mirror of
https://code.it4i.cz/sccs/easyconfigs-it4i.git
synced 2025-04-16 03:38:05 +01:00
Merge branch 'it4i-salomon'
This commit is contained in:
Lukáš Krupčík
commit
3d7d71c0f8
23
c/Cube/Cube-4.4.3-gompi-2019.03.eb
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23
c/Cube/Cube-4.4.3-gompi-2019.03.eb
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|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = "Toolchain"
|
||||||
|
|
||||||
|
name = 'Cube'
|
||||||
|
version = '4.4.3'
|
||||||
|
|
||||||
|
homepage = 'http://www.scalasca.org/software/cube-4.x/download.html'
|
||||||
|
description = """Cube, which is used as performance report explorer for Scalasca and
|
||||||
|
Score-P, is a generic tool for displaying a multi-dimensional performance space
|
||||||
|
consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system
|
||||||
|
resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree
|
||||||
|
can be collapsed or expanded to achieve the desired level of granularity."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'gompi', 'version': '2019.03'}
|
||||||
|
|
||||||
|
dependencies = [
|
||||||
|
('CubeW', '4.4.2'),
|
||||||
|
('CubeLib', '4.4.3'),
|
||||||
|
('CubeGUI', '4.4.3'),
|
||||||
|
]
|
||||||
|
|
||||||
|
moduleclass = 'perf'
|
||||||
23
c/Cube/Cube-4.4.3-intel-2017a.eb
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23
c/Cube/Cube-4.4.3-intel-2017a.eb
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@ -0,0 +1,23 @@
|
|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = "Toolchain"
|
||||||
|
|
||||||
|
name = 'Cube'
|
||||||
|
version = '4.4.3'
|
||||||
|
|
||||||
|
homepage = 'http://www.scalasca.org/software/cube-4.x/download.html'
|
||||||
|
description = """Cube, which is used as performance report explorer for Scalasca and
|
||||||
|
Score-P, is a generic tool for displaying a multi-dimensional performance space
|
||||||
|
consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system
|
||||||
|
resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree
|
||||||
|
can be collapsed or expanded to achieve the desired level of granularity."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'intel', 'version': '2017a'}
|
||||||
|
|
||||||
|
dependencies = [
|
||||||
|
('CubeW', '4.4.2'),
|
||||||
|
('CubeLib', '4.4.3'),
|
||||||
|
('CubeGUI', '4.4.3'),
|
||||||
|
]
|
||||||
|
|
||||||
|
moduleclass = 'perf'
|
||||||
23
c/Cube/Cube-4.4.3-intel-2018a.eb
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23
c/Cube/Cube-4.4.3-intel-2018a.eb
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@ -0,0 +1,23 @@
|
|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = "Toolchain"
|
||||||
|
|
||||||
|
name = 'Cube'
|
||||||
|
version = '4.4.3'
|
||||||
|
|
||||||
|
homepage = 'http://www.scalasca.org/software/cube-4.x/download.html'
|
||||||
|
description = """Cube, which is used as performance report explorer for Scalasca and
|
||||||
|
Score-P, is a generic tool for displaying a multi-dimensional performance space
|
||||||
|
consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system
|
||||||
|
resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree
|
||||||
|
can be collapsed or expanded to achieve the desired level of granularity."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'intel', 'version': '2018a'}
|
||||||
|
|
||||||
|
dependencies = [
|
||||||
|
('CubeW', '4.4.2'),
|
||||||
|
('CubeLib', '4.4.3'),
|
||||||
|
('CubeGUI', '4.4.3'),
|
||||||
|
]
|
||||||
|
|
||||||
|
moduleclass = 'perf'
|
||||||
23
c/Cube/Cube-4.4.3-intel-2019.02.eb
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23
c/Cube/Cube-4.4.3-intel-2019.02.eb
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@ -0,0 +1,23 @@
|
|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = "Toolchain"
|
||||||
|
|
||||||
|
name = 'Cube'
|
||||||
|
version = '4.4.3'
|
||||||
|
|
||||||
|
homepage = 'http://www.scalasca.org/software/cube-4.x/download.html'
|
||||||
|
description = """Cube, which is used as performance report explorer for Scalasca and
|
||||||
|
Score-P, is a generic tool for displaying a multi-dimensional performance space
|
||||||
|
consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system
|
||||||
|
resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree
|
||||||
|
can be collapsed or expanded to achieve the desired level of granularity."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'intel', 'version': '2019.02'}
|
||||||
|
|
||||||
|
dependencies = [
|
||||||
|
('CubeW', '4.4.2'),
|
||||||
|
('CubeLib', '4.4.3'),
|
||||||
|
('CubeGUI', '4.4.3'),
|
||||||
|
]
|
||||||
|
|
||||||
|
moduleclass = 'perf'
|
||||||
32
c/CubeGUI/CubeGUI-4.4.3-gompi.2019.03.eb
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32
c/CubeGUI/CubeGUI-4.4.3-gompi.2019.03.eb
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@ -0,0 +1,32 @@
|
|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = 'EB_Score_minus_P'
|
||||||
|
|
||||||
|
name = 'CubeGUI'
|
||||||
|
version = '4.4.3'
|
||||||
|
|
||||||
|
homepage = 'http://www.scalasca.org/software/cube-4.x/download.html'
|
||||||
|
description = """Cube, which is used as performance report explorer for Scalasca and
|
||||||
|
Score-P, is a generic tool for displaying a multi-dimensional performance space
|
||||||
|
consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system
|
||||||
|
resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree
|
||||||
|
can be collapsed or expanded to achieve the desired level of granularity."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'gompi', 'version': '2019.03'}
|
||||||
|
toolchainopts = {'optarch': False}
|
||||||
|
|
||||||
|
source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/4.4/dist/']
|
||||||
|
sources = ['cubegui-%(version)s.tar.gz']
|
||||||
|
|
||||||
|
dependencies = [
|
||||||
|
('Qt', '4.8.7', '', True),
|
||||||
|
('CubeLib', '4.4.3')
|
||||||
|
]
|
||||||
|
|
||||||
|
sanity_check_paths = {
|
||||||
|
'files': [],
|
||||||
|
'dirs': ['bin', 'include', 'lib'],
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
moduleclass = 'perf'
|
||||||
34
c/CubeGUI/CubeGUI-4.4.3-intel-2017a.eb
Normal file
34
c/CubeGUI/CubeGUI-4.4.3-intel-2017a.eb
Normal file
@ -0,0 +1,34 @@
|
|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = 'EB_Score_minus_P'
|
||||||
|
|
||||||
|
name = 'CubeGUI'
|
||||||
|
version = '4.4.3'
|
||||||
|
|
||||||
|
homepage = 'http://www.scalasca.org/software/cube-4.x/download.html'
|
||||||
|
description = """Cube, which is used as performance report explorer for Scalasca and
|
||||||
|
Score-P, is a generic tool for displaying a multi-dimensional performance space
|
||||||
|
consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system
|
||||||
|
resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree
|
||||||
|
can be collapsed or expanded to achieve the desired level of granularity."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'intel', 'version': '2017a'}
|
||||||
|
