mirror of
https://code.it4i.cz/sccs/easyconfigs-it4i.git
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new file: f/flatbuffers/flatbuffers-2.0.7-GCCcore-11.3.0.eb
new file: o/OpenMPI/OpenMPI-4.1.4-GCC-12.2.0.eb modified: q/QuantumESPRESSO/QuantumESPRESSO-7.1-NVHPC-21.9.eb new file: t/Tensorflow/TensorFlow-2.10.1-foss-2022a-CUDA-11.7.0.eb new file: t/Tensorflow/TensorFlow-2.8.4_exclude-xnnpack-on-ppc.patch new file: t/Tensorflow/TensorFlow-2.8.4_resolve-gcc-symlinks.patch new file: t/Tensorflow/TensorFlow-2.9.1_remove-duplicate-gpu-tests.patch new file: t/Tensorflow/TensorFlow-2.9.1_remove-libclang-and-io-gcs-deps.patch new file: u/UCX/UCX-1.13.1-GCCcore-12.2.0.eb new file: x/XALT/XALT-2.10.45-GPU-eb.eb modified: x/XALT/XALT-2.10.45-eb.eb
This commit is contained in:
parent
9e05f5c97f
commit
3178cb7962
64
f/flatbuffers/flatbuffers-2.0.7-GCCcore-11.3.0.eb
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64
f/flatbuffers/flatbuffers-2.0.7-GCCcore-11.3.0.eb
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@ -0,0 +1,64 @@
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# IT4Innovations 2023
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# JK
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# --from-pr 17168
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##
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# Author: Robert Mijakovic <robert.mijakovic@lxp.lu>
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##
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easyblock = 'CMakeNinja'
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name = 'flatbuffers'
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version = '2.0.7'
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homepage = 'https://github.com/google/flatbuffers/'
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description = """FlatBuffers: Memory Efficient Serialization Library
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Includes the Flatbuffers compiler, C/C++ bindings and Python runtime library.
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"""
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toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
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toolchainopts = {'pic': True}
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source_urls = ['https://github.com/google/flatbuffers/archive/v%(version)s/']
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sources = [SOURCE_TAR_GZ]
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checksums = ['4c7986174dc3941220bf14feaacaad409c3e1526d9ad7f490366fede9a6f43fa']
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builddependencies = [
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('binutils', '2.38'),
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('CMake', '3.23.1'),
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('Ninja', '1.10.2'),
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]
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dependencies = [
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('Python', '3.10.4'),
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]
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# Install into the same dir as the Python extension which is /lib
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configopts = '-DFLATBUFFERS_ENABLE_PCH=ON -DCMAKE_INSTALL_LIBDIR=lib'
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exts_defaultclass = 'PythonPackage'
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exts_default_options = {
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'source_urls': [PYPI_SOURCE],
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'download_dep_fail': True,
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'use_pip': True,
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'sanity_pip_check': True,
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}
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exts_list = [
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('flatbuffers', version, {
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'sources': {
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'download_filename': SOURCE_TAR_GZ,
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'filename': '%(name)s-python-%(version)s.tar.gz',
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},
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'checksums': ['0ae7d69c5b82bf41962ca5fde9cc43033bc9501311d975fd5a25e8a7d29c1245'],
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}),
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]
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sanity_check_paths = {
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'files': ['include/flatbuffers/flatbuffers.h', 'bin/flatc', 'lib/libflatbuffers.a'],
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'dirs': ['lib/cmake', 'lib/python%(pyshortver)s/site-packages'],
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}
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modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'}
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moduleclass = 'devel'
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99
o/OpenMPI/OpenMPI-4.1.4-GCC-12.2.0.eb
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99
o/OpenMPI/OpenMPI-4.1.4-GCC-12.2.0.eb
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@ -0,0 +1,99 @@
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# IT4Innovations 2023
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# JK
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name = 'OpenMPI'
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version = '4.1.4'
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homepage = 'https://www.open-mpi.org/'
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description = """The Open MPI Project is an open source MPI-3 implementation."""
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toolchain = {'name': 'GCC', 'version': '12.2.0'}
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source_urls = ['https://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads']
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sources = [SOURCELOWER_TAR_BZ2]
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patches = [
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'OpenMPI-4.1.1_build-with-internal-cuda-header.patch',
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'OpenMPI-4.1.1_opal-datatype-cuda-performance.patch',
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]
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checksums = [
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'92912e175fd1234368c8730c03f4996fe5942e7479bb1d10059405e7f2b3930d', # openmpi-4.1.4.tar.bz2
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# OpenMPI-4.1.1_build-with-internal-cuda-header.patch
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'63eac52736bdf7644c480362440a7f1f0ae7c7cae47b7565f5635c41793f8c83',
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# OpenMPI-4.1.1_opal-datatype-cuda-performance.patch
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'b767c7166cf0b32906132d58de5439c735193c9fd09ec3c5c11db8d5fa68750e',
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]
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builddependencies = [
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('pkgconf', '1.9.3'),
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('Perl', '5.36.0'),
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('Autotools', '20220317'),
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]
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dependencies = [
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('zlib', '1.2.12'),
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('hwloc', '2.8.0'),
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('libevent', '2.1.12'),
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('UCX', '1.13.1'),
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('libfabric', '1.16.1'),
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('PMIx', '4.2.2'),
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('UCC', '1.1.0'),
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]
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# Update configure to include changes from the "internal-cuda" patch
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# by running a subset of autogen.pl sufficient to achieve this
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# without doing the full, long-running regeneration.
