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new file: a/ABINIT/ABINIT-9.6.1-intel-2020b.eb
new file: p/PLUMED/PLUMED-2.7.2-intel-2020b-Python-3.8.6.eb
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a/ABINIT/ABINIT-9.6.1-intel-2020b.eb
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a/ABINIT/ABINIT-9.6.1-intel-2020b.eb
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# IT4Innovations
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# LK 2021
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easyblock = 'ConfigureMake'
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name = 'ABINIT'
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version = '9.6.1'
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homepage = 'https://www.abinit.org/'
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description = """ABINIT is a package whose main program allows one to find the total energy,
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charge density and electronic structure of systems made of electrons and nuclei (molecules
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and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a
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planewave or wavelet basis."""
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# AMD/intel cpu
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toolchain = {'name': 'intel', 'version': '2020b'}
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import os
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if os.environ.get("CLUSTERNAME") in ["KAROLINA"]:
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toolchainopts = {'usempi': True, 'optarch': 'march=core-avx2', 'pic': True}
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else:
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toolchainopts = {'usempi': True, 'pic': True}
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source_urls = ['https://www.abinit.org/sites/default/files/packages/']
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sources = [SOURCELOWER_TAR_GZ]
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checksums = ['d1c000c29bf216027d4ec0ccce4b5625']
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builddependencies = [
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('Python', '3.8.6'),
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]
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dependencies = [
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('libxc', '4.3.4'),
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('netCDF', '4.7.4'),
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('netCDF-Fortran', '4.5.3'),
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('HDF5', '1.10.6', '-parallel'),
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('Wannier90', '3.1.0'),
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]
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# Ensure MPI with intel wrappers.
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configopts = '--with-mpi="yes" --enable-openmp="no" '
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configopts += ' FC="mpiifort" CC="mpiicc" CXX="mpiicpc" '
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# BLAS/Lapack from MKL
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configopts += '--with-linalg-flavor=mkl '
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# FFTW from MKL
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configopts += '--with-fft-flavor=dfti '
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# libxc support
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configopts += '--with-libxc=${EBROOTLIBXC} '
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# hdf5/netcdf4 support
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configopts += '--with-netcdf="${EBROOTNETCDF}" '
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configopts += '--with-netcdf-fortran="${EBROOTNETCDFMINFORTRAN}" '
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configopts += '--with-hdf5="${EBROOTHDF5}" '
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# Wannier90
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configopts += '--with-wannier90="${EBROOTWANNIER90}" '
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preconfigopts = 'export WANNIER90_LIBS="-L$EBROOTWANNIER90/lib -lwannier" && '
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# 'make check' is just executing some basic unit tests.
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# Also running 'make tests_v1' to have some basic validation
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runtest = "check && make test_v1"
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sanity_check_paths = {
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'files': ['bin/%s' % x for x in ['abinit', 'aim', 'cut3d', 'conducti', 'mrgddb', 'mrgscr', 'optic']],
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'dirs': ['lib/pkgconfig'],
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}
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moduleclass = 'chem'
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p/PLUMED/PLUMED-2.7.2-intel-2020b-Python-3.8.6.eb
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p/PLUMED/PLUMED-2.7.2-intel-2020b-Python-3.8.6.eb
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# IT4Innovations
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# LK 2021
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easyblock = 'ConfigureMake'
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name = 'PLUMED'
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version = '2.7.2'
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versionsuffix = '-Python-%(pyver)s'
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homepage = 'https://www.plumed.org'
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description = """PLUMED is an open source library for free energy calculations in molecular systems which
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works together with some of the most popular molecular dynamics engines. Free energy calculations can be
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performed as a function of many order parameters with a particular focus on biological problems, using
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state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD.
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The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.
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"""
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toolchain = {'name': 'intel', 'version': '2020b'}
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toolchainopts = {'usempi': 'True'}
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source_urls = ['https://github.com/plumed/plumed2/releases/download/v%(version)s/']
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sources = [SOURCE_TGZ]
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dependencies = [
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('zlib', '1.2.11'),
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('GSL', '2.6'),
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('libmatheval', '1.1.11', '' , True),
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('Python', '3.8.6'),
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('SciPy-bundle', '2020.11'),
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('Boost', '1.74.0'),
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]
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preconfigopts = 'env FC=$MPIF90 LIBS="$LIBLAPACK $LIBS" '
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configopts = '--exec-prefix=%(installdir)s --enable-gsl --enable-modules=all --enable-python '
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configopts += '--enable-boost_graph --enable-boost_serialization '
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configopts += '--enable-asmjit '
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prebuildopts = 'source sourceme.sh && '
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# make sure that ld.gold linker is used
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# required to work around problems like "ld: BFD (GNU Binutils) 2.30 assertion fail elf.c:3564"
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# (problem with intel build but maintain consistency between easyconfigs)
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buildopts = 'LD_RO="ld.gold -r -o"'
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# install path for PLUMED libraries must be included in $LD_LIBRARY_PATH when Python bindings get built/installed
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preinstallopts = 'LD_LIBRARY_PATH="%(installdir)s/lib:$LD_LIBRARY_PATH" '
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sanity_check_paths = {
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'files': ['bin/plumed', 'lib/libplumedKernel.%s' % SHLIB_EXT, 'lib/libplumed.%s' % SHLIB_EXT],
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'dirs': [],
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}
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sanity_check_commands = ["python -c 'import plumed'"]
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modextrapaths = {
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'PLUMED_KERNEL': 'lib/libplumedKernel.%s' % SHLIB_EXT,
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'PLUMED_ROOT': 'lib/plumed',
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'PYTHONPATH': 'lib/plumed/python',
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}
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moduleclass = 'chem'
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