LIBS as a list of folders -prebuildopts += 'unset LIBS && ' - -buildopts = 'all BLACS="$LIBBLACS" ' - -parallel = 1 - -files_to_copy = [(['bin/vasp_std', 'bin/vasp_gam', 'bin/vasp_ncl'], 'bin')] - -sanity_check_paths = { - 'files': ['bin/vasp_std', 'bin/vasp_gam', 'bin/vasp_ncl'], - 'dirs': [] -} - -moduleclass = 'phys' diff --git a/v/VASP/VASP-5.4.4-intel-2015b-mkl=sequential.eb b/v/VASP/VASP-5.4.4-intel-2015b-mkl=sequential.eb deleted file mode 100644 index 09969eef..00000000 --- a/v/VASP/VASP-5.4.4-intel-2015b-mkl=sequential.eb +++ /dev/null @@ -1,61 +0,0 @@ -easyblock = 'MakeCp' - -name = 'VASP' -version = '5.4.4' -versionsuffix = '-mkl=sequential' - -homepage = 'http://www.vasp.at' -description = """The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale -materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, -from first principles. - -To use VASP, You need academic licenses from University of Wiena. Follow the instructions https://www.vasp.at/index.php/faqs. - -Then send us please a list of authorized users and their ID for which you need this access. Please use only http://support.it4i.cz/rt. We are responsible to verify your licenses. After succesfull verification You will be granted to use VASP in our enviroment.""" - -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'pic': True, 'usempi': True} - -# Vasp is proprietary software, see http://www.vasp.at/index.php/faqs on -# how to get access to the code -sources = ['%(namelower)s.%(version)s.tar.gz'] - -checksums = ['8ac646b108f974371eef398973373bf6'] - -dependencies = [ - ('zlib', '1.2.11', '', True), -] - -prebuildopts = 'cp arch/makefile.include.linux_intel ./makefile.include && ' - -# path to libfftw3xf_intel.a is hardcoded in makefile.include -prebuildopts += 'sed -i "s|\$(MKLROOT)/interfaces/fftw3xf|\$(FFTW_LIB_DIR)|" makefile.include && ' - -# remove mkl flag to prevent mixing dynamic libs with the static libs in LIBBLACS/SCALAPACK -#prebuildopts += 'sed -i "s|-mkl=sequential|-mkl=cluster|" makefile.include && ' - -# OFLAG = -O2 -xAVX -prebuildopts += 'sed -i "s|OFLAG = -O2|OFLAG = -O3 -xAVX|" makefile.include && ' - -# objects add MKLROOT -prebuildopts += 'sed -i "s|OBJECTS = fftmpiw.o fftmpi_map.o fft3dlib.o fftw3d.o|OBJECTS = fftmpiw.o fftmpi_map.o fft3dlib.o fftw3d.o \$\(MKLROOT\)/lib/intel64_lin/libfftw3xf_intel.a|" makefile.include && ' - -# VASP uses LIBS as a list of folders -prebuildopts += 'unset LIBS && ' - -#prebuildopts += 'exit 1' - -buildopts = 'all BLACS="$LIBBLACS" SCALAPACK="$LIBSCALAPACK" ' - -parallel = 1 - -files_to_copy = [(['bin/vasp_std', 'bin/vasp_gam', 'bin/vasp_ncl'], 'bin')] - -sanity_check_paths = { - 'files': ['bin/vasp_std', 'bin/vasp_gam', 'bin/vasp_ncl'], - 'dirs': [] -} - -modluafooter = 'add_property("state","testing")' - -moduleclass = 'phys' diff --git a/v/VASP/VASP-5.4.4-intel-2016a-CUDA-8.0.44-mkl=sequential.eb b/v/VASP/VASP-5.4.4-intel-2016a-CUDA-8.0.44-mkl=sequential.eb deleted file mode 100644 index f701765f..00000000 --- a/v/VASP/VASP-5.4.4-intel-2016a-CUDA-8.0.44-mkl=sequential.eb +++ /dev/null @@ -1,75 +0,0 @@ -easyblock = 'MakeCp' - -name = 'VASP' -version = '5.4.4' -versionsuffix = '-CUDA-8.0.44-mkl=sequential' - -homepage = 'http://www.vasp.at' -description = """The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale -materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, -from first principles. - -To use VASP, You need academic licenses from University of Wiena. Follow the instructions https://www.vasp.at/index.php/faqs. - -Then send us please a list of authorized users and their ID for which you need this access. Please use only http://support.it4i.cz/rt. We are responsible to verify your licenses. After succesfull verification You will be granted to use VASP in our enviroment.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -toolchainopts = {'pic': True, 'usempi': True} - -# Vasp is proprietary software, see http://www.vasp.at/index.php/faqs on -# how to get access to the code -sources = ['%(namelower)s.