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new file: i/IOTK/IOTK-1.2.2-intel-2020a.eb
new file: i/IOTK/IOTK-intel-2020a.patch new file: l/libxc/libxc-2.2.3-intel-2020a.eb new file: n/netCDF-Fortran/netCDF-Fortran-4.5.2-intel-2020a.eb new file: y/Yambo/Yambo-4.5.2-intel-2020a.eb
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37
i/IOTK/IOTK-1.2.2-intel-2020a.eb
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37
i/IOTK/IOTK-1.2.2-intel-2020a.eb
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# JH 2020
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easyblock = 'MakeCp'
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name = 'IOTK'
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version = '1.2.2'
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homepage = 'https://github.com/QEF/iotk/tree/master/iotk'
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description = """The input/output tool kit (IOTK) is a Fortran90 library intended to provide a
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simplified access to tagged files formatted using some specific rule."""
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source_urls = ['https://github.com/yambo-code/yambo/files/962173']
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sources = ['iotk-y1.2.2.tar.gz']
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toolchain = {'name': 'intel', 'version': '2020a'}
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patches = ['IOTK-intel-2020a.patch']
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with_configure = True
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buildopts = 'all'
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maxparallel = 1
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files_to_copy = [
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(['include/*'], 'include'),
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(['src/*.x'], 'bin'),
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(['src/*.a'], 'lib'),
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(['src/*'], 'src'),
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]
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sanity_check_paths = {
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'files': [],
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'dirs': ['bin', 'include', 'lib'],
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}
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moduleclass = 'lib'
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104
i/IOTK/IOTK-intel-2020a.patch
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104
i/IOTK/IOTK-intel-2020a.patch
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--- Makefile.orig 2017-04-27 12:07:15.000000000 +0200
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+++ Makefile 2020-07-23 10:57:23.388831089 +0200
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@@ -1,5 +1,47 @@
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# Inclusion of system dependent files
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-include ../make.sys
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+
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+# -----------------------------
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+# # compilation rules
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+
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+.SUFFIXES :
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+.SUFFIXES : .o .c .F .f90
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+
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+.F.o:
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+ @rm -f $*.f90
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+ (eval $(FPP) $(IFLAGS) $(dopts) $*.F > $*.f90 ) > /dev/null
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+ (eval $(FC) $(FCFLAGS) -c $*.f90 ) > /dev/null
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+ @rm -f $*.f90
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+
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+
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+# -----------------------------
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+# # compiler definitions
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+
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+make = make
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+CC = mpiicc
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+CFLAGS = -O2 -xHost -ftz -fp-speculation=safe -fp-model source -D_C_US -D_FORTRAN_US $(IFLAGS)
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+CPP = mpiicc -E
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+FPP = fpp -free -P
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+CPPFLAGS = $(IFLAGS)
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+FC = mpiifort
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+MPIF90 = mpiifort
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+FCFLAGS = -nofor_main $(IFLAGS)
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+F77 = mpiifort
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+FFLAGS = -O2 -xHost -ftz -fp-speculation=safe -fp-model source
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+LD = mpiifort
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+LDFLAGS = -nofor_main $(IFLAGS)
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+AR = ar
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+ARFLAGS = -ru
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+RANLIB = echo
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+#RANLIB = @ranlib@
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+
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+
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+# -----------------------------
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+# # libraries
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+
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+#
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+##LIBS = $(extlibs_prefix)/$(fc_kind)/$(f90)/lib/libiotk.a
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+LIBS = ./libiotk.a
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+IFLAGS = -I./ -I../ -I../include
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info:
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cd src ; make info
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--- src/Makefile.orig 2020-07-23 11:55:21.410994964 +0200
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+++ src/Makefile 2020-07-23 11:57:24.072183404 +0200
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@@ -129,8 +129,48 @@
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# List of used library files
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AUTO_LIBS=$(LIB_IOTK)
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-# Inclusion of system dependent files
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-include $(IDEHOME)/make.sys
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+# -----------------------------
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+# # # compilation rules
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+
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+.SUFFIXES :
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+.SUFFIXES : .o .c .F .f90
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+
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+.F.o:
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+ @rm -f $*.f90
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+ (eval $(FPP) $(IFLAGS) $(dopts) $*.F > $*.f90 ) > /dev/null
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+ (eval $(FC) $(FCFLAGS) -c $*.f90 ) > /dev/null
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+ @rm -f $*.f90
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+
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+# -----------------------------
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+# # # compiler definitions
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+
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+make = make
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+CC = mpiicc
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+CFLAGS = -O2 -xHost -ftz -fp-speculation=safe -fp-model source -D_C_US -D_FORTRAN_US $(IFLAGS)
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+CPP = mpiicc -E
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+FPP = fpp -free -P
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+CPPFLAGS = $(IFLAGS)
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+FC = mpiifort
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+MPIF90 = mpiifort
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+FCFLAGS = -nofor_main $(IFLAGS)
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+F77 = mpiifort
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+FFLAGS = -O2 -xHost -ftz -fp-speculation=safe -fp-model source
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+LD = mpiifort
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+LDFLAGS = -nofor_main $(IFLAGS)
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+AR = ar
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+ARFLAGS = -ru
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+RANLIB = echo
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+#RANLIB = @ranlib@
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+
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+# -----------------------------
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+# # # libraries
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+
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+#
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+###LIBS = $(extlibs_prefix)/$(fc_kind)/$(f90)/lib/libiotk.a
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+LIBS = ./libiotk.a
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+IFLAGS = -I./ -I../ -I../include
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+
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+
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# Macro (re)definitions from OPTIONS file (keyword DEFINITION)
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PRECISION = $(FAUTODBL)
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34
l/libxc/libxc-2.2.3-intel-2020a.eb
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l/libxc/libxc-2.2.3-intel-2020a.eb
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# JH 2020
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easyblock = 'ConfigureMake'
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name = 'libxc'
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version = '2.2.3'
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homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc'
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description = """Libxc is a library of exchange-correlation functionals for density-functional theory.
