mirror of
https://code.it4i.cz/sccs/easyconfigs-it4i.git
synced 2025-04-07 23:42:12 +01:00
new file: p/ParaView/ParaView-5.6.2-foss-2020a-Python-3.7.8-mpi.eb
new file: p/Python/Python-3.7.8-GCCcore-9.3.0.eb new file: p/pybind11/pybind11-2.4.3-GCCcore-9.3.0-Python-3.7.8.eb new file: s/SciPy-bundle/SciPy-bundle-2020.03-foss-2020a-Python-3.7.8.eb deleted: p/ParaView/ParaView-5.6.2-foss-2020a-Python-3.7.4-mpi.eb
This commit is contained in:
Lukáš Krupčík
parent
d1956ee968
commit
39e4ef3cf2
@ -18,8 +18,8 @@ sources = ["ParaView-v%(version)s.tar.xz"]
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checksums = ['1f3710b77c58a46891808dbe23dc59a1259d9c6b7bb123aaaeaa6ddf2be882ea']
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dependencies = [
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('Python', '3.8.2'),
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('SciPy-bundle', '2020.03', '-Python-3.8.2'),
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('Python', '3.7.8'),
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('SciPy-bundle', '2020.03', '-Python-3.7.8'),
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('XZ', '5.2.5'),
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('HDF5', '1.10.6'),
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('netCDF', '4.7.4'),
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@ -42,12 +42,13 @@ configopts += '-DPARAVIEW_QT_VERSION=5 -DQT_QMAKE_EXECUTABLE=$EBROOTQT5/bin/qmak
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configopts += '-DPARAVIEW_USE_MPI=ON '
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configopts += '-DPARAVIEW_ENABLE_FFMPEG=ON '
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configopts += '-DPARAVIEW_ENABLE_PYTHON=ON '
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configopts += '-Wno-dev '
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# Python
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configopts += "-DVTK_WRAP_PYTHON=ON "
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configopts += "-DVTK_PYTHON_VERSION=%(pyver)s "
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configopts += "-DPYTHON_INCLUDE_DIR=$EBROOTPYTHON/include/python%(pyshortver)s "
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configopts += "-DPYTHON_LIBRARY=$EBROOTPYTHON/lib/libpython%%(pyshortver)s.%s " % SHLIB_EXT
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configopts += "-DPYTHON_INCLUDE_DIR=$EBROOTPYTHON/include/python%(pyshortver)sm "
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configopts += "-DPYTHON_LIBRARY=$EBROOTPYTHON/lib/libpython%%(pyshortver)sm.%s " % SHLIB_EXT
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# Third party libs
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configopts += '-DVTK_USE_SYSTEM_MPI4PY=ON '
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307
p/Python/Python-3.7.8-GCCcore-9.3.0.eb
Normal file
307
p/Python/Python-3.7.8-GCCcore-9.3.0.eb
Normal file
@ -0,0 +1,307 @@
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# JH 2020
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name = 'Python'
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version = '3.7.8'
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homepage = 'https://python.org/'
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description = """Python is a programming language that lets you work more quickly and integrate your systems
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more effectively."""
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toolchain = {'name': 'GCCcore', 'version': '9.3.0'}
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toolchainopts = {'pic': True}
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source_urls = ['https://www.python.org/ftp/%(namelower)s/%(version)s/']
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sources = [SOURCE_TGZ]
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#patches = ['Python-3.7-faulthandler.patch']
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#checksums = [
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# 'd63e63e14e6d29e17490abbe6f7d17afb3db182dbd801229f14e55f4157c4ba3', # Python-3.7.4.tgz
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# 'd061cd176a8aebb1895d84fd9134633abbdf9af26a22d649e5049df276574c08', # Python-3.7-faulthandler.patch
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#]
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dependencies = [
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('binutils', '2.34'), # required for pip install that involves compilation
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('bzip2', '1.0.8'), # required for bz2 package in Python stdlib
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('zlib', '1.2.11'),
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('libreadline', '8.0'),
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('ncurses', '6.2'),
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('SQLite', '3.31.1'),
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('XZ', '5.2.5'),
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('GMP', '6.2.0'), # required for pycrypto
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('libffi', '3.3'), # required for cryptograph
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# OS dependency should be preferred if the os version is more recent then this version,
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# it's nice to have an up to date openssl for security reasons
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# Python 3.7 requires OpenSSL >= 1.0.2, uncomment line below if OS version is too old (e.g. CentOS 6)
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# ('OpenSSL', '1.1.1d'),
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]
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osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')]
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# symlink 'pip' command to 'pip3' that is included with Python installation
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# required so we can update pip to version included in extensions, using pip
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installopts = " && ln -s %(installdir)s/bin/pip3 %(installdir)s/bin/pip"
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exts_default_options = {
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'download_dep_fail': True,
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'source_urls': [PYPI_SOURCE],
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'use_pip': True,
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'sanity_pip_check': True,
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}
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# order is important!