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preconfigopts = ' && '.join([
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'cd config',
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'autom4te --language=m4sh opal_get_version.m4sh -o opal_get_version.sh',
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'cd ..',
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'autoconf',
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'autoheader',
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'aclocal',
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'automake',
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''
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])
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# IT4I-specific settings
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configopts = '--enable-shared --enable-mpi-thread-multiple --with-verbs '
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configopts += '--enable-mpirun-prefix-by-default '
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configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support
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configopts += '--with-tm=/opt/pbs ' # Enable PBS
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configopts += '--enable-mpi-cxx ' # Enable building the C++ MPI bindings
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configopts += '--with-ucx=$EBROOTUCX '
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osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')]
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postinstallcmds = [
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'echo "# By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default." >> %(installdir)s/etc/openmpi-mca-params.conf',
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'echo "btl_openib_allow_ib = true" >> %(installdir)s/etc/openmpi-mca-params.conf',
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]
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local_libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"]
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sanity_check_paths = {
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'files': [
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"bin/%s" %
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binfile for binfile in [
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"ompi_info", "opal_wrapper", "orterun"]] + [
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"lib/lib%s.%s" %
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(libfile, SHLIB_EXT) for libfile in local_libs] + [
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"include/%s.h" %
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x for x in [
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"mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], 'dirs': [], }
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import os
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if os.environ.get("CLUSTERNAME") in ["BARBORA"]:
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modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx5_0',
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'OMPI_MCA_btl_tcp_if_include': '10.33.4.0/24',
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'OMPI_MCA_orte_base_help_aggregate': '0',
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}
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elif os.environ.get("CLUSTERNAME") in ["KAROLINA"]:
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modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx5_0',
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'OMPI_MCA_orte_base_help_aggregate': '0',
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}
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else:
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modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx4_0',
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'OMPI_MCA_oob_tcp_if_include': '10.0.0.0/8',
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}
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moduleclass = 'mpi'
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@ -38,9 +38,9 @@ sources = [
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{'filename': 'wannier90-3.1.0.tar.gz', 'download_filename': 'v3.1.0.tar.gz'},
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]
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checksums = [