toolchainopts = {'optarch': False}
|
||||||
|
|
||||||
|
source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/4.4/dist/']
|
||||||
|
sources = ['cubegui-%(version)s.tar.gz']
|
||||||
|
|
||||||
|
dependencies = [
|
||||||
|
('Qt', '4.8.7', '', True),
|
||||||
|
('CubeLib', '4.4.3')
|
||||||
|
]
|
||||||
|
|
||||||
|
configopts = '--enable-platform-mic --with-qt-specs=linux-icc-64 --with-frontend-compiler-suite=intel'
|
||||||
|
|
||||||
|
sanity_check_paths = {
|
||||||
|
'files': [],
|
||||||
|
'dirs': ['bin', 'include', 'lib'],
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
moduleclass = 'perf'
|
||||||
34
c/CubeGUI/CubeGUI-4.4.3-intel-2018a.eb
Normal file
34
c/CubeGUI/CubeGUI-4.4.3-intel-2018a.eb
Normal file
@ -0,0 +1,34 @@
|
|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = 'EB_Score_minus_P'
|
||||||
|
|
||||||
|
name = 'CubeGUI'
|
||||||
|
version = '4.4.3'
|
||||||
|
|
||||||
|
homepage = 'http://www.scalasca.org/software/cube-4.x/download.html'
|
||||||
|
description = """Cube, which is used as performance report explorer for Scalasca and
|
||||||
|
Score-P, is a generic tool for displaying a multi-dimensional performance space
|
||||||
|
consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system
|
||||||
|
resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree
|
||||||
|
can be collapsed or expanded to achieve the desired level of granularity."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'intel', 'version': '2018a'}
|
||||||
|
toolchainopts = {'optarch': False}
|
||||||
|
|
||||||
|
source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/4.4/dist/']
|
||||||
|
sources = ['cubegui-%(version)s.tar.gz']
|
||||||
|
|
||||||
|
dependencies = [
|
||||||
|
('Qt', '4.8.7', '', True),
|
||||||
|
('CubeLib', '4.4.3')
|
||||||
|
]
|
||||||
|
|
||||||
|
configopts = '--enable-platform-mic --with-qt-specs=linux-icc-64 --with-frontend-compiler-suite=intel'
|
||||||
|
|
||||||
|
sanity_check_paths = {
|
||||||
|
'files': [],
|
||||||
|
'dirs': ['bin', 'include', 'lib'],
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
moduleclass = 'perf'
|
||||||
34
c/CubeGUI/CubeGUI-4.4.3-intel-2019.02.eb
Normal file
34
c/CubeGUI/CubeGUI-4.4.3-intel-2019.02.eb
Normal file
@ -0,0 +1,34 @@
|
|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = 'EB_Score_minus_P'
|
||||||
|
|
||||||
|
name = 'CubeGUI'
|
||||||
|
version = '4.4.3'
|
||||||
|
|
||||||
|
homepage = 'http://www.scalasca.org/software/cube-4.x/download.html'
|
||||||
|
description = """Cube, which is used as performance report explorer for Scalasca and
|
||||||
|
Score-P, is a generic tool for displaying a multi-dimensional performance space
|
||||||
|
consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system
|
||||||
|
resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree
|
||||||
|
can be collapsed or expanded to achieve the desired level of granularity."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'intel', 'version': '2019.02'}
|
||||||
|
toolchainopts = {'optarch': False}
|
||||||
|
|
||||||
|
source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/4.4/dist/']
|
||||||
|
sources = ['cubegui-%(version)s.tar.gz']
|
||||||
|
|
||||||
|
dependencies = [
|
||||||
|
('Qt', '4.8.7', '', True),
|
||||||
|
('CubeLib', '4.4.3')
|
||||||
|
]
|
||||||
|
|
||||||
|
configopts = '--enable-platform-mic --with-qt-specs=linux-icc-64 --with-frontend-compiler-suite=intel'
|
||||||
|
|
||||||
|
sanity_check_paths = {
|
||||||
|
'files': [],
|
||||||
|
'dirs': ['bin', 'include', 'lib'],
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
moduleclass = 'perf'
|
||||||
27
c/CubeLib/CubeLib-4.4.3-gompi-2019.03.eb
Normal file
27
c/CubeLib/CubeLib-4.4.3-gompi-2019.03.eb
Normal file
@ -0,0 +1,27 @@
|
|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = 'EB_Score_minus_P'
|
||||||
|
|
||||||
|
name = 'CubeLib'
|
||||||
|
version = '4.4.3'
|
||||||
|
|
||||||
|
homepage = 'http://www.scalasca.org/software/cube-4.x/download.html'
|
||||||
|
description = """Cube, which is used as performance report explorer for Scalasca and
|
||||||
|
Score-P, is a generic tool for displaying a multi-dimensional performance space
|
||||||
|
consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system
|
||||||
|
resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree
|
||||||
|
can be collapsed or expanded to achieve the desired level of granularity."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'gompi', 'version': '2019.03'}
|
||||||
|
toolchainopts = {'optarch': False}
|
||||||
|
|
||||||
|
source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/4.4/dist/']
|
||||||
|
sources = ['cubelib-%(version)s.tar.gz']
|
||||||
|
|
||||||
|
sanity_check_paths = {
|
||||||
|
'files': [],
|
||||||
|
'dirs': ['bin', 'include', 'lib'],
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
moduleclass = 'perf'
|
||||||
29
c/CubeLib/CubeLib-4.4.3-intel-2017a.eb
Normal file
29
c/CubeLib/CubeLib-4.4.3-intel-2017a.eb
Normal file
@ -0,0 +1,29 @@
|
|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = 'EB_Score_minus_P'
|
||||||
|
|
||||||
|
name = 'CubeLib'
|
||||||
|
version = '4.4.3'
|
||||||
|
|
||||||
|
homepage = 'http://www.scalasca.org/software/cube-4.x/download.html'
|
||||||
|
description = """Cube, which is used as performance report explorer for Scalasca and
|
||||||
|
Score-P, is a generic tool for displaying a multi-dimensional performance space
|
||||||
|
consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system
|
||||||
|
resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree
|
||||||
|
can be collapsed or expanded to achieve the desired level of granularity."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'intel', 'version': '2017a'}
|
||||||
|
toolchainopts = {'optarch': False}
|
||||||
|
|
||||||
|
source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/4.4/dist/']
|
||||||
|
sources = ['cubelib-%(version)s.tar.gz']
|
||||||
|
|
||||||
|
configopts = '--enable-platform-mic --with-qt-specs=linux-icc-64 --with-frontend-compiler-suite=intel'
|
||||||
|
|
||||||
|
sanity_check_paths = {
|
||||||
|
'files': [],
|
||||||
|
'dirs': ['bin', 'include', 'lib'],
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
moduleclass = 'perf'
|
||||||
27
c/CubeLib/CubeLib-4.4.3-intel-2018a.eb
Normal file
27
c/CubeLib/CubeLib-4.4.3-intel-2018a.eb
Normal file
@ -0,0 +1,27 @@
|
|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = 'EB_Score_minus_P'
|
||||||
|
|
||||||
|
name = 'CubeLib'
|
||||||
|
version = '4.4.3'
|
||||||
|
|
||||||
|
homepage = 'http://www.scalasca.org/software/cube-4.x/download.html'
|
||||||
|
description = """Cube, which is used as performance report explorer for Scalasca and
|
||||||
|
Score-P, is a generic tool for displaying a multi-dimensional performance space
|
||||||
|
consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system
|
||||||
|
resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree
|
||||||
|
