diff --git a/c/CP2K/CP2K-5.1.eb b/c/CP2K/CP2K-5.1.0-GCC-6.3.0-2.27.eb similarity index 84% rename from c/CP2K/CP2K-5.1.eb rename to c/CP2K/CP2K-5.1.0-GCC-6.3.0-2.27.eb index cdbc4012..acf5d171 100644 --- a/c/CP2K/CP2K-5.1.eb +++ b/c/CP2K/CP2K-5.1.0-GCC-6.3.0-2.27.eb @@ -8,7 +8,7 @@ # make -j 28 ARCH=local VERSION="popt" # name = 'CP2K' -version = '5.1' +version = '5.1.0' homepage = 'http://www.cp2k.org/' description = """CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular @@ -16,9 +16,9 @@ description = """CP2K is a freely available (GPL) program, written in Fortran 95 methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials. """ -toolchain = SYSTEM +toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'} -source_urls = ['https://github.com/cp2k/cp2k/archive'] +source_urls = ['https://github.com/cp2k/cp2k/archive/'] sources = ['v%(version)s.tar.gz'] patches = [ @@ -28,12 +28,12 @@ patches = [ modextrapaths = {'PATH': 'exe/local'} dependencies = [ - ('MPICH', '3.2.1', '', ('GCC', '6.3.0-2.27')), - ('imkl', '2017.1.132', '', ('iimpi', '2017a')), + ('MPICH', '3.2.1'), + ('mkl', '2020.0.166', '', True), ] builddependencies = [ - ('CMake', '3.9.1', '', True), + ('CMake', '3.16.2', '', True), ] moduleclass = 'chem' diff --git a/c/CP2K/CP2K-7.1-intel-2017c.eb b/c/CP2K/CP2K-7.1-intel-2017c.eb new file mode 100644 index 00000000..88586a85 --- /dev/null +++ b/c/CP2K/CP2K-7.1-intel-2017c.eb @@ -0,0 +1,43 @@ +# IT4Innovations 2020 + +name = 'CP2K' +version = '7.1' + +homepage = 'http://www.cp2k.org/' +description = """CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular + simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different + methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and + classical pair and many-body potentials. """ + +toolchain = {'name': 'intel', 'version': '2017c'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/cp2k/cp2k/releases/download/v%(version)s.0/'] +sources = [SOURCELOWER_TAR_BZ2] +#patches = [ +# 'CP2K-2.4.0-fix_compile_date_lastsvn.patch', +#] + +dependencies = [ + ('Libint', '1.1.6'), +# ('libxc', '4.3.4'), + ('libxsmm', '1.8.3'), + ('FFTW', '3.3.8'), + ('PLUMED', '2.4.2'), +] + +builddependencies = [ + ('flex', '2.6.4', '', True), + ('Bison', '3.0.4', '', True), +] + +# values to use here are +1 those used for building Libint +# see https://github.com/cp2k/cp2k/blob/master/cp2k/tools/hfx_tools/libint_tools/README_LIBINT +extradflags = "-D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5" + +# regression test reports failures +ignore_regtest_fails = True + +parallel = 1 + +moduleclass = 'chem' diff --git a/c/CP2K/CP2K-7.1-intel-2020a.eb b/c/CP2K/CP2K-7.1-intel-2020a.eb new file mode 100644 index 00000000..ebe13114 --- /dev/null +++ b/c/CP2K/CP2K-7.1-intel-2020a.eb @@ -0,0 +1,45 @@ +# IT4Innovations 2020 + +name = 'CP2K' +version = '7.1' + +homepage = 'http://www.cp2k.org/' +description = """CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular + simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different + methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and + classical pair and many-body potentials. """ + +toolchain = {'name': 'intel', 'version': '2020a'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/cp2k/cp2k/releases/download/v%(version)s.0/'] +sources = [SOURCELOWER_TAR_BZ2] +patches = [ + 'CP2K-2.4.0-fix_compile_date_lastsvn.patch', +] +checksums = [ + 'af803558e0a6b9e9d9ce8a3ab955ba32bacd179922455424e061c82c9fefa34b', # cp2k-6.1.tar.bz2 + '02475cbe24c8d4ba27037c826adf8a534cad634c3c4e02c21d743f5284516bda', # CP2K-2.4.0-fix_compile_date_lastsvn.patch +] + +dependencies = [ + ('Libint', '1.1.6'), + ('libxc', '4.3.4'), + ('libxsmm', '1.8.3'), + ('FFTW', '3.3.8'), + ('PLUMED', '2.4.0'), +] + +builddependencies = [ + ('flex', '2.6.4', '', True), + ('Bison', '3.0.5', '', True), +] + +# values to use here are +1 those used for building Libint +# see https://github.com/cp2k/cp2k/blob/master/cp2k/tools/hfx_tools/libint_tools/README_LIBINT +extradflags = "-D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5" + +# regression test reports failures +ignore_regtest_fails = True + +moduleclass = 'chem' diff --git a/g/GSL/GSL-2.5-intel-2020a.eb b/g/GSL/GSL-2.5-intel-2020a.eb new file mode 100644 index 00000000..b9bfd427 --- /dev/null +++ b/g/GSL/GSL-2.5-intel-2020a.eb @@ -0,0 +1,22 @@ +# IT4Innovations 2020 + +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '2.5' + +homepage = 'http://www.gnu.org/software/gsl/' + +description = """ + The GNU Scientific Library (GSL) is a numerical library for C and C++ + programmers. The library provides a wide range of mathematical routines + such as random number generators, special functions and least-squares fitting. +""" + +toolchain = {'name': 'intel', 'version': '2020a'} +toolchainopts = {'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +moduleclass = 'numlib' diff --git a/h/HTSlib/HTSlib-1.9-intel-2020a.eb b/h/HTSlib/HTSlib-1.9-intel-2020a.eb new file mode 100644 index 00000000..c8cde508 --- /dev/null +++ b/h/HTSlib/HTSlib-1.9-intel-2020a.eb @@ -0,0 +1,28 @@ +# IT4Innovations 2020 + +easyblock = 'ConfigureMake' + +name = 'HTSlib' +version = '1.9' + +homepage = "http://www.htslib.org/" +description = """ A C library for reading/writing high-throughput sequencing data. + This package includes the utilities bgzip and tabix """ + +toolchain = {'name': 'intel', 'version': '2020a'} + +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s/'] +sources = [SOURCELOWER_TAR_BZ2] + +dependencies = [ + ('zlib', '1.2.11', '', True), + ('bzip2', '1.0.6', '', True), + ('XZ', '5.2.4', '', True), +] + +sanity_check_paths = { + 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.%s" % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/l/Libint/Libint-1.1.6-intel-2020a.eb b/l/Libint/Libint-1.1.6-intel-2020a.eb new file mode 100644 index 00000000..acb2c8b0 --- /dev/null +++ b/l/Libint/Libint-1.1.6-intel-2020a.eb @@ -0,0 +1,36 @@ +# IT4Innovations 2020 + +name = 'Libint' +version = '1.1.6' + +homepage = 'https://sourceforge.net/p/libint/' +description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body + matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" + +toolchain = {'name': 'intel', 'version': '2020a'} +toolchainopts = {'pic': True} + +sources = ['release-%s.tar.gz' % '-'.join(version.split('.'))] +source_urls = ['https://github.com/evaleev/libint/archive/'] + +builddependencies = [ + ('Autotools', '20180311', '', True) +] + +preconfigopts = "aclocal -I lib/autoconf && libtoolize && autoconf && " + +configopts = "--enable-deriv --enable-r12" + +sanity_check_paths = { + 'files': [ + 'include/lib%(x)s/lib%(x)s.h' % + { + 'x': x} for x in [ + 'deriv', 'int', 'r12']] + [ + 'include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + [ + 'lib/lib%s.