%(version)s.tar.gz'] - -checksums = ['8ac646b108f974371eef398973373bf6'] - -dependencies = [ - ('zlib', '1.2.11', '', True), - ('CUDA', '8.0.44', '', True), -] - -prebuildopts = 'cp arch/makefile.include.linux_intel ./makefile.include && ' - -# path to libfftw3xf_intel.a is hardcoded in makefile.include -prebuildopts += 'sed -i "s|\$(MKLROOT)/interfaces/fftw3xf|\$(FFTW_LIB_DIR)|" makefile.include && ' - -# remove mkl flag to prevent mixing dynamic libs with the static libs in -# LIBBLACS/SCALAPACK -prebuildopts += 'sed -i "s|-mkl=sequential ||" makefile.include && ' -prebuildopts += 'sed -i "s|BLAS =|BLAS = -mkl=sequential|" makefile.include && ' - -# FLAG -prebuildopts += 'sed -i "s|OFLAG = -O2|OFLAG = -O2 -ip -xHost|" makefile.include && ' -prebuildopts += 'sed -i "s|FFLAGS = -assume byterecl -w|FFLAGS = -FR -assume byterecl|" makefile.include && ' - -# CUDA -prebuildopts += 'sed -i "s|CUDA_ROOT ?= /usr/local/cuda/|CUDA_ROOT ?= $EBROOTCUDA|" makefile.include && ' - -# VASP uses LIBS as a list of folders -prebuildopts += 'unset LIBS && ' - -#prebuildopts += 'exit 1' - -#buildopts = 'all BLACS="$LIBBLACS" SCALAPACK="$LIBSCALAPACK" ' -buildopts = 'std gam ncl gpu gpu_ncl' - -parallel = 1 - -files_to_copy = [(['bin/vasp_std', - 'bin/vasp_gam', - 'bin/vasp_ncl', - 'bin/vasp_gpu_ncl', - 'bin/vasp_gpu'], - 'bin')] - -sanity_check_paths = { - 'files': [ - 'bin/vasp_std', - 'bin/vasp_gam', - 'bin/vasp_ncl', - 'bin/vasp_gpu_ncl', - 'bin/vasp_gpu'], - 'dirs': []} - -modluafooter = 'add_property("state","testing")' - -moduleclass = 'phys' diff --git a/v/Valgrind/Valgrind-3.11.0-foss-2015b.eb b/v/Valgrind/Valgrind-3.11.0-foss-2015b.eb deleted file mode 100644 index 1f344803..00000000 --- a/v/Valgrind/Valgrind-3.11.0-foss-2015b.eb +++ /dev/null @@ -1,36 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Ghent University -# Authors:: Fotis Georgatos , Ward Poelmans -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html -## - -easyblock = 'ConfigureMake' - -name = 'Valgrind' -version = "3.11.0" - -homepage = 'http://valgrind.org/downloads/' -description = "Valgrind: Debugging and profiling tools" - -toolchain = {'name': 'foss', 'version': '2015b'} - -source_urls = ['http://valgrind.org/downloads/'] -sources = [SOURCELOWER_TAR_BZ2] - -binaries = [ - 'callgrind_annotate', 'callgrind_control', 'cg_annotate', 'cg_diff', - 'cg_merge', 'ms_print', 'valgrind', 'valgrind-listener', 'vgdb' -] - -sanity_check_paths = { - 'files': ['bin/%s' % x for x in binaries], - 'dirs': [] -} - -moduleclass = 'debugger' diff --git a/v/Valgrind/Valgrind-3.11.0-intel-2015b.eb b/v/Valgrind/Valgrind-3.11.0-intel-2015b.eb deleted file mode 100644 index 02d9f722..00000000 --- a/v/Valgrind/Valgrind-3.11.0-intel-2015b.eb +++ /dev/null @@ -1,36 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Ghent University -# Authors:: Fotis Georgatos , Ward Poelmans -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html -## - -easyblock = 'ConfigureMake' - -name = 'Valgrind' -version = "3.11.0" - -homepage = 'http://valgrind.org/downloads/' -description = "Valgrind: Debugging and profiling tools" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['http://valgrind.org/downloads/'] -sources = [SOURCELOWER_TAR_BZ2] - -binaries = [ - 'callgrind_annotate', 'callgrind_control', 'cg_annotate', 'cg_diff', - 'cg_merge', 'ms_print', 'valgrind', 'valgrind-listener', 'vgdb' -] - -sanity_check_paths = { - 'files': ['bin/%s' % x for x in binaries], - 'dirs': [] -} - -moduleclass = 'debugger' diff --git a/w/WRF/WRF-3.8.0-intel-2016a-dmpar.eb b/w/WRF/WRF-3.8.0-intel-2016a-dmpar.eb deleted file mode 100644 index 221bd1f0..00000000 --- a/w/WRF/WRF-3.8.0-intel-2016a-dmpar.eb +++ /dev/null @@ -1,40 +0,0 @@ -name = 'WRF' -version = '3.8.0' - -homepage = 'http://www.wrf-model.org' -description = """The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale - numerical weather prediction system designed to serve both operational forecasting and atmospheric - research needs.""" - -toolchain = {'name': 'intel', 'version': '2016a'} -# don't use agressive optimization, stick to -O2 -toolchainopts = {'opt': False} - -sources = ['%(name)sV%(version_major_minor)s.TAR.gz'] -source_urls = [ - 'http://www2.mmm.ucar.edu/wrf/src/', - 'http://www.mmm.ucar.edu/wrf/src/', -] - -# csh is used by WRF install scripts -builddependencies = [('tcsh', '6.19.00')] - -dependencies = [ - ('JasPer', '1.900.1'), - ('netCDF', '4.4.0'), - ('netCDF-Fortran', '4.4.3'), -] - -patches = [ - 'WRF_parallel_build_fix.patch', - 'WRF_tests_limit-runtimes.patch', - 'WRF-%(version)s_netCDF-Fortran_separate_path.patch', -] - -# limit parallel build to 20 -maxparallel = 20 - -buildtype = "dmpar" -versionsuffix = '-%s' % buildtype - -moduleclass = 'geo' diff --git a/w/wget/wget-1.17.1-foss-2016a.eb b/w/wget/wget-1.17.1-foss-2016a.eb deleted file mode 100644 index bbebd9aa..00000000 --- a/w/wget/wget-1.17.1-foss-2016a.