can be collapsed or expanded to achieve the desired level of granularity."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'intel', 'version': '2018a'}
|
||||||
|
toolchainopts = {'optarch': False}
|
||||||
|
|
||||||
|
source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/4.4/dist/']
|
||||||
|
sources = ['cubelib-%(version)s.tar.gz']
|
||||||
|
|
||||||
|
sanity_check_paths = {
|
||||||
|
'files': [],
|
||||||
|
'dirs': ['bin', 'include', 'lib'],
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
moduleclass = 'perf'
|
||||||
27
c/CubeLib/CubeLib-4.4.3-intel-2019.02.eb
Normal file
27
c/CubeLib/CubeLib-4.4.3-intel-2019.02.eb
Normal file
@ -0,0 +1,27 @@
|
|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = 'EB_Score_minus_P'
|
||||||
|
|
||||||
|
name = 'CubeLib'
|
||||||
|
version = '4.4.3'
|
||||||
|
|
||||||
|
homepage = 'http://www.scalasca.org/software/cube-4.x/download.html'
|
||||||
|
description = """Cube, which is used as performance report explorer for Scalasca and
|
||||||
|
Score-P, is a generic tool for displaying a multi-dimensional performance space
|
||||||
|
consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system
|
||||||
|
resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree
|
||||||
|
can be collapsed or expanded to achieve the desired level of granularity."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'intel', 'version': '2019.02'}
|
||||||
|
toolchainopts = {'optarch': False}
|
||||||
|
|
||||||
|
source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/4.4/dist/']
|
||||||
|
sources = ['cubelib-%(version)s.tar.gz']
|
||||||
|
|
||||||
|
sanity_check_paths = {
|
||||||
|
'files': [],
|
||||||
|
'dirs': ['bin', 'include', 'lib'],
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
moduleclass = 'perf'
|
||||||
27
c/CubeW/CubeW-4.4.2-gompi-2019.03.eb
Normal file
27
c/CubeW/CubeW-4.4.2-gompi-2019.03.eb
Normal file
@ -0,0 +1,27 @@
|
|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = 'EB_Score_minus_P'
|
||||||
|
|
||||||
|
name = 'CubeW'
|
||||||
|
version = '4.4.2'
|
||||||
|
|
||||||
|
homepage = 'http://www.scalasca.org/software/cube-4.x/download.html'
|
||||||
|
description = """Cube, which is used as performance report explorer for Scalasca and
|
||||||
|
Score-P, is a generic tool for displaying a multi-dimensional performance space
|
||||||
|
consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system
|
||||||
|
resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree
|
||||||
|
can be collapsed or expanded to achieve the desired level of granularity."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'gompi', 'version': '2019.03'}
|
||||||
|
toolchainopts = {'optarch': False}
|
||||||
|
|
||||||
|
source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/4.4/dist/']
|
||||||
|
sources = ['cubew-%(version)s.tar.gz']
|
||||||
|
|
||||||
|
sanity_check_paths = {
|
||||||
|
'files': [],
|
||||||
|
'dirs': ['bin', 'include', 'lib'],
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
moduleclass = 'perf'
|
||||||
27
c/CubeW/CubeW-4.4.2-intel-2017a.eb
Normal file
27
c/CubeW/CubeW-4.4.2-intel-2017a.eb
Normal file
@ -0,0 +1,27 @@
|
|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = 'EB_Score_minus_P'
|
||||||
|
|
||||||
|
name = 'CubeW'
|
||||||
|
version = '4.4.2'
|
||||||
|
|
||||||
|
homepage = 'http://www.scalasca.org/software/cube-4.x/download.html'
|
||||||
|
description = """Cube, which is used as performance report explorer for Scalasca and
|
||||||
|
Score-P, is a generic tool for displaying a multi-dimensional performance space
|
||||||
|
consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system
|
||||||
|
resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree
|
||||||
|
can be collapsed or expanded to achieve the desired level of granularity."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'intel', 'version': '2017a'}
|
||||||
|
toolchainopts = {'optarch': False}
|
||||||
|
|
||||||
|
source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/4.4/dist/']
|
||||||
|
sources = ['cubew-%(version)s.tar.gz']
|
||||||
|
|
||||||
|
sanity_check_paths = {
|
||||||
|
'files': [],
|
||||||
|
'dirs': ['bin', 'include', 'lib'],
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
moduleclass = 'perf'
|
||||||
27
c/CubeW/CubeW-4.4.2-intel-2018a.eb
Normal file
27
c/CubeW/CubeW-4.4.2-intel-2018a.eb
Normal file
@ -0,0 +1,27 @@
|
|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = 'EB_Score_minus_P'
|
||||||
|
|
||||||
|
name = 'CubeW'
|
||||||
|
version = '4.4.2'
|
||||||
|
|
||||||
|
homepage = 'http://www.scalasca.org/software/cube-4.x/download.html'
|
||||||
|
description = """Cube, which is used as performance report explorer for Scalasca and
|
||||||
|
Score-P, is a generic tool for displaying a multi-dimensional performance space
|
||||||
|
consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system
|
||||||
|
resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree
|
||||||
|
can be collapsed or expanded to achieve the desired level of granularity."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'intel', 'version': '2018a'}
|
||||||
|
toolchainopts = {'optarch': False}
|
||||||
|
|
||||||
|
source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/4.4/dist/']
|
||||||
|
sources = ['cubew-%(version)s.tar.gz']
|
||||||
|
|
||||||
|
sanity_check_paths = {
|
||||||
|
'files': [],
|
||||||
|
'dirs': ['bin', 'include', 'lib'],
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
moduleclass = 'perf'
|
||||||
27
c/CubeW/CubeW-4.4.2-intel-2019.02.eb
Normal file
27
c/CubeW/CubeW-4.4.2-intel-2019.02.eb
Normal file
@ -0,0 +1,27 @@
|
|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = 'EB_Score_minus_P'
|
||||||
|
|
||||||
|
name = 'CubeW'
|
||||||
|
version = '4.4.2'
|
||||||
|
|
||||||
|
homepage = 'http://www.scalasca.org/software/cube-4.x/download.html'
|
||||||
|
description = """Cube, which is used as performance report explorer for Scalasca and
|
||||||
|
Score-P, is a generic tool for displaying a multi-dimensional performance space
|
||||||
|
consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system
|
||||||
|
resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree
|
||||||
|
can be collapsed or expanded to achieve the desired level of granularity."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'intel', 'version': '2019.02'}
|
||||||
|
toolchainopts = {'optarch': False}
|
||||||
|
|
||||||
|
source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/4.4/dist/']
|
||||||
|
sources = ['cubew-%(version)s.tar.gz']
|
||||||
|
|
||||||
|
sanity_check_paths = {
|
||||||
|
'files': [],
|
||||||
|
'dirs': ['bin', 'include', 'lib'],
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
moduleclass = 'perf'
|
||||||
22
g/gompi/gompi-2019.03.eb
Normal file
22
g/gompi/gompi-2019.03.eb
Normal file
@ -0,0 +1,22 @@
|
|||||||
|
# IT4Innovations 2019
|
||||||
|
|
||||||
|
easyblock = "Toolchain"
|
||||||
|
|
||||||
|
name = 'gompi'
|
||||||
|
version = '2019.03'
|
||||||
|
|
||||||
|