%s' % + (x, y) for x in [ + 'deriv', 'int', 'r12'] for y in [ + 'a', SHLIB_EXT]], 'dirs': [], } + +moduleclass = 'chem' diff --git a/l/libxsmm/libxsmm-1.8.3-intel-2020a.eb b/l/libxsmm/libxsmm-1.8.3-intel-2020a.eb new file mode 100644 index 00000000..ac527934 --- /dev/null +++ b/l/libxsmm/libxsmm-1.8.3-intel-2020a.eb @@ -0,0 +1,32 @@ +# IT4Innovatios 2019 + +easyblock = 'ConfigureMake' + +name = 'libxsmm' +version = '1.8.3' + +homepage = 'https://github.com/hfp/libxsmm' +description = """LIBXSMM is a library for small dense and small sparse matrix-matrix multiplications +targeting Intel Architecture (x86).""" + +toolchain = {'name': 'intel', 'version': '2020a'} + +sources = ['%(version)s.tar.gz'] +source_urls = ['https://github.com/hfp/libxsmm/archive/'] + +# install both static and dynamic version +installopts = ['PREFIX=%(installdir)s', 'PREFIX=%(installdir)s STATIC=0'] + +skipsteps = ['configure'] +maxparallel = 1 + +sanity_check_paths = { + 'files': [ + 'bin/libxsmm_gemm_generator', + 'include/libxsmm.h', + 'lib/libxsmm.a', + 'lib/libxsmm.%s' % + SHLIB_EXT], + 'dirs': ['share']} + +moduleclass = 'math' diff --git a/m/mpi4py/mpi4py-3.0.0-Py-2.7.eb b/m/mpi4py/mpi4py-3.0.0-Py-2.7.eb index 8b9d83bc..e8c70759 100644 --- a/m/mpi4py/mpi4py-3.0.0-Py-2.7.eb +++ b/m/mpi4py/mpi4py-3.0.0-Py-2.7.eb @@ -1,4 +1,4 @@ -# IT4Innovations 2018 +# IT4Innovations 2020 easyblock = 'PythonPackage' @@ -15,7 +15,7 @@ source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] dependencies = [ - ('OpenMPI', '2.0.2', '', ('GCC', '6.3.0-2.27')), + ('OpenMPI', '3.1.5', '', ('GCCcore', '8.3.0')), ] sanity_check_paths = { diff --git a/p/PLUMED/PLUMED-2.4.2-intel-2020a.eb b/p/PLUMED/PLUMED-2.4.2-intel-2020a.eb new file mode 100644 index 00000000..0b3e7ee1 --- /dev/null +++ b/p/PLUMED/PLUMED-2.4.2-intel-2020a.eb @@ -0,0 +1,46 @@ +# IT4Innovations 2020 + +easyblock = 'ConfigureMake' + +name = 'PLUMED' +version = '2.4.2' + +homepage = 'http://www.plumed-code.org' +description = """PLUMED is an open source library for free energy calculations in molecular systems which + works together with some of the most popular molecular dynamics engines. Free energy calculations can be + performed as a function of many order parameters with a particular focus on biological problems, using + state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. + The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. +""" + +toolchain = {'name': 'intel', 'version': '2020a'} +toolchainopts = {'usempi': 'True'} + +source_urls = ['https://github.com/plumed/plumed2/archive/'] +sources = ['v%(version)s.tar.gz'] + +dependencies = [ + ('zlib', '1.2.11', '', True), + ('GSL', '2.5'), + ('libmatheval', '1.1.11', '', True), +] + +preconfigopts = 'env FC=$MPIF90 LIBS="$LIBLAPACK $LIBS" ' +configopts = ' --exec-prefix=%(installdir)s --enable-gsl' +prebuildopts = 'source sourceme.sh && ' + +sanity_check_paths = { + 'files': [ + 'bin/plumed', + 'lib/libplumedKernel.%s' % + SHLIB_EXT, + 'lib/libplumed.%s' % + SHLIB_EXT], + 'dirs': ['lib/plumed']} + +modextrapaths = { + 'PLUMED_KERNEL': 'lib/libplumedKernel.%s' % SHLIB_EXT, + 'PLUMED_ROOT': 'lib/plumed', +} + +moduleclass = 'chem' diff --git a/p/Platypus/Platypus-20170509-Py-2.7.eb b/p/Platypus/Platypus-20170509-Py-2.7.eb index 6dbee447..5168b117 100644 --- a/p/Platypus/Platypus-20170509-Py-2.7.eb +++ b/p/Platypus/Platypus-20170509-Py-2.7.eb @@ -14,7 +14,7 @@ source_urls = ['https://github.com/andyrimmer/Platypus/archive'] sources = ['master.tar.gz'] dependencies = [ - ('HTSlib', '1.8', '', ['intel', '2017a']), + ('HTSlib', '1.9', '', ['intel', '2020a']), ('Cython', '0.27.3'), ]