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'wget' -version = '1.17.1' - -homepage = 'https://www.gnu.org/software/wget/' -description = """GNU Wget is a free software package for retrieving files using HTTP, HTTPS and FTP, - the most widely-used Internet protocols. It is a non-interactive commandline tool, - so it may easily be called from scripts, cron jobs, terminals without X-Windows support, etc.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = [GNU_SOURCE] -sources = [SOURCE_TAR_XZ] - -dependencies = [ - #('gnutls', '3.4.11'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date gnutls for security reasons - ('PCRE', '8.38'), - ('libidn', '1.32'), - ('zlib', '1.2.8'), - #('OpenSSL', '1.0.1s'), # OS dependency should be preferred if the os version is more recent then this version, it's - # nice to have an up to date openssl for security reasons -] - -configopts = '--with-ssl=openssl ' - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] -# Optionally, you can use gnutls (default) instead of OpenSSL. -# Do not forget to comment out configopts in that case. -#osdependencies = [('gnutls-devel', 'gnutls-dev', 'libgnutls-devel')] - -sanity_check_paths = { - 'files': ['bin/wget'], - 'dirs': [] -} - -moduleclass = 'devel' diff --git a/w/wxPython/wxPython-3.0.2.0-intel-2016a-Python-2.7.11.eb b/w/wxPython/wxPython-3.0.2.0-intel-2016a-Python-2.7.11.eb deleted file mode 100644 index d4b444a1..00000000 --- a/w/wxPython/wxPython-3.0.2.0-intel-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,36 +0,0 @@ -name = 'wxPython' -version = '3.0.2.0' -versionsuffix = "-Python-%(pyver)s" - -homepage = 'http://www.wxpython.org' -description = """wxPython is a GUI toolkit for the Python programming language. - It allows Python programmers to create programs with a robust, - highly functional graphical user interface, simply and easily. - It is implemented as a Python extension module (native code) - that wraps the popular wxWidgets cross platform GUI library, - which is written in C++.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = [SOURCEFORGE_SOURCE] -sources = ['%(name)s-src-%(version)s.tar.bz2'] - -patches = ['%(name)s_%(version)s_intel.patch'] - -dependencies = [ - ('Python', '2.7.11'), - ('libpng', '1.6.21'), - ('zlib', '1.2.8'), - ('libjpeg-turbo', '1.4.2'), - ('LibTIFF', '4.0.6'), - ('expat', '2.1.0'), - ('GTK+', '2.24.28'), - ('GConf', '3.2.6'), - ('GST-plugins-base', '0.10.36'), - ('Mesa', '11.1.2'), - ('libGLU', '9.0.0'), - ('libSM', '1.2.2'), - ('libXxf86vm', '1.1.4'), -] - -moduleclass = 'vis' diff --git a/x/XKeyboardConfig/XKeyboardConfig-2.17-foss-2016a.eb b/x/XKeyboardConfig/XKeyboardConfig-2.17-foss-2016a.eb deleted file mode 100644 index 10d7fbd3..00000000 --- a/x/XKeyboardConfig/XKeyboardConfig-2.17-foss-2016a.eb +++ /dev/null @@ -1,36 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'XKeyboardConfig' -version = '2.17' - -homepage = 'http://www.freedesktop.org/wiki/Software/XKeyboardConfig/' -description = """The non-arch keyboard configuration database for X Window. - The goal is to provide the consistent, well-structured, - frequently released open source of X keyboard configuration data - for X Window System implementations (free, open source and commercial). - The project is targeted to XKB-based systems.""" - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['http://ftp.x.org/pub/individual/data/xkeyboard-config/'] -sources = ['xkeyboard-config-%(version)s.tar.bz2'] - -builddependencies = [ - ('libxslt', '1.1.28'), - ('gettext', '0.19.7'), - ('intltool', '0.51.0', '-Perl-5.22.1'), -] - -dependencies = [ - ('libX11', '1.6.3'), -] - -# see http://www.linuxfromscratch.org/blfs/view/svn/x/xkeyboard-config.html -configopts = '--with-xkb-rules-symlink=xorg ' - -sanity_check_paths = { - 'files': [], - 'dirs': ['share/X11/xkb'] -} - -moduleclass = 'devel' diff --git a/x/XKeyboardConfig/XKeyboardConfig-2.17-intel-2016a.eb b/x/XKeyboardConfig/XKeyboardConfig-2.17-intel-2016a.eb deleted file mode 100644 index e72178d9..00000000 --- a/x/XKeyboardConfig/XKeyboardConfig-2.17-intel-2016a.eb +++ /dev/null @@ -1,36 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'XKeyboardConfig' -version = '2.17' - -homepage = 'http://www.freedesktop.org/wiki/Software/XKeyboardConfig/' -description = """The non-arch keyboard configuration database for X Window. - The goal is to provide the consistent, well-structured, - frequently released open source of X keyboard configuration data - for X Window System implementations (free, open source and commercial). - The project is targeted to XKB-based systems.""" - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['http://ftp.x.org/pub/individual/data/xkeyboard-config/'] -sources = ['xkeyboard-config-%(version)s.tar.bz2'] - -builddependencies = [ - ('libxslt', '1.1.28'), - ('gettext', '0.19.7'), - ('intltool', '0.51.0', '-Perl-5.22.1'), -] - -dependencies = [ - ('libX11', '1.6.3'), -] - -# see http://www.linuxfromscratch.org/blfs/view/svn/x/xkeyboard-config.html -configopts = '--with-xkb-rules-symlink=xorg ' - -sanity_check_paths = { - 'files': [], - 'dirs': ['share/X11/xkb'] -} - -moduleclass = 'devel' diff --git a/x/XQilla/XQilla-2.3.0-foss-2015a.eb b/x/XQilla/XQilla-2.3.0-foss-2015a.eb deleted file mode 100644 index aa79e514..00000000 --- a/x/XQilla/XQilla-2.3.0-foss-2015a.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'XQilla' -version = '2.3.0' - -homepage = 'http://xqilla.sourceforge.net/HomePage' -description = """XQilla is an XQuery and XPath 2 library and command line utility written in C++, implemented on top of the Xerces-C∞ library.""" - -toolchain = {'name': 'foss', 'version': '2015a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [ - 'http://downloads.sourceforge.net/project/xqilla/xqilla/%s' % version, -] - -configopts = '--with-xerces=$EBROOTXERCESMINCPLUSPLUS' - -dependencies = [ - ('Xerces-C++', '3.1.1'), -] - -moduleclass = 'lib' diff --git a/x/XQilla/XQilla-2.3.0-intel-2015a.eb b/x/XQilla/XQilla-2.3.0-intel-2015a.eb deleted file mode 100644 index b169cb58..00000000 --- a/x/XQilla/XQilla-2.3.0-intel-2015a.eb +++ /dev/null @@ -1,22 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'XQilla' -version = '2.3.0' - -homepage = 'http://xqilla.sourceforge.net/HomePage' -description = """XQilla is an XQuery and XPath 2 library and command line utility written in C++, implemented on top of the Xerces-C∞ library.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [ - 'http://downloads.sourceforge.net/project/xqilla/xqilla/%s' % version, -] - -configopts = '--with-xerces=$EBROOTXERCESMINCPLUSPLUS' - -dependencies = [ - ('Xerces-C++', '3.1.1'), -] - -moduleclass = 'lib' diff --git a/x/XQilla/XQilla-2.3.2-foss-2015a.eb b/x/XQilla/XQilla-2.3.2-foss-2015a.eb deleted file mode 100644 index d7fbf953..00000000 --- a/x/XQilla/XQilla-2.3.2-foss-2015a.eb +++ /dev/null @@ -1,26 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'XQilla' -version = '2.3.2' - -homepage = 'http://xqilla.sourceforge.net/HomePage' - -description = """XQilla is an XQuery and XPath 2 library and command line -utility written in C++, implemented on top of the Xerces-C++ library.""" - -toolchain = {'name': 'foss', 'version': '2015a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [ - 'http://downloads.sourceforge.net/project/xqilla/', -] - -configopts = '--with-xerces=$EBROOTXERCESMINCPLUSPLUS' - -xerces_version = '3.1.2' - -dependencies = [ - ('Xerces-C++', xerces_version), -] - -moduleclass = 'lib' diff --git a/x/XQilla/XQilla-2.3.2-intel-2015a.eb b/x/XQilla/XQilla-2.3.2-intel-2015a.eb deleted file mode 100644 index 1fe03355..00000000 --- a/x/XQilla/XQilla-2.3.2-intel-2015a.eb +++ /dev/null @@ -1,26 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'XQilla' -version = '2.3.2' - -homepage = 'http://xqilla.sourceforge.net/HomePage' - -description = """XQilla is an XQuery and XPath 2 library and command line -utility written in C++, implemented on top of the Xerces-C++ library.