homepage = '(none)'
|
||||||
|
description = """GNU Compiler Collection (GCC) based compiler toolchain,
|
||||||
|
including OpenMPI for MPI support."""
|
||||||
|
|
||||||
|
toolchain = {'name': 'dummy', 'version': ''}
|
||||||
|
|
||||||
|
gccver = '6.3.0-2.27'
|
||||||
|
|
||||||
|
# compiler toolchain dependencies
|
||||||
|
dependencies = [
|
||||||
|
('GCC', gccver), # includes both GCC and binutils
|
||||||
|
('OpenMPI', '4.0.0', '', ('GCC', gccver)),
|
||||||
|
]
|
||||||
|
|
||||||
|
moduleclass = 'toolchain'
|
||||||
@ -1,6 +1,6 @@
|
|||||||
# IT4Innovations 2019
|
# IT4Innovations 2019
|
||||||
|
|
||||||
easyblock = "CmdCp"
|
easyblock = "Tarball"
|
||||||
|
|
||||||
name = 'Qualimap'
|
name = 'Qualimap'
|
||||||
version = '2.2.1'
|
version = '2.2.1'
|
||||||
@ -13,21 +13,18 @@ description = """Qualimap 2 is a platform-independent application written in
|
|||||||
|
|
||||||
toolchain = {'name': 'intel', 'version': '2017a'}
|
toolchain = {'name': 'intel', 'version': '2017a'}
|
||||||
|
|
||||||
sources = ['qualimap_v2.2.1.zip']
|
sources = ['qualimap_v%(version)s.zip']
|
||||||
source_urls = ['https://bitbucket.org/kokonech/qualimap/downloads']
|
source_urls = ['https://bitbucket.org/kokonech/qualimap/downloads']
|
||||||
|
|
||||||
dependencies = [
|
dependencies = [
|
||||||
('Java', '1.8.0_121', '', True),
|
|
||||||
('R', '3.5.3'),
|
('R', '3.5.3'),
|
||||||
]
|
]
|
||||||
|
|
||||||
cmds_map = [('.*', "./compile.sh")]
|
modextrapaths = {"PATH": '.'}
|
||||||
|
|
||||||
files_to_copy = [(['output/bazel'], 'bin')]
|
|
||||||
|
|
||||||
sanity_check_paths = {
|
sanity_check_paths = {
|
||||||
'files': ['bin/bazel'],
|
'files': ['qualimap'],
|
||||||
'dirs': [],
|
'dirs': ['lib', 'scripts', 'species'],
|
||||||
}
|
}
|
||||||
|
|
||||||
moduleclass = 'bio'
|
moduleclass = 'bio'
|
||||||
@ -1,2 +0,0 @@
|
|||||||
# disable Intel C++ compiler (icpc) warning/error #308, to avoid 'member "std::complex<double>::_M_value" is inaccessible'
|
|
||||||
PKG_CXXFLAGS = -wd308
|
|
||||||
@ -707,9 +707,7 @@ exts_list = [
|
|||||||
('cgdsr', '1.2.10', {
|
('cgdsr', '1.2.10', {
|
||||||
'checksums': ['43bc02fb33c371464f9407d5e5e6419527e9360e3e394343862cca0aebe1d0f7'],
|
'checksums': ['43bc02fb33c371464f9407d5e5e6419527e9360e3e394343862cca0aebe1d0f7'],
|
||||||
}),
|
}),
|
||||||
('R.utils', '2.6.0', {
|
('R.utils', '2.8.0'),
|
||||||
'checksums': ['5d64993d1209b512a4e97f2edecdbc185f4a369ee5fa2e334ed2cf017486470e'],
|
|
||||||
}),
|
|
||||||
('R.matlab', '3.6.1', {
|
('R.matlab', '3.6.1', {
|
||||||
'checksums': ['1032579fd152d419eaf1f69bf6035fba7a71ef26e76136c48a6fc619e3887804'],
|
'checksums': ['1032579fd152d419eaf1f69bf6035fba7a71ef26e76136c48a6fc619e3887804'],
|
||||||
}),
|
}),
|
||||||
@ -2091,7 +2089,30 @@ exts_list = [
|
|||||||
('rtracklayer', '1.42.2'),
|
('rtracklayer', '1.42.2'),
|
||||||
('BSgenome', '1.50.0'),
|
('BSgenome', '1.50.0'),
|
||||||
('gsmoothr', '0.1.7'),
|
('gsmoothr', '0.1.7'),
|
||||||
('limma', '3.14.4'),
|
('limma', '3.38.3'),
|
||||||
|
('edgeR', '3.24.3'),
|
||||||
|
('DNAcopy', '1.56.0'),
|
||||||
|
('AnnotationDbi', '1.44.0'),
|
||||||
|
('annotate', '1.60.1'),
|
||||||
|
('genefilter', '1.64.0'),
|
||||||
|
('affyio', '1.52.0'),
|
||||||
|
('BiocManager', '1.30.4'),
|
||||||
|
('preprocessCore', '1.44.0'),
|
||||||
|
('affy', '1.60.0'),
|
||||||
|
('vsn', '3.50.0'),
|
||||||
|
('Ringo', '1.46.0'),
|
||||||
|
('R.filesets', '2.13.0'),
|
||||||
|
('R.devices', '2.16.0'),
|
||||||
|
('aroma.light', '3.12.0'),
|
||||||
|
('PSCBS', '0.64.0'),
|
||||||
|
('aroma.core', '3.1.3'),
|
||||||
|
('R.huge', '0.9.0'),
|
||||||
|
('aroma.apd', '0.6.0'),
|
||||||
|
('aroma.affymetrix', '3.1.1'),
|
||||||
|
('truncnorm', '1.0-8'),
|
||||||
|
('Rsolnp', '1.16'),
|
||||||
|
('Repitools', '1.28.0'),
|
||||||
|
('rtracklayer', '1.42.2'),
|
||||||
]
|
]
|
||||||
|
|
||||||
moduleclass = 'lang'
|
moduleclass = 'lang'
|
||||||
|
|||||||
@ -1,540 +0,0 @@
|
|||||||
# IT4Innovations 2019
|
|
||||||
|
|
||||||
name = 'R'
|
|
||||||
version = '3.5.3'
|
|
||||||
|
|
||||||
homepage = 'http://www.r-project.org/'
|
|
||||||
description = """R is a free software environment for statistical computing and graphics."""
|
|
||||||
|
|
||||||
toolchain = {'name': 'intel', 'version': '2017a'}
|
|
||||||
|
|
||||||
sources = [SOURCE_TAR_GZ]
|
|
||||||
source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s']
|
|
||||||
|
|
||||||
preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"'
|
|
||||||
configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=yes --enable-R-shlib"
|
|
||||||
# Actually use Tcl/Tk
|
|
||||||
configopts += ' --with-tcl-config=$EBROOTTCL/lib/tclConfig.sh --with-tk-config=$EBROOTTK/lib/tkConfig.sh '
|
|
||||||
# Enable graphics capabilities for plotting.
|
|
||||||
configopts += " --with-cairo --with-libpng --with-jpeglib --with-libtiff"
|
|
||||||
# some recommended packages may fail in a parallel build (e.g. Matrix),
|
|
||||||
# and we're installing them anyway below
|
|
||||||
configopts += " --with-recommended-packages=no"
|
|
||||||
|
|
||||||
dependencies = [
|
|
||||||
('cairo', '1.14.8', '', True),
|
|
||||||
('libreadline', '7.0', '', True),
|
|
||||||
('ncurses', '6.0', '', True),
|
|
||||||
('bzip2', '1.0.6', '', True),
|
|
||||||
('XZ', '5.2.3', '', True),
|
|
||||||
('zlib', '1.2.11', '', True),
|
|
||||||
('SQLite', '3.17.0', '', True),
|
|
||||||
('PCRE', '8.40', '', True),
|
|
||||||
('libpng', '1.6.29', '', True), # for plotting in R
|
|
||||||
('libjpeg-turbo', '1.5.1', '', True), # for plottting in R
|
|
||||||
('LibTIFF', '4.0.7', '', True),
|
|
||||||
# Java bindings are built if Java is found, might as well provide it
|
|
||||||
('Java', '1.8.0_144', '', True),
|
|
||||||
('Tcl', '8.6.6', '', True), # for tcltk
|
|
||||||
('Tk', '8.6.6', '', True), # for tcltk
|
|
||||||
('cURL', '7.53.1', '', True), # for RCurl
|
|
||||||
('libxml2', '2.9.4', '', True), # for XML
|
|
||||||
('GDAL', '2.1.3', '-Python-2.7.13', True), # for rgdal
|
|
||||||
('PROJ', '4.9.3'), # for rgdal
|
|
||||||
('GMP', '6.1.2', '', True), # for igraph
|
|
||||||
('NLopt', '2.4.2'), # for nloptr
|
|
||||||
('FFTW', '3.3.6'), # for fftw
|
|
||||||
('libsndfile', '1.0.28'), # for seewave
|
|
||||||
# OS dependency should be preferred if the os version is more recent then this version,
|
|
||||||
# it's nice to have an up to date openssl for security reasons
|
|
||||||
# ('OpenSSL', '1.0.2h'),
|
|
||||||
]
|
|
||||||
|
|
||||||
osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')]
|
|
||||||
|
|
||||||
name_tmpl = '%(name)s_%(version)s.tar.gz'
|
|
||||||
ext_options = {
|
|
||||||
'source_urls': [
|
|
||||||
# package archive
|
|
||||||
'http://cran.r-project.org/src/contrib/Archive/%(name)s',
|
|
||||||
'http://cran.r-project.org/src/contrib/', # current version of packages
|
|
||||||
# mirror alternative for current packages
|
|
||||||
'http://cran.freestatistics.org/src/contrib',
|
|
||||||
'http://www.bioconductor.org/packages/release/bioc/src/contrib/'