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'feacdbc67d084d55df464f989a916f20dfe11a50ccfda782573cdeed4fab3d3a', # qe-7.1-ReleasePack.tar.gz
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# '486b60f38fad7363f81d346adc69de004692f50c9f6be59eee5152a717ca1513', # qe-gipaw-7.1.tar.gz
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'40651a9832eb93dec20a8360dd535262c261c34e13c41b6755fa6915c936b254', # wannier90-3.1.0.tar.gz
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{'qe-7.1-ReleasePack.tar.gz': 'feacdbc67d084d55df464f989a916f20dfe11a50ccfda782573cdeed4fab3d3a'},
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# {'qe-gipaw-7.1.tar.gz': '486b60f38fad7363f81d346adc69de004692f50c9f6be59eee5152a717ca1513'},
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{'wannier90-3.1.0.tar.gz': '40651a9832eb93dec20a8360dd535262c261c34e13c41b6755fa6915c936b254'},
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]
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builddependencies = [
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@ -67,12 +67,9 @@ elif os.environ.get("CLUSTERNAME") in ["BARBORA"]:
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configopts += '-DNVFORTRAN_CUDA_CC=70 '
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# gipaw zatim neni portle na GPU
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<<<<<<< HEAD
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buildopts = 'all gwl xspectra couple epw w90 gipaw'
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=======
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buildopts = 'all gwl xspectra couple epw w90' # no rule to make target 'gipaw'
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buildopts = 'all want gwl xspectra couple epw w90'
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#buildopts = 'all gwl xspectra couple epw w90' # no rule to make target 'gipaw'
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# preinstallopts = ' FC=pgfortran F77=pgfortran F90=pgfortran CC=pgcc CXX=pgc++ ctest -j4 --output-on-failure -L unit && '
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>>>>>>> 29b78ea8b06f36251039ac323d3514a3ffa54caa
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# parallel build tends to fail
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parallel = 1
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|
221
t/Tensorflow/TensorFlow-2.10.1-foss-2022a-CUDA-11.7.0.eb
Normal file
221
t/Tensorflow/TensorFlow-2.10.1-foss-2022a-CUDA-11.7.0.eb
Normal file
@ -0,0 +1,221 @@
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# IT4Innovations 2023
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||||
# JK
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||||
# --from-pr 17168
|
||||
easyblock = 'PythonBundle'
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||||
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name = 'TensorFlow'
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version = '2.10.1'
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versionsuffix = '-CUDA-%(cudaver)s'
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||||
|
||||
homepage = 'https://www.tensorflow.org/'
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description = "An open-source software library for Machine Intelligence"
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toolchain = {'name': 'foss', 'version': '2022a'}
|
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toolchainopts = {'pic': True}
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||||
builddependencies = [
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('Bazel', '5.1.1'),
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('protobuf', '3.19.4'),
|
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# git 2.x required, see also https://github.com/tensorflow/tensorflow/issues/29053
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('git', '2.36.0', '-nodocs'),
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('pybind11', '2.9.2'),
|
||||
('UnZip', '6.0'),
|
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('LLVM', '14.0.3'), # for debugging with llvm-symbolizer, to be removed
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||||
]
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||||
dependencies = [
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('CUDA', '11.7.0', '', SYSTEM),
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||||
('cuDNN', '8.4.1.50', versionsuffix, SYSTEM),
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||||
('NCCL', '2.12.12', versionsuffix),
|
||||
('Python', '3.10.4'),
|
||||
('h5py', '3.7.0'),
|
||||
('cURL', '7.83.0'),
|
||||