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -sources = [SOURCE_TAR_GZ] -source_urls = [ - 'http://downloads.sourceforge.net/project/xqilla/', -] - -configopts = '--with-xerces=$EBROOTXERCESMINCPLUSPLUS' - -xerces_version = '3.1.2' - -dependencies = [ - ('Xerces-C++', xerces_version), -] - -moduleclass = 'lib' diff --git a/x/Xmipp/Xmipp-3.1-foss-2015a-Python-2.7.9.eb b/x/Xmipp/Xmipp-3.1-foss-2015a-Python-2.7.9.eb deleted file mode 100644 index fc928c6c..00000000 --- a/x/Xmipp/Xmipp-3.1-foss-2015a-Python-2.7.9.eb +++ /dev/null @@ -1,32 +0,0 @@ -name = 'Xmipp' -version = '3.1' - -homepage = 'http://xmipp.cnb.csic.es/' -description = "Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy." - -source_urls = ['http://xmipp.cnb.csic.es/Downloads/'] -sources = ['Xmipp-%(version)s-src.tar.gz'] - -toolchain = {'name': 'foss', 'version': '2015a'} - -patches = [ - 'Xmipp-%(version)s_fix-sqlite-includes.patch', - 'Xmipp-%(version)s_fix-library-includes.patch', - 'Xmipp_install-script.patch', -] - -pyver = '2.7.9' -versionsuffix = '-Python-%s' % pyver - -dependencies = [ - ('Java', '1.8.0_40', '', True), - ('Python', pyver), # should have a working sqlite, and provide numpy/mpi4py - ('LibTIFF', '4.0.4beta'), - ('HDF5', '1.8.14'), - ('libjpeg-turbo', '1.4.0'), - ('FFTW', '3.3.4', '', ('gompi', '2015a')), - ('SQLite', '3.8.8.1'), # must match SQLite used by Python - ('matplotlib', '1.4.3', versionsuffix), -] - -moduleclass = 'vis' diff --git a/x/Xmipp/Xmipp-3.1-intel-2015a-Python-2.7.9.eb b/x/Xmipp/Xmipp-3.1-intel-2015a-Python-2.7.9.eb deleted file mode 100644 index 82d76eef..00000000 --- a/x/Xmipp/Xmipp-3.1-intel-2015a-Python-2.7.9.eb +++ /dev/null @@ -1,32 +0,0 @@ -name = 'Xmipp' -version = '3.1' - -homepage = 'http://xmipp.cnb.csic.es/' -description = "Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy." - -source_urls = ['http://xmipp.cnb.csic.es/Downloads/'] -sources = ['Xmipp-%(version)s-src.tar.gz'] - -toolchain = {'name': 'intel', 'version': '2015a'} - -patches = [ - 'Xmipp-%(version)s_fix-sqlite-includes.patch', - 'Xmipp-%(version)s_fix-library-includes.patch', - 'Xmipp_install-script.patch', -] - -pyver = '2.7.9' -versionsuffix = '-Python-%s' % pyver - -dependencies = [ - ('Java', '1.8.0_40', '', True), - ('Python', pyver), # should have a working sqlite, and provide numpy/mpi4py - ('LibTIFF', '4.0.4beta'), - ('HDF5', '1.8.14'), - ('libjpeg-turbo', '1.4.0'), - ('FFTW', '3.3.4'), - ('SQLite', '3.8.8.1'), # must match SQLite used by Python - ('matplotlib', '1.4.3', versionsuffix), -] - -moduleclass = 'vis' diff --git a/x/xbitmaps/xbitmaps-1.1.1-intel-2015b.eb b/x/xbitmaps/xbitmaps-1.1.1-intel-2015b.eb deleted file mode 100644 index e2425f88..00000000 --- a/x/xbitmaps/xbitmaps-1.1.1-intel-2015b.eb +++ /dev/null @@ -1,19 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'xbitmaps' -version = '1.1.1' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """provides bitmaps for x""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://xorg.freedesktop.org/archive/individual/data/'] - -sanity_check_paths = { - 'files': ['include/X11/bitmaps/gray'], - 'dirs': [] -} - -moduleclass = 'devel' diff --git a/x/xcb-proto/xcb-proto-1.11-intel-2015b-Python-2.7.9.eb b/x/xcb-proto/xcb-proto-1.11-intel-2015b-Python-2.7.9.eb deleted file mode 100644 index 6ee5ff18..00000000 --- a/x/xcb-proto/xcb-proto-1.11-intel-2015b-Python-2.7.9.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'xcb-proto' -version = '1.11' - -homepage = 'http://xcb.freedesktop.org/' -description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, -latency hiding, direct access to the protocol, improved threading support, and extensibility.""" - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['http://xcb.freedesktop.org/dist/'] -sources = [SOURCELOWER_TAR_GZ] - -python = 'Python' -pyver = '2.7.9' -versionsuffix = '-%s-%s' % (python, pyver) -dependencies = [(python, pyver)] - -pyshortver = '.'.join(pyver.split('.')[0:2]) - -sanity_check_paths = { - 'files': ['lib/pkgconfig/xcb-proto.pc'], - 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] -} - -moduleclass = 'devel' diff --git a/x/xdrfile/xdrfile-1.1.4-foss-2015g.eb b/x/xdrfile/xdrfile-1.1.4-foss-2015g.eb deleted file mode 100644 index 888153b6..00000000 --- a/x/xdrfile/xdrfile-1.1.4-foss-2015g.eb +++ /dev/null @@ -1,17 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'xdrfile' -version = '1.1.4' - -homepage = 'http://www.gromacs.org/Developer_Zone/Programming_Guide/XTC_Library' -description = """XTC library - """ - -toolchain = {'name': 'foss', 'version': '2015g'} - -source_urls = ['ftp://ftp.gromacs.org/pub/contrib/'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '--with-pic' - -moduleclass = 'chem' diff --git a/x/xdrfile/xdrfile-1.1.4-foss-2016a.eb b/x/xdrfile/xdrfile-1.1.4-foss-2016a.eb deleted file mode 100644 index aa05056b..00000000 --- a/x/xdrfile/xdrfile-1.1.4-foss-2016a.eb +++ /dev/null @@ -1,17 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'xdrfile' -version = '1.1.4' - -homepage = 'http://www.gromacs.org/Developer_Zone/Programming_Guide/XTC_Library' -description = """XTC library - """ - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['ftp://ftp.gromacs.org/pub/contrib/'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '--with-pic' - -moduleclass = 'chem' diff --git a/x/xdrfile/xdrfile-1.1.4-intel-2015b.eb b/x/xdrfile/xdrfile-1.1.4-intel-2015b.eb deleted file mode 100644 index c81487c5..00000000 --- a/x/xdrfile/xdrfile-1.1.4-intel-2015b.eb +++ /dev/null @@ -1,17 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'xdrfile' -version = '1.1.4' - -homepage = 'http://www.gromacs.org/Developer_Zone/Programming_Guide/XTC_Library' -description = """XTC library - """ - -toolchain = {'name': 'intel', 'version': '2015b'} - -source_urls = ['ftp://ftp.gromacs.org/pub/contrib/'] -sources = [SOURCELOWER_TAR_GZ] - -configopts = '--with-pic' - -moduleclass = 'chem' diff --git a/y/Yade/Yade-1.20.0-foss-2016a-Python-2.7.11.eb b/y/Yade/Yade-1.20.0-foss-2016a-Python-2.7.11.eb deleted file mode 100644 index 80e89ffd..00000000 --- a/y/Yade/Yade-1.20.0-foss-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,72 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'Yade' -version = '1.20.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://yade-dem.org/doc/' -description = """ Yade is an extensible open-source framework for discrete numerical models, - focused on Discrete Element Method. The computation parts are written in c++ using flexible object model, - allowing independent implementation of new alogrithms and interfaces. - Python is used for rapid and concise scene construction, simulation control, postprocessing and debugging. """ - -toolchain = {'name': 'foss', 'version': '2016a'} - -source_urls = ['https://launchpad.net/yade/trunk/yade-1.00.0/+download/'] -sources = [SOURCELOWER_TAR_GZ] - -mesaver = '11.2.1' -dependencies = [ - ('Boost', '1.60.0', versionsuffix), - ('CGAL', '4.8', versionsuffix), - ('Eigen', '3.2.7'), - ('GDB', '7.10.1', versionsuffix), - ('GL2PS', '1.3.9', '-Mesa-%s' % mesaver), - ('GTS', '0.7.6'), - ('IPython', '3.2.3', versionsuffix), - ('libQGLViewer', '2.6.3', '-Mesa-%s' % mesaver), - ('Loki', '0.1.7'), - ('matplotlib', '1.5.1', versionsuffix + '-freetype-2.6.3'), - ('minieigen', '0.5.3', versionsuffix), - ('PyGTS', '0.3.1', versionsuffix), - ('Python', '2.7.11'), - ('Qt', '4.8.7', '-GLib-2.48.0'), - ('SQLite', '3.9.2'), - ('VTK', '6.3.0', versionsuffix), - ('zlib', '1.2.8'), -] - -builddependencies = [('CMake', '3.5.2')] - -separate_build_dir = True - -configopts = '-DENABLE_GUI=OFF -DENABLE_LINSOLV=OFF -DENABLE_PFVFLOW=OFF ' -configopts += '-DCGAL_INCLUDE_DIR=$EBROOTCGAL/include ' -configopts += '-DGMP_INCLUDE_DIR=$EBROOTGMP/include -DGMP_LIBRARIES=$EBROOTGMP/lib -DGMPXX_LIBRARIES=$EBROOTGMP/lib ' - -modextrapaths = { - 'LD_LIBRARY_PATH': [ - 'lib64/lib64/yade-%(version)s', - 'lib/x86_64-linux-gnu/yade-%(version)s'], - 'LIBRARY_PATH': [ - 'lib64/lib64/yade-%(version)s', - 'lib/x86_64-linux-gnu/yade-%(version)s'], - 'PYTHONPATH': [ - 'lib/x86_64-linux-gnu/yade-%(version)s/py', - 'lib64/yade-%(version)s/py'], -} - -sanity_check_paths = { - 'files': [ - 'bin/yade-%(version)s', - 'bin/yade-%(version)s-batch', - ('lib/x86_64-linux-gnu/yade-%%(version)s/libyade.%s' % - SHLIB_EXT, - 'lib64/yade-%%(version)s/libyade.%s' % - SHLIB_EXT)], - 'dirs': [ - ('lib/x86_64-linux-gnu/yade-%(version)s/py/yade', - 'lib64/yade-%(version)s/py/yade')], -} - -moduleclass = 'devel' diff --git a/y/Yade/Yade-1.20.0-intel-2016a-Python-2.7.11.eb b/y/Yade/Yade-1.20.0-intel-2016a-Python-2.7.11.eb deleted file mode 100644 index 092bd21c..00000000 --- a/y/Yade/Yade-1.20.0-intel-2016a-Python-2.7.11.eb +++ /dev/null @@ -1,72 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'Yade' -version = '1.20.0' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://yade-dem.org/doc/' -description = """ Yade is an extensible open-source framework for discrete numerical models, - focused on Discrete Element Method. The