|
|
||||||
],
|
|
||||||
'source_tmpl': name_tmpl,
|
|
||||||
}
|
|
||||||
|
|
||||||
# !! order of packages is important !!
|
|
||||||
# packages updated on May 11th 2017
|
|
||||||
exts_list = [
|
|
||||||
# default libraries, only here to sanity check their presence
|
|
||||||
'base',
|
|
||||||
'datasets',
|
|
||||||
'graphics',
|
|
||||||
'grDevices',
|
|
||||||
'grid',
|
|
||||||
'methods',
|
|
||||||
'splines',
|
|
||||||
'stats',
|
|
||||||
'stats4',
|
|
||||||
'tools',
|
|
||||||
'utils',
|
|
||||||
# non-standard libraries, should be specified with fixed versions!
|
|
||||||
('Rmpi', '0.6-6', ext_options),
|
|
||||||
('abind', '1.4-5', ext_options),
|
|
||||||
('magic', '1.5-6', ext_options),
|
|
||||||
('geometry', '0.3-6', dict(ext_options.items() +
|
|
||||||
[('patches', ['geometry-0.3-4-icc.patch'])])),
|
|
||||||
('bit', '1.1-12', ext_options),
|
|
||||||
('filehash', '2.4-1', ext_options),
|
|
||||||
('ff', '2.2-13', ext_options),
|
|
||||||
('bnlearn', '4.1.1', ext_options),
|
|
||||||
('bootstrap', '2017.2', ext_options),
|
|
||||||
('combinat', '0.0-8', ext_options),
|
|
||||||
('deal', '1.2-37', ext_options),
|
|
||||||
('fdrtool', '1.2.15', ext_options),
|
|
||||||
('formatR', '1.5', ext_options),
|
|
||||||
('gtools', '3.5.0', ext_options),
|
|
||||||
('gdata', '2.17.0', ext_options),
|
|
||||||
('GSA', '1.03', ext_options),
|
|
||||||
('highr', '0.6', ext_options),
|
|
||||||
('infotheo', '1.2.0', ext_options),
|
|
||||||
('lars', '1.2', ext_options),
|
|
||||||
('lazy', '1.2-15', ext_options),
|
|
||||||
('kernlab', '0.9-25', ext_options),
|
|
||||||
('mime', '0.5', ext_options),
|
|
||||||
('markdown', '0.8', ext_options),
|
|
||||||
('mlbench', '2.1-1', ext_options),
|
|
||||||
('NLP', '0.1-10', ext_options),
|
|
||||||
('mclust', '5.3', ext_options),
|
|
||||||
('RANN', '2.5', ext_options),
|
|
||||||
('rmeta', '2.16', ext_options),
|
|
||||||
('segmented', '0.5-1.4', ext_options),
|
|
||||||
('som', '0.3-5.1', ext_options),
|
|
||||||
('SuppDists', '1.1-9.4', ext_options),
|
|
||||||
('stabledist', '0.7-1', ext_options),
|
|
||||||
('survivalROC', '1.0.3', ext_options),
|
|
||||||
('pspline', '1.0-17', ext_options),
|
|
||||||
('timeDate', '3012.100', ext_options),
|
|
||||||
('longmemo', '1.0-0', ext_options),
|
|
||||||
('ADGofTest', '0.3', ext_options),
|
|
||||||
('ade4', '1.7-6', ext_options),
|
|
||||||
('AlgDesign', '1.1-7.3', ext_options),
|
|
||||||
('base64enc', '0.1-3', ext_options),
|
|
||||||
('BH', '1.62.0-1', ext_options),
|
|
||||||
('brew', '1.0-6', ext_options),
|
|
||||||
('Brobdingnag', '1.2-4', ext_options),
|
|
||||||
('corpcor', '1.6.9', ext_options),
|
|
||||||
('longitudinal', '1.1.12', ext_options),
|
|
||||||
('backports', '1.0.5', ext_options),
|
|
||||||
('checkmate', '1.8.2', ext_options),
|
|
||||||
('Rcpp', '0.12.10', ext_options),
|
|
||||||
('cubature', '1.3-8', ext_options),
|
|
||||||
('DEoptimR', '1.0-8', ext_options),
|
|
||||||
('digest', '0.6.12', ext_options),
|
|
||||||
('fastmatch', '1.1-0', ext_options),
|
|
||||||
('ffbase', '0.12.3', ext_options),
|
|
||||||
('iterators', '1.0.8', ext_options),
|
|
||||||
('maps', '3.1.1', ext_options),
|
|
||||||
('nnls', '1.4', ext_options),
|
|
||||||
('sendmailR', '1.2-1', ext_options),
|
|
||||||
('spam', '1.4-0', ext_options),
|
|
||||||
('subplex', '1.2-2', ext_options),
|
|
||||||
('stringi', '1.1.5', ext_options),
|
|
||||||
('magrittr', '1.5', ext_options),
|
|
||||||
('stringr', '1.2.0', ext_options),
|
|
||||||
('evaluate', '0.10', ext_options),
|
|
||||||
('logspline', '2.1.9', ext_options),
|
|
||||||
('ncbit', '2013.03.29', ext_options),
|
|
||||||
('permute', '0.9-4', ext_options),
|
|
||||||
('plotrix', '3.6-5', ext_options),
|
|
||||||
('randomForest', '4.6-12', ext_options),
|
|
||||||
('scatterplot3d', '0.3-40', ext_options),
|
|
||||||
('SparseM', '1.77', ext_options),
|
|
||||||
('tripack', '1.3-8', ext_options),
|
|
||||||
('irace', '2.3', ext_options),
|
|
||||||
('rJava', '0.9-8', ext_options),
|
|
||||||
('lattice', '0.20-35', ext_options),
|
|
||||||
('RColorBrewer', '1.1-2', ext_options),
|
|
||||||
('latticeExtra', '0.6-28', ext_options),
|
|
||||||
('Matrix', '1.2-10', ext_options),
|
|
||||||
('png', '0.1-7', ext_options),
|
|
||||||
('RcppArmadillo', '0.7.800.2.0', ext_options),
|
|
||||||
('plyr', '1.8.4', ext_options),
|
|
||||||
('pROC', '1.9.1', ext_options),
|
|
||||||
('quadprog', '1.5-5', ext_options),
|
|
||||||
('BB', '2014.10-1', ext_options),
|
|
||||||
('BBmisc', '1.11', ext_options),
|
|
||||||
('fail', '1.3', ext_options),
|
|
||||||
('rlecuyer', '0.3-4', ext_options),
|
|
||||||
('snow', '0.4-2', ext_options),
|
|
||||||
('MASS', '7.3-47', ext_options),
|
|
||||||
('tree', '1.0-37', ext_options),
|
|
||||||
('pls', '2.6-0', ext_options),
|
|
||||||
('class', '7.3-14', ext_options),
|
|
||||||
('e1071', '1.6-8', ext_options),
|
|
||||||
('nnet', '7.3-12', ext_options),
|
|
||||||
('nlme', '3.1-131', ext_options),
|
|
||||||
('minqa', '1.2.4', ext_options),
|
|
||||||
('RcppEigen', '0.3.3.3.0', ext_options),
|
|
||||||
('MatrixModels', '0.4-1', ext_options),
|
|
||||||
('quantreg', '5.33', ext_options),
|
|
||||||
('mgcv', '1.8-17', ext_options),
|
|
||||||
('colorspace', '1.3-2', ext_options),
|
|
||||||
('robustbase', '0.92-7', ext_options),
|
|
||||||
('sp', '1.2-4', ext_options),
|
|
||||||
('zoo', '1.8-0', ext_options),
|
|
||||||
('lmtest', '0.9-35', ext_options),
|
|
||||||
('vcd', '1.4-3', ext_options),
|
|
||||||
('snowfall', '1.84-6.1', ext_options),
|
|
||||||
('rpart', '4.1-11', ext_options),
|
|
||||||
('survival', '2.41-3', ext_options),
|
|
||||||
('mice', '2.30', ext_options),
|
|
||||||
('urca', '1.3-0', ext_options),
|
|
||||||
('fracdiff', '1.4-2', ext_options),
|
|
||||||
('logistf', '1.22', ext_options),
|
|
||||||
('akima', '0.6-2', ext_options),
|
|
||||||
('bitops', '1.0-6', ext_options),
|
|
||||||
('boot', '1.3-19', ext_options),
|
|
||||||
('mixtools', '1.1.0', ext_options),
|
|
||||||
('cluster', '2.0.6', ext_options),
|
|
||||||
('gclus', '1.3.1', ext_options),
|
|
||||||
('coda', '0.19-1', ext_options),
|
|
||||||
('codetools', '0.2-15', ext_options),
|
|
||||||
('foreach', '1.4.3', ext_options),
|
|
||||||
('doMC', '1.3.4', ext_options),
|
|
||||||
('DBI', '0.6-1', ext_options),
|
|