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The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals."""
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toolchain = {'name': 'intel', 'version': '2020a'}
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toolchainopts = {'opt': True}
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sources = [SOURCE_TAR_GZ]
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source_urls = ['https://www.tddft.org/programs/libxc/down/%(version)s']
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configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared'
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# From the libxc mailing list
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# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect
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# a fully working testsuite soon (unless someone wants to volunteer to do
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# it, of course ) In the meantime, unless the majority of the tests
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# fail, your build should be fine.
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#runtest = 'check'
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sanity_check_paths = {
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'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT],
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'dirs': ['include'],
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}
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parallel = 1
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moduleclass = 'chem'
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26
n/netCDF-Fortran/netCDF-Fortran-4.5.2-intel-2020a.eb
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n/netCDF-Fortran/netCDF-Fortran-4.5.2-intel-2020a.eb
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# JH 2020
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name = 'netCDF-Fortran'
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version = '4.5.2'
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homepage = 'https://www.unidata.ucar.edu/software/netcdf/'
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description = """NetCDF (network Common Data Form) is a set of software libraries
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and machine-independent data formats that support the creation, access, and sharing of array-oriented
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scientific data."""
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toolchain = {'name': 'intel', 'version': '2020a'}
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toolchainopts = {'pic': True, 'usempi': True}
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source_urls = ['https://github.com/Unidata/netcdf-fortran/archive/']
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sources = ['v%(version)s.tar.gz']
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builddependencies = [
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('M4', '1.4.18'),
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]
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dependencies = [('netCDF', '4.7.3')]
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# (too) parallel build fails, but single-core build is fairly quick anyway (~1min)
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parallel = 1
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moduleclass = 'data'
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53
y/Yambo/Yambo-4.5.2-intel-2020a.eb
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53
y/Yambo/Yambo-4.5.2-intel-2020a.eb
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# JH 2020
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easyblock = 'MakeCp'
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name = 'Yambo'
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version = '4.5.2'
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homepage = 'http://www.yambo-code.org'
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description = """Yambo is a FORTRAN/C code for Many-Body calculations in solid state and molecular physics.
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Yambo relies on the Kohn-Sham wavefunctions generated by two DFT public codes: abinit, and PWscf."""
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toolchain = {'name': 'intel', 'version': '2020a'}
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toolchainopts = {'usempi': True}
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source_urls = ['https://github.com/yambo-code/yambo/archive']
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sources = ["%(version)s.tar.gz"]
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dependencies = [
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('netCDF-Fortran', '4.5.2'),
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('libxc', '2.2.3'),
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('IOTK', '1.2.2'),
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]
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#with_configure = True
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#configopts = 'CPPFLAGS="" FCFLAGS="-nofor_main" --with-blas-libs="$LIBBLAS" '
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#configopts += '--with-lapack-libs="$LIBLAPACK" --with-blacs-libs="$LIBBLACS" '
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#configopts += '--with-scalapack-libs="$LIBSCALAPACK" --with-fft-libs="$LIBFFT" '
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#configopts += '--with-netcdf-libs="-lnetcdff -lnetcdf" '
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#configopts += '--with-hdf5-path=$EBROOTHDF5 '
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#configopts += '--with-libxc-path=$EBROOTLIBXC '
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#configopts += '--enable-iotk '
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#onfigopts += '--with-iotk-path=$EBROOTIOTK '
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#configopts += '--enable-dp --enable-memory-profile --disable-open-mp '
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prebuildopts = './configure --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu CPPFLAGS="" FCFLAGS="-nofor_main" --with-blas-libs="$LIBBLAS" --with-lapack-libs="$LIBLAPACK" --with-blacs-libs="$LIBBLACS" --with-scalapack-libs="$LIBSCALAPACK" --with-fft-libs="$LIBFFT" --with-netcdf-libs="-lnetcdff -lnetcdf" --with-hdf5-path=$EBROOTHDF5 --with-libxc-path=$EBROOTLIBXC --enable-iotk --with-iotk-path=$EBROOTIOTK --enable-dp --enable-memory-profile --disable-open-mp && '
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buildopts = 'all'
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parallel = 1
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files_to_copy = [
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(['bin/*'], 'bin'),
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(['lib/*.a'], 'lib'),
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(['include/*'], 'include'),
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]
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sanity_check_paths = {
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'files': ['bin/' + x for x in ['a2y', 'p2y', 'yambo', 'ypp']],
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'dirs': []
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}
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moduleclass = 'phys'
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