computation parts are written in c++ using flexible object model, - allowing independent implementation of new alogrithms and interfaces. - Python is used for rapid and concise scene construction, simulation control, postprocessing and debugging. """ - -toolchain = {'name': 'intel', 'version': '2016a'} - -source_urls = ['https://launchpad.net/yade/trunk/yade-1.00.0/+download/'] -sources = [SOURCELOWER_TAR_GZ] - -mesaver = '11.2.1' -dependencies = [ - ('Boost', '1.60.0', versionsuffix), - ('CGAL', '4.8', versionsuffix), - ('Eigen', '3.2.7'), - ('GDB', '7.10.1', versionsuffix), - ('GL2PS', '1.3.9', '-Mesa-%s' % mesaver), - ('GTS', '0.7.6'), - ('IPython', '3.2.3', versionsuffix), - ('libQGLViewer', '2.6.3', '-Mesa-%s' % mesaver), - ('Loki', '0.1.7'), - ('matplotlib', '1.5.1', versionsuffix + '-freetype-2.6.3'), - ('minieigen', '0.5.3', versionsuffix), - ('PyGTS', '0.3.1', versionsuffix), - ('Python', '2.7.11'), - ('Qt', '4.8.7', '-GLib-2.48.0'), - ('SQLite', '3.9.2'), - ('VTK', '6.3.0', versionsuffix), - ('zlib', '1.2.8'), -] - -builddependencies = [('CMake', '3.5.2')] - -separate_build_dir = True - -configopts = '-DENABLE_GUI=OFF -DENABLE_LINSOLV=OFF -DENABLE_PFVFLOW=OFF ' -configopts += '-DCGAL_INCLUDE_DIR=$EBROOTCGAL/include ' -configopts += '-DGMP_INCLUDE_DIR=$EBROOTGMP/include -DGMP_LIBRARIES=$EBROOTGMP/lib -DGMPXX_LIBRARIES=$EBROOTGMP/lib ' - -modextrapaths = { - 'LD_LIBRARY_PATH': [ - 'lib64/lib64/yade-%(version)s', - 'lib/x86_64-linux-gnu/yade-%(version)s'], - 'LIBRARY_PATH': [ - 'lib64/lib64/yade-%(version)s', - 'lib/x86_64-linux-gnu/yade-%(version)s'], - 'PYTHONPATH': [ - 'lib/x86_64-linux-gnu/yade-%(version)s/py', - 'lib64/yade-%(version)s/py'], -} - -sanity_check_paths = { - 'files': [ - 'bin/yade-%(version)s', - 'bin/yade-%(version)s-batch', - ('lib/x86_64-linux-gnu/yade-%%(version)s/libyade.%s' % - SHLIB_EXT, - 'lib64/yade-%%(version)s/libyade.%s' % - SHLIB_EXT)], - 'dirs': [ - ('lib/x86_64-linux-gnu/yade-%(version)s/py/yade', - 'lib64/yade-%(version)s/py/yade')], -} - -moduleclass = 'devel' diff --git a/y/Yade/Yade-2016.06a-foss-2016b-Python-2.7.12.eb b/y/Yade/Yade-2016.06a-foss-2016b-Python-2.7.12.eb deleted file mode 100644 index 8117c820..00000000 --- a/y/Yade/Yade-2016.06a-foss-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,75 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'Yade' -version = '2016.06a' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://yade-dem.org/doc/' -description = """ Yade is an extensible open-source framework for discrete numerical models, - focused on Discrete Element Method. The computation parts are written in c++ using flexible object model, - allowing independent implementation of new alogrithms and interfaces. - Python is used for rapid and concise scene construction, simulation control, postprocessing and debugging. """ - -toolchain = {'name': 'foss', 'version': '2016b'} - -source_urls = ['https://launchpad.net/yade/trunk/yade-1.00.0/+download/'] -sources = [SOURCELOWER_TAR_GZ] -patches = ['Yade-%(version)s_include-signal.patch'] - -dependencies = [ - ('Boost', '1.61.0', versionsuffix), - ('bzip2', '1.0.6'), - ('CGAL', '4.8.1', versionsuffix), - ('GDB', '7.11.1', versionsuffix), - ('GL2PS', '1.3.9'), - ('GTS', '0.7.6'), - ('IPython', '5.1.0', versionsuffix), - ('libQGLViewer', '2.6.3'), - ('Loki', '0.1.7'), - ('matplotlib', '1.5.2', versionsuffix), - ('minieigen', '0.5.3', versionsuffix), - ('PyGTS', '0.3.1', versionsuffix), - ('Python', '2.7.12'), - ('Qt5', '5.7.0'), - ('SQLite', '3.13.0'), - ('VTK', '6.3.0', versionsuffix), - ('zlib', '1.2.8'), -] - -builddependencies = [ - ('CMake', '3.6.1'), - ('Eigen', '3.2.9'), -] - -separate_build_dir = True - -configopts = '-DENABLE_GUI=OFF -DENABLE_LINSOLV=OFF -DENABLE_PFVFLOW=OFF ' -configopts += '-DCGAL_INCLUDE_DIR=$EBROOTCGAL/include ' -configopts += '-DGMP_INCLUDE_DIR=$EBROOTGMP/include -DGMP_LIBRARIES=$EBROOTGMP/lib -DGMPXX_LIBRARIES=$EBROOTGMP/lib ' - -modextrapaths = { - 'LD_LIBRARY_PATH': [ - 'lib64/lib64/yade-%(version)s', - 'lib/x86_64-linux-gnu/yade-%(version)s'], - 'LIBRARY_PATH': [ - 'lib64/lib64/yade-%(version)s', - 'lib/x86_64-linux-gnu/yade-%(version)s'], - 'PYTHONPATH': [ - 'lib/x86_64-linux-gnu/yade-%(version)s/py', - 'lib64/yade-%(version)s/py'], -} - -sanity_check_paths = { - 'files': [ - 'bin/yade-%(version)s', - 'bin/yade-%(version)s-batch', - ('lib/x86_64-linux-gnu/yade-%%(version)s/libyade.