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# package versions updated 23 April 2020
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exts_list = [
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('pip', '20.0.2', {
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'use_pip': False,
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'checksums': ['7db0c8ea4c7ea51c8049640e8e6e7fde949de672bfa4949920675563a5a6967f'],
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}),
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('setuptools', '45.2.0', {
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'source_tmpl': '%(name)s-%(version)s.zip',
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'checksums': ['89c6e6011ec2f6d57d43a3f9296c4ef022c2cbf49bab26b407fe67992ae3397f'],
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}),
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('wheel', '0.34.2', {
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'checksums': ['8788e9155fe14f54164c1b9eb0a319d98ef02c160725587ad60f14ddc57b6f96'],
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}),
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('nose', '1.3.7', {
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'checksums': ['f1bffef9cbc82628f6e7d7b40d7e255aefaa1adb6a1b1d26c69a8b79e6208a98'],
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}),
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('blist', '1.3.6', {
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'checksums': ['3a12c450b001bdf895b30ae818d4d6d3f1552096b8c995f0fe0c74bef04d1fc3'],
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}),
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('paycheck', '1.0.2', {
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'checksums': ['6db7fc367c146cd59d2327ad4d2d6b0a24bc1be2d6953bb0773cbf702ee1ed34'],
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}),
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('pbr', '5.4.5', {
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'checksums': ['07f558fece33b05caf857474a366dfcc00562bca13dd8b47b2b3e22d9f9bf55c'],
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}),
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('Cython', '0.29.16', {
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'checksums': ['232755284f942cbb3b43a06cd85974ef3c970a021aef19b5243c03ee2b08fa05'],
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}),
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('six', '1.14.0', {
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'checksums': ['236bdbdce46e6e6a3d61a337c0f8b763ca1e8717c03b369e87a7ec7ce1319c0a'],
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}),
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('toml', '0.10.0', {
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'checksums': ['229f81c57791a41d65e399fc06bf0848bab550a9dfd5ed66df18ce5f05e73d5c'],
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}),
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('setuptools_scm', '3.5.0', {
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'checksums': ['5bdf21a05792903cafe7ae0c9501182ab52497614fa6b1750d9dbae7b60c1a87'],
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}),
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('python-dateutil', '2.8.1', {
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'modulename': 'dateutil',
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'checksums': ['73ebfe9dbf22e832286dafa60473e4cd239f8592f699aa5adaf10050e6e1823c'],
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}),
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('decorator', '4.4.2', {
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'checksums': ['e3a62f0520172440ca0dcc823749319382e377f37f140a0b99ef45fecb84bfe7'],
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}),
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('liac-arff', '2.4.0', {
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'modulename': 'arff',
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'checksums': ['47afcd1fd248b2892f66075987422d0576fc2c2fd0811d0cbd32f2135b065df5'],
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}),
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('pycrypto', '2.6.1', {
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'modulename': 'Crypto',
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'checksums': ['f2ce1e989b272cfcb677616763e0a2e7ec659effa67a88aa92b3a65528f60a3c'],
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}),
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('ecdsa', '0.15', {
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'checksums': ['8f12ac317f8a1318efa75757ef0a651abe12e51fc1af8838fb91079445227277'],
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}),