('dill', '0.3.6'),
|
||||
('double-conversion', '3.2.0'),
|
||||
('flatbuffers', '2.0.7'),
|
||||
('giflib', '5.2.1'),
|
||||
('hwloc', '2.7.1'),
|
||||
('ICU', '71.1'),
|
||||
('JsonCpp', '1.9.5'),
|
||||
('libjpeg-turbo', '2.1.3'),
|
||||
('LMDB', '0.9.29'),
|
||||
('NASM', '2.15.05'),
|
||||
('nsync', '1.25.0'),
|
||||
('SQLite', '3.38.3'),
|
||||
('protobuf-python', '3.19.4'),
|
||||
('libpng', '1.6.37'),
|
||||
('snappy', '1.1.9'),
|
||||
('zlib', '1.2.12'),
|
||||
('networkx', '2.8.4'), # required for pythran
|
||||
]
|
||||
|
||||
use_pip = True
|
||||
sanity_pip_check = True
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||||
|
||||
# Dependencies created and updated using findPythonDeps.sh:
|
||||
# https://gist.github.com/Flamefire/49426e502cd8983757bd01a08a10ae0d
|
||||
exts_list = [
|
||||
('wrapt', '1.14.1', {
|
||||
'checksums': ['380a85cf89e0e69b7cfbe2ea9f765f004ff419f34194018a6827ac0e3edfed4d'],
|
||||
}),
|
||||
('termcolor', '1.1.0', {
|
||||
'checksums': ['1d6d69ce66211143803fbc56652b41d73b4a400a2891d7bf7a1cdf4c02de613b'],
|
||||
}),
|
||||
('tensorflow-estimator', '2.10.0', {
|
||||
'source_tmpl': 'tensorflow_estimator-%(version)s-py2.py3-none-any.whl',
|
||||
'checksums': ['f324ea17cd57f16e33bf188711d5077e6b2e5f5a12c328d6e01a07b23888edcd'],
|
||||
}),
|
||||
('Werkzeug', '2.2.2', {
|
||||
'checksums': ['7ea2d48322cc7c0f8b3a215ed73eabd7b5d75d0b50e31ab006286ccff9e00b8f'],
|
||||
}),
|
||||
('tensorboard-plugin-wit', '1.8.1', {
|
||||
'source_tmpl': 'tensorboard_plugin_wit-%(version)s-py3-none-any.whl',
|
||||
'checksums': ['ff26bdd583d155aa951ee3b152b3d0cffae8005dc697f72b44a8e8c2a77a8cbe'],
|
||||
}),
|
||||
('tensorboard-data-server', '0.6.1', {
|
||||
'source_tmpl': 'tensorboard_data_server-%(version)s-py3-none-any.whl',
|
||||
'checksums': ['809fe9887682d35c1f7d1f54f0f40f98bb1f771b14265b453ca051e2ce58fca7'],
|
||||
}),
|
||||
('Markdown', '3.4.1', {
|
||||
'checksums': ['3b809086bb6efad416156e00a0da66fe47618a5d6918dd688f53f40c8e4cfeff'],
|
||||
}),
|
||||
('grpcio', '1.51.1', {
|
||||
'modulename': 'grpc',
|
||||
'preinstallopts': "export GRPC_PYTHON_BUILD_EXT_COMPILER_JOBS=%(parallel)s && ",
|
||||
'checksums': ['e6dfc2b6567b1c261739b43d9c59d201c1b89e017afd9e684d85aa7a186c9f7a'],
|
||||
}),
|
||||
('oauthlib', '3.2.2', {
|
||||
'checksums': ['9859c40929662bec5d64f34d01c99e093149682a3f38915dc0655d5a633dd918'],
|
||||
}),
|
||||
('requests-oauthlib', '1.3.1', {
|
||||
'checksums': ['75beac4a47881eeb94d5ea5d6ad31ef88856affe2332b9aafb52c6452ccf0d7a'],
|
||||
}),
|
||||
('rsa', '4.9', {
|
||||
'checksums': ['e38464a49c6c85d7f1351b0126661487a7e0a14a50f1675ec50eb34d4f20ef21'],
|
||||
}),
|
||||
('pyasn1-modules', '0.2.8', {
|
||||
'checksums': ['905f84c712230b2c592c19470d3ca8d552de726050d1d1716282a1f6146be65e'],
|
||||
}),
|
||||
('cachetools', '5.2.1', {
|
||||
'checksums': ['5991bc0e08a1319bb618d3195ca5b6bc76646a49c21d55962977197b301cc1fe'],
|
||||
}),
|
||||
('google-auth', '2.16.0', {
|
||||
'modulename': 'google.auth',
|
||||
'checksums': ['ed7057a101af1146f0554a769930ac9de506aeca4fd5af6543ebe791851a9fbd'],
|
||||
}),
|
||||
('google-auth-oauthlib', '0.4.6', {
|
||||
'checksums': ['a90a072f6993f2c327067bf65270046384cda5a8ecb20b94ea9a687f1f233a7a'],
|
||||
}),
|
||||
('absl-py', '1.4.0', {
|
||||
'modulename': 'absl',
|
||||
'checksums': ['d2c244d01048ba476e7c080bd2c6df5e141d211de80223460d5b3b8a2a58433d'],
|
||||
}),
|
||||
('tensorboard', version, {
|
||||
'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
|
||||
'checksums': ['fb9222c1750e2fa35ef170d998a1e229f626eeced3004494a8849c88c15d8c1c'],
|
||||
}),
|
||||
('opt-einsum', '3.3.0', {
|
||||
'source_tmpl': 'opt_einsum-%(version)s.tar.gz',
|
||||
'checksums': ['59f6475f77bbc37dcf7cd748519c0ec60722e91e63ca114e68821c0c54a46549'],
|
||||
}),
|
||||
('Keras-Preprocessing', '1.1.2', {
|
||||
'source_tmpl': 'Keras_Preprocessing-%(version)s.tar.gz',
|
||||
'checksums': ['add82567c50c8bc648c14195bf544a5ce7c1f76761536956c3d2978970179ef3'],
|
||||
}),
|
||||
('keras', '2.10.0', {
|
||||
'source_tmpl': '%(name)s-%(version)s-py2.py3-none-any.whl',
|
||||
'checksums': ['26a6e2c2522e7468ddea22710a99b3290493768fc08a39e75d1173a0e3452fdf'],
|
||||
}),
|
||||
('google-pasta', '0.2.0', {
|
||||
'modulename': 'pasta',
|
||||
'checksums': ['c9f2c8dfc8f96d0d5808299920721be30c9eec37f2389f28904f454565c8a16e'],
|
||||
}),
|
||||
('astunparse', '1.6.3', {
|
||||
'checksums': ['5ad93a8456f0d084c3456d059fd9a92cce667963232cbf763eac3bc5b7940872'],
|
||||
}),
|
||||
('gast', '0.4.0', {
|
||||
'checksums': ['40feb7b8b8434785585ab224d1568b857edb18297e5a3047f1ba012bc83b42c1'],
|
||||
}),
|
||||
('beniget', '0.3.0', {
