##
# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
#
# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA
# Authors::   Cedric Laczny <cedric.laczny@uni.lu>, Fotis Georgatos <fotis@cern.ch>
# License::   MIT/GPL
# $Id$
#
# This work implements a part of the HPCBIOS project and is a component of the policy:
# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html
##

easyblock = 'ConfigureMake'

name = 'ViennaRNA'
version = '2.1.6'

homepage = 'http://www.tbi.univie.ac.at/~ronny/RNA/vrna2.html'
description = """The Vienna RNA Package consists of a C code library and several
stand-alone programs for the prediction and comparison of RNA secondary structures."""

toolchain = {'name': 'ictce', 'version': '5.5.0'}
toolchainopts = {'optarch': True, 'pic': True}

sources = [SOURCE_TAR_GZ]
source_urls = ['http://www.tbi.univie.ac.at/~ronny/RNA/packages/source']

patches = ['ViennaRNA-2.1.6_ictce.patch']

# Prevents the "make install" step from trying to copy to _global_ perl
# dir and thus make easybuild fail.
configopts = '--without-perl'
# Alternatively, you may want to use the following to copy the perl-module to a "local" directory
# Code NOT yet tested, therefor left here for future recycling
#preconfigopts = 'env PERLPREFIX="/path/where/the/perl/module/shoud/go"'

sanity_check_paths = {
    'files': [
        'bin/RNA%s' %
        x for x in [
            'fold',
            'eval',
            'heat',
            'pdist',
            'distance',
            'inverse',
            'plot',
            'subopt',
            'Lfold',
            'cofold',
            'paln',
            'duplex',
            'alifold',
            'plfold',
            'up',
            'aliduplex',
            'Lalifold',
            '2Dfold',
            'parconv',
            'PKplex',
            'plex',
            'snoop',
            'forester']] +
    ['bin/Kinfold'],
    'dirs': [],
}

moduleclass = 'bio'