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('ipaddress', '1.0.23', {
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'checksums': ['b7f8e0369580bb4a24d5ba1d7cc29660a4a6987763faf1d8a8046830e020e7e2'],
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}),
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('asn1crypto', '1.3.0', {
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'checksums': ['5a215cb8dc12f892244e3a113fe05397ee23c5c4ca7a69cd6e69811755efc42d'],
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}),
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('idna', '2.9', {
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'checksums': ['7588d1c14ae4c77d74036e8c22ff447b26d0fde8f007354fd48a7814db15b7cb'],
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}),
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('pycparser', '2.20', {
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'checksums': ['2d475327684562c3a96cc71adf7dc8c4f0565175cf86b6d7a404ff4c771f15f0'],
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}),
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('cffi', '1.14.0', {
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'checksums': ['2d384f4a127a15ba701207f7639d94106693b6cd64173d6c8988e2c25f3ac2b6'],
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}),
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('cryptography', '2.9.2', {
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'checksums': ['a0c30272fb4ddda5f5ffc1089d7405b7a71b0b0f51993cb4e5dbb4590b2fc229'],
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}),
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('pyasn1', '0.4.8', {
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'checksums': ['aef77c9fb94a3ac588e87841208bdec464471d9871bd5050a287cc9a475cd0ba'],
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}),
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('PyNaCl', '1.3.0', {
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'modulename': 'nacl',
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'checksums': ['0c6100edd16fefd1557da078c7a31e7b7d7a52ce39fdca2bec29d4f7b6e7600c'],
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}),
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('bcrypt', '3.1.7', {
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'checksums': ['0b0069c752ec14172c5f78208f1863d7ad6755a6fae6fe76ec2c80d13be41e42'],
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}),
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('paramiko', '2.7.1', {
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'checksums': ['920492895db8013f6cc0179293147f830b8c7b21fdfc839b6bad760c27459d9f'],
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}),
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('pyparsing', '2.4.7', {
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'checksums': ['c203ec8783bf771a155b207279b9bccb8dea02d8f0c9e5f8ead507bc3246ecc1'],
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}),
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('netifaces', '0.10.9', {
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'checksums': ['2dee9ffdd16292878336a58d04a20f0ffe95555465fee7c9bd23b3490ef2abf3'],
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}),
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('netaddr', '0.7.19', {
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'checksums': ['38aeec7cdd035081d3a4c306394b19d677623bf76fa0913f6695127c7753aefd'],
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}),
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('mock', '4.0.1', {
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'checksums': ['2a572b715f09dd2f0a583d8aeb5bb67d7ed7a8fd31d193cf1227a99c16a67bc3'],
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}),
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('pytz', '2019.3', {
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'checksums': ['b02c06db6cf09c12dd25137e563b31700d3b80fcc4ad23abb7a315f2789819be'],
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}),
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('bitstring', '3.1.6', {
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'checksums': ['c97a8e2a136e99b523b27da420736ae5cb68f83519d633794a6a11192f69f8bf'],
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}),
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('appdirs', '1.4.3', {
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'checksums': ['9e5896d1372858f8dd3344faf4e5014d21849c756c8d5701f78f8a103b372d92'],
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}),
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('distlib', '0.3.0', {
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'source_tmpl': 'distlib-%(version)s.zip',
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'checksums': ['2e166e231a26b36d6dfe35a48c4464346620f8645ed0ace01ee31822b288de21'],
