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new file: a/arpack-ng/arpack-ng-3.5.0-intel-2020a.eb
new file: d/DFTB+/DFTB+-17.1_test_dptools.patch new file: d/DFTB+/DFTB+-19.1-intel-2020a-Py-3.7.eb new file: p/Py/Py-3.6.old.eb
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a/arpack-ng/arpack-ng-3.5.0-intel-2020a.eb
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# IT4Innovations 2020a
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easyblock = 'ConfigureMake'
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name = 'arpack-ng'
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version = '3.5.0'
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homepage = 'http://forge.scilab.org/index.php/p/arpack-ng/'
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description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems."""
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toolchain = {'name': 'intel', 'version': '2020a'}
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toolchainopts = {'pic': True, 'usempi': True}
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source_urls = ['https://github.com/opencollab/arpack-ng/archive/']
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sources = ['%(version)s.tar.gz']
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checksums = ['50f7a3e3aec2e08e732a487919262238f8504c3ef927246ec3495617dde81239']
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builddependencies = [('Autotools', '20180311', '', True)]
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preconfigopts = "sh bootstrap && "
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configopts = '--enable-mpi --with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"'
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sanity_check_paths = {
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'files': ["lib/libarpack.a", "lib/libarpack.%s" % SHLIB_EXT, "lib/libparpack.a", "lib/libparpack.%s" % SHLIB_EXT],
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'dirs': []
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}
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moduleclass = 'numlib'
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d/DFTB+/DFTB+-17.1_test_dptools.patch
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d/DFTB+/DFTB+-17.1_test_dptools.patch
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* relax test for exact match, compare difference with predefined tolerance instead
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author: Miguel Dias Costa (National University of Singapore)
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--- test/tools/dptools/test_grids.py.orig 2017-10-27 14:16:30.679276000 +0800
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+++ test/tools/dptools/test_grids.py 2017-10-27 14:17:28.896727649 +0800
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@@ -39,7 +39,8 @@
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)
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gridcoords = grid.cartesian_to_gridcoord([1.9, -0.5, 1.5])
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true_gridcoords = np.array([-1, 2, 9])
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- self.assertTrue(np.all(gridcoords == true_gridcoords))
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+ diff = np.max(np.abs(gridcoords - true_gridcoords))
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+ self.assertLess(diff, FLOAT_TOLERANCE)
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def test_get_corners_gridcoord(self):
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d/DFTB+/DFTB+-19.1-intel-2020a-Py-3.7.eb
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d/DFTB+/DFTB+-19.1-intel-2020a-Py-3.7.eb
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# IT4Innovations 2020
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easyblock = 'ConfigureMake'
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name = 'DFTB+'
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version = '19.1'
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versionsuffix = '-Py-3.7'
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homepage = 'https://www.dftb-plus.info'
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description = """DFTB+ is a fast and efficient versatile quantum mechanical simulation package. It is based on the
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Density Functional Tight Binding (DFTB) method, containing almost all of the useful extensions which have been
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developed for the DFTB framework so far. Using DFTB+ you can carry out quantum mechanical simulations like with
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ab-initio density functional theory based packages, but in an approximate way gaining typically around two order of
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magnitude in speed."""
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toolchain = {'name': 'intel', 'version': '2020a'}
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# some tests, e.g. spinorbit, fail with more aggressive optimization
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toolchainopts = {'lowopt': True, 'optarch': False}
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source_urls = ['https://github.com/dftbplus/dftbplus/archive/']
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sources = ['%(version)s.tar.gz']
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#patches = ['DFTB+-%(version)s_test_dptools.patch']
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dependencies = [
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('Py', '3.7', '', True),
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('arpack-ng', '3.5.0'),
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]
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skipsteps = ['configure']
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prebuildopts = "./utils/get_opt_externals dftd3 && ./utils/get_opt_externals slakos && "
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prebuildopts += "cp sys/make.x86_64-linux-intel make.arch && "
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prebuildopts += 'sed -i "s|-O2|$OPTFLAGS|g" make.arch && '
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prebuildopts += "sed -i 's|$(ROOT)/_install|%(installdir)s|' make.config && "
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buildopts = "LNOPT='-static-intel'"
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runtest = 'test'
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modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'}
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sanity_check_paths = {
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'files': ['bin/' + x for x in ['dftb+', 'dp_bands', 'dp_dos', 'gen2cif',
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'gen2xyz', 'modes', 'waveplot', 'xyz2gen']],
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'dirs': ['lib/python%(pyshortver)s/site-packages']
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}
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sanity_check_commands = [('python', '-c "import dptools"')]
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moduleclass = 'phys'
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p/Py/Py-3.6.old.eb
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# IT4Innovations 2019
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easyblock = "Toolchain"
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name = 'Py'
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version = '3.6'
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homepage = 'https://www.python.org'
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description = """Python 3.6 toolchain"""
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toolchain = SYSTEM
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dependencies = [
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('Python', '3.6.8', '-base', ('GCC', '6.3.0-2.27')),
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('GCC', '6.3.0-2.27'),
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]
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moduleclass = 'toolchain'
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