diff --git a/g/Go/Go-1.12.7.eb b/g/Go/Go-1.12.7.eb new file mode 100644 index 00000000..323716cf --- /dev/null +++ b/g/Go/Go-1.12.7.eb @@ -0,0 +1,26 @@ +# It4Innovations 2019 + +easyblock = 'Tarball' + +name = 'Go' +version = '1.12.7' + +homepage = 'http://www.golang.org' +description = """Go is an open source programming language that makes it easy to build + simple, reliable, and efficient software.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['https://dl.google.com/go/'] +sources = ['%(namelower)s%(version)s.linux-amd64.tar.gz'] + +checksums = ['3f0ca2acb238bef57c7e2b6e3d8d0730'] + +sanity_check_paths = { + 'files': ['bin/go', 'bin/gofmt'], + 'dirs': ['api', 'doc', 'lib', 'pkg'], +} + +modextravars = {'GOROOT': '%(installdir)s'} + +moduleclass = 'compiler' diff --git a/h/hwloc/hwloc-1.11.7-GCC-9.1.0-2.32.eb b/h/hwloc/hwloc-1.11.7-GCC-9.1.0-2.32.eb new file mode 100644 index 00000000..82ee6d46 --- /dev/null +++ b/h/hwloc/hwloc-1.11.7-GCC-9.1.0-2.32.eb @@ -0,0 +1,26 @@ +# IT4Innovations 2019 + +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.11.7' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction +(across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including +NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various +system attributes such as cache and memory information as well as the locality of I/O devices such as +network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering +information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GCC', 'version': '9.1.0-2.32'} + +source_urls = [ + 'http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [('numactl', '2.0.11')] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +moduleclass = 'system' diff --git a/i/icc/icc-2019.4.227-GCC-9.1.0-2.32.eb b/i/icc/icc-2019.4.227-GCC-9.1.0-2.32.eb new file mode 100644 index 00000000..5726a1a2 --- /dev/null +++ b/i/icc/icc-2019.4.227-GCC-9.1.0-2.32.eb @@ -0,0 +1,41 @@ +# IT4Innovations 2019 + +name = 'icc' +version = '2019.4.227' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Intel C and C++ compilers" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://registrationcenter-download.intel.com/akdlm/irc_nas/tec/14865/'] +sources = ['parallel_studio_xe_%(version_major)s_update%(version_minor)s_composer_edition_for_cpp.tgz'] + +gccver = '9.1.0' +binutilsver = '2.32' +versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) + +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '', ('GCCcore', gccver)), +] + +# list of regex for components to install +# full list of components can be obtained from pset/mediaconfig.xml in unpacked sources +# cfr. https://software.intel.com/en-us/articles/intel-composer-xe-2015-silent-installation-guide +components = ['intel-comp', 'intel-ccomp', 'intel-icc', 'intel-openmp', 'intel-ipsc?_', 'intel-gdb(?!.*mic)'] + +dontcreateinstalldir = 'True' + +license_file = '/apps/licenses/intel/license.lic' + +modextravars = { + 'CC': 'icc', + 'CXX': 'icpc', + 'OPTFLAGS': '-O3 -xHost -ip', + 'DEBUGFLAGS': '-O0 -g' +} + +modluafooter = 'add_property("state","experimental")' + +moduleclass = 'compiler' diff --git a/i/iccifort/iccifort-2019.4.227-GCC-9.1.0-2.32.eb b/i/iccifort/iccifort-2019.4.227-GCC-9.1.0-2.32.eb new file mode 100644 index 00000000..63bc027d --- /dev/null +++ b/i/iccifort/iccifort-2019.4.227-GCC-9.1.0-2.32.eb @@ -0,0 +1,31 @@ +# IT4Innovations 2019 + +easyblock = 'Toolchain' + +name = 'iccifort' +version = '2019.4.227' +versionsuffix = '-GCC-9.1.0-2.32' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = "Intel C, C++ & Fortran compilers" + +toolchain = {'name': 'dummy', 'version': ''} + +dependencies = [ + ('icc', version, versionsuffix), + ('ifort', version, versionsuffix), +] + +modextravars = { + 'CC': 'icc', + 'CXX': 'icpc', + 'F90': 'ifort', + 'F77': 'ifort', + 'FC': 'ifort', + 'OPTFLAGS': '-O3 -xHost -ip', + 'DEBUGFLAGS': '-O0 -g' +} + +modluafooter = 'add_property("state","experimental")' + +moduleclass = 'toolchain' diff --git a/i/ifort/ifort-2019.4.227-GCC-9.1.0-2.32.eb b/i/ifort/ifort-2019.4.227-GCC-9.1.0-2.32.eb new file mode 100644 index 00000000..afa83ad3 --- /dev/null +++ b/i/ifort/ifort-2019.4.227-GCC-9.1.0-2.32.eb @@ -0,0 +1,43 @@ +# IT4Innovations 2019 + +name = 'ifort' +version = '2019.4.227' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Intel Fortran compiler" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://registrationcenter-download.intel.com/akdlm/irc_nas/tec/14866/'] +sources = ['parallel_studio_xe_%(version_major)s_update%(version_minor)s_composer_edition_for_fortran.tgz'] +#patches = ['ifort-%(version)s_no_mpi_mic_dependency.patch'] + +gccver = '9.1.0' +binutilsver = '2.32' +versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) + +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '', ('GCCcore', gccver)), +] + +# list of regex for components to install +# full list of components can be obtained from pset/mediaconfig.xml in unpacked sources +# cfr. https://software.intel.com/en-us/articles/intel-composer-xe-2015-silent-installation-guide +components = ['intel-comp', 'intel-fcomp', 'intel-ifort', 'intel-openmp', 'intel-ipsf?_', 'intel-gdb(?!.*mic)'] + +dontcreateinstalldir = 'True' + +license_file = '/apps/licenses/intel/license.lic' + +modextravars = { + 'F90': 'ifort', + 'F77': 'ifort', + 'FC': 'ifort', + 'OPTFLAGS': '-O3 -xHost -ip', + 'DEBUGFLAGS': '-O0 -g' +} + +modluafooter = 'add_property("state","experimental")' + +moduleclass = 'compiler' diff --git a/i/impi/impi-2019.3.199-iccifort-2019.4.227-GCC-9.1.0-2.32.eb b/i/impi/impi-2019.3.199-iccifort-2019.4.227-GCC-9.1.0-2.32.eb new file mode 100644 index 00000000..a626a058 --- /dev/null +++ b/i/impi/impi-2019.3.199-iccifort-2019.4.227-GCC-9.1.0-2.32.eb @@ -0,0 +1,33 @@ +# IT4Innovations 2019 + +name = 'impi' +version = '2019.3.199' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = "Intel MPI Library, compatible with MPICH ABI" + +toolchain = {'name': 'iccifort', 'version': '2019.4.227-GCC-9.1.0-2.32'} + +source_urls = ['http://registrationcenter-download.intel.com/akdlm/irc_nas/tec/14879/'] +sources = ['l_mpi_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +components = ['intel-mpi', 'intel-psxe', 'intel-imb'] + +# set up all the mpi commands to default to intel compilers +# set_mpi_wrappers_all = 'True' + +modextravars = { + 'I_MPI_CC': 'icc', + 'I_MPI_CXX': 'icpc', + 'I_MPI_F77': 'ifort', + 'I_MPI_F90': 'ifort', + 'I_MPI_FC': 'ifort', + 'I_MPI_EXTRA_FILESYSTEM': 'enable', + 'I_MPI_EXTRA_FILESYSTEM_LIST': 'lustre', +} + +modluafooter = 'add_property("state","experimental")' + +moduleclass = 'mpi' diff --git a/i/intel/intel-2019.03-GCC-9.1.0-2.32.eb b/i/intel/intel-2019.03-GCC-9.1.0-2.32.eb new file mode 100644 index 00000000..39485680 --- /dev/null +++ b/i/intel/intel-2019.03-GCC-9.1.0-2.32.eb @@ -0,0 +1,29 @@ +# IT4Innovations 2019 + +easyblock = 'Toolchain' + +name = 'intel' +version = '2019.03' +versionsuffix = '-GCC-9.1.0-2.32' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = "Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL)." + +toolchain = {'name': 'dummy', 'version': ''} + +compver = '2019.4.227' +gccver = '9.1.0' +binutilsver = '2.32' +gccsuff = '-GCC-%s-%s' % (gccver, binutilsver) +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '-GCCcore-%s' % gccver), + ('icc', compver, gccsuff), + ('ifort', compver, gccsuff), + ('impi', '2019.3.199', '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('imkl', '2019.3.199', '', ('iimpi', version)), +] + +modluafooter = 'add_property("state","experimental")' + +moduleclass = 'toolchain' diff --git a/n/numactl/numactl-2.0.11-GCCcore-9.1.0.eb b/n/numactl/numactl-2.0.11-GCCcore-9.1.0.eb new file mode 100644 index 00000000..2ce30769 --- /dev/null +++ b/n/numactl/numactl-2.0.11-GCCcore-9.1.0.eb @@ -0,0 +1,38 @@ +# IT4Innovations 2018 + +easyblock = 'ConfigureMake' + +name = 'numactl' +version = '2.0.11' + +homepage = 