||||||
('foreign', '0.8-68', ext_options),
|
|
||||||
('gam', '1.14-4', ext_options),
|
|
||||||
('gamlss.data', '5.0-0', ext_options),
|
|
||||||
('gamlss.dist', '5.0-0', ext_options),
|
|
||||||
('hwriter', '1.3.2', ext_options),
|
|
||||||
('KernSmooth', '2.23-15', ext_options),
|
|
||||||
('xts', '0.9-7', ext_options),
|
|
||||||
('TTR', '0.23-1', ext_options),
|
|
||||||
('quantmod', '0.4-8', ext_options),
|
|
||||||
('mnormt', '1.5-5', ext_options),
|
|
||||||
('mvtnorm', '1.0-6', ext_options),
|
|
||||||
('pcaPP', '1.9-61', ext_options),
|
|
||||||
('numDeriv', '2016.8-1', ext_options),
|
|
||||||
('lava', '1.5', ext_options),
|
|
||||||
('prodlim', '1.6.1', ext_options),
|
|
||||||
('pscl', '1.4.9', ext_options),
|
|
||||||
('memoise', '1.1.0', ext_options),
|
|
||||||
('plogr', '0.1-1', ext_options),
|
|
||||||
('RSQLite', '1.1-2', ext_options),
|
|
||||||
('BatchJobs', '1.6', ext_options),
|
|
||||||
('sandwich', '2.3-4', ext_options),
|
|
||||||
('sfsmisc', '1.1-0', ext_options),
|
|
||||||
('spatial', '7.3-11', ext_options),
|
|
||||||
('VGAM', '1.0-3', ext_options),
|
|
||||||
('waveslim', '1.7.5', ext_options),
|
|
||||||
('xtable', '1.8-2', ext_options),
|
|
||||||
('profileModel', '0.5-9', ext_options),
|
|
||||||
('brglm', '0.5-9', ext_options),
|
|
||||||
('deSolve', '1.14', ext_options),
|
|
||||||
('tseriesChaos', '0.1-13', ext_options),
|
|
||||||
('tseries', '0.10-40', ext_options),
|
|
||||||
('fastICA', '1.2-0', ext_options),
|
|
||||||
('R.methodsS3', '1.7.1', ext_options),
|
|
||||||
('R.oo', '1.21.0', ext_options),
|
|
||||||
('cgdsr', '1.2.6', ext_options),
|
|
||||||
('R.utils', '2.5.0', ext_options),
|
|
||||||
('R.matlab', '3.6.1', ext_options),
|
|
||||||
('gbm', '2.1.3', ext_options),
|
|
||||||
('dichromat', '2.0-0', ext_options),
|
|
||||||
('Formula', '1.2-1', ext_options),
|
|
||||||
('acepack', '1.4.1', ext_options),
|
|
||||||
('reshape2', '1.4.2', ext_options),
|
|
||||||
('gtable', '0.2.0', ext_options),
|
|
||||||
('munsell', '0.4.3', ext_options),
|
|
||||||
('labeling', '0.3', ext_options),
|
|
||||||
('scales', '0.4.1', ext_options),
|
|
||||||
('proto', '1.0.0', ext_options),
|
|
||||||
('lazyeval', '0.2.0', ext_options),
|
|
||||||
('assertthat', '0.2.0', ext_options),
|
|
||||||
('tibble', '1.3.0', ext_options),
|
|
||||||
('ggplot2', '2.2.1', ext_options),
|
|
||||||
('gridExtra', '2.2.1', ext_options),
|
|
||||||
('chron', '2.3-50', ext_options),
|
|
||||||
('data.table', '1.10.4', ext_options),
|
|
||||||
('viridisLite', '0.2.0', ext_options),
|
|
||||||
('viridis', '0.4.0', ext_options),
|
|
||||||
('yaml', '2.1.14', ext_options),
|
|
||||||
('jsonlite', '1.4', ext_options),
|
|
||||||
('htmltools', '0.3.6', ext_options),
|
|
||||||
('htmlwidgets', '0.8', ext_options),
|
|
||||||
('knitr', '1.16', ext_options),
|
|
||||||
('htmlTable', '1.9', ext_options),
|
|
||||||
('Hmisc', '4.0-3', ext_options),
|
|
||||||
('fastcluster', '1.1.22', ext_options),
|
|
||||||
('registry', '0.3', ext_options),
|
|
||||||
('pkgmaker', '0.22', ext_options),
|
|
||||||
('rngtools', '1.2.4', ext_options),
|
|
||||||
('doParallel', '1.0.10', ext_options),
|
|
||||||
('gridBase', '0.4-7', ext_options),
|
|
||||||
('NMF', '0.20.6', ext_options),
|
|
||||||
('irlba', '2.1.2', ext_options),
|
|
||||||
('igraph', '1.0.1', ext_options),
|
|
||||||
('GeneNet', '1.2.13', ext_options),
|
|
||||||
('ape', '4.1', ext_options),
|
|
||||||
('RJSONIO', '1.3-0', ext_options),
|
|
||||||
('caTools', '1.17.1', ext_options),
|
|
||||||
('gplots', '3.0.1', ext_options),
|
|
||||||
('ROCR', '1.0-7', ext_options),
|
|
||||||
('httpuv', '1.3.3', ext_options),
|
|
||||||
('R6', '2.2.1', ext_options),
|
|
||||||
('rjson', '0.2.15', ext_options),
|
|
||||||
('sourcetools', '0.1.6', ext_options),
|
|
||||||
('shiny', '1.0.3', ext_options),
|
|
||||||
('seqinr', '3.3-6', ext_options),
|
|
||||||
('LearnBayes', '2.15', ext_options),
|
|
||||||
('deldir', '0.1-14', ext_options),
|
|
||||||
('gmodels', '2.16.2', ext_options),
|
|
||||||
('expm', '0.999-2', ext_options),
|
|
||||||
('spdep', '0.6-13', ext_options),
|
|
||||||
('dplyr', '0.5.0', ext_options),
|
|
||||||
('vegan', '2.4-3', ext_options),
|
|
||||||
('adegenet', '2.0.1', ext_options),
|
|
||||||
('prettyunits', '1.0.2', ext_options),
|
|
||||||
('progress', '1.1.2', ext_options),
|
|
||||||
('rncl', '0.8.2', ext_options),
|
|
||||||
('XML', '3.98-1.7', ext_options),
|
|
||||||
('crayon', '1.3.2', ext_options),
|
|
||||||
('praise', '1.0.0', ext_options),
|
|
||||||
('testthat', '1.0.2', ext_options),
|
|
||||||
('rprojroot', '1.2', ext_options),
|
|
||||||
('rmarkdown', '1.5', ext_options),
|
|
||||||
('curl', '2.6', ext_options),
|
|
||||||
('openssl', '0.9.6', ext_options),
|
|
||||||
('httr', '1.2.1', ext_options),
|
|
||||||
('reshape', '0.8.6', ext_options),
|
|
||||||
('xml2', '1.1.1', ext_options),
|
|
||||||
('bold', '0.4.0', ext_options),
|
|
||||||
('triebeard', '0.3.0', ext_options),
|
|
||||||
('urltools', '1.6.0', ext_options),
|
|
||||||
('httpcode', '0.2.0', ext_options),
|
|
||||||
('crul', '0.3.6', ext_options),
|
|
||||||
('rredlist', '0.3.0', ext_options),
|
|
||||||
('rentrez', '1.0.4', ext_options),
|
|
||||||
('rotl', '3.0.3', ext_options),
|
|
||||||
('solrium', '0.4.0', ext_options),
|
|
||||||
('ritis', '0.5.4', ext_options),
|
|
||||||
('worrms', '0.1.0', ext_options),
|
|
||||||
('natserv', '0.1.4', ext_options),
|
|
||||||
('taxize', '0.8.4', ext_options),
|
|
||||||
('tidyr', '0.6.2', ext_options),
|
|
||||||
('uuid', '0.1-2', ext_options),
|
|
||||||
('RNeXML', '2.0.7', ext_options),
|
|
||||||
('phylobase', '0.8.4', ext_options),
|
|
||||||
('adephylo', '1.1-10', ext_options),
|
|
||||||
('animation', '2.5', ext_options),
|
|
||||||
('bigmemory.sri', '0.1.3', ext_options),
|
|
||||||
('bigmemory', '4.5.19', dict(ext_options.items() + \
|
|
||||||
[('patches', ['bigmemory-4.5.19_icpc-wd308.patch'])])),
|
|
||||||
('calibrate', '1.7.2', ext_options),
|
|
||||||
('clusterGeneration', '1.3.4', ext_options),
|
|
||||||
('raster', '2.5-8', ext_options),
|
|
||||||
('dismo', '1.1-4', ext_options),
|
|
||||||
('extrafontdb', '1.0', ext_options),
|
|
||||||
('Rttf2pt1', '1.3.4', ext_options),
|
|
||||||
('extrafont', '0.17', ext_options),
|
|
||||||
('fields', '8.10', ext_options),
|
|
