easyblock = 'ConfigureMake'

name = 'DIAL'
version = '2011.06.06'

homepage = 'http://www.bx.psu.edu/miller_lab/'
description = """DIAL (De novo Identification of Alleles) is a collection of programs
 to automate the discovery of alleles for a species where we lack a reference sequence. 
 The SNPs/alleles are specifically selected for a low error rate in genotyping assays.  
"""

toolchain = {'name': 'foss', 'version': '2016a'}

sources = [SOURCE_TAR_GZ]
source_urls = ['http://www.bx.psu.edu/miller_lab/dist/']

patches = ['DIAL-%(version)s_Makefile.in.patch']

dependencies = [
    ('LASTZ', '1.02.00'),
]

binaries = [ 'assemble', 'assemble1', 'assemble_illumina', 'build_sff_index', 'convertFastqFasta',
	'cull_components', 'DIAL', 'filter', 'filter_clusters', 'fish_clusters', 'make_template', 
	'masker', 'partition', 'remove_clones', 'remove_clusters', 'update', 'update_clusters',
    'update_status',]

sanity_check_paths = {
    'files': ['bin/%s' % binfile for binfile in binaries],
    'dirs': ['bin']
}

moduleclass = 'bio'