|
||||
'checksums': ['062c893be9cdf87c3144fb15041cce4d81c67107c1591952cd45fdce789a0ff1'],
|
||||
}),
|
||||
('pythran', '0.9.11', {
|
||||
'checksums': ['a317f91e2aade9f6550dc3bf40b5caeb45b7e012daf27e2b3e4ad928edb01667'],
|
||||
}),
|
||||
('portpicker', '1.5.2', {
|
||||
'checksums': ['c55683ad725f5c00a41bc7db0225223e8be024b1fa564d039ed3390e4fd48fb3'],
|
||||
}),
|
||||
('tblib', '1.7.0', {
|
||||
'checksums': ['059bd77306ea7b419d4f76016aef6d7027cc8a0785579b5aad198803435f882c'],
|
||||
}),
|
||||
('astor', '0.8.1', {
|
||||
'checksums': ['6a6effda93f4e1ce9f618779b2dd1d9d84f1e32812c23a29b3fff6fd7f63fa5e'],
|
||||
}),
|
||||
('gviz-api', '1.10.0', {
|
||||
'source_tmpl': 'gviz_api-%(version)s.tar.gz',
|
||||
'checksums': ['846692dd8cc73224fc31b18e41589bd934e1cc05090c6576af4b4b26c2e71b90'],
|
||||
}),
|
||||
('tensorboard-plugin-profile', '2.8.0', {
|
||||
'source_tmpl': 'tensorboard_plugin_profile-%(version)s.tar.gz',
|
||||
'checksums': ['58d65c979951e7628ca3b46c798e10e5813026a3ecfbacc319cf88ebe766134a'],
|
||||
}),
|
||||
(name, version, {
|
||||
'patches': [
|
||||
'TensorFlow-2.4.0_dont-use-var-lock.patch',
|
||||
'TensorFlow-2.5.0_disable-avx512-extensions.patch',
|
||||
'TensorFlow-2.5.0-fix-alias-violation-in-absl.patch',
|
||||
'TensorFlow-2.5.0_fix-crash-on-shutdown.patch',
|
||||
'TensorFlow-2.8.4_exclude-xnnpack-on-ppc.patch',
|
||||
'TensorFlow-2.8.4_resolve-gcc-symlinks.patch',
|
||||
'TensorFlow-2.9.1_remove-duplicate-gpu-tests.patch',
|
||||
'TensorFlow-2.9.1_remove-libclang-and-io-gcs-deps.patch',
|
||||
],
|
||||
'source_tmpl': 'v%(version)s.tar.gz',
|
||||
'source_urls': ['https://github.com/tensorflow/tensorflow/archive/'],
|
||||
'test_script': 'TensorFlow-2.x_mnist-test.py',
|
||||
'test_tag_filters_cpu': '-gpu,-tpu,-no_cuda_on_cpu_tap,-no_pip,-no_oss,-oss_serial,-benchmark-test,-v1only',
|
||||
'test_tag_filters_gpu': 'gpu,-no_gpu,-nogpu,-gpu_cupti,-no_cuda11,-no_pip,-no_oss,-oss_serial,-benchmark-test,-v1only',
|
||||
'test_targets': [
|
||||
'//tensorflow/core/...',
|
||||
'-//tensorflow/core:example_java_proto',
|
||||
'-//tensorflow/core/example:example_protos_closure',
|
||||
'//tensorflow/cc/...',
|
||||
'//tensorflow/c/...',
|
||||
'//tensorflow/python/...',
|
||||
'-//tensorflow/c/eager:c_api_test_gpu',
|
||||
'-//tensorflow/c/eager:c_api_distributed_test',
|
||||
'-//tensorflow/c/eager:c_api_distributed_test_gpu',
|
||||
'-//tensorflow/c/eager:c_api_cluster_test_gpu',
|
||||
'-//tensorflow/c/eager:c_api_remote_function_test_gpu',
|
||||
'-//tensorflow/c/eager:c_api_remote_test_gpu',
|
||||
'-//tensorflow/core/common_runtime:collective_param_resolver_local_test',
|
||||
'-//tensorflow/core/common_runtime:mkl_layout_pass_test',
|
||||
'-//tensorflow/core/kernels/mkl:mkl_fused_ops_test',
|
||||
'-//tensorflow/core/kernels/mkl:mkl_fused_batch_norm_op_test',
|
||||
'-//tensorflow/core/ir/importexport/tests/roundtrip/...',
|
||||
],
|
||||
'testopts': "--test_timeout=3600 --test_size_filters=small",
|
||||
'testopts_gpu': "--test_timeout=3600 --test_size_filters=small --run_under=//tensorflow/tools/ci_build/gpu_build:parallel_gpu_execute",
|
||||
'with_xla': True,
|
||||
'checksums': [
|
||||
{'v2.10.1.tar.gz': '622a92e22e6f3f4300ea43b3025a0b6122f1cc0e2d9233235e4c628c331a94a3'},
|
||||
{'TensorFlow-2.4.0_dont-use-var-lock.patch':
|
||||
'b14f2493fd2edf79abd1c4f2dde6c98a3e7d5cb9c25ab9386df874d5f072d6b5'},
|
||||
{'TensorFlow-2.5.0_disable-avx512-extensions.patch':
|
||||
'3655ce24c97569ac9738c07cac85347ba6f5c815ada95b19b606ffa46d4dda03'},
|
||||
{'TensorFlow-2.5.0-fix-alias-violation-in-absl.patch':
|
||||
'12454fda3330fb45cd380377e283f04488b40e0b8ae7378e786ddf731a581f75'},
|
||||
{'TensorFlow-2.5.0_fix-crash-on-shutdown.patch':
|
||||
'578c7493221ebd3dc25ca43d63a72cbb28fdf4112b1e2baa7390f25781bd78fd'},
|
||||
{'TensorFlow-2.8.4_exclude-xnnpack-on-ppc.patch':
|
||||
'ebd404ac56cc4ca662483f1f591e62e11749361be57a7ba5f4b2f0d03e829884'},
|
||||
{'TensorFlow-2.8.4_resolve-gcc-symlinks.patch':
|
||||
'db57afc1bdc2ea3367754a808af8a5f35a67e9b78862081701a08839151f788b'},
|
||||
{'TensorFlow-2.9.1_remove-duplicate-gpu-tests.patch':
|
||||
'6fe50faab28387c622c68dc3fc0cbfb2a51000cd750c1a82f8420b54fcd2509f'},
|
||||
{'TensorFlow-2.9.1_remove-libclang-and-io-gcs-deps.patch':
|
||||
'13a987ce8e20957d9a618493f6a0e8f67e0f9c8b11596f27bcd7322a8e62113d'},
|
||||
],
|
||||
}),
|
||||
]
|
||||
|
||||
moduleclass = 'lib'
|
18
t/Tensorflow/TensorFlow-2.8.4_exclude-xnnpack-on-ppc.patch
Normal file
18
t/Tensorflow/TensorFlow-2.8.4_exclude-xnnpack-on-ppc.patch
Normal file
@ -0,0 +1,18 @@
|
||||
XNNPACK is not supported on PowerPC so disable it by default.