||||||
('shapefiles', '0.7', ext_options),
|
|
||||||
('fossil', '0.3.7', ext_options),
|
|
||||||
('geiger', '2.0.6', ext_options),
|
|
||||||
('glmnet', '2.0-10', ext_options),
|
|
||||||
('rgl', '0.98.1', ext_options),
|
|
||||||
('labdsv', '1.8-0', ext_options),
|
|
||||||
('stabs', '0.6-2', ext_options),
|
|
||||||
('modeltools', '0.2-21', ext_options),
|
|
||||||
('strucchange', '1.5-1', ext_options),
|
|
||||||
('TH.data', '1.0-8', ext_options),
|
|
||||||
('multcomp', '1.4-6', ext_options),
|
|
||||||
('coin', '1.1-3', ext_options),
|
|
||||||
('party', '1.2-3', ext_options),
|
|
||||||
('mboost', '2.8-0', ext_options),
|
|
||||||
('msm', '1.6.4', ext_options),
|
|
||||||
('nor1mix', '1.2-2', ext_options),
|
|
||||||
('np', '0.60-3', ext_options),
|
|
||||||
('polynom', '1.3-9', ext_options),
|
|
||||||
('polspline', '1.1.12', ext_options),
|
|
||||||
('rms', '5.1-1', ext_options),
|
|
||||||
('RWekajars', '3.9.1-3', ext_options),
|
|
||||||
('RWeka', '0.4-34', ext_options),
|
|
||||||
('slam', '0.1-40', ext_options),
|
|
||||||
('tm', '0.7-1', ext_options),
|
|
||||||
('TraMineR', '2.0-5', ext_options),
|
|
||||||
('chemometrics', '1.4.2', ext_options),
|
|
||||||
('FNN', '1.1', ext_options),
|
|
||||||
('ipred', '0.9-6', ext_options),
|
|
||||||
('statmod', '1.4.29', ext_options),
|
|
||||||
('miscTools', '0.6-22', ext_options),
|
|
||||||
('maxLik', '1.3-4', ext_options),
|
|
||||||
('mlogit', '0.2-4', ext_options),
|
|
||||||
('getopt', '1.20.0', ext_options),
|
|
||||||
('gsalib', '2.1', ext_options),
|
|
||||||
('optparse', '1.3.2', ext_options),
|
|
||||||
('klaR', '0.6-12', ext_options),
|
|
||||||
('neuRosim', '0.2-12', ext_options),
|
|
||||||
('locfit', '1.5-9.1', ext_options),
|
|
||||||
('GGally', '1.3.0', ext_options),
|
|
||||||
('beanplot', '1.2', ext_options),
|
|
||||||
('clValid', '0.6-6', ext_options),
|
|
||||||
('matrixStats', '0.52.2', ext_options),
|
|
||||||
('DiscriMiner', '0.1-29', ext_options),
|
|
||||||
('ellipse', '0.3-8', ext_options),
|
|
||||||
('leaps', '3.0', ext_options),
|
|
||||||
('nloptr', '1.0.4', ext_options),
|
|
||||||
('lme4', '1.1-13', ext_options),
|
|
||||||
('pbkrtest', '0.4-7', ext_options),
|
|
||||||
('car', '2.1-4', ext_options),
|
|
||||||
('flashClust', '1.01-2', ext_options),
|
|
||||||
('FactoMineR', '1.35', ext_options),
|
|
||||||
('flexclust', '1.3-4', ext_options),
|
|
||||||
('flexmix', '2.3-14', ext_options),
|
|
||||||
('prabclus', '2.2-6', ext_options),
|
|
||||||
('diptest', '0.75-7', ext_options),
|
|
||||||
('trimcluster', '0.1-2', ext_options),
|
|
||||||
('fpc', '2.1-10', ext_options),
|
|
||||||
('BiasedUrn', '1.07', ext_options),
|
|
||||||
('TeachingDemos', '2.10', ext_options),
|
|
||||||
('kohonen', '3.0.2', dict(ext_options.items() + \
|
|
||||||
[('patches', ['kohonen-3.0.2_icpc-wd308.patch'])])),
|
|
||||||
('base64', '2.0', ext_options),
|
|
||||||
('doRNG', '1.6.6', ext_options),
|
|
||||||
('nleqslv', '3.2', ext_options),
|
|
||||||
('Deriv', '3.8.0', ext_options),
|
|
||||||
('RGCCA', '2.1.2', ext_options),
|
|
||||||
('pheatmap', '1.0.8', ext_options),
|
|
||||||
('openxlsx', '4.0.17', ext_options),
|
|
||||||
('pvclust', '2.0-0', ext_options),
|
|
||||||
('RCircos', '1.2.0', ext_options),
|
|
||||||
('lambda.r', '1.1.9', ext_options),
|
|
||||||
('futile.options', '1.0.0', ext_options),
|
|
||||||
('futile.logger', '1.4.3', ext_options),
|
|
||||||
('VennDiagram', '1.6.17', ext_options),
|
|
||||||
('xlsxjars', '0.6.1', ext_options),
|
|
||||||
('xlsx', '0.5.7', ext_options),
|
|
||||||
('forecast', '8.0', dict(ext_options.items() + \
|
|
||||||
[('patches', ['forecast-6.1_icpc-wd308.patch'])])),
|
|
||||||
('fma', '2.3', ext_options),
|
|
||||||
('expsmooth', '2.3', ext_options),
|
|
||||||
('fpp', '0.5', ext_options),
|
|
||||||
('maptools', '0.9-2', ext_options),
|
|
||||||
('tensor', '1.5', ext_options),
|
|
||||||
('polyclip', '1.6-1', ext_options),
|
|
||||||
('goftest', '1.1-1', ext_options),
|
|
||||||
('spatstat.utils', '1.6-0', ext_options),
|
|
||||||
('spatstat', '1.51-0', ext_options),
|
|
||||||
('rgdal', '1.2-7', ext_options),
|
|
||||||
('gdalUtils', '2.0.1.7', ext_options),
|
|
||||||
('pracma', '2.0.4', ext_options),
|
|
||||||
('RCurl', '1.95-4.8', ext_options),
|
|
||||||
('bio3d', '2.3-1', ext_options),
|
|
||||||
('AUC', '0.3.0', ext_options),
|
|
||||||
('interpretR', '0.2.4', ext_options),
|
|
||||||
('cvAUC', '1.1.0', ext_options),
|
|
||||||
('SuperLearner', '2.0-21', ext_options),
|
|
||||||
('lpSolve', '5.6.13', ext_options),
|
|
||||||
('mediation', '4.4.5', ext_options),
|
|
||||||
('ModelMetrics', '1.1.0', ext_options),
|
|
||||||
('caret', '6.0-76', ext_options),
|
|
||||||
('adabag', '4.1', ext_options),
|
|
||||||
('parallelMap', '1.3', ext_options),
|
|
||||||
('ParamHelpers', '1.10', ext_options),
|
|
||||||
('ggvis', '0.4.3', ext_options),
|
|
||||||
('mlr', '2.11', ext_options),
|
|
||||||
('unbalanced', '2.0', ext_options),
|
|
||||||
('RSNNS', '0.4-9', ext_options),
|
|
||||||
('abc.data', '1.0', ext_options),
|
|
||||||
('abc', '2.1', ext_options),
|
|
||||||
('lhs', '0.14', ext_options),
|
|
||||||
('tensorA', '0.36', ext_options),
|
|
||||||
('EasyABC', '1.5', ext_options),
|
|
||||||
('shape', '1.4.2', ext_options),
|
|
||||||
('whisker', '0.3-2', ext_options),
|
|
||||||
('rstudioapi', '0.6', ext_options),
|
|
||||||
('commonmark', '1.2', ext_options),
|
|
||||||
('desc', '1.1.0', ext_options),
|
|
||||||
('roxygen2', '6.0.1', ext_options),
|
|
||||||
('git2r', '0.18.0', ext_options),
|
|
||||||
('rversions', '1.0.3', ext_options),
|
|
||||||
('withr', '1.0.2', ext_options),
|
|
||||||
('devtools', '1.13.0', ext_options),
|
|
||||||
('Rook', '1.1-1', ext_options),
|
|
||||||
('Cairo', '1.5-9', dict(ext_options.items() +
|
|
||||||
[('patches', ['Cairo-1.5-9.patch'])])),
|
|
||||||
('RMTstat', '0.3', ext_options),
|
|
||||||
('Lmoments', '1.2-3', ext_options),
|
|
||||||
('distillery', '1.0-2', ext_options),
|
|
||||||
('extRemes', '2.0-8', ext_options),
|
|
||||||
('pixmap', '0.4-11', ext_options),
|
|
||||||
('tkrplot', '0.0-23', ext_options),
|
|
||||||
('misc3d', '0.8-4', ext_options),
|
|
||||||
('multicool', '0.1-10', dict(ext_options.items() + \
|
|
||||||
[('patches', ['multicool-0.1-10_icpc-wd308.patch'])])),
|
|
||||||
