# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
# Author: Pablo Escobar Lopez
# sciCORE - University of Basel
# SIB Swiss Institute of Bioinformatics

easyblock = 'ConfigureMake'

name = 'ChIP-Seq'
version = '1.5-1'

homepage = 'http://chip-seq.sourceforge.net/'
description = """The ChIP-Seq software provides methods for the analysis of ChIP-seq data and 
 other types of mass genome annotation data. The most common analysis tasks include positional 
 correlation analysis, peak detection, and genome partitioning into signal-rich and signal-depleted regions."""

toolchain = {'name': 'goolf', 'version': '1.4.10'}

source_urls = ['http://downloads.sourceforge.net/project/chip-seq/chip-seq/%(version)s/']
sources = ['%(namelower)s.%(version)s.tar.gz']

skipsteps = ['configure']

buildopts = ' CC=$CC'

preinstallopts = 'mkdir -p %(installdir)s/bin && '

installopts = ' binDir=%(installdir)s/bin && '
installopts += 'mkdir -p %(installdir)s/man/man1 && '
installopts += 'make man manDir=%(installdir)s/man/man1/ && '
installopts += 'cp -a tools/ %(installdir)s && '
installopts += 'cp -a README doc/ %(installdir)s'

sanity_check_paths = {
    'files': ["bin/%s" % x for x in ["chipcenter", "chipcor", "chipextract", "chippart", "chippeak",
                                     "chipscore", "compactsga", "counts_filter", "countsga", "featreplace"]],
    'dirs': []
}

# add tools dir to PATH
modextrapaths = {
    'PATH': "tools",
}

# fix shebang line in all provided perl scripts in tools folder
postinstallcmds = ["sed -i -e 's|/usr/bin/perl|/usr/bin/env\ perl|' %(installdir)s/tools/*.pl",
                   "sed -i -e 's|/usr/local/bin/perl|/usr/bin/env\ perl|' %(installdir)s/tools/*.pl"]

moduleclass = 'bio'