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}),
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('filelock', '3.0.12', {
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'checksums': ['18d82244ee114f543149c66a6e0c14e9c4f8a1044b5cdaadd0f82159d6a6ff59'],
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}),
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('virtualenv', '20.0.18', {
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'checksums': ['ac53ade75ca189bc97b6c1d9ec0f1a50efe33cbf178ae09452dcd9fd309013c1'],
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}),
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('docopt', '0.6.2', {
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'checksums': ['49b3a825280bd66b3aa83585ef59c4a8c82f2c8a522dbe754a8bc8d08c85c491'],
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}),
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('joblib', '0.14.1', {
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'checksums': ['0630eea4f5664c463f23fbf5dcfc54a2bc6168902719fa8e19daf033022786c8'],
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}),
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('chardet', '3.0.4', {
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'checksums': ['84ab92ed1c4d4f16916e05906b6b75a6c0fb5db821cc65e70cbd64a3e2a5eaae'],
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}),
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('certifi', '2020.4.5.1', {
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'checksums': ['51fcb31174be6e6664c5f69e3e1691a2d72a1a12e90f872cbdb1567eb47b6519'],
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}),
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('urllib3', '1.25.9', {
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'checksums': ['3018294ebefce6572a474f0604c2021e33b3fd8006ecd11d62107a5d2a963527'],
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}),
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('requests', '2.23.0', {
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'checksums': ['b3f43d496c6daba4493e7c431722aeb7dbc6288f52a6e04e7b6023b0247817e6'],
|
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}),
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('xlrd', '1.2.0', {
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'checksums': ['546eb36cee8db40c3eaa46c351e67ffee6eeb5fa2650b71bc4c758a29a1b29b2'],
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}),
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('py_expression_eval', '0.3.9', {
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'checksums': ['d80a948f91f78d08f789b0a7c3fb2bd9a34ad625f5ce88c262a6c91189a4abb9'],
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}),
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('tabulate', '0.8.7', {
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'checksums': ['db2723a20d04bcda8522165c73eea7c300eda74e0ce852d9022e0159d7895007'],
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}),
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('ujson', '2.0.3', {
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'checksums': ['bd2deffc983827510e5145fb66e4cc0f577480c62fe0b4882139f8f7d27ae9a3'],
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}),
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('atomicwrites', '1.3.0', {
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'checksums': ['75a9445bac02d8d058d5e1fe689654ba5a6556a1dfd8ce6ec55a0ed79866cfa6'],
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}),
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('py', '1.8.1', {
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'checksums': ['5e27081401262157467ad6e7f851b7aa402c5852dbcb3dae06768434de5752aa'],
|
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}),
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('scandir', '1.10.0', {
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'checksums': ['4d4631f6062e658e9007ab3149a9b914f3548cb38bfb021c64f39a025ce578ae'],
|
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}),
|
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('pathlib2', '2.3.5', {
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'checksums': ['6cd9a47b597b37cc57de1c05e56fb1a1c9cc9fab04fe78c29acd090418529868'],
|
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}),
|
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('zipp', '1.2.0', {
|
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'checksums': ['c70410551488251b0fee67b460fb9a536af8d6f9f008ad10ac51f615b6a521b1'],
|
||||
}),
|
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('importlib_metadata', '1.6.0', {
|
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'checksums': ['34513a8a0c4962bc66d35b359558fd8a5e10cd472d37aec5f66858addef32c1e'],
|