('ks', '1.10.6', ext_options),
|
|
||||||
('logcondens', '2.1.5', ext_options),
|
|
||||||
('Iso', '0.0-17', ext_options),
|
|
||||||
('penalized', '0.9-50', ext_options),
|
|
||||||
('clusterRepro', '0.5-1.1', ext_options),
|
|
||||||
('randomForestSRC', '2.4.2', ext_options),
|
|
||||||
('sm', '2.2-5.4', ext_options),
|
|
||||||
('psych', '1.7.5', ext_options),
|
|
||||||
('pbivnorm', '0.6.0', ext_options),
|
|
||||||
('lavaan', '0.5-23.1097', ext_options),
|
|
||||||
('matrixcalc', '1.0-3', ext_options),
|
|
||||||
('arm', '1.9-3', ext_options),
|
|
||||||
('mi', '1.0', ext_options),
|
|
||||||
('visNetwork', '1.0.3', ext_options),
|
|
||||||
('rgexf', '0.15.3', ext_options),
|
|
||||||
('influenceR', '0.1.0', ext_options),
|
|
||||||
('DiagrammeR', '0.9.0', ext_options),
|
|
||||||
('sem', '3.1-9', ext_options),
|
|
||||||
('jpeg', '0.1-8', ext_options),
|
|
||||||
('network', '1.13.0', ext_options),
|
|
||||||
('statnet.common', '3.3.0', ext_options),
|
|
||||||
('sna', '2.4', ext_options),
|
|
||||||
('glasso', '1.8', dict(ext_options.items() + \
|
|
||||||
[('patches', [('glasso-1.8-ifort-no-fixed.patch', 1)])])),
|
|
||||||
('huge', '1.2.7', ext_options),
|
|
||||||
('d3Network', '0.5.2.1', ext_options),
|
|
||||||
('ggm', '2.3', ext_options),
|
|
||||||
('qgraph', '1.4.3', ext_options),
|
|
||||||
('diveRsity', '1.9.90', ext_options),
|
|
||||||
('doSNOW', '1.0.14', ext_options),
|
|
||||||
('phangorn', '2.2.0', ext_options),
|
|
||||||
('geepack', '1.2-1', ext_options),
|
|
||||||
('lubridate', '1.6.0', ext_options),
|
|
||||||
('biom', '0.3.12', ext_options),
|
|
||||||
('pim', '2.0.1', ext_options),
|
|
||||||
('minpack.lm', '1.2-1', ext_options),
|
|
||||||
('rootSolve', '1.7', ext_options),
|
|
||||||
('diagram', '1.6.3', ext_options),
|
|
||||||
('FME', '1.3.5', ext_options),
|
|
||||||
('bmp', '0.2', ext_options),
|
|
||||||
('readbitmap', '0.1-4', ext_options),
|
|
||||||
('purrr', '0.2.2', ext_options),
|
|
||||||
('downloader', '0.4', ext_options),
|
|
||||||
('imager', '0.40.2', dict(ext_options.items() + \
|
|
||||||
[('patches', ['imager-0.40.2_icpc-wd308.patch'])])),
|
|
||||||
('pracma', '2.0.4', ext_options),
|
|
||||||
('signal', '0.7-6', ext_options),
|
|
||||||
('tuneR', '1.3.2', ext_options),
|
|
||||||
('pastecs', '1.3-18', ext_options),
|
|
||||||
('audio', '0.1-5', ext_options),
|
|
||||||
('fftw', '1.0-4', ext_options),
|
|
||||||
('seewave', '2.0.5', ext_options),
|
|
||||||
('gsw', '1.0-3', ext_options),
|
|
||||||
('oce', '0.9-21', ext_options),
|
|
||||||
('ineq', '0.2-13', ext_options),
|
|
||||||
('soundecology', '1.3.2', ext_options),
|
|
||||||
# ('KFAS', '1.2.9', ext_options),
|
|
||||||
# qualimap dependencies
|
|
||||||
('Biobase', '2.42.0', ext_options),
|
|
||||||
('NOISeq', '2.26.1', ext_options),
|
|
||||||
]
|
|
||||||
|
|
||||||
moduleclass = 'lang'
|
|
||||||
@ -16,12 +16,13 @@ source_urls = ['https://github.com/trilinos/Trilinos/archive/']
|
|||||||
sources = ['%(namelower)s-release-12-14-1.tar.gz']
|
sources = ['%(namelower)s-release-12-14-1.tar.gz']
|
||||||
patches = [
|
patches = [
|
||||||
('Trilinos-12.14.1-epetra_hdf5.patch'),
|
('Trilinos-12.14.1-epetra_hdf5.patch'),
|
||||||
|
('Trilinos-12.14.1-thyra_test.patch'),
|
||||||
# ('Trilinos-12.12.1_fix-CEpetra-LAPACK.patch', 'packages/CTrilinos'),
|
# ('Trilinos-12.12.1_fix-CEpetra-LAPACK.patch', 'packages/CTrilinos'),
|
||||||
# 'Trilinos-12.12.1_muelu-fix-function-signature.patch',
|
# 'Trilinos-12.12.1_muelu-fix-function-signature.patch',
|
||||||
# 'Trilinos-12.12.1_fix-Sundance.patch',
|
# 'Trilinos-12.12.1_fix-Sundance.patch',
|
||||||
]
|
]
|
||||||
|
|
||||||
configopts = '-DThyraEpetraAdapters_TestThyraDebugHang_MPI_4_DISABLE=ON '
|
configopts = '-DThyraEpetraAdapters_THYRADEBUGHANG_ENABLE=OFF '
|
||||||
configopts += '-DEpetraExt_ENABLE_HDF5=OFF '
|
configopts += '-DEpetraExt_ENABLE_HDF5=OFF '
|
||||||
|
|
||||||
builddependencies = [
|
builddependencies = [
|
||||||
@ -33,8 +34,8 @@ dependencies = [
|
|||||||
('Py', '2.7', '', True),
|
('Py', '2.7', '', True),
|
||||||
('Boost', '1.68.0', versionsuffix),
|
('Boost', '1.68.0', versionsuffix),
|
||||||
('SCOTCH', '6.0.6'),
|
('SCOTCH', '6.0.6'),
|
||||||
('SuiteSparse', '5.4.0', '-ParMETIS-4.0.3'),
|
('SuiteSparse', '5.4.0', '-METIS-5.1.0'),
|
||||||
('ParMETIS', '4.0.3'),
|
('METIS', '5.1.0', '', True),
|
||||||
('netCDF', '4.6.1'),
|
('netCDF', '4.6.1'),
|
||||||
('MATIO', '1.5.12', '', ('GCCcore', '6.3.0')),
|
('MATIO', '1.5.12', '', ('GCCcore', '6.3.0')),
|
||||||
('GLM', '0.9.9.0', '', ('GCCcore', '6.3.0')),
|
('GLM', '0.9.9.0', '', ('GCCcore', '6.3.0')),
|
||||||
@ -44,6 +45,9 @@ dependencies = [
|
|||||||
# disable TrilinosCouplings package, doesn't build correctly (examples fail to compile)
|
# disable TrilinosCouplings package, doesn't build correctly (examples fail to compile)
|
||||||
skip_exts = ['TrilinosCouplings']
|
skip_exts = ['TrilinosCouplings']
|
||||||
|
|
||||||
|
|
||||||
|
prebuildopts = "find packages/amesos2/test/solvers -type f -exec sed -i.bak 's/-lifcoremt_pic/-lifcoremt_pic -lcamd -lccolamd/g' {} + && "
|
||||||
|
|
||||||
# workaround for Teuchos.pyc not being found during "make install"
|
# workaround for Teuchos.pyc not being found during "make install"
|
||||||
# see https://github.com/trilinos/Trilinos/issues/1749
|
# see https://github.com/trilinos/Trilinos/issues/1749
|
||||||
preinstallopts = "cd %(builddir)s/trilinos-%(version)s-Source/packages/PyTrilinos/src/PyTrilinos && "
|
preinstallopts = "cd %(builddir)s/trilinos-%(version)s-Source/packages/PyTrilinos/src/PyTrilinos && "
|
||||||
|
|||||||
10
t/Trilinos/Trilinos-12.14.1-thyra_test.patch
Normal file
10
t/Trilinos/Trilinos-12.14.1-thyra_test.patch
Normal file
@ -0,0 +1,10 @@
|
|||||||
|
--- packages/thyra/adapters/epetra/test/CMakeLists.txt.orig 2019-04-26 08:08:36.271709024 +0200
|
||||||
|
+++ packages/thyra/adapters/epetra/test/CMakeLists.txt 2019-04-26 08:08:17.591718590 +0200
|
||||||
|
@@ -12,6 +12,7 @@
|
||||||
|
|
||||||
|
TRIBITS_ADD_EXECUTABLE_AND_TEST(
|
||||||
|
TestThyraDebugHang
|
||||||
|
+ EXCLUDE_IF_NOT_TRUE ${PACKAGE_NAME}_THYRADEBUGHANG_ENABLE
|
||||||
|
SOURCES
|
||||||
|
TestThyraDebugHang.cpp
|
||||||
|
${TEUCHOS_STD_PARALLEL_UNIT_TEST_MAIN}
|
||||||
Loading…
x
Reference in New Issue
Block a user