%s' % - SHLIB_EXT, - 'lib64/yade-%%(version)s/libyade.%s' % - SHLIB_EXT)], - 'dirs': [ - ('lib/x86_64-linux-gnu/yade-%(version)s/py/yade', - 'lib64/yade-%(version)s/py/yade')], -} - -moduleclass = 'devel' diff --git a/y/Yade/Yade-2016.06a-intel-2016b-Python-2.7.12.eb b/y/Yade/Yade-2016.06a-intel-2016b-Python-2.7.12.eb deleted file mode 100644 index 6a74ac39..00000000 --- a/y/Yade/Yade-2016.06a-intel-2016b-Python-2.7.12.eb +++ /dev/null @@ -1,74 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'Yade' -version = '2016.06a' -versionsuffix = '-Python-%(pyver)s' - -homepage = 'https://yade-dem.org/doc/' -description = """ Yade is an extensible open-source framework for discrete numerical models, - focused on Discrete Element Method. The computation parts are written in c++ using flexible object model, - allowing independent implementation of new alogrithms and interfaces. - Python is used for rapid and concise scene construction, simulation control, postprocessing and debugging. """ - -toolchain = {'name': 'intel', 'version': '2016b'} - -source_urls = ['https://launchpad.net/yade/trunk/yade-1.00.0/+download/'] -sources = [SOURCELOWER_TAR_GZ] -patches = ['Yade-%(version)s_include-signal.patch'] - -dependencies = [ - ('Boost', '1.61.0', versionsuffix), - ('CGAL', '4.8.1', versionsuffix), - ('GDB', '7.11.1', versionsuffix), - ('GL2PS', '1.3.9'), - ('GTS', '0.7.6'), - ('IPython', '5.1.0', versionsuffix), - ('libQGLViewer', '2.6.3'), - ('Loki', '0.1.7'), - ('matplotlib', '1.5.2', versionsuffix), - ('minieigen', '0.5.3', versionsuffix), - ('PyGTS', '0.3.1', versionsuffix), - ('Python', '2.7.12'), - ('Qt5', '5.7.0'), - ('SQLite', '3.13.0'), - ('VTK', '6.3.0', versionsuffix), - ('zlib', '1.2.8'), -] - -builddependencies = [ - ('CMake', '3.6.1'), - ('Eigen', '3.2.9'), -] - -separate_build_dir = True - -configopts = '-DENABLE_GUI=OFF -DENABLE_LINSOLV=OFF -DENABLE_PFVFLOW=OFF ' -configopts += '-DCGAL_INCLUDE_DIR=$EBROOTCGAL/include ' -configopts += '-DGMP_INCLUDE_DIR=$EBROOTGMP/include -DGMP_LIBRARIES=$EBROOTGMP/lib -DGMPXX_LIBRARIES=$EBROOTGMP/lib ' - -modextrapaths = { - 'LD_LIBRARY_PATH': [ - 'lib64/lib64/yade-%(version)s', - 'lib/x86_64-linux-gnu/yade-%(version)s'], - 'LIBRARY_PATH': [ - 'lib64/lib64/yade-%(version)s', - 'lib/x86_64-linux-gnu/yade-%(version)s'], - 'PYTHONPATH': [ - 'lib/x86_64-linux-gnu/yade-%(version)s/py', - 'lib64/yade-%(version)s/py'], -} - -sanity_check_paths = { - 'files': [ - 'bin/yade-%(version)s', - 'bin/yade-%(version)s-batch', - ('lib/x86_64-linux-gnu/yade-%%(version)s/libyade.%s' % - SHLIB_EXT, - 'lib64/yade-%%(version)s/libyade.%s' % - SHLIB_EXT)], - 'dirs': [ - ('lib/x86_64-linux-gnu/yade-%(version)s/py/yade', - 'lib64/yade-%(version)s/py/yade')], -} - -moduleclass = 'devel' diff --git a/y/Yambo/Yambo-3.4.2-intel-2016.02-GCC-4.9.eb b/y/Yambo/Yambo-3.4.2-intel-2016.02-GCC-4.9.eb deleted file mode 100644 index e487e11e..00000000 --- a/y/Yambo/Yambo-3.4.2-intel-2016.02-GCC-4.9.eb +++ /dev/null @@ -1,49 +0,0 @@ -easyblock = 'MakeCp' - -name = 'Yambo' -version = '3.4.2' - -homepage = 'http://www.yambo-code.org' -description = """Yambo is a FORTRAN/C code for Many-Body calculations in solid state and molecular physics. - Yambo relies on the Kohn-Sham wavefunctions generated by two DFT public codes: abinit, and PWscf.""" - -toolchain = {'name': 'intel', 'version': '2016.02-GCC-4.9'} -toolchainopts = {'usempi': True} - -sources = [SOURCELOWER_TGZ] -source_urls = ['http://qe-forge.org/gf/download/frsrelease/208/932/'] -checksums = ['f0820a0f42dfc81ce3811af647bed777'] - -dependencies = [('netCDF-Fortran', '4.4.2')] - -with_configure = 'True' - -configopts = 'CPPFLAGS="" FCFLAGS="-nofor_main" --with-blas-libs="$LIBBLAS" ' -configopts += '--with-lapack-libs="$LIBLAPACK" --with-blacs-libs="$LIBBLACS" ' -configopts += '--with-scalapack-libs="$LIBSCALAPACK" --with-fft-libs="$LIBFFT" ' -configopts += '--with-netcdf-libs="-lnetcdff -lnetcdf"' - -buildopts = 'all' - -parallel = 1 - -files_to_copy = [(['bin/*'], 'bin')] - -sanity_check_paths = { - 'files': [ - 'bin/' + - prog for prog in [ - 'a2y', - 'iotk', - 'iotk.x', - 'p2y', - 'yambo', - 'yambo_kerr', - 'yambo_ph', - 'yambo_surf', - 'ypp', - 'ypp_ph', - 'ypp_surf']], - 'dirs': []} - -moduleclass = 'phys'