|
||||
See https://github.com/tensorflow/tensorflow/issues/58768
|
||||
|
||||
Author: Alexander Grund (TU Dresden)
|
||||
|
||||
diff --git a/tensorflow/lite/BUILD b/tensorflow/lite/BUILD
|
||||
index 198f949b341..d15dcf9a80d 100644
|
||||
--- a/tensorflow/lite/BUILD
|
||||
+++ b/tensorflow/lite/BUILD
|
||||
@@ -709,6 +709,8 @@ cc_library(
|
||||
deps = select({
|
||||
"//tensorflow:macos": [],
|
||||
"//tensorflow:fuchsia": [],
|
||||
+ # XNNPACK is not supported on PPC
|
||||
+ "//tensorflow:linux_ppc64le": [],
|
||||
"//conditions:default": [":tflite_with_xnnpack_enabled"],
|
||||
}),
|
||||
)
|
28
t/Tensorflow/TensorFlow-2.8.4_resolve-gcc-symlinks.patch
Normal file
28
t/Tensorflow/TensorFlow-2.8.4_resolve-gcc-symlinks.patch
Normal file
@ -0,0 +1,28 @@
|
||||
Fix for "undeclared inclusion(s) in rule" errors when the installation directory
|
||||
for GCC is hosted in a path that is a symlink to another path.
|
||||
|
||||
From https://github.com/tensorflow/tensorflow/pull/56360
|
||||
|
||||
From b3a8fdbcb79e723f8d62f86bddcfdfb73fe76291 Mon Sep 17 00:00:00 2001
|
||||
From: Jinzhe Zeng <jinzhe.zeng@rutgers.edu>
|
||||
Date: Sat, 4 Jun 2022 19:06:58 -0400
|
||||
Subject: [PATCH] resolve gcc_host_compiler_path in a symlink directory
|
||||
|
||||
Resolves a missing dependency declarations error, when gcc_host_compiler_path is in a symlink directory resolving to other directories.
|
||||
---
|
||||
configure.py | 2 +-
|
||||
1 file changed, 1 insertion(+), 1 deletion(-)
|
||||
|
||||
diff --git a/configure.py b/configure.py
|
||||
index bf338bdda2297..77af09a22a05d 100644
|
||||
--- a/configure.py
|
||||
+++ b/configure.py
|
||||
@@ -619,7 +619,7 @@ def prompt_loop_or_load_from_env(environ_cp,
|
||||
'Assuming to be a scripting mistake.' %
|
||||
(var_name, n_ask_attempts))
|
||||
|
||||
- if resolve_symlinks and os.path.islink(val):
|
||||
+ if resolve_symlinks:
|
||||
val = os.path.realpath(val)
|
||||
environ_cp[var_name] = val
|
||||
return val
|
@ -0,0 +1,55 @@
|
||||
TensorFlow adds some GPU tests twice increasing the runtime of the test suite.
|
||||
This filters out the test part meant for CPU.
|
||||
|
||||
See https://github.com/tensorflow/tensorflow/issues/47081
|
||||
From https://github.com/tensorflow/tensorflow/pull/59129
|
||||
|
||||
Author: Alexander Grund (TU Dresden)
|
||||
---
|
||||
tensorflow/tensorflow.bzl | 33 +++++++++++++++++----------------
|
||||
1 file changed, 17 insertions(+), 16 deletions(-)
|
||||
|
||||
diff --git a/tensorflow/tensorflow.bzl b/tensorflow/tensorflow.bzl
|
||||
index 649c8e22dcc95..d3fc0e3221497 100644
|
||||
--- a/tensorflow/tensorflow.bzl
|
||||
+++ b/tensorflow/tensorflow.bzl
|
||||
@@ -1461,22 +1461,23 @@ def tf_gpu_cc_test(
|
||||
linkopts = [],
|
||||
**kwargs):
|
||||
targets = []
|
||||
- tf_cc_test(
|
||||
- name = name,
|
||||
- size = size,
|
||||
- srcs = srcs,
|
||||
- args = args,
|
||||
- data = data,
|
||||
- extra_copts = extra_copts + if_cuda(["-DNV_CUDNN_DISABLE_EXCEPTION"]),
|
||||
- kernels = kernels,
|
||||
- linkopts = linkopts,
|
||||
- linkstatic = linkstatic,
|
||||
- suffix = "_cpu",
|
||||
- tags = tags,
|
||||
- deps = deps,
|
||||
- **kwargs
|
||||
- )
|
||||
- targets.append(name + "_cpu")
|
||||
+ if 'gpu' not in tags:
|
||||
+ tf_cc_test(
|
||||
+ name = name,
|
||||
+ size = size,
|
||||
+ srcs = srcs,
|
||||
+ args = args,
|
||||
+ data = data,
|
||||
+ extra_copts = extra_copts + if_cuda(["-DNV_CUDNN_DISABLE_EXCEPTION"]),
|
||||
+ kernels = kernels,
|
||||
+ linkopts = linkopts,
|
||||
+ linkstatic = linkstatic,
|
||||
+ suffix = "_cpu",
|
||||
+ tags = tags,
|
||||
+ deps = deps,
|
||||
+ **kwargs
|
||||
+ )
|
||||
+ targets.append(name + "_cpu")
|
||||
tf_cc_test(
|
||||
name = name,
|
||||
size = size,
|
@ -0,0 +1,35 @@
|
||||
This combines two patches from TensorFlow 2.7.1.