'http://oss.sgi.com/projects/libnuma/' +description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. +It does this by supplying a NUMA memory policy to the operating system before running your program. +The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" + +toolchain = {'name': 'GCCcore', 'version': '9.1.0'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/numactl/numactl/archive/'] +sources = ['v2.0.12.tar.gz'] +checksums = ['a4d2292af28fb20007ddb9706f8bb1cc'] + +builddependencies = [ + ('binutils', '2.32'), + ('Autotools', '20180311', '', True), +] + +preconfigopts = "./autogen.sh && " + +sanity_check_paths = { + 'files': [ + 'bin/numactl', + 'bin/numastat', + 'lib/libnuma.%s' % + SHLIB_EXT, + 'lib/libnuma.a'], + 'dirs': [ + 'share/man', + 'include']} + +moduleclass = 'tools' diff --git a/o/OpenMPI/OpenMPI-2.1.5-GCC-9.1.0-2.32.eb b/o/OpenMPI/OpenMPI-2.1.5-GCC-9.1.0-2.32.eb new file mode 100644 index 00000000..66a19be4 --- /dev/null +++ b/o/OpenMPI/OpenMPI-2.1.5-GCC-9.1.0-2.32.eb @@ -0,0 +1,53 @@ +# IT4Innovations 2019 + +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '2.1.5' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-3.1 implementation.""" + +toolchain = {'name': 'GCC', 'version': '9.1.0-2.32'} + +source_urls = [ + 'http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('hwloc', '1.11.7') +] + +# for PBS Pro 13 +preconfigopts = 'export LIBS="-ldl" && ' + +configopts = '--enable-shared --enable-mpi-thread-multiple --with-verbs ' +# suppress failure modes in relation to mpirun path +configopts += '--enable-mpirun-prefix-by-default ' +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +# configopts += '--disable-dlopen ' # dont disable dlopen! +# https://github.com/open-mpi/ompi/issues/3630 +configopts += '--with-tm=/opt/pbs/default ' # Enable PBS +#configopts += '--enable-mpi-java ' # Java support RT#4090 +configopts += '--enable-mpi-cxx ' # Enable building the C++ MPI bindings + +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] + +libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"] +sanity_check_paths = { + 'files': [ + "bin/%s" % + binfile for binfile in [ + "ompi_info", "opal_wrapper", "orterun"]] + [ + "lib/lib%s.%s" % + (libfile, SHLIB_EXT) for libfile in libs] + [ + "include/%s.h" % + x for x in [ + "mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], 'dirs': [], } + +modextravars = {'OMPI_MCA_btl_openib_if_include': 'mlx4_0', + 'OMPI_MCA_oob_tcp_if_include': '10.0.0.0/8', + } + +moduleclass = 'mpi' diff --git a/s/Singularity/Singularity-3.2.1.eb b/s/Singularity/Singularity-3.2.1.eb new file mode 100644 index 00000000..9979915b --- /dev/null +++ b/s/Singularity/Singularity-3.2.1.eb @@ -0,0 +1,43 @@ +# IT4Innovations 2019 + +easyblock = 'ConfigureMake' + +name = 'Singularity' +version = '3.2.1' + +homepage = 'https://github.com/sylabs/singularity' +description = "Singularity is an open source container platform designed to be simple, fast, and secure. Singularity is optimized for EPC and HPC workloads, allowing untrusted users to run untrusted containers in a trusted way." + +toolchain = {'name': 'dummy', 'version': ''} + +sources = [{ + 'source_urls': ['https://github.com/sylabs/singularity/releases/download/v3.2.1/'], + 'filename': 'singularity-3.2.1.tar.gz', + 'extract_cmd': "mkdir -p src/github.com/sylabs/singularity && tar xfvz %s -C src/github.com/sylabs/singularity --strip-components=1", +}] + +builddependencies = [ + ('Go', '1.12.7'), +] + +dependencies = [ + ('squashfs-tools', '4.3'), +] + +skipsteps = ['configure'] + +prebuildopts = "export GOPATH=%(builddir)s && " +prebuildopts += "./mconfig --prefix=%(installdir)s && " +prebuildopts += "cd ./builddir && " +preinstallopts = "cd ./builddir && " + +postinstallcmds = [ + 'echo "mksquashfs path = /apps/all/squashfs-tools/4.3/bin" >> %(installdir)s/etc/singularity/singularity.conf', +] + +sanity_check_paths = { + 'files': ['bin/singularity'], + 'dirs': ['bin', 'etc', 'libexec', 'var'], +} + +moduleclass = 'tools'