From 3c6db0bbb59d2ec77ebf53c75dfe7c1711814b76 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Luk=C3=A1=C5=A1=20Pleva=C4=8D?= <lukas@plevac.eu>
Date: Sun, 28 Jan 2024 11:50:51 +0100
Subject: [PATCH] Added pseudo parallel

---
 SDC-Sim                 |  1 +
 codes/caUnaryAdd.asm    | 34 ++++++++++++++++++++++
 codes/sep.asm           | 63 +++++++++++++++++++++++++++++++++++++++++
 src/SIMDDNA/register.py |  5 ++++
 4 files changed, 103 insertions(+)
 create mode 120000 SDC-Sim
 create mode 100644 codes/caUnaryAdd.asm
 create mode 100644 codes/sep.asm

diff --git a/SDC-Sim b/SDC-Sim
new file mode 120000
index 0000000..a8c92b0
--- /dev/null
+++ b/SDC-Sim
@@ -0,0 +1 @@
+src/main.py
\ No newline at end of file
diff --git a/codes/caUnaryAdd.asm b/codes/caUnaryAdd.asm
new file mode 100644
index 0000000..c1bf3b6
--- /dev/null
+++ b/codes/caUnaryAdd.asm
@@ -0,0 +1,34 @@
+#
+# Shift left register in DNA|SIMD
+# @autor Lukáš Plevač <xpleva07@vutbr.cz>
+# @date 12.06.2023
+#
+
+define:
+    0 [AB][CD][EF]
+    1 [ABC][DEF]
+    2 {A}[BCDE]{F}
+
+data:
+    00022120
+
+instructions: 
+    {F*A*G*}       # mark 02 and 22
+    {F*A*B*G*}     # mark 20 nothing to do here and open binding for 21
+    {F*A*B*C*G*}   # mark 21
+    {B*C*D*E*}     # replace old zero with 2
+    {FAG} 
+    {A*B*C*D*G*}   # unvrap 2 when 02
+    {ABCDG} 
+
+    {A*B*C*} {D*E*F*} # set 1
+
+    
+
+    #{DEF}
+    
+    #{FABG}  # unmark 20
+    
+    #{B*C*D*E*} # write 2
+
+    #{FABCG}
\ No newline at end of file
diff --git a/codes/sep.asm b/codes/sep.asm
new file mode 100644
index 0000000..eb83cab
--- /dev/null
+++ b/codes/sep.asm
@@ -0,0 +1,63 @@
+#
+# Shift left register in DNA|SIMD
+# @autor Lukáš Plevač <xpleva07@vutbr.cz>
+# @date 11.28.2023
+#
+
+define:
+    #   BIT     NOT selector
+    0 [ABC][DE]{NSL}
+    1 [ABCD]{ENSL}
+
+data:
+    #    Implicit zero
+    00110[ABC][DE][NSL]
+    10101[ABC][DE][NSL]
+
+instructions: # O(33)
+    {E*N*S*L*A*}      # unvrap DE from zero and bind here on tother site onvrap first base
+    {D*E*N*S*L*G*}    # replace unvraper if on left site is 0
+    {ENSLA}           # remove all existing unvrapers free when left 1
+    {E*N*S*L*A*B*}    # unvrap 0 when is on right is 0 on free space and fully binde here if is 1 right 
+    {ENSLAB}          # unvrap unwraper if is 1 on right
+    {E*N*S*L*I*}      # bind not selector for 11 on free space (only free when 1 right and 1 left) (prevent E binding to)
+    {N*S*L*A*B*C*F*}  # REMOVE {E*N*S*L*A*B*}
+    {DENSLG}          # REMOVE {D*E*N*S*L*G*}
+    {NSLABCF}         # REMOVE {N*S*L*A*B*C*F*} 
+    {A*B*C*}          # write zero fisrt part back
+
+    {E*N*S*L*J*}      # try fit in free space between cells (when 1 on right thare is no free base when 0 there is one free base)
+    {D*E*N*S*L*G*}    # replace {E*N*S*L*J*} when 0 on rigth
+    {DENSLG}          # REMOVE {D*E*N*S*L*G*} (now free only when have 0 on rigth)
+    {D*E*N*S*L*A*B*}  # unvrap 0 when is on left is 0 on free space and fully binde here if is 0 right 
+    {DENSLAB}         # unvrap {D*E*N*S*L*A*B*} when 1 on rigth
+
+    {E*N*S*L*Y*}         # pad NOT selector to prevent bind not selector here (01)
+    {B*C*D*G*} {DENSLAB} # unvrap {D*E*N*S*L*A*B*} using {B*C*D*G*} and remove 
+
+    {ENSLI}          # remove temp not selector for 11
+    {N*S*L*U*}       # bind not selector for 00
+
+    {ENSLY} {ENSLJ}  # remove PAD {E*N*S*L*Y*} and PAD {E*N*S*L*J*}
+    
+    # here is problem with 000
+    # {BCDG} remove unvraper {B*C*D*G*} not needed becasuse is replaced by 0
+
+    {A*B*C*} {D*E*}    # write 0
+    
+    # selected not subprogram
+
+    {G*D*E*N*}         # mark NOT 0 and NOT 1
+    {ABCD}             # remove unwraped 1
+    {GDEN}             # remove mark
+    {C*D*E*N*}         # mark write 0
+    {CDEN}             # remowe mark write 0 (is only posible when is unvraped for second part of zero)
+    {A*B*C*D*}         # write 1
+    {ABCD}             # remove not writed 1 (is unwraped by mark write 0)
+    {N*S*L*G*}         # unwrap write 0 mark
+    {CDEN}             # remove write 0 mark
+    {NSLG}             # remove unwraper
+    {A*B*C*} {D*E*}    # write 0
+    {NSLU}             # remove all not selectors
+
+    
diff --git a/src/SIMDDNA/register.py b/src/SIMDDNA/register.py
index ae62865..9df198f 100644
--- a/src/SIMDDNA/register.py
+++ b/src/SIMDDNA/register.py
@@ -6,6 +6,8 @@
 from . import molecule
 from . import ascii
 
+from joblib import Parallel, delayed
+
 class Register:
     ##
     # Init register
@@ -27,6 +29,9 @@ class Register:
     #
     def instruction(self, IMols):
         # @todo: while chainging
+        Parallel(n_jobs=4)(delayed(self.insDo)(IMols) for _ in range(4))
+        
+    def insDo(self, IMols):
         for _ in range(20):
             for mol in IMols:
                 # try bind mol to all possible bindings