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}),
|
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('pluggy', '0.13.1', {
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'checksums': ['15b2acde666561e1298d71b523007ed7364de07029219b604cf808bfa1c765b0'],
|
||||
}),
|
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('more-itertools', '8.2.0', {
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'checksums': ['b1ddb932186d8a6ac451e1d95844b382f55e12686d51ca0c68b6f61f2ab7a507'],
|
||||
}),
|
||||
('attrs', '19.3.0', {
|
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'modulename': 'attr',
|
||||
'checksums': ['f7b7ce16570fe9965acd6d30101a28f62fb4a7f9e926b3bbc9b61f8b04247e72'],
|
||||
}),
|
||||
('wcwidth', '0.1.9', {
|
||||
'checksums': ['ee73862862a156bf77ff92b09034fc4825dd3af9cf81bc5b360668d425f3c5f1'],
|
||||
}),
|
||||
('pytest', '5.4.1', {
|
||||
'checksums': ['84dde37075b8805f3d1f392cc47e38a0e59518fb46a431cfdaf7cf1ce805f970'],
|
||||
}),
|
||||
('MarkupSafe', '1.1.1', {
|
||||
'checksums': ['29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b'],
|
||||
}),
|
||||
('Jinja2', '2.11.2', {
|
||||
'checksums': ['89aab215427ef59c34ad58735269eb58b1a5808103067f7bb9d5836c651b3bb0'],
|
||||
}),
|
||||
('packaging', '20.3', {
|
||||
'checksums': ['3c292b474fda1671ec57d46d739d072bfd495a4f51ad01a055121d81e952b7a3'],
|
||||
}),
|
||||
('sphinxcontrib-websupport', '1.2.1', {
|
||||
'modulename': 'sphinxcontrib.websupport',
|
||||
'checksums': ['545f5da4bd7757e82b8a23ce3af9500c6ffeedbcb13429fca436ad1e80bd10cf'],
|
||||
}),
|
||||
('Pygments', '2.5.2', {
|
||||
'checksums': ['98c8aa5a9f778fcd1026a17361ddaf7330d1b7c62ae97c3bb0ae73e0b9b6b0fe'],
|
||||
}),
|
||||
('imagesize', '1.2.0', {
|
||||
'checksums': ['b1f6b5a4eab1f73479a50fb79fcf729514a900c341d8503d62a62dbc4127a2b1'],
|
||||
}),
|
||||
('docutils', '0.16', {
|
||||
'checksums': ['c2de3a60e9e7d07be26b7f2b00ca0309c207e06c100f9cc2a94931fc75a478fc'],
|
||||
}),
|
||||
('snowballstemmer', '2.0.0', {
|
||||
'checksums': ['df3bac3df4c2c01363f3dd2cfa78cce2840a79b9f1c2d2de9ce8d31683992f52'],
|
||||
}),
|
||||
('Babel', '2.8.0', {
|
||||
'checksums': ['1aac2ae2d0d8ea368fa90906567f5c08463d98ade155c0c4bfedd6a0f7160e38'],
|
||||
}),
|
||||
('alabaster', '0.7.12', {
|
||||
'checksums': ['a661d72d58e6ea8a57f7a86e37d86716863ee5e92788398526d58b26a4e4dc02'],
|
||||
}),
|
||||
('sphinxcontrib-applehelp', '1.0.2', {
|
||||
'modulename': 'sphinxcontrib.applehelp',
|
||||
'checksums': ['a072735ec80e7675e3f432fcae8610ecf509c5f1869d17e2eecff44389cdbc58'],
|
||||
}),
|
||||
('sphinxcontrib-devhelp', '1.0.2', {
|
||||
'modulename': 'sphinxcontrib.devhelp',
|
||||
'checksums': ['ff7f1afa7b9642e7060379360a67e9c41e8f3121f2ce9164266f61b9f4b338e4'],
|
||||
}),
|
||||
('sphinxcontrib-htmlhelp', '1.0.3', {
|
||||
'modulename': 'sphinxcontrib.htmlhelp',
|
||||
'checksums': ['e8f5bb7e31b2dbb25b9cc435c8ab7a79787ebf7f906155729338f3156d93659b'],
|
||||
}),
|
||||
('sphinxcontrib-jsmath', '1.0.1', {
|
||||
'modulename': 'sphinxcontrib.jsmath',
|
||||
'checksums': ['a9925e4a4587247ed2191a22df5f6970656cb8ca2bd6284309578f2153e0c4b8'],
|
||||
}),
|
||||
('sphinxcontrib-qthelp', '1.0.3', {
|
||||
'modulename': 'sphinxcontrib.qthelp',
|
||||
'checksums': ['4c33767ee058b70dba89a6fc5c1892c0d57a54be67ddd3e7875a18d14cba5a72'],
|
||||
}),
|
||||
('sphinxcontrib-serializinghtml', '1.1.4', {
|
||||
'modulename': 'sphinxcontrib.serializinghtml',
|
||||
'checksums': ['eaa0eccc86e982a9b939b2b82d12cc5d013385ba5eadcc7e4fed23f4405f77bc'],
|
||||
}),
|
||||
('Sphinx', '3.0.2', {
|
||||
'checksums': ['d7c6e72c6aa229caf96af82f60a0d286a1521d42496c226fe37f5a75dcfe2941'],
|
||||
}),
|
||||
('click', '7.1.1', {
|
||||
'checksums': ['8a18b4ea89d8820c5d0c7da8a64b2c324b4dabb695804dbfea19b9be9d88c0cc'],
|
||||
}),
|
||||
('psutil', '5.7.0', {
|
||||
'checksums': ['685ec16ca14d079455892f25bd124df26ff9137664af445563c1bd36629b5e0e'],
|
||||
}),
|
||||
('future', '0.18.2', {
|
||||
'checksums': ['b1bead90b70cf6ec3f0710ae53a525360fa360d306a86583adc6bf83a4db537d'],
|
||||
}),
|
||||
('sortedcontainers', '2.2.2', {
|
||||
'checksums': ['4e73a757831fc3ca4de2859c422564239a31d8213d09a2a666e375807034d2ba'],
|
||||
}),
|
||||
('intervaltree', '3.0.2', {
|
||||
'checksums': ['cb4f61c81dcb4fea6c09903f3599015a83c9bdad1f0bbd232495e6681e19e273'],
|
||||
}),
|
||||
]
|
||||
|
||||
moduleclass = 'lang'
|
||||
35
p/pybind11/pybind11-2.4.3-GCCcore-9.3.0-Python-3.7.8.eb
Normal file
35
p/pybind11/pybind11-2.4.3-GCCcore-9.3.0-Python-3.7.8.eb
Normal file
@ -0,0 +1,35 @@
|
||||
# JH 2020
|
||||
|
||||
easyblock = 'CMakeMake'
|
||||
|
||||
name = 'pybind11'
|
||||
version = '2.4.3'
|
||||
versionsuffix = '-Python-%(pyver)s'
|
||||
|
||||
homepage = 'https://pybind11.readthedocs.io'
|
||||
description = """pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa,
|
||||
mainly to create Python bindings of existing C++ code."""