|
||||
|
||||
tensorflow-io-gcs-filesystem is not available as a binary for all architectures and
|
||||
building it requires TensorFlow to be installed, i.e. there is a cyclic dependency.
|
||||
As it is not actually required (but optional) remove it from `REQUIRED_PACKAGES`.
|
||||
See https://github.com/tensorflow/tensorflow/issues/56636
|
||||
|
||||
libclang was introduced in
|
||||
https://github.com/tensorflow/tensorflow/commit/c211472000ff57bac7fcec9b0465cf73b37bf135
|
||||
> This is in preparation to open-source TF's TFRT backend.
|
||||
> TFRT generates code using libclang python bindings as part of the build.
|
||||
Hence it is not currently used and as it is not (easily) available for all architectures
|
||||
simply remove it.
|
||||
|
||||
Patch added by Simon Branford (University of Birmingham)
|
||||
Updated by Alexander Grund (TU Dresden)
|
||||
|
||||
--- a/tensorflow/tools/pip_package/setup.py
|
||||
+++ b/tensorflow/tools/pip_package/setup.py
|
||||
@@ -83,7 +83,6 @@ REQUIRED_PACKAGES = [
|
||||
'google_pasta >= 0.1.1',
|
||||
'h5py >= 2.9.0',
|
||||
'keras_preprocessing >= 1.1.1', # 1.1.0 needs tensorflow==1.7
|
||||
- 'libclang >= 13.0.0',
|
||||
'numpy >= 1.20',
|
||||
'opt_einsum >= 2.3.2',
|
||||
'packaging',
|
||||
@@ -100,7 +99,6 @@ REQUIRED_PACKAGES = [
|
||||
'termcolor >= 1.1.0',
|
||||
'typing_extensions >= 3.6.6',
|
||||
'wrapt >= 1.11.0',
|
||||
- 'tensorflow-io-gcs-filesystem >= 0.23.1',
|
||||
# grpcio does not build correctly on big-endian machines due to lack of
|
||||
# BoringSSL support.
|
||||
# See https://github.com/tensorflow/tensorflow/issues/17882.
|
56
u/UCX/UCX-1.13.1-GCCcore-12.2.0.eb
Normal file
56
u/UCX/UCX-1.13.1-GCCcore-12.2.0.eb
Normal file
@ -0,0 +1,56 @@
|
||||
# IT4Innovations 2023
|
||||
# JK
|
||||
easyblock = 'ConfigureMake'
|
||||
|
||||
name = 'UCX'
|
||||
version = '1.13.1'
|
||||
|
||||
homepage = 'https://www.openucx.org/'
|
||||
description = """Unified Communication X
|
||||
An open-source production grade communication framework for data centric
|
||||
and high-performance applications
|
||||
"""
|
||||
|
||||
toolchain = {'name': 'GCCcore', 'version': '12.2.0'}
|
||||
toolchainopts = {'pic': True}
|
||||
|
||||
source_urls = ['https://github.com/openucx/ucx/releases/download/v%(version)s']
|
||||
sources = ['%(namelower)s-%(version)s.tar.gz']
|
||||
patches = [
|
||||
'UCX-1.13.1-dynamic_modules.patch',
|
||||
'UCX-1.13.1_fix-undeclared-PTR.patch',
|
||||
]
|
||||
checksums = [
|
||||
{'ucx-1.13.1.tar.gz': '2c4a2f96c700e3705e185c2846a710691b6e800e8aec11fd4b3e47bcc3990548'},
|
||||
{'UCX-1.13.1-dynamic_modules.patch': '00874687bd90b795fff61aaa183f6c6bea2210aa1003b28f23d9ebf7066f8782'},
|
||||
{'UCX-1.13.1_fix-undeclared-PTR.patch': 'ef22c29604552ad3223f2a6bac352f30023cc5cf68f786abfdc4ad7c04189a76'},
|
||||
]
|
||||
|
||||
builddependencies = [
|
||||
('binutils', '2.39'),
|
||||
('Autotools', '20220317'),
|
||||
('pkgconf', '1.9.3'),
|
||||
]
|
||||
|
||||
osdependencies = [OS_PKG_IBVERBS_DEV]
|
||||
|
||||
dependencies = [
|
||||
('zlib', '1.2.12'),
|
||||
('numactl', '2.0.16'),
|
||||
]
|
||||
|
||||
configure_cmd = "contrib/configure-release"
|
||||
|
||||
configopts = '--enable-optimizations --enable-cma --enable-mt --with-verbs '
|
||||
configopts += '--without-java --without-go --disable-doxygen-doc '
|
||||
|
||||
buildopts = 'V=1'
|
||||
|
||||
sanity_check_paths = {
