Merge branch 'it4i-salomon'

h/hwloc/hwloc-2.0.3-GCC-9.3.0.eb

@@ -0,0 +1,29 @@
+# IT4Innovations 2020
+# LK
+
+easyblock = 'ConfigureMake'
+
+name = 'hwloc'
+version = '2.0.3'
+
+homepage = 'http://www.open-mpi.org/projects/hwloc/'
+description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction
+(across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including
+NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various
+system attributes such as cache and memory information as well as the locality of I/O devices such as
+network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering
+information about modern local_computing hardware so as to exploit it accordingly and efficiently."""
+
+toolchain = {'name': 'GCC', 'version': '9.3.0'}
+
+source_urls = [
+    'http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/']
+sources = [SOURCE_TAR_GZ]
+
+dependencies = [
+    ('numactl', '2.0.12'),
+]
+
+configopts = "--enable-libnuma=$EBROOTNUMACTL"
+
+moduleclass = 'system'

n/numactl/numactl-2.0.12-GCC-9.3.0.eb

@@ -0,0 +1,36 @@
+# IT4Innovations 2020
+# LK
+
+easyblock = 'ConfigureMake'
+
+name = 'numactl'
+version = '2.0.12'
+
+homepage = 'http://oss.sgi.com/projects/libnuma/'
+
+description = """
+ The numactl program allows you to run your application program on specific
+ cpu's and memory nodes. It does this by supplying a NUMA memory policy to
+ the operating system before running your program. The libnuma library provides
+ convenient ways for you to add NUMA memory policies into your own program.
+"""
+
+toolchain = {'name': 'GCC', 'version': '9.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/numactl/numactl/archive/']
+sources = ['v%(version)s.tar.gz']
+checksums = ['7c3e819c2bdeb883de68bafe88776a01356f7ef565e75ba866c4b49a087c6bdf']
+
+builddependencies = [
+    ('Autotools', '20180311', '', True),
+]
+
+preconfigopts = "./autogen.sh && "
+
+sanity_check_paths = {
+    'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'],
+    'dirs': ['share/man', 'include']
+}
+
+moduleclass = 'tools'

o/OpenMPI/OpenMPI-4.0.4-GCC-9.3.0.eb

@@ -0,0 +1,62 @@
+# IT4Innovations 2020
+# LK
+
+easyblock = 'ConfigureMake'
+
+name = 'OpenMPI'
+version = '4.0.4'
+
+homepage = 'http://www.open-mpi.org/'
+description = """The Open MPI Project is an open source MPI-2 implementation."""
+
+toolchain = {'name': 'GCC', 'version': '9.3.0'}
+
+source_urls = ['https://github.com/open-mpi/ompi/archive/']
+sources = ['v4.0.4.tar.gz']
+
+dependencies = [
+    ('hwloc', '2.0.3'),
+    ('zlib', '1.2.11'),
+    ('UCX', '1.8.1',),
+]
+
+preconfigopts = './autogen.pl && '
+
+configopts = '--enable-shared --enable-mpi-thread-multiple --without-verbs '
+configopts += '--enable-mpirun-prefix-by-default '
+configopts += '--with-hwloc=$EBROOTHWLOC '  # hwloc support
+configopts += '--with-tm=/opt/pbs '  # Enable PBS
+configopts += '--enable-mpi-cxx '  # Enable building the C++ MPI bindings
+configopts += '--with-ucx=$EBROOTUCX '
+
+osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')]
+
+postinstallcmds = [
+    'echo "# By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default." >> %(installdir)s/etc/openmpi-mca-params.conf',
+    'echo "btl_openib_allow_ib = true" >> %(installdir)s/etc/openmpi-mca-params.conf',
+]
+
+libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"]
+sanity_check_paths = {
+    'files': [
+        "bin/%s" %
+        binfile for binfile in [
+            "ompi_info", "opal_wrapper", "orterun"]] + [
+                "lib/lib%s.%s" %
+                (libfile, SHLIB_EXT) for libfile in libs] + [
+                    "include/%s.h" %
+                    x for x in [
+                        "mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], 'dirs': [], }
+
+import os
+if os.environ.get("CLUSTERNAME") in ["BARBORA"]:
+   modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx5_0',
+                'OMPI_MCA_btl_tcp_if_include': '10.33.4.0/24',
+                'OMPI_MCA_orte_base_help_aggregate': '0',
+   }
+else:
+   modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx4_0',
+                'OMPI_MCA_oob_tcp_if_include': '10.0.0.0/8',
+   }
+
+moduleclass = 'mpi'

u/UCX/UCX-1.6.1-GCC-9.3.0.eb

@@ -0,0 +1,41 @@
+# IT4Innovations 2020
+# LK
+
+easyblock = 'ConfigureMake'
+
+name = 'UCX'
+version = '1.6.1'
+
+homepage = 'http://www.openucx.org/'
+description = """Unified Communication X
+An open-source production grade communication framework for data centric
+and high-performance applications
+"""
+
+toolchain = {'name': 'GCC', 'version': '9.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/openucx/ucx/releases/download/v%(version)s']
+sources = ['%(namelower)s-%(version)s.tar.gz']
+
+builddependencies = [
+    ('pkg-config', '0.29.2', '', True),
+]
+
+osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')]
+
+dependencies = [
+    ('numactl', '2.0.12'),
+]
+
+configopts = '--enable-optimizations --enable-cma --enable-mt --with-verbs '
+configopts += '--without-java --disable-doxygen-doc '
+
+buildopts = 'V=1'
+
+sanity_check_paths = {
+    'files': ['bin/ucx_info', 'bin/ucx_perftest', 'bin/ucx_read_profile'],
+    'dirs': ['include', 'lib', 'share']
+}
+
+moduleclass = 'lib'

u/UCX/UCX-1.8.1-GCC-9.3.0.eb

@@ -0,0 +1,41 @@
+# IT4Innovations 2020
+# LK
+
+easyblock = 'ConfigureMake'
+
+name = 'UCX'
+version = '1.8.1'
+
+homepage = 'http://www.openucx.org/'
+description = """Unified Communication X
+An open-source production grade communication framework for data centric
+and high-performance applications
+"""
+
+toolchain = {'name': 'GCC', 'version': '9.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/openucx/ucx/releases/download/v%(version)s']
+sources = ['%(namelower)s-%(version)s.tar.gz']
+
+builddependencies = [
+    ('pkg-config', '0.29.2', '', True),
+]
+
+osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')]
+
+dependencies = [
+    ('numactl', '2.0.12'),
+]
+
+configopts = '--enable-optimizations --enable-cma --enable-mt --with-verbs '
+configopts += '--without-java --disable-doxygen-doc '
+
+buildopts = 'V=1'
+
+sanity_check_paths = {
+    'files': ['bin/ucx_info', 'bin/ucx_perftest', 'bin/ucx_read_profile'],
+    'dirs': ['include', 'lib', 'share']
+}
+
+moduleclass = 'lib'