|
||||
|
||||
toolchain = {'name': 'GCCcore', 'version': '9.3.0'}
|
||||
|
||||
source_urls = ['https://github.com/pybind/pybind11/archive/']
|
||||
sources = ['v%(version)s.tar.gz']
|
||||
checksums = ['1eed57bc6863190e35637290f97a20c81cfe4d9090ac0a24f3bbf08f265eb71d']
|
||||
|
||||
builddependencies = [
|
||||
('binutils', '2.34'),
|
||||
('CMake', '3.16.4'),
|
||||
('Eigen', '3.3.7'),
|
||||
]
|
||||
dependencies = [
|
||||
('Python', '3.7.8'),
|
||||
]
|
||||
|
||||
configopts = "-DPYTHON_EXECUTABLE=$EBROOTPYTHON/bin/python"
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': [],
|
||||
'dirs': ['include/pybind11', 'share/cmake/pybind11'],
|
||||
}
|
||||
|
||||
moduleclass = 'lib'
|
||||
@ -0,0 +1,53 @@
|
||||
# JH 2020
|
||||
|
||||
easyblock = 'PythonBundle'
|
||||
|
||||
name = 'SciPy-bundle'
|
||||
version = '2020.03'
|
||||
versionsuffix = '-Python-3.7.8'
|
||||
|
||||
homepage = 'https://python.org/'
|
||||
description = "Bundle of Python packages for scientific software"
|
||||
|
||||
toolchain = {'name': 'foss', 'version': '2020a'}
|
||||
toolchainopts = {'pic': True, 'lowopt': True}
|
||||
|
||||
dependencies = [
|
||||
('Python', '3.7.8'),
|
||||
('pybind11', '2.4.3', versionsuffix), # required by scipy
|
||||
]
|
||||
|
||||
use_pip = True
|
||||
|
||||
exts_default_options = {'source_urls': [PYPI_SOURCE]}
|
||||
|
||||
# order is important!
|
||||
exts_list = [
|
||||
('numpy', '1.18.3', {
|
||||
'source_tmpl': '%(name)s-%(version)s.zip',
|
||||
'checksums': ['e46e2384209c91996d5ec16744234d1c906ab79a701ce1a26155c9ec890b8dc8'],
|
||||
}),
|
||||
('scipy', '1.4.1', {
|
||||
'patches': ['scipy-1.4.1-fix-pthread.patch'],
|
||||
'checksums': [
|
||||
'dee1bbf3a6c8f73b6b218cb28eed8dd13347ea2f87d572ce19b289d6fd3fbc59', # scipy-1.4.1.tar.gz
|
||||
'4e2162a93caddce63a1aa2dfb6c181774a4f6615950e1d60c54bb4308fee3bb3', # scipy-1.4.1-fix-pthread.patch
|
||||
],
|
||||
}),
|
||||
('mpi4py', '3.0.3', {
|
||||
'checksums': ['012d716c8b9ed1e513fcc4b18e5af16a8791f51e6d1716baccf988ad355c5a1f'],
|
||||
}),
|
||||
('pandas', '1.0.3', {
|
||||
'checksums': ['32f42e322fb903d0e189a4c10b75ba70d90958cc4f66a1781ed027f1a1d14586'],
|
||||
}),
|
||||
('mpmath', '1.1.0', {
|
||||
'checksums': ['fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6'],
|
||||
}),
|
||||
('deap', '1.3.1', {
|
||||
'checksums': ['11f54493ceb54aae10dde676577ef59fc52d52f82729d5a12c90b0813c857a2f'],
|
||||
}),
|
||||
]
|
||||
|
||||
sanity_pip_check = True
|
||||
|
||||
moduleclass = 'lang'
|
||||
Loading…
x
Reference in New Issue
Block a user