# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
# Author: Pablo Escobar Lopez
# sciCORE - University of Basel
# SIB Swiss Institute of Bioinformatics 

# Provided binaries required OpenBLAS and GSL libraries

easyblock = 'Tarball'

name = 'EIGENSOFT'
version = '6.1.1'

homepage = 'http://www.hsph.harvard.edu/alkes-price/software/'
description = """The EIGENSOFT package combines functionality from our population genetics methods (Patterson et al. 2006) 
 and our EIGENSTRAT stratification correction method (Price et al. 2006). The EIGENSTRAT method uses principal components 
 analysis to explicitly model ancestry differences between cases and controls along continuous axes of variation; 
 the resulting correction is specific to a candidate marker’s variation in frequency across ancestral populations, 
 minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFT package has a built-in 
 plotting script and supports multiple file formats and quantitative phenotypes."""

toolchain = {'name': 'goolf', 'version': '1.7.20'}

dependencies = [
    ('GSL', '1.16'),
]

source_urls = [
    'https://data.broadinstitute.org/alkesgroup/EIGENSOFT/',
    'https://data.broadinstitute.org/alkesgroup/EIGENSOFT/OLD/']
sources = ['EIG%(version)s.tar.gz']

sanity_check_paths = {
    'files': ['bin/%s' % x for x in ["baseprog", "convertf", "eigenstrat", "eigenstratQTL"]],
    'dirs': []
}

moduleclass = 'bio'
