new file: g/GROMACS/GROMACS-2021.4-intel-2020b-PLUMED-2.7.2.eb

new file:   m/Molpro/Molpro-mpp-2021.2.0.linux_x86_64_openmp.eb
	new file:   m/Molpro/Molpro-mpp-2021.3.1.linux_x86_64_mpipr.eb
	new file:   m/Molpro/Molpro-mpp-2021.3.1.linux_x86_64_sockets.eb
	new file:   p/PLUMED/PLUMED-2.7.3-intel-2020b-Python-3.8.6.eb
This commit is contained in:
Lukas Krupcik 2021-12-15 09:55:47 +01:00
parent 010183f670
commit 459edd6cd3
5 changed files with 163 additions and 0 deletions

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# IT4Innovations 2020
# LK
name = 'GROMACS'
version = '2021.4'
local_plum_ver = '2.7.3'
versionsuffix = '-PLUMED-%s' % local_plum_ver
homepage = 'http://www.gromacs.org'
description = """
GROMACS is a versatile package to perform molecular dynamics,
i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
This is a GPU enabled build, containing both MPI and threadMPI binaries.
"""
toolchain = {'name': 'intel', 'version': '2020b'}
toolchainopts = {'openmp': True, 'usempi': True}
source_urls = [
'https://ftp.gromacs.org/pub/gromacs/',
'ftp://ftp.gromacs.org/pub/gromacs/',
]
sources = [SOURCELOWER_TAR_GZ]
builddependencies = [
('CMake', '3.18.4'),
]
dependencies = [
('PLUMED', local_plum_ver, '-Python-3.8.6'),
]
moduleclass = 'bio'

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# IT4Innovations 2021
# LK
name = 'Molpro'
version = '2021.2.0'
versionprefix = 'mpp-'
versionsuffix = '.linux_x86_64_openmp'
homepage = 'https://www.molpro.net'
description = """Molpro is a local_complete system of ab initio programs for molecular electronic structure calculations."""
toolchain = SYSTEM
# no source URL available, requires registration to download
sources = ['%(namelower)s-%(versionprefix)s%(version)s%(versionsuffix)s.sh']
precompiled_binaries = True
# license file - uncomment if a licence file is supplied by your site and
# is valid for all users - the value of license_file may have to be changed
# license_file = HOME + '/licenses/%(name)s/license.lic'
moduleclass = 'chem'

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# IT4Innovations 2021
# LK
name = 'Molpro'
version = '2021.3.1'
versionprefix = 'mpp-'
versionsuffix = '.linux_x86_64_mpipr'
homepage = 'https://www.molpro.net'
description = """Molpro is a local_complete system of ab initio programs for molecular electronic structure calculations."""
toolchain = SYSTEM
# no source URL available, requires registration to download
sources = ['%(namelower)s-%(versionprefix)s%(version)s%(versionsuffix)s.sh']
precompiled_binaries = True
# license file - uncomment if a licence file is supplied by your site and
# is valid for all users - the value of license_file may have to be changed
# license_file = HOME + '/licenses/%(name)s/license.lic'
moduleclass = 'chem'

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# IT4Innovations 2021
# LK
name = 'Molpro'
version = '2021.3.1'
versionprefix = 'mpp-'
versionsuffix = '.linux_x86_64_sockets'
homepage = 'https://www.molpro.net'
description = """Molpro is a local_complete system of ab initio programs for molecular electronic structure calculations."""
toolchain = SYSTEM
# no source URL available, requires registration to download
sources = ['%(namelower)s-%(versionprefix)s%(version)s%(versionsuffix)s.sh']
precompiled_binaries = True
# license file - uncomment if a licence file is supplied by your site and
# is valid for all users - the value of license_file may have to be changed
# license_file = HOME + '/licenses/%(name)s/license.lic'
moduleclass = 'chem'

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# IT4Innovations
# LK 2021
easyblock = 'ConfigureMake'
name = 'PLUMED'
version = '2.7.3'
versionsuffix = '-Python-%(pyver)s'
homepage = 'https://www.plumed.org'
description = """PLUMED is an open source library for free energy calculations in molecular systems which
works together with some of the most popular molecular dynamics engines. Free energy calculations can be
performed as a function of many order parameters with a particular focus on biological problems, using
state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD.
The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.
"""
toolchain = {'name': 'intel', 'version': '2020b'}
toolchainopts = {'usempi': 'True'}
source_urls = ['https://github.com/plumed/plumed2/releases/download/v%(version)s/']
sources = [SOURCE_TGZ]
dependencies = [
('zlib', '1.2.11'),
('GSL', '2.6'),
('libmatheval', '1.1.11', '' , True),
('Python', '3.8.6'),
('SciPy-bundle', '2020.11'),
('Boost', '1.74.0'),
]
preconfigopts = 'env FC=$MPIF90 LIBS="$LIBLAPACK $LIBS" '
configopts = '--exec-prefix=%(installdir)s --enable-gsl --enable-modules=all --enable-python '
configopts += '--enable-boost_graph --enable-boost_serialization '
configopts += '--enable-asmjit '
prebuildopts = 'source sourceme.sh && '
# make sure that ld.gold linker is used
# required to work around problems like "ld: BFD (GNU Binutils) 2.30 assertion fail elf.c:3564"
# (problem with intel build but maintain consistency between easyconfigs)
buildopts = 'LD_RO="ld.gold -r -o"'
# install path for PLUMED libraries must be included in $LD_LIBRARY_PATH when Python bindings get built/installed
preinstallopts = 'LD_LIBRARY_PATH="%(installdir)s/lib:$LD_LIBRARY_PATH" '
sanity_check_paths = {
'files': ['bin/plumed', 'lib/libplumedKernel.%s' % SHLIB_EXT, 'lib/libplumed.%s' % SHLIB_EXT],
'dirs': [],
}
sanity_check_commands = ["python -c 'import plumed'"]
modextrapaths = {
'PLUMED_KERNEL': 'lib/libplumedKernel.%s' % SHLIB_EXT,
'PLUMED_ROOT': 'lib/plumed',
'PYTHONPATH': 'lib/plumed/python',
}
moduleclass = 'chem'