|
||||
'files': ['bin/ucx_info', 'bin/ucx_perftest', 'bin/ucx_read_profile'],
|
||||
'dirs': ['include', 'lib', 'share']
|
||||
}
|
||||
|
||||
sanity_check_commands = ["ucx_info -d"]
|
||||
|
||||
moduleclass = 'lib'
|
65
x/XALT/XALT-2.10.45-GPU-eb.eb
Normal file
65
x/XALT/XALT-2.10.45-GPU-eb.eb
Normal file
@ -0,0 +1,65 @@
|
||||
#IT4Innovations
|
||||
# LK 2023
|
||||
|
||||
name = 'XALT'
|
||||
version = '2.10.45'
|
||||
versionsuffix = "-GPU-eb"
|
||||
|
||||
homepage = 'https://github.com/xalt/xalt'
|
||||
description = """XALT 2 is a tool to allow a site to track user executables
|
||||
and library usage on a cluster. When installed it can tell a site what are
|
||||
the top executables by Node-Hours or by the number of users or the number
|
||||
of times it is run. XALT 2 also tracks library usage as well. XALT 2 can
|
||||
also track package use by R, MATLAB or Python. It tracks both MPI and
|
||||
non-MPI programs."""
|
||||
|
||||
toolchain = SYSTEM
|
||||
|
||||
# The location of XALT configuration file must be specified via
|
||||
# 'config_py' easyconfig parameter. You can edit the easyconfig file,
|
||||
# or use 'eb --try-amend=config_py=<path>'. " See
|
||||
# https://xalt.readthedocs.io/en/latest/030_site_filtering.html for
|
||||
# more information.
|
||||
config_py = "/apps/.xalt/IT4I_config.py"
|
||||
|
||||
# The name of the system must be specified via the 'syshost'
|
||||
# easyconfig parameter. You can edit the easyconfig file, or use 'eb
|
||||
# --try-amend=syshost=<string>'. See
|
||||
# https://xalt.readthedocs.io/en/latest/020_site_configuration.html
|
||||
# for more information.
|
||||
syshost = "env_var:CLUSTERNAME"
|
||||
|
||||
# The XALT transmission method must be specified via the
|
||||
# 'transmission' easyconfig parameter. You can edit the easyconfig
|
||||
# file, or use 'eb --try-amend=transmission=<string>'. See
|
||||
# https://xalt.readthedocs.io/en/latest/020_site_configuration.html
|
||||
# for more information.
|
||||
transmission = "file"
|
||||
|
||||
# Additional options
|
||||
executable_tracking = True
|
||||
gpu_tracking = True
|
||||
logging_url = None
|
||||
mysql = True
|
||||
scalar_sampling = True
|
||||
static_cxx = False
|
||||
|
||||
source_urls = ['https://github.com/xalt/xalt/archive/']
|
||||
sources = [SOURCELOWER_TAR_GZ]
|
||||
checksums = ['c10898402111b230eac1c0d3769a4b46361c97fc3415977c2199b5db3de8c547']
|
||||
|
||||
builddependencies = [
|
||||
('cURL', '7.76.0'),
|
||||
('flex', '2.6.4'),
|
||||
('util-linux', '2.36'),
|
||||
('CUDA', '11.7.0')
|
||||
]
|
||||
|
||||
osdependencies = [
|
||||
('bc'),
|
||||
('coreutils'),
|
||||
('libelf-dev', 'elfutils-libelf-devel'),
|
||||
OS_PKG_OPENSSL_DEV,
|
||||
]
|
||||
|
||||
moduleclass = 'lib'
|
@ -37,12 +37,12 @@ syshost = "env_var:CLUSTERNAME"
|
||||
transmission = "file"
|
||||
|
||||
# Additional options
|
||||
local_executable_tracking = True
|
||||
local_gpu_tracking = Yes
|
||||
local_logging_url = None
|
||||
local_mysql = False
|
||||
local_scalar_sampling = True
|
||||
local_static_cxx = True
|
||||
executable_tracking = True
|
||||
gpu_tracking = False
|
||||
logging_url = None
|
||||
mysql = True
|
||||
scalar_sampling = True
|
||||
static_cxx = False
|
||||
|
||||
source_urls = ['https://github.com/xalt/xalt/archive/']
|
||||
sources = [SOURCELOWER_TAR_GZ]
|
||||
|
Loading…
x
Reference in New Issue
Block a user